Multiple sequence alignment - TraesCS4D01G114500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G114500 chr4D 100.000 2384 0 0 1 2384 95503598 95501215 0.000000e+00 4403.0
1 TraesCS4D01G114500 chr4D 80.288 208 31 7 143 347 69660671 69660871 5.310000e-32 148.0
2 TraesCS4D01G114500 chr4B 92.823 1254 52 17 463 1699 134992151 134990919 0.000000e+00 1783.0
3 TraesCS4D01G114500 chr4B 91.449 690 56 3 1697 2384 134990829 134990141 0.000000e+00 944.0
4 TraesCS4D01G114500 chr4B 83.369 463 71 4 11 473 135000340 134999884 7.880000e-115 424.0
5 TraesCS4D01G114500 chr4A 91.485 963 51 13 774 1706 484360004 484360965 0.000000e+00 1295.0
6 TraesCS4D01G114500 chr4A 94.915 295 14 1 429 722 484359406 484359700 6.000000e-126 460.0
7 TraesCS4D01G114500 chr1D 89.394 594 55 8 1796 2384 137069110 137069700 0.000000e+00 741.0
8 TraesCS4D01G114500 chr2A 89.039 593 59 6 1792 2381 478384724 478385313 0.000000e+00 730.0
9 TraesCS4D01G114500 chr2A 80.423 189 32 4 143 330 718915036 718914852 3.200000e-29 139.0
10 TraesCS4D01G114500 chr7B 88.384 594 65 4 1794 2384 510188348 510188940 0.000000e+00 712.0
11 TraesCS4D01G114500 chr2D 88.235 595 64 6 1793 2384 9243584 9242993 0.000000e+00 706.0
12 TraesCS4D01G114500 chr2D 75.943 212 44 7 142 348 99202351 99202560 4.190000e-18 102.0
13 TraesCS4D01G114500 chr1B 88.087 596 62 8 1792 2384 683442044 683441455 0.000000e+00 699.0
14 TraesCS4D01G114500 chr6D 87.919 596 64 7 1794 2384 162260808 162260216 0.000000e+00 695.0
15 TraesCS4D01G114500 chr6A 87.960 598 60 11 1793 2384 287630612 287630021 0.000000e+00 695.0
16 TraesCS4D01G114500 chr6A 84.409 186 25 3 146 330 139516381 139516199 1.880000e-41 180.0
17 TraesCS4D01G114500 chr6B 87.919 596 63 8 1793 2384 461029265 461029855 0.000000e+00 693.0
18 TraesCS4D01G114500 chr6B 76.142 197 31 11 143 337 720133001 720133183 3.260000e-14 89.8
19 TraesCS4D01G114500 chr5A 80.383 209 29 10 146 347 546102075 546102278 5.310000e-32 148.0
20 TraesCS4D01G114500 chr5D 80.423 189 33 4 143 329 238544867 238545053 8.880000e-30 141.0
21 TraesCS4D01G114500 chr7A 75.000 168 38 4 146 312 56657659 56657495 9.140000e-10 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G114500 chr4D 95501215 95503598 2383 True 4403.0 4403 100.000 1 2384 1 chr4D.!!$R1 2383
1 TraesCS4D01G114500 chr4B 134990141 134992151 2010 True 1363.5 1783 92.136 463 2384 2 chr4B.!!$R2 1921
2 TraesCS4D01G114500 chr4A 484359406 484360965 1559 False 877.5 1295 93.200 429 1706 2 chr4A.!!$F1 1277
3 TraesCS4D01G114500 chr1D 137069110 137069700 590 False 741.0 741 89.394 1796 2384 1 chr1D.!!$F1 588
4 TraesCS4D01G114500 chr2A 478384724 478385313 589 False 730.0 730 89.039 1792 2381 1 chr2A.!!$F1 589
5 TraesCS4D01G114500 chr7B 510188348 510188940 592 False 712.0 712 88.384 1794 2384 1 chr7B.!!$F1 590
6 TraesCS4D01G114500 chr2D 9242993 9243584 591 True 706.0 706 88.235 1793 2384 1 chr2D.!!$R1 591
7 TraesCS4D01G114500 chr1B 683441455 683442044 589 True 699.0 699 88.087 1792 2384 1 chr1B.!!$R1 592
8 TraesCS4D01G114500 chr6D 162260216 162260808 592 True 695.0 695 87.919 1794 2384 1 chr6D.!!$R1 590
9 TraesCS4D01G114500 chr6A 287630021 287630612 591 True 695.0 695 87.960 1793 2384 1 chr6A.!!$R2 591
10 TraesCS4D01G114500 chr6B 461029265 461029855 590 False 693.0 693 87.919 1793 2384 1 chr6B.!!$F1 591

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
31 32 0.036732 ACTTCGCTTTGGCTCCATCA 59.963 50.0 0.0 0.0 36.09 3.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1866 2246 0.175531 GCACACAGGGTTTTGCTTGT 59.824 50.0 0.0 0.0 32.0 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.813296 AGAAAGTAACCACTTCGCTTTG 57.187 40.909 0.00 0.00 44.41 2.77
23 24 3.564225 AGAAAGTAACCACTTCGCTTTGG 59.436 43.478 0.00 0.00 44.41 3.28
24 25 1.235724 AGTAACCACTTCGCTTTGGC 58.764 50.000 0.00 0.00 36.20 4.52
25 26 1.202770 AGTAACCACTTCGCTTTGGCT 60.203 47.619 0.00 0.00 36.20 4.75
26 27 1.197036 GTAACCACTTCGCTTTGGCTC 59.803 52.381 0.00 0.00 36.20 4.70
27 28 1.172812 AACCACTTCGCTTTGGCTCC 61.173 55.000 0.00 0.00 36.20 4.70
28 29 1.600636 CCACTTCGCTTTGGCTCCA 60.601 57.895 0.00 0.00 36.09 3.86
29 30 0.962356 CCACTTCGCTTTGGCTCCAT 60.962 55.000 0.00 0.00 36.09 3.41
30 31 0.449388 CACTTCGCTTTGGCTCCATC 59.551 55.000 0.00 0.00 36.09 3.51
31 32 0.036732 ACTTCGCTTTGGCTCCATCA 59.963 50.000 0.00 0.00 36.09 3.07
32 33 1.340405 ACTTCGCTTTGGCTCCATCAT 60.340 47.619 0.00 0.00 36.09 2.45
33 34 2.092968 ACTTCGCTTTGGCTCCATCATA 60.093 45.455 0.00 0.00 36.09 2.15
34 35 2.936919 TCGCTTTGGCTCCATCATAT 57.063 45.000 0.00 0.00 36.09 1.78
35 36 2.771089 TCGCTTTGGCTCCATCATATC 58.229 47.619 0.00 0.00 36.09 1.63
36 37 2.104622 TCGCTTTGGCTCCATCATATCA 59.895 45.455 0.00 0.00 36.09 2.15
37 38 3.079578 CGCTTTGGCTCCATCATATCAT 58.920 45.455 0.00 0.00 36.09 2.45
38 39 3.119955 CGCTTTGGCTCCATCATATCATG 60.120 47.826 0.00 0.00 36.09 3.07
39 40 3.192844 GCTTTGGCTCCATCATATCATGG 59.807 47.826 0.00 0.00 44.45 3.66
50 51 7.046033 TCCATCATATCATGGATTCAGATTCG 58.954 38.462 3.84 0.00 46.34 3.34
51 52 7.046033 CCATCATATCATGGATTCAGATTCGA 58.954 38.462 0.00 0.00 45.79 3.71
52 53 7.224949 CCATCATATCATGGATTCAGATTCGAG 59.775 40.741 0.00 0.00 45.79 4.04
53 54 7.237209 TCATATCATGGATTCAGATTCGAGT 57.763 36.000 0.00 0.00 0.00 4.18
54 55 7.318893 TCATATCATGGATTCAGATTCGAGTC 58.681 38.462 0.00 0.00 0.00 3.36
55 56 4.327982 TCATGGATTCAGATTCGAGTCC 57.672 45.455 4.05 10.78 41.09 3.85
56 57 2.871182 TGGATTCAGATTCGAGTCCG 57.129 50.000 4.05 0.00 43.04 4.79
57 58 2.375146 TGGATTCAGATTCGAGTCCGA 58.625 47.619 4.05 0.00 43.04 4.55
58 59 2.959030 TGGATTCAGATTCGAGTCCGAT 59.041 45.455 4.05 0.00 43.04 4.18
59 60 4.142038 TGGATTCAGATTCGAGTCCGATA 58.858 43.478 4.05 0.00 43.04 2.92
60 61 4.216472 TGGATTCAGATTCGAGTCCGATAG 59.784 45.833 4.05 0.00 43.04 2.08
61 62 3.627732 TTCAGATTCGAGTCCGATAGC 57.372 47.619 4.05 0.00 45.10 2.97
62 63 1.880675 TCAGATTCGAGTCCGATAGCC 59.119 52.381 4.05 0.00 45.10 3.93
63 64 1.883275 CAGATTCGAGTCCGATAGCCT 59.117 52.381 4.05 0.00 45.10 4.58
64 65 2.095466 CAGATTCGAGTCCGATAGCCTC 60.095 54.545 4.05 0.00 45.10 4.70
65 66 2.156098 GATTCGAGTCCGATAGCCTCT 58.844 52.381 0.00 0.00 45.10 3.69
66 67 1.309950 TTCGAGTCCGATAGCCTCTG 58.690 55.000 0.00 0.00 45.10 3.35
67 68 0.180642 TCGAGTCCGATAGCCTCTGT 59.819 55.000 0.00 0.00 40.30 3.41
68 69 0.309302 CGAGTCCGATAGCCTCTGTG 59.691 60.000 0.00 0.00 38.22 3.66
69 70 1.681538 GAGTCCGATAGCCTCTGTGA 58.318 55.000 0.00 0.00 0.00 3.58
70 71 2.025155 GAGTCCGATAGCCTCTGTGAA 58.975 52.381 0.00 0.00 0.00 3.18
71 72 2.028130 AGTCCGATAGCCTCTGTGAAG 58.972 52.381 0.00 0.00 0.00 3.02
72 73 0.747255 TCCGATAGCCTCTGTGAAGC 59.253 55.000 0.00 0.00 0.00 3.86
73 74 0.461548 CCGATAGCCTCTGTGAAGCA 59.538 55.000 0.00 0.00 0.00 3.91
74 75 1.537776 CCGATAGCCTCTGTGAAGCAG 60.538 57.143 0.00 0.00 46.34 4.24
