Multiple sequence alignment - TraesCS4D01G114300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G114300 chr4D 100.000 3103 0 0 1 3103 95277539 95280641 0.000000e+00 5731.0
1 TraesCS4D01G114300 chr4A 93.308 1853 45 22 619 2452 484733077 484731285 0.000000e+00 2662.0
2 TraesCS4D01G114300 chr4A 88.246 553 16 9 4 519 484733643 484733103 1.580000e-172 616.0
3 TraesCS4D01G114300 chr4A 92.708 192 10 2 2895 3085 484731035 484730847 1.100000e-69 274.0
4 TraesCS4D01G114300 chr4A 97.122 139 4 0 2444 2582 484731257 484731119 5.170000e-58 235.0
5 TraesCS4D01G114300 chr4A 94.656 131 7 0 1346 1476 645308493 645308623 1.460000e-48 204.0
6 TraesCS4D01G114300 chr4B 92.649 1714 68 17 766 2446 134812851 134814539 0.000000e+00 2414.0
7 TraesCS4D01G114300 chr4B 91.317 691 37 7 60 727 134811866 134812556 0.000000e+00 922.0
8 TraesCS4D01G114300 chr4B 94.656 131 7 0 1346 1476 590429248 590429118 1.460000e-48 204.0
9 TraesCS4D01G114300 chr4B 86.555 119 16 0 2460 2578 134814592 134814710 6.980000e-27 132.0
10 TraesCS4D01G114300 chr2D 93.123 349 21 1 1238 1586 85755808 85756153 2.760000e-140 508.0
11 TraesCS4D01G114300 chr2D 90.625 288 25 1 2578 2865 325807311 325807596 6.280000e-102 381.0
12 TraesCS4D01G114300 chr3D 93.141 277 19 0 2589 2865 255424393 255424669 1.040000e-109 407.0
13 TraesCS4D01G114300 chr3D 80.342 117 18 3 2467 2579 308818601 308818486 1.980000e-12 84.2
14 TraesCS4D01G114300 chr3B 92.419 277 20 1 2589 2865 377115121 377115396 8.070000e-106 394.0
15 TraesCS4D01G114300 chr3B 91.941 273 22 0 2593 2865 39465143 39464871 1.750000e-102 383.0
16 TraesCS4D01G114300 chr3B 82.609 115 17 3 2467 2579 412701716 412701829 7.080000e-17 99.0
17 TraesCS4D01G114300 chr5D 92.674 273 18 2 2589 2860 451067428 451067157 2.900000e-105 392.0
18 TraesCS4D01G114300 chr5D 85.714 91 11 2 2461 2549 450217012 450217102 9.160000e-16 95.3
19 TraesCS4D01G114300 chr3A 92.086 278 21 1 2589 2865 319962313 319962590 1.040000e-104 390.0
20 TraesCS4D01G114300 chr3A 78.632 117 20 3 2467 2579 428457154 428457039 4.290000e-09 73.1
21 TraesCS4D01G114300 chr2A 92.086 278 21 1 2589 2865 561299040 561298763 1.040000e-104 390.0
22 TraesCS4D01G114300 chr2A 91.459 281 22 2 2586 2865 43540242 43540521 4.850000e-103 385.0
23 TraesCS4D01G114300 chr6D 90.592 287 25 1 2579 2865 327021862 327022146 2.260000e-101 379.0
24 TraesCS4D01G114300 chr6D 89.024 82 6 2 2471 2549 470867776 470867695 7.080000e-17 99.0
25 TraesCS4D01G114300 chr6A 84.348 115 12 3 2470 2578 615699445 615699331 1.180000e-19 108.0
26 TraesCS4D01G114300 chr6A 82.418 91 12 4 2461 2549 101857786 101857874 3.320000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G114300 chr4D 95277539 95280641 3102 False 5731.00 5731 100.000000 1 3103 1 chr4D.!!$F1 3102
1 TraesCS4D01G114300 chr4A 484730847 484733643 2796 True 946.75 2662 92.846000 4 3085 4 chr4A.!!$R1 3081
2 TraesCS4D01G114300 chr4B 134811866 134814710 2844 False 1156.00 2414 90.173667 60 2578 3 chr4B.!!$F1 2518

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
625 693 0.035439 CCTGACCGGCCATGTAAAGT 60.035 55.0 0.0 0.0 0.0 2.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2229 2624 1.201921 GCACAAACTCCTCGCAATACG 60.202 52.381 0.0 0.0 45.62 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 6.687081 AGGTTGAATTAAGACAACGACAAA 57.313 33.333 16.03 0.00 44.68 2.83
74 75 6.567891 CGACAAAAACTATGGAAAGAGGGAAC 60.568 42.308 0.00 0.00 0.00 3.62
76 77 6.782494 ACAAAAACTATGGAAAGAGGGAACAT 59.218 34.615 0.00 0.00 0.00 2.71
137 146 6.321435 TCGCCAATCAAAACTCTATCTCTCTA 59.679 38.462 0.00 0.00 0.00 2.43
232 241 1.515519 GCGTCGCGTGGATAAGTCA 60.516 57.895 5.77 0.00 0.00 3.41
491 548 3.482598 CGATTTTTCTCGCTGCACTGTAG 60.483 47.826 0.00 0.00 0.00 2.74
557 617 2.743538 ATGTGCGTGCGTCATGCT 60.744 55.556 19.73 3.11 45.53 3.79
591 651 0.039437 TCTGTGAAACTCGGCGAGTC 60.039 55.000 39.00 28.20 42.59 3.36
