Multiple sequence alignment - TraesCS4D01G114000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G114000 chr4D 100.000 2177 0 0 1 2177 94786230 94788406 0.000000e+00 4021
1 TraesCS4D01G114000 chr4D 93.065 721 44 4 1 720 295743986 295744701 0.000000e+00 1050
2 TraesCS4D01G114000 chr4D 88.049 410 36 5 1769 2177 450477435 450477038 7.030000e-130 473
3 TraesCS4D01G114000 chr6D 96.528 1037 36 0 734 1770 389254190 389253154 0.000000e+00 1716
4 TraesCS4D01G114000 chr6D 96.336 1037 38 0 734 1770 389249395 389248359 0.000000e+00 1705
5 TraesCS4D01G114000 chr6D 92.926 721 46 5 1 720 243054889 243055605 0.000000e+00 1044
6 TraesCS4D01G114000 chr6D 92.562 726 52 2 1 726 208297313 208296590 0.000000e+00 1040
7 TraesCS4D01G114000 chr6D 92.639 720 52 1 1 720 144188509 144189227 0.000000e+00 1035
8 TraesCS4D01G114000 chr6D 88.010 417 39 9 1765 2177 112963556 112963965 1.170000e-132 483
9 TraesCS4D01G114000 chr5D 96.336 1037 38 0 734 1770 503238048 503237012 0.000000e+00 1705
10 TraesCS4D01G114000 chr5D 96.336 1037 37 1 734 1770 503242296 503241261 0.000000e+00 1703
11 TraesCS4D01G114000 chr5D 96.239 1037 39 0 734 1770 503228269 503227233 0.000000e+00 1700
12 TraesCS4D01G114000 chr5D 94.306 720 41 0 1 720 320069123 320069842 0.000000e+00 1103
13 TraesCS4D01G114000 chr5D 88.164 414 45 3 1765 2177 338758082 338757672 6.980000e-135 490
14 TraesCS4D01G114000 chr5D 87.290 417 44 7 1765 2177 514796275 514796686 3.270000e-128 468
15 TraesCS4D01G114000 chr3A 96.250 1040 38 1 731 1770 66008108 66009146 0.000000e+00 1703
16 TraesCS4D01G114000 chrUn 96.158 1041 39 1 731 1770 216509094 216510134 0.000000e+00 1700
17 TraesCS4D01G114000 chr7B 96.239 1037 39 0 734 1770 662723425 662722389 0.000000e+00 1700
18 TraesCS4D01G114000 chr3D 96.058 1040 40 1 731 1770 589266499 589267537 0.000000e+00 1692
19 TraesCS4D01G114000 chr3D 93.388 726 46 2 1 726 282782104 282781381 0.000000e+00 1074
20 TraesCS4D01G114000 chr3D 87.711 415 40 9 1765 2175 59827624 59828031 7.030000e-130 473
21 TraesCS4D01G114000 chr3D 87.229 415 44 7 1765 2177 189406606 189406199 4.230000e-127 464
22 TraesCS4D01G114000 chr7D 93.113 726 48 2 1 726 232594250 232593527 0.000000e+00 1062
23 TraesCS4D01G114000 chr2D 93.113 726 45 3 1 726 293530937 293530217 0.000000e+00 1059
24 TraesCS4D01G114000 chr2A 92.768 719 49 3 2 720 102956766 102957481 0.000000e+00 1037
25 TraesCS4D01G114000 chr1B 88.916 415 40 5 1765 2177 106392417 106392827 6.930000e-140 507
26 TraesCS4D01G114000 chr7A 87.440 414 48 3 1765 2177 371609074 371608664 7.030000e-130 473
27 TraesCS4D01G114000 chr4B 87.500 416 44 6 1765 2177 102144342 102143932 7.030000e-130 473


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G114000 chr4D 94786230 94788406 2176 False 4021.0 4021 100.000 1 2177 1 chr4D.!!$F1 2176
1 TraesCS4D01G114000 chr4D 295743986 295744701 715 False 1050.0 1050 93.065 1 720 1 chr4D.!!$F2 719
2 TraesCS4D01G114000 chr6D 389248359 389254190 5831 True 1710.5 1716 96.432 734 1770 2 chr6D.!!$R2 1036
3 TraesCS4D01G114000 chr6D 243054889 243055605 716 False 1044.0 1044 92.926 1 720 1 chr6D.!!$F3 719
4 TraesCS4D01G114000 chr6D 208296590 208297313 723 True 1040.0 1040 92.562 1 726 1 chr6D.!!$R1 725
5 TraesCS4D01G114000 chr6D 144188509 144189227 718 False 1035.0 1035 92.639 1 720 1 chr6D.!!$F2 719
6 TraesCS4D01G114000 chr5D 503237012 503242296 5284 True 1704.0 1705 96.336 734 1770 2 chr5D.!!$R3 1036
7 TraesCS4D01G114000 chr5D 503227233 503228269 1036 True 1700.0 1700 96.239 734 1770 1 chr5D.!!$R2 1036
8 TraesCS4D01G114000 chr5D 320069123 320069842 719 False 1103.0 1103 94.306 1 720 1 chr5D.!!$F1 719
9 TraesCS4D01G114000 chr3A 66008108 66009146 1038 False 1703.0 1703 96.250 731 1770 1 chr3A.!!$F1 1039
10 TraesCS4D01G114000 chrUn 216509094 216510134 1040 False 1700.0 1700 96.158 731 1770 1 chrUn.!!$F1 1039
11 TraesCS4D01G114000 chr7B 662722389 662723425 1036 True 1700.0 1700 96.239 734 1770 1 chr7B.!!$R1 1036
12 TraesCS4D01G114000 chr3D 589266499 589267537 1038 False 1692.0 1692 96.058 731 1770 1 chr3D.!!$F2 1039
13 TraesCS4D01G114000 chr3D 282781381 282782104 723 True 1074.0 1074 93.388 1 726 1 chr3D.!!$R2 725
14 TraesCS4D01G114000 chr7D 232593527 232594250 723 True 1062.0 1062 93.113 1 726 1 chr7D.!!$R1 725
15 TraesCS4D01G114000 chr2D 293530217 293530937 720 True 1059.0 1059 93.113 1 726 1 chr2D.!!$R1 725