75 76 1.135915 CGATAGCCTCTGTGAAGCAGT 59.864 52.381 0.00 0.00 45.23 4.40
76 77 2.548875 GATAGCCTCTGTGAAGCAGTG 58.451 52.381 0.00 0.00 45.23 3.66
80 81 2.924185 CTCTGTGAAGCAGTGGTGG 58.076 57.895 0.00 0.00 45.23 4.61
81 82 0.394192 CTCTGTGAAGCAGTGGTGGA 59.606 55.000 0.00 0.00 45.23 4.02
82 83 1.002888 CTCTGTGAAGCAGTGGTGGAT 59.997 52.381 0.00 0.00 45.23 3.41
83 84 1.002430 TCTGTGAAGCAGTGGTGGATC 59.998 52.381 0.00 0.00 45.23 3.36
84 85 0.764271 TGTGAAGCAGTGGTGGATCA 59.236 50.000 0.00 0.00 0.00 2.92
85 86 1.142667 TGTGAAGCAGTGGTGGATCAA 59.857 47.619 0.00 0.00 0.00 2.57
86 87 1.808945 GTGAAGCAGTGGTGGATCAAG 59.191 52.381 0.00 0.00 0.00 3.02
87 88 1.699083 TGAAGCAGTGGTGGATCAAGA 59.301 47.619 0.00 0.00 0.00 3.02
88 89 2.079925 GAAGCAGTGGTGGATCAAGAC 58.920 52.381 0.00 0.00 0.00 3.01
89 90 0.036952 AGCAGTGGTGGATCAAGACG 60.037 55.000 0.00 0.00 0.00 4.18
90 91 1.021390 GCAGTGGTGGATCAAGACGG 61.021 60.000 0.00 0.00 0.00 4.79
91 92 1.021390 CAGTGGTGGATCAAGACGGC 61.021 60.000 0.00 0.00 0.00 5.68
92 93 2.100631 GTGGTGGATCAAGACGGCG 61.101 63.158 4.80 4.80 0.00 6.46
93 94 2.279810 TGGTGGATCAAGACGGCGA 61.280 57.895 16.62 0.00 0.00 5.54
94 95 1.079405 GGTGGATCAAGACGGCGAA 60.079 57.895 16.62 0.00 0.00 4.70
95 96 1.359459 GGTGGATCAAGACGGCGAAC 61.359 60.000 16.62 7.38 0.00 3.95
96 97 0.389948 GTGGATCAAGACGGCGAACT 60.390 55.000 16.62 9.91 0.00 3.01
97 98 0.320374 TGGATCAAGACGGCGAACTT 59.680 50.000 16.62 15.73 0.00 2.66
98 99 1.000145 GGATCAAGACGGCGAACTTC 59.000 55.000 16.62 0.00 0.00 3.01
99 100 1.671850 GGATCAAGACGGCGAACTTCA 60.672 52.381 16.62 5.71 0.00 3.02
100 101 2.066262 GATCAAGACGGCGAACTTCAA 58.934 47.619 16.62 9.35 0.00 2.69
101 102 1.497991 TCAAGACGGCGAACTTCAAG 58.502 50.000 16.62 7.39 0.00 3.02
102 103 0.512952 CAAGACGGCGAACTTCAAGG 59.487 55.000 16.62 3.36 0.00 3.61
103 104 0.391597 AAGACGGCGAACTTCAAGGA 59.608 50.000 16.62 0.00 0.00 3.36
104 105 0.319641 AGACGGCGAACTTCAAGGAC 60.320 55.000 16.62 0.00 0.00 3.85
105 106 1.289800 GACGGCGAACTTCAAGGACC 61.290 60.000 16.62 0.00 0.00 4.46
106 107 1.301401 CGGCGAACTTCAAGGACCA 60.301 57.895 0.00 0.00 0.00 4.02
107 108 0.882927 CGGCGAACTTCAAGGACCAA 60.883 55.000 0.00 0.00 0.00 3.67
108 109 1.314730 GGCGAACTTCAAGGACCAAA 58.685 50.000 0.00 0.00 0.00 3.28
109 110 1.679153 GGCGAACTTCAAGGACCAAAA 59.321 47.619 0.00 0.00 0.00 2.44
110 111 2.543031 GGCGAACTTCAAGGACCAAAAC 60.543 50.000 0.00 0.00 0.00 2.43
111 112 2.357952 GCGAACTTCAAGGACCAAAACT 59.642 45.455 0.00 0.00 0.00 2.66
112 113 3.562557 GCGAACTTCAAGGACCAAAACTA 59.437 43.478 0.00 0.00 0.00 2.24
113 114 4.035909 GCGAACTTCAAGGACCAAAACTAA 59.964 41.667 0.00 0.00 0.00 2.24
114 115 5.449451 GCGAACTTCAAGGACCAAAACTAAA 60.449 40.000 0.00 0.00 0.00 1.85
115 116 6.557110 CGAACTTCAAGGACCAAAACTAAAA 58.443 36.000 0.00 0.00 0.00 1.52
116 117 6.691388 CGAACTTCAAGGACCAAAACTAAAAG 59.309 38.462 0.00 0.00 0.00 2.27
117 118 6.465439 ACTTCAAGGACCAAAACTAAAAGG 57.535 37.500 0.00 0.00 0.00 3.11
118 119 4.929819 TCAAGGACCAAAACTAAAAGGC 57.070 40.909 0.00 0.00 0.00 4.35
119 120 3.639561 TCAAGGACCAAAACTAAAAGGCC 59.360 43.478 0.00 0.00 0.00 5.19
120 121 3.322191 AGGACCAAAACTAAAAGGCCA 57.678 42.857 5.01 0.00 0.00 5.36
121 122 3.856900 AGGACCAAAACTAAAAGGCCAT 58.143 40.909 5.01 0.00 0.00 4.40
122 123 3.832490 AGGACCAAAACTAAAAGGCCATC 59.168 43.478 5.01 0.00 0.00 3.51
123 124 3.576550 GGACCAAAACTAAAAGGCCATCA 59.423 43.478 5.01 0.00 0.00 3.07
124 125 4.556233 GACCAAAACTAAAAGGCCATCAC 58.444 43.478 5.01 0.00 0.00 3.06
125 126 3.964031 ACCAAAACTAAAAGGCCATCACA 59.036 39.130 5.01 0.00 0.00 3.58
126 127 4.592778 ACCAAAACTAAAAGGCCATCACAT 59.407 37.500 5.01 0.00 0.00 3.21
127 128 5.170748 CCAAAACTAAAAGGCCATCACATC 58.829 41.667 5.01 0.00 0.00 3.06
128 129 5.170748 CAAAACTAAAAGGCCATCACATCC 58.829 41.667 5.01 0.00 0.00 3.51
129 130 4.322057 AACTAAAAGGCCATCACATCCT 57.678 40.909 5.01 0.00 0.00 3.24
130 131 4.322057 ACTAAAAGGCCATCACATCCTT 57.678 40.909 5.01 0.00 41.64 3.36
131 132 4.019174 ACTAAAAGGCCATCACATCCTTG 58.981 43.478 5.01 0.00 39.90 3.61
132 133 2.905415 AAAGGCCATCACATCCTTGA 57.095 45.000 5.01 0.00 39.90 3.02
133 134 2.134789 AAGGCCATCACATCCTTGAC 57.865 50.000 5.01 0.00 38.66 3.18
134 135 0.994247 AGGCCATCACATCCTTGACA 59.006 50.000 5.01 0.00 0.00 3.58
135 136 1.355381 AGGCCATCACATCCTTGACAA 59.645 47.619 5.01 0.00 0.00 3.18
136 137 2.024655 AGGCCATCACATCCTTGACAAT 60.025 45.455 5.01 0.00 0.00 2.71
137 138 2.100252 GGCCATCACATCCTTGACAATG 59.900 50.000 0.00 0.00 0.00 2.82
138 139 2.480759 GCCATCACATCCTTGACAATGC 60.481 50.000 0.00 0.00 0.00 3.56
139 140 3.021695 CCATCACATCCTTGACAATGCT 58.978 45.455 0.00 0.00 0.00 3.79
140 141 3.446161 CCATCACATCCTTGACAATGCTT 59.554 43.478 0.00 0.00 0.00 3.91
141 142 4.421058 CATCACATCCTTGACAATGCTTG 58.579 43.478 0.00 0.00 0.00 4.01
143 144 3.890756 TCACATCCTTGACAATGCTTGTT 59.109 39.130 3.56 0.00 45.52 2.83
144 145 4.341806 TCACATCCTTGACAATGCTTGTTT 59.658 37.500 3.56 0.00 45.52 2.83
145 146 5.051816 CACATCCTTGACAATGCTTGTTTT 58.948 37.500 3.56 0.00 45.52 2.43
146 147 5.524646 CACATCCTTGACAATGCTTGTTTTT 59.475 36.000 3.56 0.00 45.52 1.94
171 172 8.755696 TTTTCGACAAAGGATGGATTTTATTG 57.244 30.769 0.00 0.00 0.00 1.90
172 173 7.461182 TTCGACAAAGGATGGATTTTATTGT 57.539 32.000 0.00 0.00 32.68 2.71
173 174 7.083875 TCGACAAAGGATGGATTTTATTGTC 57.916 36.000 0.00 0.00 40.87 3.18
174 175 6.884295 TCGACAAAGGATGGATTTTATTGTCT 59.116 34.615 12.25 0.00 41.66 3.41
175 176 7.065803 TCGACAAAGGATGGATTTTATTGTCTC 59.934 37.037 12.25 0.00 41.66 3.36
176 177 7.148255 CGACAAAGGATGGATTTTATTGTCTCA 60.148 37.037 12.25 0.00 41.66 3.27
177 178 8.421249 ACAAAGGATGGATTTTATTGTCTCAA 57.579 30.769 0.00 0.00 0.00 3.02
178 179 8.869109 ACAAAGGATGGATTTTATTGTCTCAAA 58.131 29.630 0.00 0.00 0.00 2.69
179 180 9.709495 CAAAGGATGGATTTTATTGTCTCAAAA 57.291 29.630 0.00 0.00 0.00 2.44
194 195 7.092137 TGTCTCAAAATAAAGCATCATGAGG 57.908 36.000 2.22 2.22 33.31 3.86
195 196 6.095860 TGTCTCAAAATAAAGCATCATGAGGG 59.904 38.462 9.76 0.94 33.31 4.30
196 197 6.096001 GTCTCAAAATAAAGCATCATGAGGGT 59.904 38.462 6.19 6.19 33.31 4.34
197 198 7.283127 GTCTCAAAATAAAGCATCATGAGGGTA 59.717 37.037 13.02 0.00 33.31 3.69
198 199 8.000709 TCTCAAAATAAAGCATCATGAGGGTAT 58.999 33.333 13.02 0.53 33.31 2.73
199 200 9.288576 CTCAAAATAAAGCATCATGAGGGTATA 57.711 33.333 13.02 0.00 30.81 1.47
200 201 9.639563 TCAAAATAAAGCATCATGAGGGTATAA 57.360 29.630 13.02 1.87 0.00 0.98
201 202 9.903682 CAAAATAAAGCATCATGAGGGTATAAG 57.096 33.333 13.02 0.00 0.00 1.73
202 203 7.693969 AATAAAGCATCATGAGGGTATAAGC 57.306 36.000 13.02 0.89 0.00 3.09
203 204 4.712051 AAGCATCATGAGGGTATAAGCA 57.288 40.909 13.02 0.00 0.00 3.91
204 205 4.013267 AGCATCATGAGGGTATAAGCAC 57.987 45.455 10.82 0.00 0.00 4.40
205 206 3.392285 AGCATCATGAGGGTATAAGCACA 59.608 43.478 10.82 0.00 0.00 4.57
206 207 4.136796 GCATCATGAGGGTATAAGCACAA 58.863 43.478 9.76 0.00 0.00 3.33