625 693 0.035439 CCTGACCGGCCATGTAAAGT 60.035 55.000 0.00 0.00 0.00 2.66
706 776 1.514678 GCCCATGAAACACACGAGCA 61.515 55.000 0.00 0.00 0.00 4.26
707 777 0.950836 CCCATGAAACACACGAGCAA 59.049 50.000 0.00 0.00 0.00 3.91
708 778 1.336440 CCCATGAAACACACGAGCAAA 59.664 47.619 0.00 0.00 0.00 3.68
709 779 2.384382 CCATGAAACACACGAGCAAAC 58.616 47.619 0.00 0.00 0.00 2.93
710 780 2.223456 CCATGAAACACACGAGCAAACA 60.223 45.455 0.00 0.00 0.00 2.83
711 781 2.535934 TGAAACACACGAGCAAACAC 57.464 45.000 0.00 0.00 0.00 3.32
712 782 1.201976 TGAAACACACGAGCAAACACG 60.202 47.619 0.00 0.00 35.85 4.49
833 1166 7.110043 ACAAACGGTTTTTCCCATTTAGTAA 57.890 32.000 2.79 0.00 0.00 2.24
902 1238 1.953100 ATGGAAATGGCAGGGGAGGG 61.953 60.000 0.00 0.00 0.00 4.30
903 1239 2.280079 GAAATGGCAGGGGAGGGG 59.720 66.667 0.00 0.00 0.00 4.79
904 1240 2.204448 AAATGGCAGGGGAGGGGA 60.204 61.111 0.00 0.00 0.00 4.81
905 1241 2.290021 GAAATGGCAGGGGAGGGGAG 62.290 65.000 0.00 0.00 0.00 4.30
906 1242 4.851252 ATGGCAGGGGAGGGGAGG 62.851 72.222 0.00 0.00 0.00 4.30
957 1293 1.929088 GCTAAACCCCACCCCTCCT 60.929 63.158 0.00 0.00 0.00 3.69
1038 1374 1.151777 CGTATCACCATCCCACACGC 61.152 60.000 0.00 0.00 0.00 5.34
1092 1443 0.964700 TTGCACGCAATCAATCCCAA 59.035 45.000 0.00 0.00 0.00 4.12
1097 1448 0.311790 CGCAATCAATCCCAATCCCG 59.688 55.000 0.00 0.00 0.00 5.14
1145 1499 1.021968 GCCAAGCTTTATACACCCCG 58.978 55.000 0.00 0.00 0.00 5.73
1382 1742 2.573869 CTTCCTCCGCGAGCAAGA 59.426 61.111 8.23 0.00 29.58 3.02
1639 2011 5.400066 AGAAGAAGCAGAAGAAGAGGTAC 57.600 43.478 0.00 0.00 0.00 3.34
2065 2442 4.879598 TCTCGTAGAAGAAACAAAGGTCC 58.120 43.478 0.00 0.00 34.09 4.46
2206 2583 5.731599 TTGCTTTGCAAGTTATTTTGGTG 57.268 34.783 0.00 0.00 43.99 4.17
2207 2584 3.559242 TGCTTTGCAAGTTATTTTGGTGC 59.441 39.130 0.00 0.00 34.76 5.01
2208 2585 3.809279 GCTTTGCAAGTTATTTTGGTGCT 59.191 39.130 0.00 0.00 36.18 4.40
2209 2586 4.987912 GCTTTGCAAGTTATTTTGGTGCTA 59.012 37.500 0.00 0.00 36.18 3.49
2210 2587 5.107491 GCTTTGCAAGTTATTTTGGTGCTAC 60.107 40.000 0.00 0.00 36.18 3.58
2211 2588 5.782893 TTGCAAGTTATTTTGGTGCTACT 57.217 34.783 0.00 0.00 36.18 2.57
2212 2589 6.885952 TTGCAAGTTATTTTGGTGCTACTA 57.114 33.333 0.00 0.00 36.18 1.82
2213 2590 7.461182 TTGCAAGTTATTTTGGTGCTACTAT 57.539 32.000 0.00 0.00 36.18 2.12
2214 2591 7.461182 TGCAAGTTATTTTGGTGCTACTATT 57.539 32.000 0.00 0.00 36.18 1.73
2215 2592 8.568676 TGCAAGTTATTTTGGTGCTACTATTA 57.431 30.769 0.00 0.00 36.18 0.98
2216 2593 9.184523 TGCAAGTTATTTTGGTGCTACTATTAT 57.815 29.630 0.00 0.00 36.18 1.28
2229 2624 9.623350 GGTGCTACTATTATTAGTGCTTAGTAC 57.377 37.037 7.42 6.36 39.08 2.73
2318 2720 0.036105 TGCATGGACAGTGCCACTAG 60.036 55.000 0.00 0.00 41.56 2.57
2345 2747 6.445357 AATTGGTAGGGTTTGCTAATTACG 57.555 37.500 0.00 0.00 32.37 3.18
2372 2774 8.140677 AGTGAGTAACTAAGCTATGTACGTAG 57.859 38.462 16.47 16.47 37.36 3.51
2374 2776 7.225538 GTGAGTAACTAAGCTATGTACGTAGGA 59.774 40.741 21.02 0.00 0.00 2.94
2401 2805 3.734735 GTCAAAGTCCGAGTGTAGTGTTC 59.265 47.826 0.00 0.00 0.00 3.18
2402 2806 3.382227 TCAAAGTCCGAGTGTAGTGTTCA 59.618 43.478 0.00 0.00 0.00 3.18
2408 2812 2.794910 CCGAGTGTAGTGTTCAGTGTTG 59.205 50.000 0.00 0.00 0.00 3.33
2431 2836 5.534654 TGTATGAAGCCTTGTAACTTTGCTT 59.465 36.000 0.00 0.00 44.38 3.91
2432 2837 4.305989 TGAAGCCTTGTAACTTTGCTTG 57.694 40.909 0.00 0.00 41.97 4.01
2582 3026 7.343316 CCTCCTCCCATAATATCGACTTAATCT 59.657 40.741 0.00 0.00 0.00 2.40
2583 3027 8.294954 TCCTCCCATAATATCGACTTAATCTC 57.705 38.462 0.00 0.00 0.00 2.75
2584 3028 8.116669 TCCTCCCATAATATCGACTTAATCTCT 58.883 37.037 0.00 0.00 0.00 3.10
2585 3029 9.409918 CCTCCCATAATATCGACTTAATCTCTA 57.590 37.037 0.00 0.00 0.00 2.43
2587 3031 9.976776 TCCCATAATATCGACTTAATCTCTACT 57.023 33.333 0.00 0.00 0.00 2.57
2597 3041 9.748708 TCGACTTAATCTCTACTTCTCTACTAC 57.251 37.037 0.00 0.00 0.00 2.73
2598 3042 9.754382 CGACTTAATCTCTACTTCTCTACTACT 57.246 37.037 0.00 0.00 0.00 2.57