16 TraesCS4D01G114000 chr2A 102956766 102957481 715 False 1037.0 1037 92.768 2 720 1 chr2A.!!$F1 718

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
777 784 0.036875 AAAGAGGGGAAGCAGAACCG 59.963 55.0 0.0 0.0 0.0 4.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1838 10889 0.095417 GCAGCAGTAACGCTAACAGC 59.905 55.0 0.0 0.0 41.38 4.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
81 82 6.402226 CCTGCATTTTAAGTTCCTACGAAGAC 60.402 42.308 0.00 0.00 0.00 3.01
164 165 2.041301 TATAGGTGGGCAGGCGGT 60.041 61.111 0.00 0.00 0.00 5.68
262 265 5.302059 CGGGAATCTATGTTCTTCCACTCTA 59.698 44.000 3.24 0.00 40.20 2.43
305 309 1.064946 CCTTTTGCCAACACGCGAA 59.935 52.632 15.93 0.00 0.00 4.70
411 416 4.124238 TGGCACCTACTACGCAATATTTC 58.876 43.478 0.00 0.00 0.00 2.17
416 421 6.258068 GCACCTACTACGCAATATTTCTTCTT 59.742 38.462 0.00 0.00 0.00 2.52
532 538 6.713450 ACTAAATAACTTTGATGTGTCCCGTT 59.287 34.615 0.00 0.00 0.00 4.44
617 623 4.361253 GCAGCACGAGGAGAAACA 57.639 55.556 0.00 0.00 0.00 2.83
667 673 4.022589 CAGTTCATTTGGTGTCAGATTGCT 60.023 41.667 0.00 0.00 0.00 3.91
706 712 9.095065 GTAGTACCATCATTATTGTTCGACTTT 57.905 33.333 0.00 0.00 0.00 2.66
720 726 1.069255 GACTTTCGGAAGAGGCGAAC 58.931 55.000 11.34 0.00 43.69 3.95
722 728 1.202604 ACTTTCGGAAGAGGCGAACAA 60.203 47.619 11.34 0.00 43.69 2.83
726 732 1.291877 CGGAAGAGGCGAACAACCAG 61.292 60.000 0.00 0.00 0.00 4.00
727 733 0.955919 GGAAGAGGCGAACAACCAGG 60.956 60.000 0.00 0.00 0.00 4.45
728 734 0.250338 GAAGAGGCGAACAACCAGGT 60.250 55.000 0.00 0.00 0.00 4.00
729 735 0.182775 AAGAGGCGAACAACCAGGTT 59.817 50.000 0.00 0.00 0.00 3.50
732 738 0.763035 AGGCGAACAACCAGGTTAGT 59.237 50.000 3.89 3.04 0.00 2.24
745 751 3.087031 CAGGTTAGTAGAACCCGACTCA 58.913 50.000 2.84 0.00 41.18 3.41
777 784 0.036875 AAAGAGGGGAAGCAGAACCG 59.963 55.000 0.00 0.00 0.00 4.44
778 785 1.842381 AAGAGGGGAAGCAGAACCGG 61.842 60.000 0.00 0.00 0.00 5.28
794 801 2.408565 ACCGGGTCAAGATGATATGGT 58.591 47.619 6.32 0.00 0.00 3.55
797 804 3.181455 CCGGGTCAAGATGATATGGTTCA 60.181 47.826 0.00 0.00 0.00 3.18
811 818 1.850345 TGGTTCACCCCTTCTTCTTGT 59.150 47.619 0.00 0.00 34.29 3.16
832 839 5.324409 TGTGCCAAAGATCTTACCATTTCT 58.676 37.500 8.75 0.00 0.00 2.52
967 5222 7.972832 ACACATACAAGAAAAAGGATAACGA 57.027 32.000 0.00 0.00 0.00 3.85
995 5250 6.154534 GCCCTCCCATTAACTACTTCATTTTT 59.845 38.462 0.00 0.00 0.00 1.94
1055 5310 6.937436 ACCGAGACAAAATTTAGAACTTGT 57.063 33.333 0.00 0.00 34.78 3.16
1090 5345 5.994668 CCTAATAGGCAAAGATTGACCTCTC 59.005 44.000 0.00 0.00 40.48 3.20
1146 5401 0.031857 CAACTCCGTTGCATTGCCAA 59.968 50.000 6.12 0.00 36.73 4.52
1172 5427 3.374745 CATGTTCCATATTTGAAGCGGC 58.625 45.455 0.00 0.00 0.00 6.53
1182 5437 0.973632 TTGAAGCGGCTTGACCTCTA 59.026 50.000 21.70 0.00 29.90 2.43
1231 5486 1.606531 CTGAGCCCCCTTTCTCCTG 59.393 63.158 0.00 0.00 0.00 3.86
1235 5490 2.548547 GCCCCCTTTCTCCTGGGTT 61.549 63.158 0.00 0.00 41.82 4.11
1440 5696 2.170012 TCCCCGTTCTATTGCTACCT 57.830 50.000 0.00 0.00 0.00 3.08
1441 5697 2.474112 TCCCCGTTCTATTGCTACCTT 58.526 47.619 0.00 0.00 0.00 3.50
1456 5712 3.954258 GCTACCTTGGGTCTTATGCAATT 59.046 43.478 0.00 0.00 37.09 2.32
1461 5717 4.646040 CCTTGGGTCTTATGCAATTGATCA 59.354 41.667 10.34 0.00 0.00 2.92
1548 10599 5.001232 AGCACGAAAGCCAGTTAGAAAATA 58.999 37.500 0.00 0.00 34.23 1.40
1641 10692 4.038642 CGGGATTTTTCTTGGGAAGTTTCA 59.961 41.667 0.00 0.00 32.61 2.69
1746 10797 6.462342 AGGGATAGAGGAAGAGGGAAAAATA 58.538 40.000 0.00 0.00 0.00 1.40
1789 10840 9.003658 AGATTAATATCATCCAACGAATTCACC 57.996 33.333 6.22 0.00 32.95 4.02
1790 10841 5.673337 AATATCATCCAACGAATTCACCG 57.327 39.130 6.22 0.00 0.00 4.94
1791 10842 2.753055 TCATCCAACGAATTCACCGA 57.247 45.000 6.22 0.00 0.00 4.69
1792 10843 3.260475 TCATCCAACGAATTCACCGAT 57.740 42.857 6.22 0.00 0.00 4.18
1793 10844 3.194861 TCATCCAACGAATTCACCGATC 58.805 45.455 6.22 0.00 0.00 3.69
1794 10845 2.018542 TCCAACGAATTCACCGATCC 57.981 50.000 6.22 0.00 0.00 3.36
1795 10846 1.276705 TCCAACGAATTCACCGATCCA 59.723 47.619 6.22 0.00 0.00 3.41
1796 10847 2.080693 CCAACGAATTCACCGATCCAA 58.919 47.619 6.22 0.00 0.00 3.53
1797 10848 2.682856 CCAACGAATTCACCGATCCAAT 59.317 45.455 6.22 0.00 0.00 3.16
1798 10849 3.487376 CCAACGAATTCACCGATCCAATG 60.487 47.826 6.22 0.00 0.00 2.82
1799 10850 1.670811 ACGAATTCACCGATCCAATGC 59.329 47.619 6.22 0.00 0.00 3.56