207 208 4.763793 GCATCATGAGGGTATAAGCACAAT 59.236 41.667 9.76 0.00 0.00 2.71
208 209 5.335426 GCATCATGAGGGTATAAGCACAATG 60.335 44.000 9.76 0.00 0.00 2.82
209 210 5.628797 TCATGAGGGTATAAGCACAATGA 57.371 39.130 0.00 0.00 0.00 2.57
210 211 5.614308 TCATGAGGGTATAAGCACAATGAG 58.386 41.667 0.00 0.00 0.00 2.90
211 212 3.808728 TGAGGGTATAAGCACAATGAGC 58.191 45.455 0.00 0.00 0.00 4.26
212 213 3.199727 TGAGGGTATAAGCACAATGAGCA 59.800 43.478 5.34 0.00 0.00 4.26
213 214 3.545703 AGGGTATAAGCACAATGAGCAC 58.454 45.455 5.34 0.00 0.00 4.40
214 215 3.054434 AGGGTATAAGCACAATGAGCACA 60.054 43.478 5.34 0.00 0.00 4.57
215 216 3.065371 GGGTATAAGCACAATGAGCACAC 59.935 47.826 5.34 0.00 0.00 3.82
216 217 3.689161 GGTATAAGCACAATGAGCACACA 59.311 43.478 5.34 0.00 0.00 3.72
217 218 4.201851 GGTATAAGCACAATGAGCACACAG 60.202 45.833 5.34 0.00 0.00 3.66
218 219 0.313043 AAGCACAATGAGCACACAGC 59.687 50.000 5.34 0.00 46.19 4.40
227 228 3.963222 GCACACAGCTGACCTCTG 58.037 61.111 23.35 10.43 41.15 3.35
228 229 2.323580 GCACACAGCTGACCTCTGC 61.324 63.158 23.35 14.36 41.15 4.26
229 230 1.070275 CACACAGCTGACCTCTGCA 59.930 57.895 23.35 0.00 42.33 4.41
230 231 0.321387 CACACAGCTGACCTCTGCAT 60.321 55.000 23.35 0.00 42.33 3.96
231 232 1.066645 CACACAGCTGACCTCTGCATA 60.067 52.381 23.35 0.00 42.33 3.14
232 233 1.206610 ACACAGCTGACCTCTGCATAG 59.793 52.381 23.35 0.00 42.33 2.23
233 234 0.177604 ACAGCTGACCTCTGCATAGC 59.822 55.000 23.35 0.00 42.33 2.97
234 235 0.464870 CAGCTGACCTCTGCATAGCT 59.535 55.000 8.42 0.00 44.90 3.32
235 236 1.685517 CAGCTGACCTCTGCATAGCTA 59.314 52.381 8.42 0.00 42.38 3.32
236 237 1.962807 AGCTGACCTCTGCATAGCTAG 59.037 52.381 0.00 0.00 42.45 3.42
237 238 1.686052 GCTGACCTCTGCATAGCTAGT 59.314 52.381 0.00 0.00 40.06 2.57
238 239 2.545532 GCTGACCTCTGCATAGCTAGTG 60.546 54.545 0.00 0.00 40.06 2.74
239 240 2.692557 CTGACCTCTGCATAGCTAGTGT 59.307 50.000 0.00 0.00 0.00 3.55
240 241 2.428530 TGACCTCTGCATAGCTAGTGTG 59.571 50.000 0.00 0.00 0.00 3.82
241 242 2.428890 GACCTCTGCATAGCTAGTGTGT 59.571 50.000 0.00 0.00 0.00 3.72
242 243 3.632333 ACCTCTGCATAGCTAGTGTGTA 58.368 45.455 0.00 0.00 0.00 2.90
243 244 3.381908 ACCTCTGCATAGCTAGTGTGTAC 59.618 47.826 0.00 0.00 0.00 2.90
244 245 3.381590 CCTCTGCATAGCTAGTGTGTACA 59.618 47.826 0.00 0.00 0.00 2.90
245 246 4.355437 CTCTGCATAGCTAGTGTGTACAC 58.645 47.826 19.36 19.36 46.77 2.90
256 257 3.120321 GTGTGTACACCTCCAACATCA 57.880 47.619 22.91 0.00 40.85 3.07
257 258 3.472652 GTGTGTACACCTCCAACATCAA 58.527 45.455 22.91 0.00 40.85 2.57
258 259 3.250040 GTGTGTACACCTCCAACATCAAC 59.750 47.826 22.91 6.27 40.85 3.18
259 260 3.118223 TGTGTACACCTCCAACATCAACA 60.118 43.478 22.91 0.00 0.00 3.33
260 261 3.250040 GTGTACACCTCCAACATCAACAC 59.750 47.826 15.42 0.00 0.00 3.32
261 262 2.727123 ACACCTCCAACATCAACACA 57.273 45.000 0.00 0.00 0.00 3.72
262 263 3.228188 ACACCTCCAACATCAACACAT 57.772 42.857 0.00 0.00 0.00 3.21
263 264 2.886523 ACACCTCCAACATCAACACATG 59.113 45.455 0.00 0.00 0.00 3.21
264 265 1.888512 ACCTCCAACATCAACACATGC 59.111 47.619 0.00 0.00 0.00 4.06
265 266 1.887854 CCTCCAACATCAACACATGCA 59.112 47.619 0.00 0.00 0.00 3.96
266 267 2.352030 CCTCCAACATCAACACATGCAC 60.352 50.000 0.00 0.00 0.00 4.57
267 268 2.293955 CTCCAACATCAACACATGCACA 59.706 45.455 0.00 0.00 0.00 4.57
268 269 2.034432 TCCAACATCAACACATGCACAC 59.966 45.455 0.00 0.00 0.00 3.82
269 270 2.223758 CCAACATCAACACATGCACACA 60.224 45.455 0.00 0.00 0.00 3.72
270 271 3.445857 CAACATCAACACATGCACACAA 58.554 40.909 0.00 0.00 0.00 3.33
271 272 3.797451 ACATCAACACATGCACACAAA 57.203 38.095 0.00 0.00 0.00 2.83
272 273 4.120792 ACATCAACACATGCACACAAAA 57.879 36.364 0.00 0.00 0.00 2.44
273 274 4.502016 ACATCAACACATGCACACAAAAA 58.498 34.783 0.00 0.00 0.00 1.94
274 275 4.329528 ACATCAACACATGCACACAAAAAC 59.670 37.500 0.00 0.00 0.00 2.43
275 276 3.917988 TCAACACATGCACACAAAAACA 58.082 36.364 0.00 0.00 0.00 2.83
276 277 4.309933 TCAACACATGCACACAAAAACAA 58.690 34.783 0.00 0.00 0.00 2.83
277 278 4.751600 TCAACACATGCACACAAAAACAAA 59.248 33.333 0.00 0.00 0.00 2.83
278 279 4.660352 ACACATGCACACAAAAACAAAC 57.340 36.364 0.00 0.00 0.00 2.93
279 280 3.434984 ACACATGCACACAAAAACAAACC 59.565 39.130 0.00 0.00 0.00 3.27
280 281 3.434641 CACATGCACACAAAAACAAACCA 59.565 39.130 0.00 0.00 0.00 3.67
281 282 3.683822 ACATGCACACAAAAACAAACCAG 59.316 39.130 0.00 0.00 0.00 4.00
282 283 2.072298 TGCACACAAAAACAAACCAGC 58.928 42.857 0.00 0.00 0.00 4.85
283 284 2.072298 GCACACAAAAACAAACCAGCA 58.928 42.857 0.00 0.00 0.00 4.41
284 285 2.481952 GCACACAAAAACAAACCAGCAA 59.518 40.909 0.00 0.00 0.00 3.91
285 286 3.126686 GCACACAAAAACAAACCAGCAAT 59.873 39.130 0.00 0.00 0.00 3.56
286 287 4.331168 GCACACAAAAACAAACCAGCAATA 59.669 37.500 0.00 0.00 0.00 1.90
287 288 5.502220 GCACACAAAAACAAACCAGCAATAG 60.502 40.000 0.00 0.00 0.00 1.73
288 289 4.570369 ACACAAAAACAAACCAGCAATAGC 59.430 37.500 0.00 0.00 42.56 2.97
289 290 4.569966 CACAAAAACAAACCAGCAATAGCA 59.430 37.500 0.00 0.00 45.49 3.49
290 291 5.064452 CACAAAAACAAACCAGCAATAGCAA 59.936 36.000 0.00 0.00 45.49 3.91
291 292 5.645497 ACAAAAACAAACCAGCAATAGCAAA 59.355 32.000 0.00 0.00 45.49 3.68
292 293 5.989551 AAAACAAACCAGCAATAGCAAAG 57.010 34.783 0.00 0.00 45.49 2.77
293 294 4.670896 AACAAACCAGCAATAGCAAAGT 57.329 36.364 0.00 0.00 45.49 2.66
294 295 4.243007 ACAAACCAGCAATAGCAAAGTC 57.757 40.909 0.00 0.00 45.49 3.01
295 296 3.636300 ACAAACCAGCAATAGCAAAGTCA 59.364 39.130 0.00 0.00 45.49 3.41
296 297 4.281688 ACAAACCAGCAATAGCAAAGTCAT 59.718 37.500 0.00 0.00 45.49 3.06
297 298 5.476599 ACAAACCAGCAATAGCAAAGTCATA 59.523 36.000 0.00 0.00 45.49 2.15
298 299 6.153340 ACAAACCAGCAATAGCAAAGTCATAT 59.847 34.615 0.00 0.00 45.49 1.78
299 300 7.339212 ACAAACCAGCAATAGCAAAGTCATATA 59.661 33.333 0.00 0.00 45.49 0.86
300 301 7.880160 AACCAGCAATAGCAAAGTCATATAA 57.120 32.000 0.00 0.00 45.49 0.98
301 302 7.502120 ACCAGCAATAGCAAAGTCATATAAG 57.498 36.000 0.00 0.00 45.49 1.73
302 303 7.282585 ACCAGCAATAGCAAAGTCATATAAGA 58.717 34.615 0.00 0.00 45.49 2.10
303 304 7.227512 ACCAGCAATAGCAAAGTCATATAAGAC 59.772 37.037 0.00 0.00 45.49 3.01
304 305 7.443575 CCAGCAATAGCAAAGTCATATAAGACT 59.556 37.037 4.79 4.79 46.75 3.24
305 306 9.481340 CAGCAATAGCAAAGTCATATAAGACTA 57.519 33.333 10.85 0.00 45.23 2.59
315 316 6.372185 AGTCATATAAGACTAAAGCTACGCG 58.628 40.000 8.83 3.53 46.52 6.01
316 317 6.017275 AGTCATATAAGACTAAAGCTACGCGT 60.017 38.462 19.17 19.17 46.52 6.01
317 318 7.172190 AGTCATATAAGACTAAAGCTACGCGTA 59.828 37.037 19.40 19.40 46.52 4.42
318 319 7.478044 GTCATATAAGACTAAAGCTACGCGTAG 59.522 40.741 35.95 35.95 35.65 3.51
319 320 3.417690 AAGACTAAAGCTACGCGTAGG 57.582 47.619 38.81 26.86 33.87 3.18
320 321 2.363683 AGACTAAAGCTACGCGTAGGT 58.636 47.619 37.54 37.54 44.83 3.08
321 322 3.535561 AGACTAAAGCTACGCGTAGGTA 58.464 45.455 41.08 29.08 42.42 3.08