2636 3080 7.468141 AAGTTATCATTTCACCTTTCTTCCC 57.532 36.000 0.00 0.00 0.00 3.97
2637 3081 6.552008 AGTTATCATTTCACCTTTCTTCCCA 58.448 36.000 0.00 0.00 0.00 4.37
2638 3082 6.434340 AGTTATCATTTCACCTTTCTTCCCAC 59.566 38.462 0.00 0.00 0.00 4.61
2639 3083 3.496331 TCATTTCACCTTTCTTCCCACC 58.504 45.455 0.00 0.00 0.00 4.61
2640 3084 3.117322 TCATTTCACCTTTCTTCCCACCA 60.117 43.478 0.00 0.00 0.00 4.17
2641 3085 3.611025 TTTCACCTTTCTTCCCACCAT 57.389 42.857 0.00 0.00 0.00 3.55
2642 3086 2.879103 TCACCTTTCTTCCCACCATC 57.121 50.000 0.00 0.00 0.00 3.51
2643 3087 1.354368 TCACCTTTCTTCCCACCATCC 59.646 52.381 0.00 0.00 0.00 3.51
2644 3088 0.704664 ACCTTTCTTCCCACCATCCC 59.295 55.000 0.00 0.00 0.00 3.85
2645 3089 1.002857 CCTTTCTTCCCACCATCCCT 58.997 55.000 0.00 0.00 0.00 4.20
2646 3090 1.359130 CCTTTCTTCCCACCATCCCTT 59.641 52.381 0.00 0.00 0.00 3.95
2647 3091 2.621668 CCTTTCTTCCCACCATCCCTTC 60.622 54.545 0.00 0.00 0.00 3.46
2648 3092 0.618458 TTCTTCCCACCATCCCTTCG 59.382 55.000 0.00 0.00 0.00 3.79
2649 3093 0.546747 TCTTCCCACCATCCCTTCGT 60.547 55.000 0.00 0.00 0.00 3.85
2650 3094 0.107654 CTTCCCACCATCCCTTCGTC 60.108 60.000 0.00 0.00 0.00 4.20
2651 3095 1.559065 TTCCCACCATCCCTTCGTCC 61.559 60.000 0.00 0.00 0.00 4.79
2652 3096 2.297895 CCCACCATCCCTTCGTCCA 61.298 63.158 0.00 0.00 0.00 4.02
2653 3097 1.682849 CCACCATCCCTTCGTCCAA 59.317 57.895 0.00 0.00 0.00 3.53
2654 3098 0.676782 CCACCATCCCTTCGTCCAAC 60.677 60.000 0.00 0.00 0.00 3.77
2655 3099 0.676782 CACCATCCCTTCGTCCAACC 60.677 60.000 0.00 0.00 0.00 3.77
2656 3100 0.840722 ACCATCCCTTCGTCCAACCT 60.841 55.000 0.00 0.00 0.00 3.50
2657 3101 0.328258 CCATCCCTTCGTCCAACCTT 59.672 55.000 0.00 0.00 0.00 3.50
2658 3102 1.271926 CCATCCCTTCGTCCAACCTTT 60.272 52.381 0.00 0.00 0.00 3.11
2659 3103 2.084546 CATCCCTTCGTCCAACCTTTC 58.915 52.381 0.00 0.00 0.00 2.62
2660 3104 1.133363 TCCCTTCGTCCAACCTTTCA 58.867 50.000 0.00 0.00 0.00 2.69
2661 3105 1.702957 TCCCTTCGTCCAACCTTTCAT 59.297 47.619 0.00 0.00 0.00 2.57
2662 3106 1.812571 CCCTTCGTCCAACCTTTCATG 59.187 52.381 0.00 0.00 0.00 3.07
2663 3107 2.504367 CCTTCGTCCAACCTTTCATGT 58.496 47.619 0.00 0.00 0.00 3.21
2664 3108 3.558321 CCCTTCGTCCAACCTTTCATGTA 60.558 47.826 0.00 0.00 0.00 2.29
2665 3109 4.261801 CCTTCGTCCAACCTTTCATGTAT 58.738 43.478 0.00 0.00 0.00 2.29
2666 3110 5.424757 CCTTCGTCCAACCTTTCATGTATA 58.575 41.667 0.00 0.00 0.00 1.47
2667 3111 6.055588 CCTTCGTCCAACCTTTCATGTATAT 58.944 40.000 0.00 0.00 0.00 0.86
2668 3112 6.202954 CCTTCGTCCAACCTTTCATGTATATC 59.797 42.308 0.00 0.00 0.00 1.63
2669 3113 6.228616 TCGTCCAACCTTTCATGTATATCA 57.771 37.500 0.00 0.00 0.00 2.15
2670 3114 6.826668 TCGTCCAACCTTTCATGTATATCAT 58.173 36.000 0.00 0.00 37.22 2.45
2671 3115 7.958088 TCGTCCAACCTTTCATGTATATCATA 58.042 34.615 0.00 0.00 34.67 2.15
2672 3116 8.425703 TCGTCCAACCTTTCATGTATATCATAA 58.574 33.333 0.00 0.00 34.67 1.90
2673 3117 9.219603 CGTCCAACCTTTCATGTATATCATAAT 57.780 33.333 0.00 0.00 34.67 1.28
2705 3149 9.762381 ACCATAATTTATTTACCTTCTGAACCA 57.238 29.630 0.00 0.00 0.00 3.67
2711 3155 8.713708 TTTATTTACCTTCTGAACCAATTCCA 57.286 30.769 0.00 0.00 33.49 3.53
2712 3156 6.590234 ATTTACCTTCTGAACCAATTCCAC 57.410 37.500 0.00 0.00 33.49 4.02
2713 3157 3.884037 ACCTTCTGAACCAATTCCACT 57.116 42.857 0.00 0.00 33.49 4.00
2714 3158 4.184649 ACCTTCTGAACCAATTCCACTT 57.815 40.909 0.00 0.00 33.49 3.16
2715 3159 4.546674 ACCTTCTGAACCAATTCCACTTT 58.453 39.130 0.00 0.00 33.49 2.66
2716 3160 5.701224 ACCTTCTGAACCAATTCCACTTTA 58.299 37.500 0.00 0.00 33.49 1.85
2717 3161 6.133356 ACCTTCTGAACCAATTCCACTTTAA 58.867 36.000 0.00 0.00 33.49 1.52
2718 3162 6.782494 ACCTTCTGAACCAATTCCACTTTAAT 59.218 34.615 0.00 0.00 33.49 1.40
2719 3163 7.290014 ACCTTCTGAACCAATTCCACTTTAATT 59.710 33.333 0.00 0.00 33.49 1.40
2720 3164 8.150296 CCTTCTGAACCAATTCCACTTTAATTT 58.850 33.333 0.00 0.00 33.49 1.82