1800 10851 1.002468 CGAATTCACCGATCCAATGCC 60.002 52.381 6.22 0.00 0.00 4.40
1801 10852 2.301346 GAATTCACCGATCCAATGCCT 58.699 47.619 0.00 0.00 0.00 4.75
1802 10853 3.476552 GAATTCACCGATCCAATGCCTA 58.523 45.455 0.00 0.00 0.00 3.93
1803 10854 2.325583 TTCACCGATCCAATGCCTAC 57.674 50.000 0.00 0.00 0.00 3.18
1804 10855 0.104120 TCACCGATCCAATGCCTACG 59.896 55.000 0.00 0.00 0.00 3.51
1805 10856 0.104120 CACCGATCCAATGCCTACGA 59.896 55.000 0.00 0.00 0.00 3.43
1806 10857 0.389391 ACCGATCCAATGCCTACGAG 59.611 55.000 0.00 0.00 0.00 4.18
1807 10858 0.389391 CCGATCCAATGCCTACGAGT 59.611 55.000 0.00 0.00 0.00 4.18
1808 10859 1.202533 CCGATCCAATGCCTACGAGTT 60.203 52.381 0.00 0.00 0.00 3.01
1809 10860 2.550978 CGATCCAATGCCTACGAGTTT 58.449 47.619 0.00 0.00 0.00 2.66
1810 10861 2.936498 CGATCCAATGCCTACGAGTTTT 59.064 45.455 0.00 0.00 0.00 2.43
1811 10862 3.001330 CGATCCAATGCCTACGAGTTTTC 59.999 47.826 0.00 0.00 0.00 2.29
1812 10863 2.706890 TCCAATGCCTACGAGTTTTCC 58.293 47.619 0.00 0.00 0.00 3.13
1813 10864 2.039216 TCCAATGCCTACGAGTTTTCCA 59.961 45.455 0.00 0.00 0.00 3.53
1814 10865 2.161609 CCAATGCCTACGAGTTTTCCAC 59.838 50.000 0.00 0.00 0.00 4.02
1815 10866 2.811431 CAATGCCTACGAGTTTTCCACA 59.189 45.455 0.00 0.00 0.00 4.17
1816 10867 2.851263 TGCCTACGAGTTTTCCACAT 57.149 45.000 0.00 0.00 0.00 3.21
1817 10868 3.965379 TGCCTACGAGTTTTCCACATA 57.035 42.857 0.00 0.00 0.00 2.29
1818 10869 4.481368 TGCCTACGAGTTTTCCACATAT 57.519 40.909 0.00 0.00 0.00 1.78
1819 10870 4.839121 TGCCTACGAGTTTTCCACATATT 58.161 39.130 0.00 0.00 0.00 1.28
1820 10871 5.979993 TGCCTACGAGTTTTCCACATATTA 58.020 37.500 0.00 0.00 0.00 0.98
1821 10872 6.588204 TGCCTACGAGTTTTCCACATATTAT 58.412 36.000 0.00 0.00 0.00 1.28
1822 10873 7.051623 TGCCTACGAGTTTTCCACATATTATT 58.948 34.615 0.00 0.00 0.00 1.40
1823 10874 7.225931 TGCCTACGAGTTTTCCACATATTATTC 59.774 37.037 0.00 0.00 0.00 1.75
1824 10875 7.441458 GCCTACGAGTTTTCCACATATTATTCT 59.559 37.037 0.00 0.00 0.00 2.40
1825 10876 9.326413 CCTACGAGTTTTCCACATATTATTCTT 57.674 33.333 0.00 0.00 0.00 2.52
1827 10878 7.472543 ACGAGTTTTCCACATATTATTCTTGC 58.527 34.615 0.00 0.00 0.00 4.01
1828 10879 7.336931 ACGAGTTTTCCACATATTATTCTTGCT 59.663 33.333 0.00 0.00 0.00 3.91
1829 10880 8.826710 CGAGTTTTCCACATATTATTCTTGCTA 58.173 33.333 0.00 0.00 0.00 3.49
1830 10881 9.937175 GAGTTTTCCACATATTATTCTTGCTAC 57.063 33.333 0.00 0.00 0.00 3.58
1831 10882 9.686683 AGTTTTCCACATATTATTCTTGCTACT 57.313 29.630 0.00 0.00 0.00 2.57
1832 10883 9.722056 GTTTTCCACATATTATTCTTGCTACTG 57.278 33.333 0.00 0.00 0.00 2.74
1833 10884 9.461312 TTTTCCACATATTATTCTTGCTACTGT 57.539 29.630 0.00 0.00 0.00 3.55
1834 10885 9.461312 TTTCCACATATTATTCTTGCTACTGTT 57.539 29.630 0.00 0.00 0.00 3.16
1836 10887 9.764363 TCCACATATTATTCTTGCTACTGTTAG 57.236 33.333 0.00 0.00 0.00 2.34
1837 10888 9.547753 CCACATATTATTCTTGCTACTGTTAGT 57.452 33.333 0.00 0.00 0.00 2.24
1839 10890 9.046296 ACATATTATTCTTGCTACTGTTAGTGC 57.954 33.333 0.00 0.00 0.00 4.40
1840 10891 9.265901 CATATTATTCTTGCTACTGTTAGTGCT 57.734 33.333 0.00 0.00 0.00 4.40
1841 10892 6.968131 TTATTCTTGCTACTGTTAGTGCTG 57.032 37.500 0.00 0.00 0.00 4.41
1842 10893 4.336889 TTCTTGCTACTGTTAGTGCTGT 57.663 40.909 0.00 0.00 0.00 4.40
1843 10894 4.336889 TCTTGCTACTGTTAGTGCTGTT 57.663 40.909 0.00 0.00 0.00 3.16
1844 10895 5.462530 TCTTGCTACTGTTAGTGCTGTTA 57.537 39.130 0.00 0.00 0.00 2.41
1845 10896 5.470368 TCTTGCTACTGTTAGTGCTGTTAG 58.530 41.667 0.00 0.00 0.00 2.34
1846 10897 3.585862 TGCTACTGTTAGTGCTGTTAGC 58.414 45.455 0.00 0.00 42.82 3.09
1847 10898 2.599082 GCTACTGTTAGTGCTGTTAGCG 59.401 50.000 0.00 0.00 46.26 4.26
1848 10899 2.814280 ACTGTTAGTGCTGTTAGCGT 57.186 45.000 0.00 0.00 46.26 5.07
1849 10900 3.107642 ACTGTTAGTGCTGTTAGCGTT 57.892 42.857 0.00 0.00 46.26 4.84
1850 10901 4.247267 ACTGTTAGTGCTGTTAGCGTTA 57.753 40.909 0.00 0.00 46.26 3.18
1851 10902 3.985925 ACTGTTAGTGCTGTTAGCGTTAC 59.014 43.478 0.00 0.00 46.26 2.50
1852 10903 4.235360 CTGTTAGTGCTGTTAGCGTTACT 58.765 43.478 0.00 0.00 46.26 2.24
1853 10904 3.985279 TGTTAGTGCTGTTAGCGTTACTG 59.015 43.478 0.00 0.00 46.26 2.74
1854 10905 1.429463 AGTGCTGTTAGCGTTACTGC 58.571 50.000 9.59 9.59 46.26 4.40
1855 10906 1.000955 AGTGCTGTTAGCGTTACTGCT 59.999 47.619 14.87 6.87 46.26 4.24
1856 10907 1.126846 GTGCTGTTAGCGTTACTGCTG 59.873 52.381 10.82 0.00 46.26 4.41
1857 10908 0.095417 GCTGTTAGCGTTACTGCTGC 59.905 55.000 10.82 0.00 46.70 5.25