322 323 3.941483 AGACTAAAGCTACGCGTAGGTAA 59.059 43.478 41.08 31.56 42.42 2.85
323 324 4.034975 AGACTAAAGCTACGCGTAGGTAAG 59.965 45.833 41.08 37.62 42.42 2.34
324 325 2.573941 AAAGCTACGCGTAGGTAAGG 57.426 50.000 41.08 21.33 42.42 2.69
325 326 1.755179 AAGCTACGCGTAGGTAAGGA 58.245 50.000 41.08 12.48 42.42 3.36
326 327 1.755179 AGCTACGCGTAGGTAAGGAA 58.245 50.000 40.59 10.75 41.56 3.36
327 328 2.094675 AGCTACGCGTAGGTAAGGAAA 58.905 47.619 40.59 9.98 41.56 3.13
328 329 2.493278 AGCTACGCGTAGGTAAGGAAAA 59.507 45.455 40.59 9.44 41.56 2.29
329 330 3.056607 AGCTACGCGTAGGTAAGGAAAAA 60.057 43.478 40.59 9.22 41.56 1.94
330 331 3.305361 GCTACGCGTAGGTAAGGAAAAAG 59.695 47.826 38.81 18.49 33.87 2.27
331 332 3.665745 ACGCGTAGGTAAGGAAAAAGA 57.334 42.857 11.67 0.00 0.00 2.52
332 333 3.993920 ACGCGTAGGTAAGGAAAAAGAA 58.006 40.909 11.67 0.00 0.00 2.52
333 334 4.379652 ACGCGTAGGTAAGGAAAAAGAAA 58.620 39.130 11.67 0.00 0.00 2.52
334 335 4.815846 ACGCGTAGGTAAGGAAAAAGAAAA 59.184 37.500 11.67 0.00 0.00 2.29
335 336 5.296531 ACGCGTAGGTAAGGAAAAAGAAAAA 59.703 36.000 11.67 0.00 0.00 1.94
351 352 2.438868 AAAAACCCAAAGCGATCTGC 57.561 45.000 1.92 1.92 46.98 4.26
362 363 1.823828 GCGATCTGCTCTGCAATTTG 58.176 50.000 0.00 0.00 38.41 2.32
363 364 1.533338 GCGATCTGCTCTGCAATTTGG 60.533 52.381 0.00 0.00 38.41 3.28
364 365 2.011947 CGATCTGCTCTGCAATTTGGA 58.988 47.619 0.00 0.00 38.41 3.53
365 366 2.421073 CGATCTGCTCTGCAATTTGGAA 59.579 45.455 0.00 0.00 38.41 3.53
366 367 3.119743 CGATCTGCTCTGCAATTTGGAAA 60.120 43.478 0.00 0.00 38.41 3.13
367 368 3.928727 TCTGCTCTGCAATTTGGAAAG 57.071 42.857 0.00 0.00 38.41 2.62
368 369 3.489355 TCTGCTCTGCAATTTGGAAAGA 58.511 40.909 0.00 0.00 38.41 2.52
369 370 3.504906 TCTGCTCTGCAATTTGGAAAGAG 59.495 43.478 0.00 0.00 38.41 2.85
371 372 2.860062 CTCTGCAATTTGGAAAGAGCG 58.140 47.619 0.00 0.00 0.00 5.03
372 373 2.485426 CTCTGCAATTTGGAAAGAGCGA 59.515 45.455 0.00 0.00 0.00 4.93
373 374 2.884012 TCTGCAATTTGGAAAGAGCGAA 59.116 40.909 0.00 0.00 0.00 4.70
374 375 3.317711 TCTGCAATTTGGAAAGAGCGAAA 59.682 39.130 0.00 0.00 0.00 3.46
375 376 4.022068 TCTGCAATTTGGAAAGAGCGAAAT 60.022 37.500 0.00 0.00 0.00 2.17
376 377 3.989167 TGCAATTTGGAAAGAGCGAAATG 59.011 39.130 0.00 0.00 0.00 2.32
377 378 3.181527 GCAATTTGGAAAGAGCGAAATGC 60.182 43.478 0.00 0.00 46.98 3.56
388 389 0.729690 GCGAAATGCCAGAGTCTTCC 59.270 55.000 0.00 0.00 37.76 3.46
389 390 1.002366 CGAAATGCCAGAGTCTTCCG 58.998 55.000 0.00 0.00 0.00 4.30
390 391 0.729690 GAAATGCCAGAGTCTTCCGC 59.270 55.000 0.00 0.00 0.00 5.54
391 392 0.036732 AAATGCCAGAGTCTTCCGCA 59.963 50.000 8.37 8.37 34.67 5.69
392 393 0.036732 AATGCCAGAGTCTTCCGCAA 59.963 50.000 9.67 0.00 34.09 4.85
393 394 0.254178 ATGCCAGAGTCTTCCGCAAT 59.746 50.000 9.67 0.00 34.09 3.56
394 395 0.391661 TGCCAGAGTCTTCCGCAATC 60.392 55.000 4.25 0.00 0.00 2.67
395 396 0.107945 GCCAGAGTCTTCCGCAATCT 60.108 55.000 0.00 0.00 0.00 2.40
396 397 1.933247 CCAGAGTCTTCCGCAATCTC 58.067 55.000 0.00 0.00 0.00 2.75
397 398 1.205655 CCAGAGTCTTCCGCAATCTCA 59.794 52.381 0.00 0.00 0.00 3.27
398 399 2.354103 CCAGAGTCTTCCGCAATCTCAA 60.354 50.000 0.00 0.00 0.00 3.02
399 400 2.670414 CAGAGTCTTCCGCAATCTCAAC 59.330 50.000 0.00 0.00 0.00 3.18
400 401 2.300152 AGAGTCTTCCGCAATCTCAACA 59.700 45.455 0.00 0.00 0.00 3.33
401 402 2.413453 GAGTCTTCCGCAATCTCAACAC 59.587 50.000 0.00 0.00 0.00 3.32
402 403 1.464997 GTCTTCCGCAATCTCAACACC 59.535 52.381 0.00 0.00 0.00 4.16
403 404 0.804989 CTTCCGCAATCTCAACACCC 59.195 55.000 0.00 0.00 0.00 4.61
404 405 0.608035 TTCCGCAATCTCAACACCCC 60.608 55.000 0.00 0.00 0.00 4.95
405 406 2.398554 CCGCAATCTCAACACCCCG 61.399 63.158 0.00 0.00 0.00 5.73
406 407 1.375396 CGCAATCTCAACACCCCGA 60.375 57.895 0.00 0.00 0.00 5.14
407 408 0.744414 CGCAATCTCAACACCCCGAT 60.744 55.000 0.00 0.00 0.00 4.18
408 409 0.734889 GCAATCTCAACACCCCGATG 59.265 55.000 0.00 0.00 0.00 3.84
409 410 1.678728 GCAATCTCAACACCCCGATGA 60.679 52.381 0.00 0.00 0.00 2.92
410 411 2.923121 CAATCTCAACACCCCGATGAT 58.077 47.619 0.00 0.00 0.00 2.45
411 412 2.615447 CAATCTCAACACCCCGATGATG 59.385 50.000 0.00 0.00 0.00 3.07
412 413 1.275666 TCTCAACACCCCGATGATGT 58.724 50.000 0.00 0.00 0.00 3.06
413 414 1.628340 TCTCAACACCCCGATGATGTT 59.372 47.619 0.00 0.00 37.02 2.71
416 417 1.821216 AACACCCCGATGATGTTGAC 58.179 50.000 0.00 0.00 35.28 3.18
417 418 0.984230 ACACCCCGATGATGTTGACT 59.016 50.000 0.00 0.00 0.00 3.41
418 419 1.339055 ACACCCCGATGATGTTGACTG 60.339 52.381 0.00 0.00 0.00 3.51
419 420 0.984230 ACCCCGATGATGTTGACTGT 59.016 50.000 0.00 0.00 0.00 3.55
420 421 2.093711 CACCCCGATGATGTTGACTGTA 60.094 50.000 0.00 0.00 0.00 2.74
421 422 2.569853 ACCCCGATGATGTTGACTGTAA 59.430 45.455 0.00 0.00 0.00 2.41
422 423 2.936498 CCCCGATGATGTTGACTGTAAC 59.064 50.000 0.00 0.00 0.00 2.50
423 424 2.603110 CCCGATGATGTTGACTGTAACG 59.397 50.000 0.00 0.00 33.28 3.18
424 425 3.507786 CCGATGATGTTGACTGTAACGA 58.492 45.455 0.00 0.00 33.28 3.85
425 426 3.924073 CCGATGATGTTGACTGTAACGAA 59.076 43.478 0.00 0.00 33.28 3.85
426 427 4.031765 CCGATGATGTTGACTGTAACGAAG 59.968 45.833 0.00 0.00 33.28 3.79
427 428 4.857037 CGATGATGTTGACTGTAACGAAGA 59.143 41.667 0.00 0.00 33.28 2.87
440 441 1.490574 ACGAAGATCAAGGAGGAGGG 58.509 55.000 0.00 0.00 0.00 4.30
458 459 3.849064 CCGTTTGTGGGCTTTGGA 58.151 55.556 0.00 0.00 0.00 3.53
488 491 7.333423 GCTACACACTTGAGTATTGTAATTCCA 59.667 37.037 6.36 0.00 30.20 3.53
541 544 3.751175 CACTGAAATTCGTGTGGTACCAT 59.249 43.478 19.72 0.00 0.00 3.55
599 602 8.194769 ACTGAATTTTCGGTGAAATAAAGTTGT 58.805 29.630 4.01 0.00 44.70 3.32
704 707 0.895100 TCCAGCCAAGAACCACATGC 60.895 55.000 0.00 0.00 0.00 4.06
728 731 0.819582 TGCATGATCGCAGAGAGTGA 59.180 50.000 0.00 0.00 43.63 3.41
729 732 1.202382 TGCATGATCGCAGAGAGTGAG 60.202 52.381 0.00 0.00 43.63 3.51
730 733 1.202394 GCATGATCGCAGAGAGTGAGT 60.202 52.381 0.00 0.00 43.63 3.41
731 734 2.461903 CATGATCGCAGAGAGTGAGTG 58.538 52.381 0.00 0.00 43.63 3.51
732 735 1.826385 TGATCGCAGAGAGTGAGTGA 58.174 50.000 0.00 0.00 43.63 3.41
733 736 1.742268 TGATCGCAGAGAGTGAGTGAG 59.258 52.381 0.00 0.00 43.63 3.51
734 737 1.065401 GATCGCAGAGAGTGAGTGAGG 59.935 57.143 0.00 0.00 43.63 3.86
735 738 0.036875 TCGCAGAGAGTGAGTGAGGA 59.963 55.000 0.00 0.00 31.89 3.71
736 739 0.451383 CGCAGAGAGTGAGTGAGGAG 59.549 60.000 0.00 0.00 0.00 3.69
737 740 0.817013 GCAGAGAGTGAGTGAGGAGG 59.183 60.000 0.00 0.00 0.00 4.30
738 741 1.473258 CAGAGAGTGAGTGAGGAGGG 58.527 60.000 0.00 0.00 0.00 4.30
739 742 0.334676 AGAGAGTGAGTGAGGAGGGG 59.665 60.000 0.00 0.00 0.00 4.79
740 743 0.686112 GAGAGTGAGTGAGGAGGGGG 60.686 65.000 0.00 0.00 0.00 5.40
741 744 1.149782 AGAGTGAGTGAGGAGGGGGA 61.150 60.000 0.00 0.00 0.00 4.81
742 745 0.686112 GAGTGAGTGAGGAGGGGGAG 60.686 65.000 0.00 0.00 0.00 4.30
743 746 2.039624 TGAGTGAGGAGGGGGAGC 59.960 66.667 0.00 0.00 0.00 4.70