2722 3166 9.974980 TTCTGAACCAATTCCACTTTAATTTAC 57.025 29.630 0.00 0.00 33.49 2.01
2723 3167 9.362151 TCTGAACCAATTCCACTTTAATTTACT 57.638 29.630 0.00 0.00 33.49 2.24
2724 3168 9.981114 CTGAACCAATTCCACTTTAATTTACTT 57.019 29.630 0.00 0.00 33.49 2.24
2728 3172 9.369672 ACCAATTCCACTTTAATTTACTTACCA 57.630 29.630 0.00 0.00 0.00 3.25
2771 3215 9.739276 ATAAGGTAATTCACAGACAGAATTTGA 57.261 29.630 6.48 0.00 41.54 2.69
2772 3216 8.641498 AAGGTAATTCACAGACAGAATTTGAT 57.359 30.769 6.48 0.00 41.54 2.57
2773 3217 8.048534 AGGTAATTCACAGACAGAATTTGATG 57.951 34.615 6.48 0.00 41.54 3.07
2774 3218 7.884877 AGGTAATTCACAGACAGAATTTGATGA 59.115 33.333 6.48 0.00 41.54 2.92
2775 3219 8.514594 GGTAATTCACAGACAGAATTTGATGAA 58.485 33.333 6.48 0.00 41.54 2.57
2776 3220 9.334693 GTAATTCACAGACAGAATTTGATGAAC 57.665 33.333 6.48 0.00 41.54 3.18
2777 3221 6.940831 TTCACAGACAGAATTTGATGAACA 57.059 33.333 0.00 0.00 0.00 3.18
2778 3222 7.514784 TTCACAGACAGAATTTGATGAACAT 57.485 32.000 0.00 0.00 0.00 2.71
2779 3223 7.514784 TCACAGACAGAATTTGATGAACATT 57.485 32.000 0.00 0.00 0.00 2.71
2780 3224 7.944061 TCACAGACAGAATTTGATGAACATTT 58.056 30.769 0.00 0.00 0.00 2.32
2781 3225 9.065798 TCACAGACAGAATTTGATGAACATTTA 57.934 29.630 0.00 0.00 0.00 1.40
2782 3226 9.121517 CACAGACAGAATTTGATGAACATTTAC 57.878 33.333 0.00 0.00 0.00 2.01
2783 3227 9.071276 ACAGACAGAATTTGATGAACATTTACT 57.929 29.630 0.00 0.00 0.00 2.24
2784 3228 9.903682 CAGACAGAATTTGATGAACATTTACTT 57.096 29.630 0.00 0.00 0.00 2.24
2793 3237 9.605955 TTTGATGAACATTTACTTACACAATCG 57.394 29.630 0.00 0.00 0.00 3.34
2794 3238 7.240674 TGATGAACATTTACTTACACAATCGC 58.759 34.615 0.00 0.00 0.00 4.58
2795 3239 6.546972 TGAACATTTACTTACACAATCGCA 57.453 33.333 0.00 0.00 0.00 5.10
2796 3240 7.139896 TGAACATTTACTTACACAATCGCAT 57.860 32.000 0.00 0.00 0.00 4.73
2797 3241 7.589395 TGAACATTTACTTACACAATCGCATT 58.411 30.769 0.00 0.00 0.00 3.56
2798 3242 8.722394 TGAACATTTACTTACACAATCGCATTA 58.278 29.630 0.00 0.00 0.00 1.90
2799 3243 9.549509 GAACATTTACTTACACAATCGCATTAA 57.450 29.630 0.00 0.00 0.00 1.40
2807 3251 8.888716 ACTTACACAATCGCATTAATATTGACA 58.111 29.630 13.81 0.13 35.18 3.58
2808 3252 9.373750 CTTACACAATCGCATTAATATTGACAG 57.626 33.333 13.81 7.56 35.18 3.51
2809 3253 6.728200 ACACAATCGCATTAATATTGACAGG 58.272 36.000 13.81 5.59 35.18 4.00
2810 3254 6.318648 ACACAATCGCATTAATATTGACAGGT 59.681 34.615 13.81 6.03 35.18 4.00
2811 3255 7.497579 ACACAATCGCATTAATATTGACAGGTA 59.502 33.333 13.81 0.00 35.18 3.08
2812 3256 8.341903 CACAATCGCATTAATATTGACAGGTAA 58.658 33.333 13.81 0.00 35.18 2.85
2813 3257 8.898761 ACAATCGCATTAATATTGACAGGTAAA 58.101 29.630 13.81 0.00 35.18 2.01
2814 3258 9.897744 CAATCGCATTAATATTGACAGGTAAAT 57.102 29.630 0.00 0.00 33.38 1.40
2816 3260 8.669946 TCGCATTAATATTGACAGGTAAATCA 57.330 30.769 0.00 0.00 0.00 2.57
2817 3261 8.556194 TCGCATTAATATTGACAGGTAAATCAC 58.444 33.333 0.00 0.00 0.00 3.06
2818 3262 8.341903 CGCATTAATATTGACAGGTAAATCACA 58.658 33.333 0.00 0.00 0.00 3.58
2826 3270 6.533819 TGACAGGTAAATCACAAACTAACG 57.466 37.500 0.00 0.00 0.00 3.18
2827 3271 6.050432 TGACAGGTAAATCACAAACTAACGT 58.950 36.000 0.00 0.00 0.00 3.99
2828 3272 7.208777 TGACAGGTAAATCACAAACTAACGTA 58.791 34.615 0.00 0.00 0.00 3.57
2829 3273 7.874016 TGACAGGTAAATCACAAACTAACGTAT 59.126 33.333 0.00 0.00 0.00 3.06
2830 3274 8.611654 ACAGGTAAATCACAAACTAACGTATT 57.388 30.769 0.00 0.00 0.00 1.89
2831 3275 9.709495 ACAGGTAAATCACAAACTAACGTATTA 57.291 29.630 0.00 0.00 0.00 0.98
2864 3308 4.341502 GTTGCAACGCACGGGCAT 62.342 61.111 14.90 0.00 38.71 4.40
2865 3309 4.340019 TTGCAACGCACGGGCATG 62.340 61.111 11.77 9.58 38.71 4.06
2872 3316 4.517815 GCACGGGCATGGGCATTG 62.518 66.667 3.77 0.00 43.71 2.82
2873 3317 3.069946 CACGGGCATGGGCATTGT 61.070 61.111 0.00 0.00 43.71 2.71
2874 3318 2.283821 ACGGGCATGGGCATTGTT 60.284 55.556 0.00 0.00 43.71 2.83
2875 3319 2.350458 ACGGGCATGGGCATTGTTC 61.350 57.895 0.00 0.00 43.71 3.18