1858 10909 1.714794 CTGTTAGCGTTACTGCTGCT 58.285 50.000 10.82 0.61 46.70 4.24
1859 10910 2.069273 CTGTTAGCGTTACTGCTGCTT 58.931 47.619 10.82 0.00 46.70 3.91
1860 10911 2.480419 CTGTTAGCGTTACTGCTGCTTT 59.520 45.455 10.82 0.00 46.70 3.51
1861 10912 2.223144 TGTTAGCGTTACTGCTGCTTTG 59.777 45.455 10.82 0.00 46.70 2.77
1862 10913 2.163818 TAGCGTTACTGCTGCTTTGT 57.836 45.000 10.82 0.01 46.70 2.83
1863 10914 1.308998 AGCGTTACTGCTGCTTTGTT 58.691 45.000 0.00 0.00 45.28 2.83
1864 10915 2.489971 AGCGTTACTGCTGCTTTGTTA 58.510 42.857 0.00 0.00 45.28 2.41
1865 10916 2.223377 AGCGTTACTGCTGCTTTGTTAC 59.777 45.455 0.00 1.25 45.28 2.50
1866 10917 2.664698 GCGTTACTGCTGCTTTGTTACC 60.665 50.000 0.00 0.00 0.00 2.85
1867 10918 2.546368 CGTTACTGCTGCTTTGTTACCA 59.454 45.455 0.00 0.00 0.00 3.25
1868 10919 3.606153 CGTTACTGCTGCTTTGTTACCAC 60.606 47.826 0.00 0.00 0.00 4.16
1869 10920 2.348411 ACTGCTGCTTTGTTACCACT 57.652 45.000 0.00 0.00 0.00 4.00
1870 10921 1.949525 ACTGCTGCTTTGTTACCACTG 59.050 47.619 0.00 0.00 0.00 3.66
1871 10922 0.667993 TGCTGCTTTGTTACCACTGC 59.332 50.000 0.00 0.00 0.00 4.40
1872 10923 0.954452 GCTGCTTTGTTACCACTGCT 59.046 50.000 0.00 0.00 0.00 4.24
1873 10924 1.338020 GCTGCTTTGTTACCACTGCTT 59.662 47.619 0.00 0.00 0.00 3.91
1874 10925 2.223805 GCTGCTTTGTTACCACTGCTTT 60.224 45.455 0.00 0.00 0.00 3.51
1875 10926 3.632189 CTGCTTTGTTACCACTGCTTTC 58.368 45.455 0.00 0.00 0.00 2.62
1876 10927 3.020274 TGCTTTGTTACCACTGCTTTCA 58.980 40.909 0.00 0.00 0.00 2.69
1877 10928 3.445450 TGCTTTGTTACCACTGCTTTCAA 59.555 39.130 0.00 0.00 0.00 2.69
1878 10929 4.081972 TGCTTTGTTACCACTGCTTTCAAA 60.082 37.500 0.00 0.00 0.00 2.69
1879 10930 4.867608 GCTTTGTTACCACTGCTTTCAAAA 59.132 37.500 0.00 0.00 0.00 2.44
1880 10931 5.220397 GCTTTGTTACCACTGCTTTCAAAAC 60.220 40.000 0.00 0.00 0.00 2.43
1881 10932 5.652994 TTGTTACCACTGCTTTCAAAACT 57.347 34.783 0.00 0.00 0.00 2.66
1882 10933 6.761099 TTGTTACCACTGCTTTCAAAACTA 57.239 33.333 0.00 0.00 0.00 2.24
1883 10934 6.952773 TGTTACCACTGCTTTCAAAACTAT 57.047 33.333 0.00 0.00 0.00 2.12
1884 10935 6.966021 TGTTACCACTGCTTTCAAAACTATC 58.034 36.000 0.00 0.00 0.00 2.08
1885 10936 6.544197 TGTTACCACTGCTTTCAAAACTATCA 59.456 34.615 0.00 0.00 0.00 2.15
1886 10937 7.230510 TGTTACCACTGCTTTCAAAACTATCAT 59.769 33.333 0.00 0.00 0.00 2.45
1887 10938 8.726988 GTTACCACTGCTTTCAAAACTATCATA 58.273 33.333 0.00 0.00 0.00 2.15
1888 10939 7.145932 ACCACTGCTTTCAAAACTATCATAC 57.854 36.000 0.00 0.00 0.00 2.39
1889 10940 6.942576 ACCACTGCTTTCAAAACTATCATACT 59.057 34.615 0.00 0.00 0.00 2.12
1890 10941 8.100791 ACCACTGCTTTCAAAACTATCATACTA 58.899 33.333 0.00 0.00 0.00 1.82
1891 10942 8.391106 CCACTGCTTTCAAAACTATCATACTAC 58.609 37.037 0.00 0.00 0.00 2.73
1892 10943 9.155975 CACTGCTTTCAAAACTATCATACTACT 57.844 33.333 0.00 0.00 0.00 2.57
1893 10944 9.155975 ACTGCTTTCAAAACTATCATACTACTG 57.844 33.333 0.00 0.00 0.00 2.74
1894 10945 9.155975 CTGCTTTCAAAACTATCATACTACTGT 57.844 33.333 0.00 0.00 0.00 3.55
1895 10946 8.935844 TGCTTTCAAAACTATCATACTACTGTG 58.064 33.333 0.00 0.00 0.00 3.66
1896 10947 7.905493 GCTTTCAAAACTATCATACTACTGTGC 59.095 37.037 0.00 0.00 0.00 4.57
1897 10948 8.840833 TTTCAAAACTATCATACTACTGTGCA 57.159 30.769 0.00 0.00 0.00 4.57
1898 10949 8.840833 TTCAAAACTATCATACTACTGTGCAA 57.159 30.769 0.00 0.00 0.00 4.08
1899 10950 8.251750 TCAAAACTATCATACTACTGTGCAAC 57.748 34.615 0.00 0.00 37.35 4.17
1900 10951 8.094548 TCAAAACTATCATACTACTGTGCAACT 58.905 33.333 0.00 0.00 38.04 3.16
1901 10952 9.366216 CAAAACTATCATACTACTGTGCAACTA 57.634 33.333 0.00 0.00 38.04 2.24
1902 10953 9.938280 AAAACTATCATACTACTGTGCAACTAA 57.062 29.630 0.00 0.00 38.04 2.24
1914 10965 7.873739 ACTGTGCAACTAATTAATCTTTTGC 57.126 32.000 15.76 15.76 39.80 3.68
1915 10966 7.432869 ACTGTGCAACTAATTAATCTTTTGCA 58.567 30.769 19.12 19.12 45.20 4.08
1932 10983 8.455903 TCTTTTGCAGATATTTAATCTCCAGG 57.544 34.615 0.00 0.00 0.00 4.45
1933 10984 8.055181 TCTTTTGCAGATATTTAATCTCCAGGT 58.945 33.333 0.00 0.00 0.00 4.00
1934 10985 7.572523 TTTGCAGATATTTAATCTCCAGGTG 57.427 36.000 0.00 0.00 0.00 4.00
1935 10986 6.252599 TGCAGATATTTAATCTCCAGGTGT 57.747 37.500 0.00 0.00 0.00 4.16
1936 10987 6.057533 TGCAGATATTTAATCTCCAGGTGTG 58.942 40.000 0.00 0.00 0.00 3.82
1937 10988 5.471456 GCAGATATTTAATCTCCAGGTGTGG 59.529 44.000 0.00 0.00 46.63 4.17
1938 10989 6.595682 CAGATATTTAATCTCCAGGTGTGGT 58.404 40.000 0.00 0.00 45.28 4.16