798 1053 2.602257 TCGCATCAATACTGTGGAGG 57.398 50.000 0.00 0.00 0.00 4.30
861 1118 2.373707 GCCCATCAGAGCCCTCACT 61.374 63.158 0.00 0.00 0.00 3.41
872 1129 0.610232 GCCCTCACTGCCAAATCACT 60.610 55.000 0.00 0.00 0.00 3.41
891 1148 0.341258 TCTCCTTCCTCTGCCCATCT 59.659 55.000 0.00 0.00 0.00 2.90
937 1205 6.034591 AGTATCTCTTATCGTTTGTGTTCCG 58.965 40.000 0.00 0.00 0.00 4.30
938 1206 4.247267 TCTCTTATCGTTTGTGTTCCGT 57.753 40.909 0.00 0.00 0.00 4.69
955 1223 2.225491 TCCGTTTGCAAATTCTTCTCCG 59.775 45.455 16.21 11.02 0.00 4.63
983 1251 7.757097 ACGATACTATTTGATCTGTTGACAC 57.243 36.000 0.00 0.00 0.00 3.67
1034 1302 4.194720 GCGATCGAGGTGGCGAGT 62.195 66.667 21.57 0.00 44.26 4.18
1131 1399 1.747145 CGCAGCAGAGAGGATGGAT 59.253 57.895 0.00 0.00 0.00 3.41
1157 1425 0.460284 GGCGGTCATGATGAAGACGT 60.460 55.000 14.03 0.00 35.63 4.34
1158 1426 1.359848 GCGGTCATGATGAAGACGTT 58.640 50.000 14.03 0.00 35.63 3.99
1299 1567 2.642171 TGGTGACCAAGGAGGAGTAT 57.358 50.000 0.00 0.00 41.22 2.12
1521 1804 4.680702 GGTGGCAAGTACTAGTAGCTTAC 58.319 47.826 1.87 7.26 0.00 2.34
1669 1958 6.096705 TCCCTGGATAATGCAGTTTGTTTATG 59.903 38.462 0.00 0.00 33.66 1.90
1674 1963 7.331440 TGGATAATGCAGTTTGTTTATGCTTTG 59.669 33.333 0.00 0.00 40.62 2.77
1915 2295 4.553330 AAGGAACATTTAGCTTCTCGGA 57.447 40.909 0.00 0.00 0.00 4.55
2008 2391 2.357952 CGTCATCATACACCGGAGAAGA 59.642 50.000 9.46 1.40 0.00 2.87
2044 2428 7.834068 TTCAATCTACTCTTCCTTTCAATCG 57.166 36.000 0.00 0.00 0.00 3.34
2062 2446 5.007626 TCAATCGTTTCAATCGATGGGATTC 59.992 40.000 4.13 0.00 45.33 2.52
2233 2623 7.015877 CACCGACTTTCTTATAAAAGCTTGAC 58.984 38.462 0.00 0.00 39.39 3.18
2249 2639 6.973229 AGCTTGACCATTATTTGAATTTGC 57.027 33.333 0.00 0.00 0.00 3.68
2289 2680 4.406972 TGGGAACATGTGTTGGAAATTCAA 59.593 37.500 0.00 0.00 38.56 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 2.748465 AGCCAAAGCGAAGTGGTTACTT 60.748 45.455 0.00 0.00 46.67 2.24
5 6 1.202770 AGCCAAAGCGAAGTGGTTACT 60.203 47.619 0.00 0.00 46.67 2.24
6 7 1.197036 GAGCCAAAGCGAAGTGGTTAC 59.803 52.381 0.00 0.00 46.67 2.50
7 8 1.519408 GAGCCAAAGCGAAGTGGTTA 58.481 50.000 0.00 0.00 46.67 2.85
8 9 1.172812 GGAGCCAAAGCGAAGTGGTT 61.173 55.000 0.00 0.00 46.67 3.67
9 10 1.600916 GGAGCCAAAGCGAAGTGGT 60.601 57.895 0.00 0.00 46.67 4.16
10 11 0.962356 ATGGAGCCAAAGCGAAGTGG 60.962 55.000 0.00 0.00 46.67 4.00
11 12 0.449388 GATGGAGCCAAAGCGAAGTG 59.551 55.000 0.00 0.00 46.67 3.16
12 13 0.036732 TGATGGAGCCAAAGCGAAGT 59.963 50.000 0.00 0.00 46.67 3.01
13 14 1.386533 ATGATGGAGCCAAAGCGAAG 58.613 50.000 0.00 0.00 46.67 3.79
14 15 2.708216 TATGATGGAGCCAAAGCGAA 57.292 45.000 0.00 0.00 46.67 4.70
15 16 2.104622 TGATATGATGGAGCCAAAGCGA 59.895 45.455 0.00 0.00 46.67 4.93
16 17 2.497138 TGATATGATGGAGCCAAAGCG 58.503 47.619 0.00 0.00 46.67 4.68
17 18 3.192844 CCATGATATGATGGAGCCAAAGC 59.807 47.826 15.56 0.00 45.24 3.51
18 19 4.659115 TCCATGATATGATGGAGCCAAAG 58.341 43.478 18.83 0.00 45.85 2.77
19 20 4.727792 TCCATGATATGATGGAGCCAAA 57.272 40.909 18.83 0.00 45.85 3.28
26 27 7.046033 TCGAATCTGAATCCATGATATGATGG 58.954 38.462 14.57 14.57 43.96 3.51
27 28 7.764901 ACTCGAATCTGAATCCATGATATGATG 59.235 37.037 0.00 0.00 0.00 3.07
28 29 7.849160 ACTCGAATCTGAATCCATGATATGAT 58.151 34.615 0.00 0.00 0.00 2.45
29 30 7.237209 ACTCGAATCTGAATCCATGATATGA 57.763 36.000 0.00 0.00 0.00 2.15
30 31 6.534436 GGACTCGAATCTGAATCCATGATATG 59.466 42.308 0.00 0.00 0.00 1.78
31 32 6.626844 CGGACTCGAATCTGAATCCATGATAT 60.627 42.308 0.00 0.00 39.00 1.63
32 33 5.335976 CGGACTCGAATCTGAATCCATGATA 60.336 44.000 0.00 0.00 39.00 2.15
33 34 4.560311 CGGACTCGAATCTGAATCCATGAT 60.560 45.833 0.00 0.00 39.00 2.45
34 35 3.243535 CGGACTCGAATCTGAATCCATGA 60.244 47.826 0.00 0.00 39.00 3.07
35 36 3.055591 CGGACTCGAATCTGAATCCATG 58.944 50.000 0.00 0.00 39.00 3.66
36 37 2.959030 TCGGACTCGAATCTGAATCCAT 59.041 45.455 2.25 0.00 43.03 3.41
37 38 2.375146 TCGGACTCGAATCTGAATCCA 58.625 47.619 2.25 0.00 43.03 3.41
51 52 2.028130 CTTCACAGAGGCTATCGGACT 58.972 52.381 0.00 0.00 34.86 3.85
52 53 1.537135 GCTTCACAGAGGCTATCGGAC 60.537 57.143 0.00 0.00 31.81 4.79
53 54 0.747255 GCTTCACAGAGGCTATCGGA 59.253 55.000 0.00 0.00 31.81 4.55
54 55 0.461548 TGCTTCACAGAGGCTATCGG 59.538 55.000 2.85 0.00 35.64 4.18
65 66 0.764271 TGATCCACCACTGCTTCACA 59.236 50.000 0.00 0.00 0.00 3.58
66 67 1.808945 CTTGATCCACCACTGCTTCAC 59.191 52.381 0.00 0.00 0.00 3.18
67 68 1.699083 TCTTGATCCACCACTGCTTCA 59.301 47.619 0.00 0.00 0.00 3.02
68 69 2.079925 GTCTTGATCCACCACTGCTTC 58.920 52.381 0.00 0.00 0.00 3.86
69 70 1.609061 CGTCTTGATCCACCACTGCTT 60.609 52.381 0.00 0.00 0.00 3.91
70 71 0.036952 CGTCTTGATCCACCACTGCT 60.037 55.000 0.00 0.00 0.00 4.24
71 72 1.021390 CCGTCTTGATCCACCACTGC 61.021 60.000 0.00 0.00 0.00 4.40
72 73 1.021390 GCCGTCTTGATCCACCACTG 61.021 60.000 0.00 0.00 0.00 3.66
73 74 1.296715 GCCGTCTTGATCCACCACT 59.703 57.895 0.00 0.00 0.00 4.00
74 75 2.100631 CGCCGTCTTGATCCACCAC 61.101 63.158 0.00 0.00 0.00 4.16
75 76 1.822114 TTCGCCGTCTTGATCCACCA 61.822 55.000 0.00 0.00 0.00 4.17
76 77 1.079405 TTCGCCGTCTTGATCCACC 60.079 57.895 0.00 0.00 0.00 4.61
77 78 0.389948 AGTTCGCCGTCTTGATCCAC 60.390 55.000 0.00 0.00 0.00 4.02
78 79 0.320374 AAGTTCGCCGTCTTGATCCA 59.680 50.000 0.00 0.00 0.00 3.41
79 80 1.000145 GAAGTTCGCCGTCTTGATCC 59.000 55.000 2.68 0.00 0.00 3.36
80 81 1.710013 TGAAGTTCGCCGTCTTGATC 58.290 50.000 0.00 0.00 0.00 2.92
81 82 2.069273 CTTGAAGTTCGCCGTCTTGAT 58.931 47.619 0.00 0.00 0.00 2.57
82 83 1.497991 CTTGAAGTTCGCCGTCTTGA 58.502 50.000 0.00 0.00 0.00 3.02
83 84 0.512952 CCTTGAAGTTCGCCGTCTTG 59.487 55.000 0.00 0.00 0.00 3.02
84 85 0.391597 TCCTTGAAGTTCGCCGTCTT 59.608 50.000 0.00 0.00 0.00 3.01
85 86 0.319641 GTCCTTGAAGTTCGCCGTCT 60.320 55.000 0.00 0.00 0.00 4.18
86 87 1.289800 GGTCCTTGAAGTTCGCCGTC 61.290 60.000 0.00 0.00 0.00 4.79
87 88 1.301479 GGTCCTTGAAGTTCGCCGT 60.301 57.895 0.00 0.00 0.00 5.68
88 89 0.882927 TTGGTCCTTGAAGTTCGCCG 60.883 55.000 0.00 0.00 0.00 6.46
89 90 1.314730 TTTGGTCCTTGAAGTTCGCC 58.685 50.000 0.00 0.00 0.00 5.54
90 91 2.357952 AGTTTTGGTCCTTGAAGTTCGC 59.642 45.455 0.00 0.00 0.00 4.70
91 92 5.744666 TTAGTTTTGGTCCTTGAAGTTCG 57.255 39.130 0.00 0.00 0.00 3.95
92 93 6.978659 CCTTTTAGTTTTGGTCCTTGAAGTTC 59.021 38.462 0.00 0.00 0.00 3.01
93 94 6.629515 GCCTTTTAGTTTTGGTCCTTGAAGTT 60.630 38.462 0.00 0.00 0.00 2.66
94 95 5.163447 GCCTTTTAGTTTTGGTCCTTGAAGT 60.163 40.000 0.00 0.00 0.00 3.01
95 96 5.289595 GCCTTTTAGTTTTGGTCCTTGAAG 58.710 41.667 0.00 0.00 0.00 3.02
96 97 4.100344 GGCCTTTTAGTTTTGGTCCTTGAA 59.900 41.667 0.00 0.00 0.00 2.69
97 98 3.639561 GGCCTTTTAGTTTTGGTCCTTGA 59.360 43.478 0.00 0.00 0.00 3.02
98 99 3.386402 TGGCCTTTTAGTTTTGGTCCTTG 59.614 43.478 3.32 0.00 0.00 3.61
99 100 3.648739 TGGCCTTTTAGTTTTGGTCCTT 58.351 40.909 3.32 0.00 0.00 3.36
100 101 3.322191 TGGCCTTTTAGTTTTGGTCCT 57.678 42.857 3.32 0.00 0.00 3.85