2876 3320 2.053865 CGGGCATGGGCATTGTTCT 61.054 57.895 0.00 0.00 43.71 3.01
2877 3321 0.751277 CGGGCATGGGCATTGTTCTA 60.751 55.000 0.00 0.00 43.71 2.10
2878 3322 1.035139 GGGCATGGGCATTGTTCTAG 58.965 55.000 0.00 0.00 43.71 2.43
2879 3323 1.686115 GGGCATGGGCATTGTTCTAGT 60.686 52.381 0.00 0.00 43.71 2.57
2880 3324 1.678101 GGCATGGGCATTGTTCTAGTC 59.322 52.381 0.00 0.00 43.71 2.59
2889 3333 6.491745 TGGGCATTGTTCTAGTCAAATTGTAA 59.508 34.615 7.06 0.00 0.00 2.41
2909 3353 7.982761 TGTAAATTCAGTTAACATTACCGGT 57.017 32.000 13.98 13.98 0.00 5.28
3005 3520 3.662759 TCTCCTCAACAAAAACAGGGT 57.337 42.857 0.00 0.00 0.00 4.34
3009 3524 2.362077 CCTCAACAAAAACAGGGTCCAG 59.638 50.000 0.00 0.00 0.00 3.86
3011 3526 2.107366 CAACAAAAACAGGGTCCAGGT 58.893 47.619 0.00 0.00 0.00 4.00
3041 3556 1.272807 GGTACTGTGGCAGGGAAGTA 58.727 55.000 0.00 0.00 35.51 2.24
3045 3560 2.180276 ACTGTGGCAGGGAAGTAGTAG 58.820 52.381 0.00 0.00 35.51 2.57
3055 3570 5.828859 GCAGGGAAGTAGTAGAAGTAGATCA 59.171 44.000 0.00 0.00 0.00 2.92
3064 3579 1.834263 AGAAGTAGATCACACCAGGGC 59.166 52.381 0.00 0.00 0.00 5.19
3085 3600 1.229428 CATCTGGACACACACACACC 58.771 55.000 0.00 0.00 0.00 4.16
3086 3601 1.131638 ATCTGGACACACACACACCT 58.868 50.000 0.00 0.00 0.00 4.00
3087 3602 0.177836 TCTGGACACACACACACCTG 59.822 55.000 0.00 0.00 0.00 4.00
3088 3603 0.815213 CTGGACACACACACACCTGG 60.815 60.000 0.00 0.00 0.00 4.45
3089 3604 1.525995 GGACACACACACACCTGGG 60.526 63.158 0.00 0.00 0.00 4.45
3090 3605 1.223487 GACACACACACACCTGGGT 59.777 57.895 0.00 0.00 32.51 4.51
3099 3614 3.991999 CACCTGGGTGTGCATCTG 58.008 61.111 11.29 0.00 40.91 2.90
3100 3615 1.376086 CACCTGGGTGTGCATCTGA 59.624 57.895 11.29 0.00 40.91 3.27
3101 3616 0.675837 CACCTGGGTGTGCATCTGAG 60.676 60.000 11.29 0.00 40.91 3.35
3102 3617 1.748122 CCTGGGTGTGCATCTGAGC 60.748 63.158 0.00 0.00 0.00 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.668353 ACTAATATGAAGTACGACGACAAGTTA 58.332 33.333 0.00 0.00 0.00 2.24
1 2 7.533426 ACTAATATGAAGTACGACGACAAGTT 58.467 34.615 0.00 0.00 0.00 2.66
2 3 7.081526 ACTAATATGAAGTACGACGACAAGT 57.918 36.000 0.00 0.00 0.00 3.16
32 33 6.687081 TTTGTCGTTGTCTTAATTCAACCT 57.313 33.333 13.51 0.00 40.22 3.50
33 34 7.486870 AGTTTTTGTCGTTGTCTTAATTCAACC 59.513 33.333 13.51 5.44 40.22 3.77
76 77 8.786898 AGCGACTACTAATCGTTTGGTAATATA 58.213 33.333 4.33 0.00 41.68 0.86
119 120 5.648526 ACGTGCTAGAGAGATAGAGTTTTGA 59.351 40.000 0.00 0.00 0.00 2.69
137 146 1.082117 GTATGCGGCAAGTACGTGCT 61.082 55.000 28.62 14.56 44.31 4.40
232 241 2.406616 GCCCATCGCCGTGTTCAAT 61.407 57.895 0.00 0.00 0.00 2.57
452 504 2.736144 TCGCGTACCTTTCATTGTCT 57.264 45.000 5.77 0.00 0.00 3.41
613 673 3.426159 CGTGTTGATGACTTTACATGGCC 60.426 47.826 0.00 0.00 0.00 5.36
625 693 2.606108 CATCGTCTTCCGTGTTGATGA 58.394 47.619 0.00 0.00 36.25 2.92
706 776 5.076106 CGTTTTGTTTTTGCATTCGTGTTT 58.924 33.333 0.00 0.00 0.00 2.83
707 777 4.386049 TCGTTTTGTTTTTGCATTCGTGTT 59.614 33.333 0.00 0.00 0.00 3.32
708 778 3.921021 TCGTTTTGTTTTTGCATTCGTGT 59.079 34.783 0.00 0.00 0.00 4.49
709 779 4.264145 TCTCGTTTTGTTTTTGCATTCGTG 59.736 37.500 0.00 0.00 0.00 4.35
710 780 4.416620 TCTCGTTTTGTTTTTGCATTCGT 58.583 34.783 0.00 0.00 0.00 3.85
711 781 4.732923 TCTCTCGTTTTGTTTTTGCATTCG 59.267 37.500 0.00 0.00 0.00 3.34
712 782 5.514914 TGTCTCTCGTTTTGTTTTTGCATTC 59.485 36.000 0.00 0.00 0.00 2.67
764 1087 1.982073 GAGGTTGCTACGCATGCCAC 61.982 60.000 13.15 0.00 38.76 5.01
772 1095 1.810030 GGCCGAAGAGGTTGCTACG 60.810 63.158 0.00 0.00 43.70 3.51
833 1166 4.614535 GCTGTGATGCTCGAGTGAATTTTT 60.615 41.667 15.13 0.00 0.00 1.94
840 1173 0.457443 TAGGCTGTGATGCTCGAGTG 59.543 55.000 15.13 0.00 0.00 3.51
844 1180 0.670706 TAGCTAGGCTGTGATGCTCG 59.329 55.000 0.00 0.00 40.10 5.03
902 1238 2.345124 AGCTTGCTCATCATTCCTCC 57.655 50.000 0.00 0.00 0.00 4.30
903 1239 4.002316 GGATAGCTTGCTCATCATTCCTC 58.998 47.826 0.00 0.00 0.00 3.71