1939 10990 7.056635 CAGATATTTAATCTCCAGGTGTGGTT 58.943 38.462 0.00 0.00 45.28 3.67
1940 10991 7.012704 CAGATATTTAATCTCCAGGTGTGGTTG 59.987 40.741 0.00 0.00 45.28 3.77
1941 10992 4.715534 TTTAATCTCCAGGTGTGGTTGA 57.284 40.909 0.00 0.00 45.28 3.18
1942 10993 4.715534 TTAATCTCCAGGTGTGGTTGAA 57.284 40.909 0.00 0.00 45.28 2.69
1943 10994 3.814504 AATCTCCAGGTGTGGTTGAAT 57.185 42.857 0.00 0.00 45.28 2.57
1944 10995 3.814504 ATCTCCAGGTGTGGTTGAATT 57.185 42.857 0.00 0.00 45.28 2.17
1945 10996 2.862541 TCTCCAGGTGTGGTTGAATTG 58.137 47.619 0.00 0.00 45.28 2.32
1946 10997 2.441375 TCTCCAGGTGTGGTTGAATTGA 59.559 45.455 0.00 0.00 45.28 2.57
1947 10998 3.074390 TCTCCAGGTGTGGTTGAATTGAT 59.926 43.478 0.00 0.00 45.28 2.57
1948 10999 4.288366 TCTCCAGGTGTGGTTGAATTGATA 59.712 41.667 0.00 0.00 45.28 2.15
1949 11000 4.991776 TCCAGGTGTGGTTGAATTGATAA 58.008 39.130 0.00 0.00 45.28 1.75
1950 11001 4.764823 TCCAGGTGTGGTTGAATTGATAAC 59.235 41.667 0.00 0.00 45.28 1.89
1951 11002 4.766891 CCAGGTGTGGTTGAATTGATAACT 59.233 41.667 0.00 0.00 39.30 2.24
1952 11003 5.106157 CCAGGTGTGGTTGAATTGATAACTC 60.106 44.000 0.00 0.00 39.30 3.01
1953 11004 5.473162 CAGGTGTGGTTGAATTGATAACTCA 59.527 40.000 0.00 0.00 0.00 3.41
1954 11005 6.016360 CAGGTGTGGTTGAATTGATAACTCAA 60.016 38.462 0.00 0.00 45.15 3.02
1955 11006 6.016276 AGGTGTGGTTGAATTGATAACTCAAC 60.016 38.462 7.20 7.20 43.92 3.18
1956 11007 6.016276 GGTGTGGTTGAATTGATAACTCAACT 60.016 38.462 13.37 0.00 45.33 3.16
1957 11008 6.857964 GTGTGGTTGAATTGATAACTCAACTG 59.142 38.462 13.37 0.00 45.33 3.16
1958 11009 5.858581 GTGGTTGAATTGATAACTCAACTGC 59.141 40.000 13.37 5.61 45.33 4.40
1959 11010 5.769662 TGGTTGAATTGATAACTCAACTGCT 59.230 36.000 13.37 0.00 45.33 4.24
1960 11011 6.939730 TGGTTGAATTGATAACTCAACTGCTA 59.060 34.615 13.37 0.00 45.33 3.49
1961 11012 7.446931 TGGTTGAATTGATAACTCAACTGCTAA 59.553 33.333 13.37 0.00 45.33 3.09
1962 11013 8.462016 GGTTGAATTGATAACTCAACTGCTAAT 58.538 33.333 13.37 0.00 45.33 1.73
1965 11016 9.890629 TGAATTGATAACTCAACTGCTAATACT 57.109 29.630 0.00 0.00 43.92 2.12
1968 11019 7.539712 TGATAACTCAACTGCTAATACTTGC 57.460 36.000 0.00 0.00 0.00 4.01
1969 11020 7.102993 TGATAACTCAACTGCTAATACTTGCA 58.897 34.615 0.00 0.00 37.63 4.08
1970 11021 7.606073 TGATAACTCAACTGCTAATACTTGCAA 59.394 33.333 0.00 0.00 38.81 4.08
1971 11022 6.633500 AACTCAACTGCTAATACTTGCAAA 57.367 33.333 0.00 0.00 38.81 3.68
1972 11023 6.824305 ACTCAACTGCTAATACTTGCAAAT 57.176 33.333 0.00 0.00 38.81 2.32
1973 11024 7.921786 ACTCAACTGCTAATACTTGCAAATA 57.078 32.000 0.00 0.00 38.81 1.40
1974 11025 8.511604 ACTCAACTGCTAATACTTGCAAATAT 57.488 30.769 0.00 0.00 38.81 1.28
1975 11026 8.960591 ACTCAACTGCTAATACTTGCAAATATT 58.039 29.630 16.52 16.52 38.81 1.28
1976 11027 9.443283 CTCAACTGCTAATACTTGCAAATATTC 57.557 33.333 15.85 4.68 38.81 1.75
1977 11028 9.177608 TCAACTGCTAATACTTGCAAATATTCT 57.822 29.630 15.85 0.00 38.81 2.40
1978 11029 9.793252 CAACTGCTAATACTTGCAAATATTCTT 57.207 29.630 15.85 0.00 38.81 2.52
1980 11031 9.793252 ACTGCTAATACTTGCAAATATTCTTTG 57.207 29.630 15.85 8.63 38.81 2.77
1981 11032 9.241317 CTGCTAATACTTGCAAATATTCTTTGG 57.759 33.333 15.85 5.21 38.81 3.28
1982 11033 7.706179 TGCTAATACTTGCAAATATTCTTTGGC 59.294 33.333 15.85 13.21 36.15 4.52
1983 11034 7.922811 GCTAATACTTGCAAATATTCTTTGGCT 59.077 33.333 15.85 0.00 0.00 4.75
1984 11035 9.455847 CTAATACTTGCAAATATTCTTTGGCTC 57.544 33.333 15.85 0.00 0.00 4.70
1985 11036 5.990120 ACTTGCAAATATTCTTTGGCTCT 57.010 34.783 0.00 0.00 0.00 4.09
1986 11037 5.958955 ACTTGCAAATATTCTTTGGCTCTC 58.041 37.500 0.00 0.00 0.00 3.20
1987 11038 4.989279 TGCAAATATTCTTTGGCTCTCC 57.011 40.909 0.00 0.00 0.00 3.71
1988 11039 4.603131 TGCAAATATTCTTTGGCTCTCCT 58.397 39.130 0.00 0.00 0.00 3.69
1989 11040 5.018809 TGCAAATATTCTTTGGCTCTCCTT 58.981 37.500 0.00 0.00 0.00 3.36
1990 11041 5.105635 TGCAAATATTCTTTGGCTCTCCTTG 60.106 40.000 0.00 0.00 0.00 3.61
1991 11042 5.105595 GCAAATATTCTTTGGCTCTCCTTGT 60.106 40.000 0.00 0.00 0.00 3.16
1992 11043 6.327934 CAAATATTCTTTGGCTCTCCTTGTG 58.672 40.000 0.00 0.00 0.00 3.33
1993 11044 3.515602 ATTCTTTGGCTCTCCTTGTGT 57.484 42.857 0.00 0.00 0.00 3.72
1994 11045 2.550830 TCTTTGGCTCTCCTTGTGTC 57.449 50.000 0.00 0.00 0.00 3.67
1995 11046 1.151668 CTTTGGCTCTCCTTGTGTCG 58.848 55.000 0.00 0.00 0.00 4.35
1996 11047 0.756294 TTTGGCTCTCCTTGTGTCGA 59.244 50.000 0.00 0.00 0.00 4.20