101 102 3.576550 TGATGGCCTTTTAGTTTTGGTCC 59.423 43.478 3.32 0.00 0.00 4.46
102 103 4.038642 TGTGATGGCCTTTTAGTTTTGGTC 59.961 41.667 3.32 0.00 0.00 4.02
103 104 3.964031 TGTGATGGCCTTTTAGTTTTGGT 59.036 39.130 3.32 0.00 0.00 3.67
104 105 4.599047 TGTGATGGCCTTTTAGTTTTGG 57.401 40.909 3.32 0.00 0.00 3.28
105 106 5.047092 AGGATGTGATGGCCTTTTAGTTTTG 60.047 40.000 3.32 0.00 0.00 2.44
106 107 5.086621 AGGATGTGATGGCCTTTTAGTTTT 58.913 37.500 3.32 0.00 0.00 2.43
107 108 4.677182 AGGATGTGATGGCCTTTTAGTTT 58.323 39.130 3.32 0.00 0.00 2.66
108 109 4.322057 AGGATGTGATGGCCTTTTAGTT 57.678 40.909 3.32 0.00 0.00 2.24
109 110 4.019174 CAAGGATGTGATGGCCTTTTAGT 58.981 43.478 3.32 0.00 39.91 2.24
110 111 4.096984 GTCAAGGATGTGATGGCCTTTTAG 59.903 45.833 3.32 0.00 39.91 1.85
111 112 4.016444 GTCAAGGATGTGATGGCCTTTTA 58.984 43.478 3.32 0.00 39.91 1.52
112 113 2.827921 GTCAAGGATGTGATGGCCTTTT 59.172 45.455 3.32 0.00 39.91 2.27
113 114 2.225091 TGTCAAGGATGTGATGGCCTTT 60.225 45.455 3.32 0.00 39.91 3.11
114 115 1.355381 TGTCAAGGATGTGATGGCCTT 59.645 47.619 3.32 0.00 42.52 4.35
115 116 0.994247 TGTCAAGGATGTGATGGCCT 59.006 50.000 3.32 0.00 0.00 5.19
116 117 1.838112 TTGTCAAGGATGTGATGGCC 58.162 50.000 0.00 0.00 0.00 5.36
117 118 2.480759 GCATTGTCAAGGATGTGATGGC 60.481 50.000 0.42 0.00 0.00 4.40
118 119 3.021695 AGCATTGTCAAGGATGTGATGG 58.978 45.455 0.42 0.00 0.00 3.51
119 120 4.421058 CAAGCATTGTCAAGGATGTGATG 58.579 43.478 0.42 0.00 42.34 3.07
120 121 4.713824 CAAGCATTGTCAAGGATGTGAT 57.286 40.909 0.42 0.00 42.34 3.06
145 146 9.202273 CAATAAAATCCATCCTTTGTCGAAAAA 57.798 29.630 0.00 0.00 0.00 1.94
146 147 8.364142 ACAATAAAATCCATCCTTTGTCGAAAA 58.636 29.630 0.00 0.00 0.00 2.29
147 148 7.891561 ACAATAAAATCCATCCTTTGTCGAAA 58.108 30.769 0.00 0.00 0.00 3.46
148 149 7.393234 AGACAATAAAATCCATCCTTTGTCGAA 59.607 33.333 0.00 0.00 43.70 3.71
149 150 6.884295 AGACAATAAAATCCATCCTTTGTCGA 59.116 34.615 0.00 0.00 43.70 4.20
150 151 7.088589 AGACAATAAAATCCATCCTTTGTCG 57.911 36.000 0.00 0.00 43.70 4.35
151 152 8.055279 TGAGACAATAAAATCCATCCTTTGTC 57.945 34.615 0.00 0.00 40.91 3.18
152 153 8.421249 TTGAGACAATAAAATCCATCCTTTGT 57.579 30.769 0.00 0.00 0.00 2.83
153 154 9.709495 TTTTGAGACAATAAAATCCATCCTTTG 57.291 29.630 0.00 0.00 0.00 2.77
168 169 8.195436 CCTCATGATGCTTTATTTTGAGACAAT 58.805 33.333 0.00 0.00 33.37 2.71
169 170 7.363181 CCCTCATGATGCTTTATTTTGAGACAA 60.363 37.037 0.00 0.00 33.37 3.18
170 171 6.095860 CCCTCATGATGCTTTATTTTGAGACA 59.904 38.462 0.00 0.00 33.37 3.41
171 172 6.096001 ACCCTCATGATGCTTTATTTTGAGAC 59.904 38.462 0.00 0.00 33.37 3.36
172 173 6.189859 ACCCTCATGATGCTTTATTTTGAGA 58.810 36.000 0.00 0.00 33.37 3.27
173 174 6.461110 ACCCTCATGATGCTTTATTTTGAG 57.539 37.500 0.00 0.00 32.29 3.02
174 175 9.639563 TTATACCCTCATGATGCTTTATTTTGA 57.360 29.630 0.00 0.00 0.00 2.69
175 176 9.903682 CTTATACCCTCATGATGCTTTATTTTG 57.096 33.333 0.00 0.00 0.00 2.44
176 177 8.579863 GCTTATACCCTCATGATGCTTTATTTT 58.420 33.333 0.00 0.00 0.00 1.82
177 178 7.725397 TGCTTATACCCTCATGATGCTTTATTT 59.275 33.333 0.00 0.00 0.00 1.40
178 179 7.175641 GTGCTTATACCCTCATGATGCTTTATT 59.824 37.037 0.00 0.00 0.00 1.40
179 180 6.656693 GTGCTTATACCCTCATGATGCTTTAT 59.343 38.462 0.00 0.00 0.00 1.40
180 181 5.997746 GTGCTTATACCCTCATGATGCTTTA 59.002 40.000 0.00 0.00 0.00 1.85
181 182 4.823989 GTGCTTATACCCTCATGATGCTTT 59.176 41.667 0.00 0.00 0.00 3.51
182 183 4.141413 TGTGCTTATACCCTCATGATGCTT 60.141 41.667 0.00 0.00 0.00 3.91
183 184 3.392285 TGTGCTTATACCCTCATGATGCT 59.608 43.478 0.00 0.00 0.00 3.79
184 185 3.743521 TGTGCTTATACCCTCATGATGC 58.256 45.455 0.00 0.00 0.00 3.91
185 186 5.999600 TCATTGTGCTTATACCCTCATGATG 59.000 40.000 0.00 0.00 0.00 3.07
186 187 6.191657 TCATTGTGCTTATACCCTCATGAT 57.808 37.500 0.00 0.00 0.00 2.45
187 188 5.614308 CTCATTGTGCTTATACCCTCATGA 58.386 41.667 0.00 0.00 0.00 3.07
188 189 4.214971 GCTCATTGTGCTTATACCCTCATG 59.785 45.833 3.52 0.00 0.00 3.07
189 190 4.141413 TGCTCATTGTGCTTATACCCTCAT 60.141 41.667 11.58 0.00 0.00 2.90
190 191 3.199727 TGCTCATTGTGCTTATACCCTCA 59.800 43.478 11.58 0.00 0.00 3.86
191 192 3.561725 GTGCTCATTGTGCTTATACCCTC 59.438 47.826 11.58 0.00 0.00 4.30
192 193 3.054434 TGTGCTCATTGTGCTTATACCCT 60.054 43.478 11.58 0.00 0.00 4.34
193 194 3.065371 GTGTGCTCATTGTGCTTATACCC 59.935 47.826 11.58 0.00 0.00 3.69
194 195 3.689161 TGTGTGCTCATTGTGCTTATACC 59.311 43.478 11.58 0.00 0.00 2.73
195 196 4.728882 GCTGTGTGCTCATTGTGCTTATAC 60.729 45.833 11.58 2.82 38.95 1.47
196 197 3.374988 GCTGTGTGCTCATTGTGCTTATA 59.625 43.478 11.58 0.00 38.95 0.98
197 198 2.163010 GCTGTGTGCTCATTGTGCTTAT 59.837 45.455 11.58 0.00 38.95 1.73
198 199 1.536766 GCTGTGTGCTCATTGTGCTTA 59.463 47.619 11.58 0.00 38.95 3.09
199 200 0.313043 GCTGTGTGCTCATTGTGCTT 59.687 50.000 11.58 0.00 38.95 3.91
200 201 1.954528 GCTGTGTGCTCATTGTGCT 59.045 52.632 11.58 0.00 38.95 4.40
201 202 4.546637 GCTGTGTGCTCATTGTGC 57.453 55.556 3.79 3.79 38.95 4.57
210 211 2.323580 GCAGAGGTCAGCTGTGTGC 61.324 63.158 14.67 11.32 43.29 4.57
211 212 0.321387 ATGCAGAGGTCAGCTGTGTG 60.321 55.000 14.67 4.53 35.81 3.82
212 213 1.206610 CTATGCAGAGGTCAGCTGTGT 59.793 52.381 14.67 0.00 35.81 3.72
213 214 1.937278 CTATGCAGAGGTCAGCTGTG 58.063 55.000 14.67 5.17 35.81 3.66
214 215 0.177604 GCTATGCAGAGGTCAGCTGT 59.822 55.000 14.67 0.00 35.81 4.40
215 216 0.464870 AGCTATGCAGAGGTCAGCTG 59.535 55.000 7.34 7.63 40.92 4.24
216 217 1.962807 CTAGCTATGCAGAGGTCAGCT 59.037 52.381 17.53 12.63 44.43 4.24
217 218 1.686052 ACTAGCTATGCAGAGGTCAGC 59.314 52.381 17.53 5.76 0.00 4.26
218 219 2.692557 ACACTAGCTATGCAGAGGTCAG 59.307 50.000 17.53 14.29 0.00 3.51
219 220 2.428530 CACACTAGCTATGCAGAGGTCA 59.571 50.000 17.53 3.17 0.00 4.02
220 221 2.428890 ACACACTAGCTATGCAGAGGTC 59.571 50.000 17.53 0.00 0.00 3.85
221 222 2.461695 ACACACTAGCTATGCAGAGGT 58.538 47.619 18.10 18.10 0.00 3.85
222 223 3.381590 TGTACACACTAGCTATGCAGAGG 59.618 47.826 10.92 0.00 0.00 3.69
223 224 4.355437 GTGTACACACTAGCTATGCAGAG 58.645 47.826 21.14 3.34 43.25 3.35
224 225 3.130516 GGTGTACACACTAGCTATGCAGA 59.869 47.826 26.51 0.00 45.73 4.26
225 226 3.131223 AGGTGTACACACTAGCTATGCAG 59.869 47.826 26.51 0.00 45.73 4.41
226 227 3.096852 AGGTGTACACACTAGCTATGCA 58.903 45.455 26.51 0.00 45.73 3.96
227 228 3.491104 GGAGGTGTACACACTAGCTATGC 60.491 52.174 26.51 5.95 45.73 3.14
228 229 3.699538 TGGAGGTGTACACACTAGCTATG 59.300 47.826 26.51 0.00 45.73 2.23
229 230 3.977312 TGGAGGTGTACACACTAGCTAT 58.023 45.455 26.51 2.60 45.73 2.97
230 231 3.444792 TGGAGGTGTACACACTAGCTA 57.555 47.619 26.51 6.56 45.73 3.32
231 232 2.299297 GTTGGAGGTGTACACACTAGCT 59.701 50.000 26.51 14.18 45.73 3.32
232 233 2.036733 TGTTGGAGGTGTACACACTAGC 59.963 50.000 26.51 18.32 45.73 3.42
233 234 4.021456 TGATGTTGGAGGTGTACACACTAG 60.021 45.833 26.51 0.00 45.73 2.57