904 1240 3.244840 GGGATAGCTTGCTCATCATTCCT 60.245 47.826 0.00 0.00 0.00 3.36
905 1241 3.080319 GGGATAGCTTGCTCATCATTCC 58.920 50.000 0.00 0.00 0.00 3.01
906 1242 3.080319 GGGGATAGCTTGCTCATCATTC 58.920 50.000 0.00 0.00 0.00 2.67
957 1293 6.846505 AGAGGTGATGGGATAGTTAATTGAGA 59.153 38.462 0.00 0.00 0.00 3.27
1038 1374 3.932710 AGTGTGCTGTTGGTATATTGTCG 59.067 43.478 0.00 0.00 0.00 4.35
1126 1480 1.021968 CGGGGTGTATAAAGCTTGGC 58.978 55.000 0.00 0.00 0.00 4.52
1639 2011 1.461127 GCTGCTTTGTTCTCCACGTAG 59.539 52.381 0.00 0.00 0.00 3.51
2202 2579 8.246430 ACTAAGCACTAATAATAGTAGCACCA 57.754 34.615 12.10 1.10 40.44 4.17
2203 2580 9.623350 GTACTAAGCACTAATAATAGTAGCACC 57.377 37.037 12.10 0.00 40.44 5.01
2204 2581 9.327529 CGTACTAAGCACTAATAATAGTAGCAC 57.672 37.037 12.10 0.00 40.44 4.40
2205 2582 9.060347 ACGTACTAAGCACTAATAATAGTAGCA 57.940 33.333 12.10 0.00 40.44 3.49
2211 2588 9.333497 CGCAATACGTACTAAGCACTAATAATA 57.667 33.333 0.00 0.00 36.87 0.98
2212 2589 8.077991 TCGCAATACGTACTAAGCACTAATAAT 58.922 33.333 0.00 0.00 44.19 1.28
2213 2590 7.416817 TCGCAATACGTACTAAGCACTAATAA 58.583 34.615 0.00 0.00 44.19 1.40
2214 2591 6.958255 TCGCAATACGTACTAAGCACTAATA 58.042 36.000 0.00 0.00 44.19 0.98
2215 2592 5.824429 TCGCAATACGTACTAAGCACTAAT 58.176 37.500 0.00 0.00 44.19 1.73
2216 2593 5.233957 TCGCAATACGTACTAAGCACTAA 57.766 39.130 0.00 0.00 44.19 2.24
2229 2624 1.201921 GCACAAACTCCTCGCAATACG 60.202 52.381 0.00 0.00 45.62 3.06
2318 2720 9.961265 GTAATTAGCAAACCCTACCAATTATTC 57.039 33.333 0.00 0.00 0.00 1.75
2345 2747 6.038050 ACGTACATAGCTTAGTTACTCACTCC 59.962 42.308 0.00 0.00 36.88 3.85
2372 2774 3.056749 ACACTCGGACTTTGACATACTCC 60.057 47.826 0.00 0.00 0.00 3.85
2374 2776 4.765856 ACTACACTCGGACTTTGACATACT 59.234 41.667 0.00 0.00 0.00 2.12
2401 2805 5.470098 AGTTACAAGGCTTCATACAACACTG 59.530 40.000 0.00 0.00 0.00 3.66
2402 2806 5.621193 AGTTACAAGGCTTCATACAACACT 58.379 37.500 0.00 0.00 0.00 3.55
2408 2812 5.629079 AGCAAAGTTACAAGGCTTCATAC 57.371 39.130 0.00 0.00 0.00 2.39
2431 2836 5.474578 AAGCTAGAACAGTCTCATTCACA 57.525 39.130 0.00 0.00 35.12 3.58
2432 2837 6.390721 TGTAAGCTAGAACAGTCTCATTCAC 58.609 40.000 0.00 0.00 35.12 3.18
2488 2932 5.921408 GCGTTCGATCTTAATCTAATGGTCT 59.079 40.000 0.00 0.00 28.90 3.85
2610 3054 9.020731 GGGAAGAAAGGTGAAATGATAACTTTA 57.979 33.333 0.00 0.00 0.00 1.85
2611 3055 7.508977 TGGGAAGAAAGGTGAAATGATAACTTT 59.491 33.333 0.00 0.00 0.00 2.66
2612 3056 7.010160 TGGGAAGAAAGGTGAAATGATAACTT 58.990 34.615 0.00 0.00 0.00 2.66
2613 3057 6.434340 GTGGGAAGAAAGGTGAAATGATAACT 59.566 38.462 0.00 0.00 0.00 2.24
2614 3058 6.350194 GGTGGGAAGAAAGGTGAAATGATAAC 60.350 42.308 0.00 0.00 0.00 1.89
2615 3059 5.714806 GGTGGGAAGAAAGGTGAAATGATAA 59.285 40.000 0.00 0.00 0.00 1.75
2616 3060 5.222233 TGGTGGGAAGAAAGGTGAAATGATA 60.222 40.000 0.00 0.00 0.00 2.15
2617 3061 4.089361 GGTGGGAAGAAAGGTGAAATGAT 58.911 43.478 0.00 0.00 0.00 2.45
2618 3062 3.117322 TGGTGGGAAGAAAGGTGAAATGA 60.117 43.478 0.00 0.00 0.00 2.57
2619 3063 3.230134 TGGTGGGAAGAAAGGTGAAATG 58.770 45.455 0.00 0.00 0.00 2.32
2620 3064 3.611025 TGGTGGGAAGAAAGGTGAAAT 57.389 42.857 0.00 0.00 0.00 2.17
2621 3065 3.496331 GATGGTGGGAAGAAAGGTGAAA 58.504 45.455 0.00 0.00 0.00 2.69
2622 3066 2.225017 GGATGGTGGGAAGAAAGGTGAA 60.225 50.000 0.00 0.00 0.00 3.18
2623 3067 1.354368 GGATGGTGGGAAGAAAGGTGA 59.646 52.381 0.00 0.00 0.00 4.02
2624 3068 1.616994 GGGATGGTGGGAAGAAAGGTG 60.617 57.143 0.00 0.00 0.00 4.00
2625 3069 0.704664 GGGATGGTGGGAAGAAAGGT 59.295 55.000 0.00 0.00 0.00 3.50
2626 3070 1.002857 AGGGATGGTGGGAAGAAAGG 58.997 55.000 0.00 0.00 0.00 3.11
2627 3071 2.728007 GAAGGGATGGTGGGAAGAAAG 58.272 52.381 0.00 0.00 0.00 2.62
2628 3072 1.004277 CGAAGGGATGGTGGGAAGAAA 59.996 52.381 0.00 0.00 0.00 2.52
2629 3073 0.618458 CGAAGGGATGGTGGGAAGAA 59.382 55.000 0.00 0.00 0.00 2.52
2630 3074 0.546747 ACGAAGGGATGGTGGGAAGA 60.547 55.000 0.00 0.00 0.00 2.87