1997 11048 0.756294 TTGGCTCTCCTTGTGTCGAA 59.244 50.000 0.00 0.00 0.00 3.71
1998 11049 0.976641 TGGCTCTCCTTGTGTCGAAT 59.023 50.000 0.00 0.00 0.00 3.34
1999 11050 1.066858 TGGCTCTCCTTGTGTCGAATC 60.067 52.381 0.00 0.00 0.00 2.52
2000 11051 1.272781 GCTCTCCTTGTGTCGAATCG 58.727 55.000 0.00 0.00 0.00 3.34
2001 11052 1.272781 CTCTCCTTGTGTCGAATCGC 58.727 55.000 0.00 0.00 0.00 4.58
2002 11053 0.888619 TCTCCTTGTGTCGAATCGCT 59.111 50.000 0.00 0.00 0.00 4.93
2003 11054 2.089201 TCTCCTTGTGTCGAATCGCTA 58.911 47.619 0.00 0.00 0.00 4.26
2004 11055 2.490509 TCTCCTTGTGTCGAATCGCTAA 59.509 45.455 0.00 0.00 0.00 3.09
2005 11056 3.057104 TCTCCTTGTGTCGAATCGCTAAA 60.057 43.478 0.00 0.00 0.00 1.85
2006 11057 3.857052 TCCTTGTGTCGAATCGCTAAAT 58.143 40.909 0.00 0.00 0.00 1.40
2007 11058 4.250464 TCCTTGTGTCGAATCGCTAAATT 58.750 39.130 0.00 0.00 0.00 1.82
2008 11059 4.693566 TCCTTGTGTCGAATCGCTAAATTT 59.306 37.500 0.00 0.00 0.00 1.82
2009 11060 4.788100 CCTTGTGTCGAATCGCTAAATTTG 59.212 41.667 0.00 0.00 0.00 2.32
2010 11061 4.335082 TGTGTCGAATCGCTAAATTTGG 57.665 40.909 0.00 0.00 0.00 3.28
2011 11062 3.126171 TGTGTCGAATCGCTAAATTTGGG 59.874 43.478 0.00 0.04 0.00 4.12
2012 11063 3.126343 GTGTCGAATCGCTAAATTTGGGT 59.874 43.478 0.00 0.00 0.00 4.51
2013 11064 3.754323 TGTCGAATCGCTAAATTTGGGTT 59.246 39.130 0.00 0.00 0.00 4.11
2014 11065 4.095610 GTCGAATCGCTAAATTTGGGTTG 58.904 43.478 0.00 0.00 0.00 3.77
2015 11066 4.004314 TCGAATCGCTAAATTTGGGTTGA 58.996 39.130 0.00 0.00 0.00 3.18
2016 11067 4.456222 TCGAATCGCTAAATTTGGGTTGAA 59.544 37.500 0.00 0.00 0.00 2.69
2017 11068 5.124776 TCGAATCGCTAAATTTGGGTTGAAT 59.875 36.000 0.00 0.00 0.00 2.57
2018 11069 6.316640 TCGAATCGCTAAATTTGGGTTGAATA 59.683 34.615 0.00 0.00 0.00 1.75
2019 11070 6.413818 CGAATCGCTAAATTTGGGTTGAATAC 59.586 38.462 0.00 0.00 0.00 1.89
2020 11071 7.404671 AATCGCTAAATTTGGGTTGAATACT 57.595 32.000 0.00 0.00 0.00 2.12
2021 11072 6.431198 TCGCTAAATTTGGGTTGAATACTC 57.569 37.500 0.00 0.00 0.00 2.59
2022 11073 6.177610 TCGCTAAATTTGGGTTGAATACTCT 58.822 36.000 0.00 0.00 0.00 3.24
2023 11074 7.332557 TCGCTAAATTTGGGTTGAATACTCTA 58.667 34.615 0.00 0.00 0.00 2.43
2024 11075 7.279313 TCGCTAAATTTGGGTTGAATACTCTAC 59.721 37.037 0.00 0.00 0.00 2.59
2025 11076 7.466860 CGCTAAATTTGGGTTGAATACTCTACC 60.467 40.741 0.00 0.00 44.19 3.18
2031 11082 4.996788 GGTTGAATACTCTACCCTCGAA 57.003 45.455 0.00 0.00 40.45 3.71
2032 11083 5.334724 GGTTGAATACTCTACCCTCGAAA 57.665 43.478 0.00 0.00 40.45 3.46
2033 11084 5.727434 GGTTGAATACTCTACCCTCGAAAA 58.273 41.667 0.00 0.00 40.45 2.29
2034 11085 5.579904 GGTTGAATACTCTACCCTCGAAAAC 59.420 44.000 0.00 0.00 40.45 2.43
2035 11086 6.396450 GTTGAATACTCTACCCTCGAAAACT 58.604 40.000 0.00 0.00 0.00 2.66
2036 11087 5.962433 TGAATACTCTACCCTCGAAAACTG 58.038 41.667 0.00 0.00 0.00 3.16
2037 11088 5.479375 TGAATACTCTACCCTCGAAAACTGT 59.521 40.000 0.00 0.00 0.00 3.55
2038 11089 5.997384 ATACTCTACCCTCGAAAACTGTT 57.003 39.130 0.00 0.00 0.00 3.16
2039 11090 3.991367 ACTCTACCCTCGAAAACTGTTG 58.009 45.455 0.00 0.00 0.00 3.33
2040 11091 2.737252 CTCTACCCTCGAAAACTGTTGC 59.263 50.000 0.00 0.00 0.00 4.17
2041 11092 1.459592 CTACCCTCGAAAACTGTTGCG 59.540 52.381 9.05 9.05 37.10 4.85
2042 11093 0.179067 ACCCTCGAAAACTGTTGCGA 60.179 50.000 14.99 14.99 42.74 5.10
2043 11094 1.156736 CCCTCGAAAACTGTTGCGAT 58.843 50.000 15.79 0.00 43.94 4.58
2044 11095 1.128692 CCCTCGAAAACTGTTGCGATC 59.871 52.381 15.79 3.49 43.94 3.69
2045 11096 1.128692 CCTCGAAAACTGTTGCGATCC 59.871 52.381 15.79 0.00 43.94 3.36
2046 11097 1.128692 CTCGAAAACTGTTGCGATCCC 59.871 52.381 15.79 0.00 43.94 3.85
2047 11098 0.168128 CGAAAACTGTTGCGATCCCC 59.832 55.000 9.57 0.00 38.11 4.81
2048 11099 1.534729 GAAAACTGTTGCGATCCCCT 58.465 50.000 0.00 0.00 0.00 4.79
2049 11100 2.706890 GAAAACTGTTGCGATCCCCTA 58.293 47.619 0.00 0.00 0.00 3.53
2050 11101 3.279434 GAAAACTGTTGCGATCCCCTAT 58.721 45.455 0.00 0.00 0.00 2.57
2051 11102 4.448210 GAAAACTGTTGCGATCCCCTATA 58.552 43.478 0.00 0.00 0.00 1.31
2052 11103 3.470645 AACTGTTGCGATCCCCTATAC 57.529 47.619 0.00 0.00 0.00 1.47
2053 11104 2.679082 ACTGTTGCGATCCCCTATACT 58.321 47.619 0.00 0.00 0.00 2.12
2054 11105 3.039011 ACTGTTGCGATCCCCTATACTT 58.961 45.455 0.00 0.00 0.00 2.24
2055 11106 3.181465 ACTGTTGCGATCCCCTATACTTG 60.181 47.826 0.00 0.00 0.00 3.16
2056 11107 2.769663 TGTTGCGATCCCCTATACTTGT 59.230 45.455 0.00 0.00 0.00 3.16