234 235 3.898741 TGATGTTGGAGGTGTACACACTA 59.101 43.478 26.51 14.90 45.73 2.74
235 236 2.703536 TGATGTTGGAGGTGTACACACT 59.296 45.455 26.51 20.02 45.73 3.55
236 237 3.120321 TGATGTTGGAGGTGTACACAC 57.880 47.619 26.51 18.61 45.72 3.82
237 238 3.118223 TGTTGATGTTGGAGGTGTACACA 60.118 43.478 26.51 5.44 0.00 3.72
238 239 3.250040 GTGTTGATGTTGGAGGTGTACAC 59.750 47.826 18.01 18.01 0.00 2.90
239 240 3.118223 TGTGTTGATGTTGGAGGTGTACA 60.118 43.478 0.00 0.00 0.00 2.90
240 241 3.472652 TGTGTTGATGTTGGAGGTGTAC 58.527 45.455 0.00 0.00 0.00 2.90
241 242 3.847671 TGTGTTGATGTTGGAGGTGTA 57.152 42.857 0.00 0.00 0.00 2.90
242 243 2.727123 TGTGTTGATGTTGGAGGTGT 57.273 45.000 0.00 0.00 0.00 4.16
243 244 2.352030 GCATGTGTTGATGTTGGAGGTG 60.352 50.000 0.00 0.00 0.00 4.00
244 245 1.888512 GCATGTGTTGATGTTGGAGGT 59.111 47.619 0.00 0.00 0.00 3.85
245 246 1.887854 TGCATGTGTTGATGTTGGAGG 59.112 47.619 0.00 0.00 0.00 4.30
246 247 2.293955 TGTGCATGTGTTGATGTTGGAG 59.706 45.455 0.00 0.00 0.00 3.86
247 248 2.034432 GTGTGCATGTGTTGATGTTGGA 59.966 45.455 0.00 0.00 0.00 3.53
248 249 2.223758 TGTGTGCATGTGTTGATGTTGG 60.224 45.455 0.00 0.00 0.00 3.77
249 250 3.081329 TGTGTGCATGTGTTGATGTTG 57.919 42.857 0.00 0.00 0.00 3.33
250 251 3.797451 TTGTGTGCATGTGTTGATGTT 57.203 38.095 0.00 0.00 0.00 2.71
251 252 3.797451 TTTGTGTGCATGTGTTGATGT 57.203 38.095 0.00 0.00 0.00 3.06
252 253 4.329256 TGTTTTTGTGTGCATGTGTTGATG 59.671 37.500 0.00 0.00 0.00 3.07
253 254 4.502016 TGTTTTTGTGTGCATGTGTTGAT 58.498 34.783 0.00 0.00 0.00 2.57
254 255 3.917988 TGTTTTTGTGTGCATGTGTTGA 58.082 36.364 0.00 0.00 0.00 3.18
255 256 4.658713 TTGTTTTTGTGTGCATGTGTTG 57.341 36.364 0.00 0.00 0.00 3.33
256 257 4.083590 GGTTTGTTTTTGTGTGCATGTGTT 60.084 37.500 0.00 0.00 0.00 3.32
257 258 3.434984 GGTTTGTTTTTGTGTGCATGTGT 59.565 39.130 0.00 0.00 0.00 3.72
258 259 3.434641 TGGTTTGTTTTTGTGTGCATGTG 59.565 39.130 0.00 0.00 0.00 3.21
259 260 3.668447 TGGTTTGTTTTTGTGTGCATGT 58.332 36.364 0.00 0.00 0.00 3.21
260 261 3.485546 GCTGGTTTGTTTTTGTGTGCATG 60.486 43.478 0.00 0.00 0.00 4.06
261 262 2.677337 GCTGGTTTGTTTTTGTGTGCAT 59.323 40.909 0.00 0.00 0.00 3.96
262 263 2.072298 GCTGGTTTGTTTTTGTGTGCA 58.928 42.857 0.00 0.00 0.00 4.57
263 264 2.072298 TGCTGGTTTGTTTTTGTGTGC 58.928 42.857 0.00 0.00 0.00 4.57
264 265 4.943142 ATTGCTGGTTTGTTTTTGTGTG 57.057 36.364 0.00 0.00 0.00 3.82
265 266 4.570369 GCTATTGCTGGTTTGTTTTTGTGT 59.430 37.500 0.00 0.00 36.03 3.72
266 267 4.569966 TGCTATTGCTGGTTTGTTTTTGTG 59.430 37.500 0.00 0.00 40.48 3.33
267 268 4.764172 TGCTATTGCTGGTTTGTTTTTGT 58.236 34.783 0.00 0.00 40.48 2.83
268 269 5.731599 TTGCTATTGCTGGTTTGTTTTTG 57.268 34.783 0.00 0.00 40.48 2.44
269 270 5.879777 ACTTTGCTATTGCTGGTTTGTTTTT 59.120 32.000 0.00 0.00 40.48 1.94
270 271 5.427378 ACTTTGCTATTGCTGGTTTGTTTT 58.573 33.333 0.00 0.00 40.48 2.43
271 272 5.022282 ACTTTGCTATTGCTGGTTTGTTT 57.978 34.783 0.00 0.00 40.48 2.83
272 273 4.099266 TGACTTTGCTATTGCTGGTTTGTT 59.901 37.500 0.00 0.00 40.48 2.83
273 274 3.636300 TGACTTTGCTATTGCTGGTTTGT 59.364 39.130 0.00 0.00 40.48 2.83
274 275 4.241590 TGACTTTGCTATTGCTGGTTTG 57.758 40.909 0.00 0.00 40.48 2.93
275 276 6.780457 ATATGACTTTGCTATTGCTGGTTT 57.220 33.333 0.00 0.00 40.48 3.27
276 277 7.775093 TCTTATATGACTTTGCTATTGCTGGTT 59.225 33.333 0.00 0.00 40.48 3.67
277 278 7.227512 GTCTTATATGACTTTGCTATTGCTGGT 59.772 37.037 10.70 0.00 35.77 4.00
278 279 7.443575 AGTCTTATATGACTTTGCTATTGCTGG 59.556 37.037 13.99 0.00 44.01 4.85
279 280 8.375608 AGTCTTATATGACTTTGCTATTGCTG 57.624 34.615 13.99 0.00 44.01 4.41
286 287 9.535878 GTAGCTTTAGTCTTATATGACTTTGCT 57.464 33.333 26.31 26.31 44.01 3.91
287 288 8.480853 CGTAGCTTTAGTCTTATATGACTTTGC 58.519 37.037 22.23 20.97 44.01 3.68
309 310 4.737054 TCTTTTTCCTTACCTACGCGTAG 58.263 43.478 34.05 34.05 0.00 3.51
310 311 4.782019 TCTTTTTCCTTACCTACGCGTA 57.218 40.909 19.40 19.40 0.00 4.42
311 312 3.665745 TCTTTTTCCTTACCTACGCGT 57.334 42.857 19.17 19.17 0.00 6.01
312 313 4.996062 TTTCTTTTTCCTTACCTACGCG 57.004 40.909 3.53 3.53 0.00 6.01
332 333 2.438868 GCAGATCGCTTTGGGTTTTT 57.561 45.000 2.84 0.00 37.77 1.94
343 344 1.533338 CCAAATTGCAGAGCAGATCGC 60.533 52.381 1.92 1.92 40.61 4.58
344 345 2.011947 TCCAAATTGCAGAGCAGATCG 58.988 47.619 0.00 0.00 40.61 3.69
345 346 4.157289 TCTTTCCAAATTGCAGAGCAGATC 59.843 41.667 0.00 0.00 40.61 2.75
346 347 4.084287 TCTTTCCAAATTGCAGAGCAGAT 58.916 39.130 0.00 0.00 40.61 2.90
347 348 3.489355 TCTTTCCAAATTGCAGAGCAGA 58.511 40.909 0.00 0.00 40.61 4.26
348 349 3.834610 CTCTTTCCAAATTGCAGAGCAG 58.165 45.455 3.27 0.00 40.61 4.24
349 350 3.928727 CTCTTTCCAAATTGCAGAGCA 57.071 42.857 3.27 0.00 36.47 4.26
351 352 2.485426 TCGCTCTTTCCAAATTGCAGAG 59.515 45.455 9.42 9.42 35.11 3.35
352 353 2.503331 TCGCTCTTTCCAAATTGCAGA 58.497 42.857 0.00 0.00 0.00 4.26
353 354 2.995466 TCGCTCTTTCCAAATTGCAG 57.005 45.000 0.00 0.00 0.00 4.41
354 355 3.724508 TTTCGCTCTTTCCAAATTGCA 57.275 38.095 0.00 0.00 0.00 4.08
355 356 3.181527 GCATTTCGCTCTTTCCAAATTGC 60.182 43.478 0.00 0.00 37.77 3.56
356 357 3.368843 GGCATTTCGCTCTTTCCAAATTG 59.631 43.478 0.00 0.00 41.91 2.32
357 358 3.006752 TGGCATTTCGCTCTTTCCAAATT 59.993 39.130 0.00 0.00 41.91 1.82
358 359 2.562298 TGGCATTTCGCTCTTTCCAAAT 59.438 40.909 0.00 0.00 41.91 2.32
359 360 1.959985 TGGCATTTCGCTCTTTCCAAA 59.040 42.857 0.00 0.00 41.91 3.28
360 361 1.541147 CTGGCATTTCGCTCTTTCCAA 59.459 47.619 0.00 0.00 41.91 3.53
361 362 1.167851 CTGGCATTTCGCTCTTTCCA 58.832 50.000 0.00 0.00 41.91 3.53
362 363 1.399791 CTCTGGCATTTCGCTCTTTCC 59.600 52.381 0.00 0.00 41.91 3.13
363 364 2.079925 ACTCTGGCATTTCGCTCTTTC 58.920 47.619 0.00 0.00 41.91 2.62
364 365 2.079925 GACTCTGGCATTTCGCTCTTT 58.920 47.619 0.00 0.00 41.91 2.52
365 366 1.277557 AGACTCTGGCATTTCGCTCTT 59.722 47.619 0.00 0.00 41.91 2.85
366 367 0.901124 AGACTCTGGCATTTCGCTCT 59.099 50.000 0.00 0.00 41.91 4.09
367 368 1.663135 GAAGACTCTGGCATTTCGCTC 59.337 52.381 0.00 0.00 41.91 5.03
368 369 1.677217 GGAAGACTCTGGCATTTCGCT 60.677 52.381 0.00 0.00 41.91 4.93
369 370 0.729690 GGAAGACTCTGGCATTTCGC 59.270 55.000 0.00 0.00 41.28 4.70
370 371 1.002366 CGGAAGACTCTGGCATTTCG 58.998 55.000 0.00 0.00 0.00 3.46
371 372 0.729690 GCGGAAGACTCTGGCATTTC 59.270 55.000 0.00 0.00 0.00 2.17
372 373 0.036732 TGCGGAAGACTCTGGCATTT 59.963 50.000 0.00 0.00 0.00 2.32
373 374 0.036732 TTGCGGAAGACTCTGGCATT 59.963 50.000 0.00 0.00 33.22 3.56
374 375 0.254178 ATTGCGGAAGACTCTGGCAT 59.746 50.000 0.00 0.00 33.22 4.40
375 376 0.391661 GATTGCGGAAGACTCTGGCA 60.392 55.000 0.00 0.00 31.90 4.92
376 377 0.107945 AGATTGCGGAAGACTCTGGC 60.108 55.000 0.00 0.00 0.00 4.85
377 378 1.205655 TGAGATTGCGGAAGACTCTGG 59.794 52.381 20.44 0.00 0.00 3.86
378 379 2.662006 TGAGATTGCGGAAGACTCTG 57.338 50.000 20.44 0.00 0.00 3.35
379 380 2.300152 TGTTGAGATTGCGGAAGACTCT 59.700 45.455 20.44 9.03 0.00 3.24