2631 3075 0.107654 GACGAAGGGATGGTGGGAAG 60.108 60.000 0.00 0.00 0.00 3.46
2632 3076 1.559065 GGACGAAGGGATGGTGGGAA 61.559 60.000 0.00 0.00 0.00 3.97
2633 3077 1.993391 GGACGAAGGGATGGTGGGA 60.993 63.158 0.00 0.00 0.00 4.37
2634 3078 1.847798 TTGGACGAAGGGATGGTGGG 61.848 60.000 0.00 0.00 0.00 4.61
2635 3079 0.676782 GTTGGACGAAGGGATGGTGG 60.677 60.000 0.00 0.00 0.00 4.61
2636 3080 0.676782 GGTTGGACGAAGGGATGGTG 60.677 60.000 0.00 0.00 0.00 4.17
2637 3081 0.840722 AGGTTGGACGAAGGGATGGT 60.841 55.000 0.00 0.00 0.00 3.55
2638 3082 0.328258 AAGGTTGGACGAAGGGATGG 59.672 55.000 0.00 0.00 0.00 3.51
2639 3083 2.084546 GAAAGGTTGGACGAAGGGATG 58.915 52.381 0.00 0.00 0.00 3.51
2640 3084 1.702957 TGAAAGGTTGGACGAAGGGAT 59.297 47.619 0.00 0.00 0.00 3.85
2641 3085 1.133363 TGAAAGGTTGGACGAAGGGA 58.867 50.000 0.00 0.00 0.00 4.20
2642 3086 1.812571 CATGAAAGGTTGGACGAAGGG 59.187 52.381 0.00 0.00 0.00 3.95
2643 3087 2.504367 ACATGAAAGGTTGGACGAAGG 58.496 47.619 0.00 0.00 0.00 3.46
2644 3088 6.761242 TGATATACATGAAAGGTTGGACGAAG 59.239 38.462 0.00 0.00 28.09 3.79
2645 3089 6.645306 TGATATACATGAAAGGTTGGACGAA 58.355 36.000 0.00 0.00 28.09 3.85
2646 3090 6.228616 TGATATACATGAAAGGTTGGACGA 57.771 37.500 0.00 0.00 28.09 4.20
2647 3091 8.601845 TTATGATATACATGAAAGGTTGGACG 57.398 34.615 0.00 0.00 39.77 4.79
2679 3123 9.762381 TGGTTCAGAAGGTAAATAAATTATGGT 57.238 29.630 0.00 0.00 0.00 3.55
2685 3129 9.320295 TGGAATTGGTTCAGAAGGTAAATAAAT 57.680 29.630 0.00 0.00 36.01 1.40
2686 3130 8.581578 GTGGAATTGGTTCAGAAGGTAAATAAA 58.418 33.333 0.00 0.00 36.01 1.40
2687 3131 7.947890 AGTGGAATTGGTTCAGAAGGTAAATAA 59.052 33.333 0.00 0.00 36.01 1.40
2688 3132 7.466804 AGTGGAATTGGTTCAGAAGGTAAATA 58.533 34.615 0.00 0.00 36.01 1.40
2689 3133 6.314917 AGTGGAATTGGTTCAGAAGGTAAAT 58.685 36.000 0.00 0.00 36.01 1.40
2690 3134 5.701224 AGTGGAATTGGTTCAGAAGGTAAA 58.299 37.500 0.00 0.00 36.01 2.01
2691 3135 5.319043 AGTGGAATTGGTTCAGAAGGTAA 57.681 39.130 0.00 0.00 36.01 2.85
2692 3136 4.993705 AGTGGAATTGGTTCAGAAGGTA 57.006 40.909 0.00 0.00 36.01 3.08
2693 3137 3.884037 AGTGGAATTGGTTCAGAAGGT 57.116 42.857 0.00 0.00 36.01 3.50
2694 3138 6.648879 TTAAAGTGGAATTGGTTCAGAAGG 57.351 37.500 0.00 0.00 36.01 3.46
2696 3140 9.974980 GTAAATTAAAGTGGAATTGGTTCAGAA 57.025 29.630 0.00 0.00 36.01 3.02
2697 3141 9.362151 AGTAAATTAAAGTGGAATTGGTTCAGA 57.638 29.630 0.00 0.00 36.01 3.27
2698 3142 9.981114 AAGTAAATTAAAGTGGAATTGGTTCAG 57.019 29.630 0.00 0.00 36.01 3.02
2702 3146 9.369672 TGGTAAGTAAATTAAAGTGGAATTGGT 57.630 29.630 0.00 0.00 0.00 3.67
2745 3189 9.739276 TCAAATTCTGTCTGTGAATTACCTTAT 57.261 29.630 0.00 0.00 41.54 1.73
2746 3190 9.739276 ATCAAATTCTGTCTGTGAATTACCTTA 57.261 29.630 0.00 0.00 41.54 2.69
2747 3191 8.517878 CATCAAATTCTGTCTGTGAATTACCTT 58.482 33.333 0.00 0.00 41.54 3.50
2748 3192 7.884877 TCATCAAATTCTGTCTGTGAATTACCT 59.115 33.333 0.00 0.00 41.54 3.08
2749 3193 8.044060 TCATCAAATTCTGTCTGTGAATTACC 57.956 34.615 0.00 0.00 41.54 2.85
2750 3194 9.334693 GTTCATCAAATTCTGTCTGTGAATTAC 57.665 33.333 0.00 0.00 41.54 1.89
2751 3195 9.065798 TGTTCATCAAATTCTGTCTGTGAATTA 57.934 29.630 0.00 0.00 41.54 1.40
2752 3196 7.944061 TGTTCATCAAATTCTGTCTGTGAATT 58.056 30.769 0.00 0.00 43.44 2.17
2753 3197 7.514784 TGTTCATCAAATTCTGTCTGTGAAT 57.485 32.000 0.00 0.00 35.88 2.57
2754 3198 6.940831 TGTTCATCAAATTCTGTCTGTGAA 57.059 33.333 0.00 0.00 0.00 3.18
2755 3199 7.514784 AATGTTCATCAAATTCTGTCTGTGA 57.485 32.000 0.00 0.00 0.00 3.58
2756 3200 9.121517 GTAAATGTTCATCAAATTCTGTCTGTG 57.878 33.333 0.00 0.00 0.00 3.66
2757 3201 9.071276 AGTAAATGTTCATCAAATTCTGTCTGT 57.929 29.630 0.00 0.00 0.00 3.41
2758 3202 9.903682 AAGTAAATGTTCATCAAATTCTGTCTG 57.096 29.630 0.00 0.00 0.00 3.51
2767 3211 9.605955 CGATTGTGTAAGTAAATGTTCATCAAA 57.394 29.630 0.00 0.00 0.00 2.69
2768 3212 7.748683 GCGATTGTGTAAGTAAATGTTCATCAA 59.251 33.333 0.00 0.00 0.00 2.57