2057 11108 3.131396 GTTGCGATCCCCTATACTTGTG 58.869 50.000 0.00 0.00 0.00 3.33
2058 11109 1.691976 TGCGATCCCCTATACTTGTGG 59.308 52.381 0.00 0.00 0.00 4.17
2059 11110 1.002087 GCGATCCCCTATACTTGTGGG 59.998 57.143 0.00 0.00 40.59 4.61
2060 11111 2.326428 CGATCCCCTATACTTGTGGGT 58.674 52.381 0.00 0.00 39.31 4.51
2061 11112 2.704065 CGATCCCCTATACTTGTGGGTT 59.296 50.000 0.00 0.00 39.31 4.11
2062 11113 3.899360 CGATCCCCTATACTTGTGGGTTA 59.101 47.826 0.00 0.00 39.31 2.85
2063 11114 4.530946 CGATCCCCTATACTTGTGGGTTAT 59.469 45.833 0.00 0.00 39.31 1.89
2064 11115 5.337330 CGATCCCCTATACTTGTGGGTTATC 60.337 48.000 0.00 0.00 39.31 1.75
2065 11116 4.898268 TCCCCTATACTTGTGGGTTATCA 58.102 43.478 0.00 0.00 39.31 2.15
2066 11117 5.290335 TCCCCTATACTTGTGGGTTATCAA 58.710 41.667 0.00 0.00 39.31 2.57
2067 11118 5.368523 TCCCCTATACTTGTGGGTTATCAAG 59.631 44.000 0.00 0.00 44.29 3.02
2068 11119 5.368523 CCCCTATACTTGTGGGTTATCAAGA 59.631 44.000 11.07 0.00 42.22 3.02
2069 11120 6.289064 CCCTATACTTGTGGGTTATCAAGAC 58.711 44.000 11.07 0.00 42.22 3.01
2070 11121 6.289064 CCTATACTTGTGGGTTATCAAGACC 58.711 44.000 11.07 0.00 42.22 3.85
2071 11122 6.099845 CCTATACTTGTGGGTTATCAAGACCT 59.900 42.308 11.07 0.10 42.22 3.85
2072 11123 4.724279 ACTTGTGGGTTATCAAGACCTT 57.276 40.909 11.07 0.00 42.22 3.50
2073 11124 5.061721 ACTTGTGGGTTATCAAGACCTTT 57.938 39.130 11.07 0.00 42.22 3.11
2074 11125 5.454966 ACTTGTGGGTTATCAAGACCTTTT 58.545 37.500 11.07 0.00 42.22 2.27
2075 11126 5.897250 ACTTGTGGGTTATCAAGACCTTTTT 59.103 36.000 11.07 0.00 42.22 1.94
2099 11150 2.588877 CGTTGCCGGGGAGCATAG 60.589 66.667 2.18 0.00 43.64 2.23
2100 11151 2.902343 GTTGCCGGGGAGCATAGC 60.902 66.667 2.18 0.00 43.64 2.97
2101 11152 3.089874 TTGCCGGGGAGCATAGCT 61.090 61.111 2.18 0.00 43.64 3.32
2102 11153 1.764454 TTGCCGGGGAGCATAGCTA 60.764 57.895 2.18 0.00 43.64 3.32
2103 11154 1.127567 TTGCCGGGGAGCATAGCTAT 61.128 55.000 2.18 0.00 43.64 2.97
2104 11155 0.252057 TGCCGGGGAGCATAGCTATA 60.252 55.000 5.77 0.00 39.88 1.31
2105 11156 1.123928 GCCGGGGAGCATAGCTATAT 58.876 55.000 5.77 0.00 39.88 0.86
2106 11157 1.486726 GCCGGGGAGCATAGCTATATT 59.513 52.381 5.77 0.00 39.88 1.28
2107 11158 2.092914 GCCGGGGAGCATAGCTATATTT 60.093 50.000 5.77 0.00 39.88 1.40
2108 11159 3.535561 CCGGGGAGCATAGCTATATTTG 58.464 50.000 5.77 0.00 39.88 2.32
2109 11160 3.055094 CCGGGGAGCATAGCTATATTTGT 60.055 47.826 5.77 0.00 39.88 2.83
2110 11161 4.565652 CCGGGGAGCATAGCTATATTTGTT 60.566 45.833 5.77 0.00 39.88 2.83
2111 11162 4.393062 CGGGGAGCATAGCTATATTTGTTG 59.607 45.833 5.77 0.00 39.88 3.33
2112 11163 5.560724 GGGGAGCATAGCTATATTTGTTGA 58.439 41.667 5.77 0.00 39.88 3.18
2113 11164 5.645497 GGGGAGCATAGCTATATTTGTTGAG 59.355 44.000 5.77 0.00 39.88 3.02
2114 11165 6.234177 GGGAGCATAGCTATATTTGTTGAGT 58.766 40.000 5.77 0.00 39.88 3.41
2115 11166 6.370166 GGGAGCATAGCTATATTTGTTGAGTC 59.630 42.308 5.77 0.00 39.88 3.36
2116 11167 6.931281 GGAGCATAGCTATATTTGTTGAGTCA 59.069 38.462 5.77 0.00 39.88 3.41
2117 11168 7.095439 GGAGCATAGCTATATTTGTTGAGTCAC 60.095 40.741 5.77 0.00 39.88 3.67
2118 11169 7.504403 AGCATAGCTATATTTGTTGAGTCACT 58.496 34.615 5.77 0.00 36.99 3.41
2119 11170 7.989741 AGCATAGCTATATTTGTTGAGTCACTT 59.010 33.333 5.77 0.00 36.99 3.16
2120 11171 8.066595 GCATAGCTATATTTGTTGAGTCACTTG 58.933 37.037 5.77 0.00 0.00 3.16
2121 11172 6.992063 AGCTATATTTGTTGAGTCACTTGG 57.008 37.500 0.00 0.00 0.00 3.61
2122 11173 5.882557 AGCTATATTTGTTGAGTCACTTGGG 59.117 40.000 0.00 0.00 0.00 4.12
2123 11174 5.880332 GCTATATTTGTTGAGTCACTTGGGA 59.120 40.000 0.00 0.00 0.00 4.37
2124 11175 6.543831 GCTATATTTGTTGAGTCACTTGGGAT 59.456 38.462 0.00 0.00 0.00 3.85
2125 11176 7.067494 GCTATATTTGTTGAGTCACTTGGGATT 59.933 37.037 0.00 0.00 0.00 3.01
2126 11177 9.613428 CTATATTTGTTGAGTCACTTGGGATTA 57.387 33.333 0.00 0.00 0.00 1.75
2128 11179 7.781324 ATTTGTTGAGTCACTTGGGATTATT 57.219 32.000 0.00 0.00 0.00 1.40
2129 11180 8.877864 ATTTGTTGAGTCACTTGGGATTATTA 57.122 30.769 0.00 0.00 0.00 0.98
2130 11181 8.877864 TTTGTTGAGTCACTTGGGATTATTAT 57.122 30.769 0.00 0.00 0.00 1.28
2131 11182 8.506168 TTGTTGAGTCACTTGGGATTATTATC 57.494 34.615 0.00 0.00 0.00 1.75
2132 11183 7.861629 TGTTGAGTCACTTGGGATTATTATCT 58.138 34.615 0.00 0.00 0.00 1.98
2133 11184 8.988060 TGTTGAGTCACTTGGGATTATTATCTA 58.012 33.333 0.00 0.00 0.00 1.98