380 381 2.413453 GTGTTGAGATTGCGGAAGACTC 59.587 50.000 15.74 15.74 0.00 3.36
381 382 2.417719 GTGTTGAGATTGCGGAAGACT 58.582 47.619 0.00 0.00 0.00 3.24
382 383 1.464997 GGTGTTGAGATTGCGGAAGAC 59.535 52.381 0.00 0.00 0.00 3.01
383 384 1.610624 GGGTGTTGAGATTGCGGAAGA 60.611 52.381 0.00 0.00 0.00 2.87
384 385 0.804989 GGGTGTTGAGATTGCGGAAG 59.195 55.000 0.00 0.00 0.00 3.46
385 386 0.608035 GGGGTGTTGAGATTGCGGAA 60.608 55.000 0.00 0.00 0.00 4.30
386 387 1.002624 GGGGTGTTGAGATTGCGGA 60.003 57.895 0.00 0.00 0.00 5.54
387 388 2.398554 CGGGGTGTTGAGATTGCGG 61.399 63.158 0.00 0.00 0.00 5.69
388 389 0.744414 ATCGGGGTGTTGAGATTGCG 60.744 55.000 0.00 0.00 0.00 4.85
389 390 0.734889 CATCGGGGTGTTGAGATTGC 59.265 55.000 0.00 0.00 0.00 3.56
390 391 2.401583 TCATCGGGGTGTTGAGATTG 57.598 50.000 0.00 0.00 0.00 2.67
391 392 2.239654 ACATCATCGGGGTGTTGAGATT 59.760 45.455 0.00 0.00 30.14 2.40
392 393 1.839994 ACATCATCGGGGTGTTGAGAT 59.160 47.619 0.00 0.00 30.14 2.75
393 394 1.275666 ACATCATCGGGGTGTTGAGA 58.724 50.000 0.00 0.00 30.14 3.27
394 395 2.113860 AACATCATCGGGGTGTTGAG 57.886 50.000 5.95 0.00 34.98 3.02
397 398 1.351017 AGTCAACATCATCGGGGTGTT 59.649 47.619 1.48 1.48 36.57 3.32
398 399 0.984230 AGTCAACATCATCGGGGTGT 59.016 50.000 0.00 0.00 0.00 4.16
399 400 1.339055 ACAGTCAACATCATCGGGGTG 60.339 52.381 0.00 0.00 0.00 4.61
400 401 0.984230 ACAGTCAACATCATCGGGGT 59.016 50.000 0.00 0.00 0.00 4.95
401 402 2.936498 GTTACAGTCAACATCATCGGGG 59.064 50.000 0.00 0.00 0.00 5.73
402 403 2.603110 CGTTACAGTCAACATCATCGGG 59.397 50.000 0.00 0.00 0.00 5.14
403 404 3.507786 TCGTTACAGTCAACATCATCGG 58.492 45.455 0.00 0.00 0.00 4.18
404 405 4.857037 TCTTCGTTACAGTCAACATCATCG 59.143 41.667 0.00 0.00 0.00 3.84
405 406 6.531594 TGATCTTCGTTACAGTCAACATCATC 59.468 38.462 0.00 0.00 0.00 2.92
406 407 6.398095 TGATCTTCGTTACAGTCAACATCAT 58.602 36.000 0.00 0.00 0.00 2.45
407 408 5.778862 TGATCTTCGTTACAGTCAACATCA 58.221 37.500 0.00 0.00 0.00 3.07
408 409 6.183360 CCTTGATCTTCGTTACAGTCAACATC 60.183 42.308 0.00 0.00 0.00 3.06
409 410 5.639506 CCTTGATCTTCGTTACAGTCAACAT 59.360 40.000 0.00 0.00 0.00 2.71
410 411 4.988540 CCTTGATCTTCGTTACAGTCAACA 59.011 41.667 0.00 0.00 0.00 3.33
411 412 5.227908 TCCTTGATCTTCGTTACAGTCAAC 58.772 41.667 0.00 0.00 0.00 3.18
412 413 5.462530 TCCTTGATCTTCGTTACAGTCAA 57.537 39.130 0.00 0.00 0.00 3.18
413 414 4.082190 CCTCCTTGATCTTCGTTACAGTCA 60.082 45.833 0.00 0.00 0.00 3.41
414 415 4.158025 TCCTCCTTGATCTTCGTTACAGTC 59.842 45.833 0.00 0.00 0.00 3.51
415 416 4.087182 TCCTCCTTGATCTTCGTTACAGT 58.913 43.478 0.00 0.00 0.00 3.55
416 417 4.440802 CCTCCTCCTTGATCTTCGTTACAG 60.441 50.000 0.00 0.00 0.00 2.74
417 418 3.447586 CCTCCTCCTTGATCTTCGTTACA 59.552 47.826 0.00 0.00 0.00 2.41
418 419 3.181474 CCCTCCTCCTTGATCTTCGTTAC 60.181 52.174 0.00 0.00 0.00 2.50
419 420 3.031736 CCCTCCTCCTTGATCTTCGTTA 58.968 50.000 0.00 0.00 0.00 3.18
420 421 1.834263 CCCTCCTCCTTGATCTTCGTT 59.166 52.381 0.00 0.00 0.00 3.85
421 422 1.490574 CCCTCCTCCTTGATCTTCGT 58.509 55.000 0.00 0.00 0.00 3.85
422 423 0.105778 GCCCTCCTCCTTGATCTTCG 59.894 60.000 0.00 0.00 0.00 3.79
423 424 0.472044 GGCCCTCCTCCTTGATCTTC 59.528 60.000 0.00 0.00 0.00 2.87
424 425 1.341156 CGGCCCTCCTCCTTGATCTT 61.341 60.000 0.00 0.00 0.00 2.40
425 426 1.764054 CGGCCCTCCTCCTTGATCT 60.764 63.158 0.00 0.00 0.00 2.75
426 427 1.627297 AACGGCCCTCCTCCTTGATC 61.627 60.000 0.00 0.00 0.00 2.92
427 428 1.208165 AAACGGCCCTCCTCCTTGAT 61.208 55.000 0.00 0.00 0.00 2.57
458 459 2.320681 TACTCAAGTGTGTAGCCCCT 57.679 50.000 0.00 0.00 0.00 4.79
599 602 1.402896 CGGAAGCAGGCCTATGGAGA 61.403 60.000 3.98 0.00 0.00 3.71
730 733 4.804420 ATGCGCTCCCCCTCCTCA 62.804 66.667 9.73 0.00 0.00 3.86
731 734 3.483869 AATGCGCTCCCCCTCCTC 61.484 66.667 9.73 0.00 0.00 3.71
732 735 3.801997 CAATGCGCTCCCCCTCCT 61.802 66.667 9.73 0.00 0.00 3.69
733 736 3.797353 TCAATGCGCTCCCCCTCC 61.797 66.667 9.73 0.00 0.00 4.30
734 737 2.514824 GTCAATGCGCTCCCCCTC 60.515 66.667 9.73 0.00 0.00 4.30
735 738 4.473520 CGTCAATGCGCTCCCCCT 62.474 66.667 9.73 0.00 0.00 4.79
736 739 3.969250 TTCGTCAATGCGCTCCCCC 62.969 63.158 9.73 0.00 0.00 5.40
737 740 2.435938 TTCGTCAATGCGCTCCCC 60.436 61.111 9.73 0.00 0.00 4.81
738 741 1.424493 CTCTTCGTCAATGCGCTCCC 61.424 60.000 9.73 0.00 0.00 4.30
739 742 0.458543 TCTCTTCGTCAATGCGCTCC 60.459 55.000 9.73 0.00 0.00 4.70
740 743 0.919981 CTCTCTTCGTCAATGCGCTC 59.080 55.000 9.73 0.00 0.00 5.03
741 744 0.528017 TCTCTCTTCGTCAATGCGCT 59.472 50.000 9.73 0.00 0.00 5.92
742 745 0.642800 GTCTCTCTTCGTCAATGCGC 59.357 55.000 0.00 0.00 0.00 6.09
743 746 2.270275 AGTCTCTCTTCGTCAATGCG 57.730 50.000 0.00 0.00 0.00 4.73
765 768 8.649841 AGTATTGATGCGAAATCAAACAAATTG 58.350 29.630 15.28 0.00 40.84 2.32
861 1118 1.988107 AGGAAGGAGAGTGATTTGGCA 59.012 47.619 0.00 0.00 0.00 4.92
872 1129 0.341258 AGATGGGCAGAGGAAGGAGA 59.659 55.000 0.00 0.00 0.00 3.71
912 1169 6.196724 CGGAACACAAACGATAAGAGATACTC 59.803 42.308 0.00 0.00 0.00 2.59
914 1171 5.803967 ACGGAACACAAACGATAAGAGATAC 59.196 40.000 0.00 0.00 0.00 2.24
937 1205 5.957796 CGTATACGGAGAAGAATTTGCAAAC 59.042 40.000 15.41 2.49 35.37 2.93
938 1206 5.870433 TCGTATACGGAGAAGAATTTGCAAA 59.130 36.000 24.18 15.44 40.29 3.68
981 1249 1.746470 TGATGCAAGATCAGCAGGTG 58.254 50.000 16.37 0.00 46.36 4.00
983 1251 2.290916 GACATGATGCAAGATCAGCAGG 59.709 50.000 16.37 9.48 46.36 4.85
1034 1302 0.961857 ATTGTTGCCGCTGCTCATGA 60.962 50.000 0.70 0.00 38.71 3.07
1119 1387 1.407936 CGTCCACATCCATCCTCTCT 58.592 55.000 0.00 0.00 0.00 3.10
1131 1399 2.655073 ATCATGACCGCCGTCCACA 61.655 57.895 0.00 0.00 38.32 4.17
1157 1425 0.942410 GCCGTTGCTGTAGTCGTCAA 60.942 55.000 0.00 0.00 33.53 3.18
1158 1426 1.372499 GCCGTTGCTGTAGTCGTCA 60.372 57.895 0.00 0.00 33.53 4.35
1686 1975 7.041984 GGCTAGTTAGAATATACAAACTGCCAC 60.042 40.741 19.05 6.12 41.10 5.01
1689 1978 7.307455 GCTGGCTAGTTAGAATATACAAACTGC 60.307 40.741 0.00 7.65 34.23 4.40
1808 2188 0.608856 ATCTCCCGTTGCAATGCACA 60.609 50.000 7.72 0.00 38.71 4.57
1851 2231 8.987890 GGTTTTGCTTGTACACATAATTTTCAT 58.012 29.630 0.00 0.00 0.00 2.57
1855 2235 6.928492 CAGGGTTTTGCTTGTACACATAATTT 59.072 34.615 0.00 0.00 0.00 1.82
1862 2242 2.425668 ACACAGGGTTTTGCTTGTACAC 59.574 45.455 0.00 0.00 0.00 2.90
1866 2246 0.175531 GCACACAGGGTTTTGCTTGT 59.824 50.000 0.00 0.00 32.00 3.16
1915 2295 3.118454 CCTTCACACGCGGCGAAT 61.118 61.111 30.94 13.48 0.00 3.34
1968 2350 7.817478 TGATGACGTGACATAACTCTTAAATGT 59.183 33.333 0.00 0.00 36.57 2.71
2008 2391 7.682787 AGAGTAGATTGAATAACTCATGGGT 57.317 36.000 17.39 0.00 40.65 4.51
2044 2428 5.823045 ACCTTAGAATCCCATCGATTGAAAC 59.177 40.000 0.00 0.00 41.47 2.78
2055 2439 7.182026 TCAGAAACTTCATACCTTAGAATCCCA 59.818 37.037 0.00 0.00 0.00 4.37
2233 2623 9.609950 AAAAATGTTCGCAAATTCAAATAATGG 57.390 25.926 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.