2769 3213 7.095017 TGCGATTGTGTAAGTAAATGTTCATCA 60.095 33.333 0.00 0.00 0.00 3.07
2770 3214 7.240674 TGCGATTGTGTAAGTAAATGTTCATC 58.759 34.615 0.00 0.00 0.00 2.92
2771 3215 7.139896 TGCGATTGTGTAAGTAAATGTTCAT 57.860 32.000 0.00 0.00 0.00 2.57
2772 3216 6.546972 TGCGATTGTGTAAGTAAATGTTCA 57.453 33.333 0.00 0.00 0.00 3.18
2773 3217 9.549509 TTAATGCGATTGTGTAAGTAAATGTTC 57.450 29.630 0.00 0.00 0.00 3.18
2781 3225 8.888716 TGTCAATATTAATGCGATTGTGTAAGT 58.111 29.630 0.00 0.00 33.27 2.24
2782 3226 9.373750 CTGTCAATATTAATGCGATTGTGTAAG 57.626 33.333 0.00 0.00 33.27 2.34
2783 3227 8.341903 CCTGTCAATATTAATGCGATTGTGTAA 58.658 33.333 0.00 0.00 33.27 2.41
2784 3228 7.497579 ACCTGTCAATATTAATGCGATTGTGTA 59.502 33.333 0.00 0.00 33.27 2.90
2785 3229 6.318648 ACCTGTCAATATTAATGCGATTGTGT 59.681 34.615 0.00 0.00 33.27 3.72
2786 3230 6.728200 ACCTGTCAATATTAATGCGATTGTG 58.272 36.000 0.00 0.00 33.27 3.33
2787 3231 6.942532 ACCTGTCAATATTAATGCGATTGT 57.057 33.333 0.00 0.00 33.27 2.71
2788 3232 9.897744 ATTTACCTGTCAATATTAATGCGATTG 57.102 29.630 0.00 0.84 32.85 2.67
2790 3234 9.283768 TGATTTACCTGTCAATATTAATGCGAT 57.716 29.630 0.00 0.00 0.00 4.58
2791 3235 8.556194 GTGATTTACCTGTCAATATTAATGCGA 58.444 33.333 0.00 0.00 0.00 5.10
2792 3236 8.341903 TGTGATTTACCTGTCAATATTAATGCG 58.658 33.333 0.00 0.00 0.00 4.73
2800 3244 8.714179 CGTTAGTTTGTGATTTACCTGTCAATA 58.286 33.333 0.00 0.00 0.00 1.90
2801 3245 7.227910 ACGTTAGTTTGTGATTTACCTGTCAAT 59.772 33.333 0.00 0.00 0.00 2.57
2802 3246 6.539464 ACGTTAGTTTGTGATTTACCTGTCAA 59.461 34.615 0.00 0.00 0.00 3.18
2803 3247 6.050432 ACGTTAGTTTGTGATTTACCTGTCA 58.950 36.000 0.00 0.00 0.00 3.58
2804 3248 6.535274 ACGTTAGTTTGTGATTTACCTGTC 57.465 37.500 0.00 0.00 0.00 3.51
2805 3249 8.611654 AATACGTTAGTTTGTGATTTACCTGT 57.388 30.769 0.00 0.00 0.00 4.00
2847 3291 4.341502 ATGCCCGTGCGTTGCAAC 62.342 61.111 19.89 19.89 41.47 4.17
2848 3292 4.340019 CATGCCCGTGCGTTGCAA 62.340 61.111 0.00 0.00 41.47 4.08
2855 3299 4.517815 CAATGCCCATGCCCGTGC 62.518 66.667 0.00 0.00 36.33 5.34
2856 3300 2.561549 GAACAATGCCCATGCCCGTG 62.562 60.000 0.00 0.00 36.33 4.94
2857 3301 2.283821 AACAATGCCCATGCCCGT 60.284 55.556 0.00 0.00 36.33 5.28
2858 3302 0.751277 TAGAACAATGCCCATGCCCG 60.751 55.000 0.00 0.00 36.33 6.13
2859 3303 1.035139 CTAGAACAATGCCCATGCCC 58.965 55.000 0.00 0.00 36.33 5.36
2860 3304 1.678101 GACTAGAACAATGCCCATGCC 59.322 52.381 0.00 0.00 36.33 4.40
2861 3305 2.368439 TGACTAGAACAATGCCCATGC 58.632 47.619 0.00 0.00 38.26 4.06
2862 3306 5.587388 ATTTGACTAGAACAATGCCCATG 57.413 39.130 0.00 0.00 0.00 3.66
2863 3307 5.481473 ACAATTTGACTAGAACAATGCCCAT 59.519 36.000 2.79 0.00 0.00 4.00
2864 3308 4.832266 ACAATTTGACTAGAACAATGCCCA 59.168 37.500 2.79 0.00 0.00 5.36
2865 3309 5.391312 ACAATTTGACTAGAACAATGCCC 57.609 39.130 2.79 0.00 0.00 5.36
2866 3310 8.986477 ATTTACAATTTGACTAGAACAATGCC 57.014 30.769 2.79 0.00 0.00 4.40
2889 3333 7.110155 AGATGACCGGTAATGTTAACTGAATT 58.890 34.615 9.95 1.23 0.00 2.17
2900 3344 4.503910 TGTTTCAGAGATGACCGGTAATG 58.496 43.478 9.95 0.00 0.00 1.90
2909 3353 4.313282 CAGTGCTTCTGTTTCAGAGATGA 58.687 43.478 0.00 0.00 41.75 2.92
2982 3497 5.701224 ACCCTGTTTTTGTTGAGGAGATAA 58.299 37.500 0.00 0.00 0.00 1.75
2989 3504 2.362077 CCTGGACCCTGTTTTTGTTGAG 59.638 50.000 0.00 0.00 0.00 3.02
2990 3505 2.291930 ACCTGGACCCTGTTTTTGTTGA 60.292 45.455 0.00 0.00 0.00 3.18
2991 3506 2.107366 ACCTGGACCCTGTTTTTGTTG 58.893 47.619 0.00 0.00 0.00 3.33
3041 3556 4.282496 CCCTGGTGTGATCTACTTCTACT 58.718 47.826 0.00 0.00 0.00 2.57
3045 3560 1.471676 CGCCCTGGTGTGATCTACTTC 60.472 57.143 0.00 0.00 0.00 3.01
3055 3570 4.415150 CCAGATGCGCCCTGGTGT 62.415 66.667 27.95 0.00 44.66 4.16
3064 3579 0.879839 TGTGTGTGTGTCCAGATGCG 60.880 55.000 0.00 0.00 0.00 4.73
3085 3600 3.900855 GCTCAGATGCACACCCAG 58.099 61.111 0.00 0.00 0.00 4.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.