2136 11187 9.607333 TGAGTCACTTGGGATTATTATCTATCT 57.393 33.333 0.00 0.00 0.00 1.98
2159 11210 9.599056 ATCTATCACTATGAAGAATCTGAAGGA 57.401 33.333 0.00 0.00 0.00 3.36
2160 11211 9.599056 TCTATCACTATGAAGAATCTGAAGGAT 57.401 33.333 0.00 0.00 35.97 3.24
2163 11214 7.957002 TCACTATGAAGAATCTGAAGGATACC 58.043 38.462 0.00 0.00 33.71 2.73
2164 11215 7.565029 TCACTATGAAGAATCTGAAGGATACCA 59.435 37.037 0.00 0.00 33.71 3.25
2165 11216 8.206867 CACTATGAAGAATCTGAAGGATACCAA 58.793 37.037 0.00 0.00 33.71 3.67
2166 11217 8.772250 ACTATGAAGAATCTGAAGGATACCAAA 58.228 33.333 0.00 0.00 33.71 3.28
2167 11218 9.618890 CTATGAAGAATCTGAAGGATACCAAAA 57.381 33.333 0.00 0.00 33.71 2.44
2168 11219 7.687941 TGAAGAATCTGAAGGATACCAAAAC 57.312 36.000 0.00 0.00 33.71 2.43
2169 11220 6.659242 TGAAGAATCTGAAGGATACCAAAACC 59.341 38.462 0.00 0.00 33.71 3.27
2170 11221 6.139679 AGAATCTGAAGGATACCAAAACCA 57.860 37.500 0.00 0.00 33.71 3.67
2171 11222 6.552008 AGAATCTGAAGGATACCAAAACCAA 58.448 36.000 0.00 0.00 33.71 3.67
2172 11223 6.660949 AGAATCTGAAGGATACCAAAACCAAG 59.339 38.462 0.00 0.00 33.71 3.61
2173 11224 5.576563 TCTGAAGGATACCAAAACCAAGA 57.423 39.130 0.00 0.00 37.17 3.02
2174 11225 6.139679 TCTGAAGGATACCAAAACCAAGAT 57.860 37.500 0.00 0.00 37.17 2.40
2175 11226 6.552008 TCTGAAGGATACCAAAACCAAGATT 58.448 36.000 0.00 0.00 37.17 2.40
2176 11227 7.010160 TCTGAAGGATACCAAAACCAAGATTT 58.990 34.615 0.00 0.00 37.17 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
188 189 1.301716 GGAGCGTCTGCAAGGAACA 60.302 57.895 0.00 0.00 46.23 3.18
212 213 3.097614 CCGAGAAGGAGAAAGGAACCTA 58.902 50.000 0.00 0.00 45.00 3.08
305 309 3.012518 GTGCACCTTGATGCTAGATGTT 58.987 45.455 5.22 0.00 46.28 2.71
387 391 2.710096 ATTGCGTAGTAGGTGCCATT 57.290 45.000 0.00 0.00 0.00 3.16
411 416 0.994995 CACGTGCCATCGAGAAGAAG 59.005 55.000 0.82 0.00 34.70 2.85
416 421 1.749063 ACTATTCACGTGCCATCGAGA 59.251 47.619 11.67 0.00 34.70 4.04
504 510 7.548075 CGGGACACATCAAAGTTATTTAGTACT 59.452 37.037 0.00 0.00 0.00 2.73
706 712 1.005394 GGTTGTTCGCCTCTTCCGA 60.005 57.895 0.00 0.00 0.00 4.55
720 726 2.564062 TCGGGTTCTACTAACCTGGTTG 59.436 50.000 22.04 13.67 44.79 3.77
722 728 2.174360 GTCGGGTTCTACTAACCTGGT 58.826 52.381 14.20 0.00 44.79 4.00
726 732 3.087781 ACTGAGTCGGGTTCTACTAACC 58.912 50.000 3.50 0.00 39.56 2.85
727 733 6.318396 AGAATACTGAGTCGGGTTCTACTAAC 59.682 42.308 16.08 0.00 0.00 2.34
728 734 6.421485 AGAATACTGAGTCGGGTTCTACTAA 58.579 40.000 16.08 0.00 0.00 2.24
729 735 5.999044 AGAATACTGAGTCGGGTTCTACTA 58.001 41.667 16.08 0.00 0.00 1.82
732 738 7.707624 TTTAAGAATACTGAGTCGGGTTCTA 57.292 36.000 17.28 5.50 0.00 2.10
777 784 4.137543 GGTGAACCATATCATCTTGACCC 58.862 47.826 0.00 0.00 35.64 4.46
778 785 4.137543 GGGTGAACCATATCATCTTGACC 58.862 47.826 1.16 0.00 39.85 4.02
794 801 1.478654 GGCACAAGAAGAAGGGGTGAA 60.479 52.381 0.00 0.00 0.00 3.18
797 804 2.240510 TGGCACAAGAAGAAGGGGT 58.759 52.632 0.00 0.00 31.92 4.95
811 818 5.569355 TCAGAAATGGTAAGATCTTTGGCA 58.431 37.500 14.36 0.00 0.00 4.92
832 839 1.668826 ATGTAGCCCCAGTTCCTTCA 58.331 50.000 0.00 0.00 0.00 3.02
885 892 2.558359 CTCAAGAAAAGGGCGTGGAAAT 59.442 45.455 0.00 0.00 0.00 2.17
967 5222 5.224441 TGAAGTAGTTAATGGGAGGGCTAT 58.776 41.667 0.00 0.00 0.00 2.97
1090 5345 6.362016 CGATCCGAATGAATCAGTCTTTCTAG 59.638 42.308 9.07 0.00 37.95 2.43
1172 5427 4.998671 TGAGAGAAGCATAGAGGTCAAG 57.001 45.455 0.00 0.00 0.00 3.02
1182 5437 4.411540 AGGATTGTACCATGAGAGAAGCAT 59.588 41.667 0.00 0.00 0.00 3.79
1256 5511 1.639298 GATGAACTGTCGGCACCAGC 61.639 60.000 0.00 0.00 41.10 4.85
1440 5696 5.508567 TCTGATCAATTGCATAAGACCCAA 58.491 37.500 0.00 0.00 0.00 4.12
1441 5697 5.114764 TCTGATCAATTGCATAAGACCCA 57.885 39.130 0.00 0.00 0.00 4.51
1461 5717 9.552695 TGTGTTGAAGGGATATCTATATGATCT 57.447 33.333 2.05 0.00 36.65 2.75
1512 5768 2.254546 TCGTGCTTTGGTGAGTCATT 57.745 45.000 0.00 0.00 0.00 2.57
1514 5770 1.939934 CTTTCGTGCTTTGGTGAGTCA 59.060 47.619 0.00 0.00 0.00 3.41
1548 10599 5.707066 AGGCACTCTTCAAATAGGAATCT 57.293 39.130 0.00 0.00 0.00 2.40
1766 10817 6.987404 TCGGTGAATTCGTTGGATGATATTAA 59.013 34.615 0.04 0.00 0.00 1.40
1770 10821 4.394439 TCGGTGAATTCGTTGGATGATA 57.606 40.909 0.04 0.00 0.00 2.15
1771 10822 3.260475 TCGGTGAATTCGTTGGATGAT 57.740 42.857 0.04 0.00 0.00 2.45
1772 10823 2.753055 TCGGTGAATTCGTTGGATGA 57.247 45.000 0.04 0.00 0.00 2.92
1773 10824 2.287915 GGATCGGTGAATTCGTTGGATG 59.712 50.000 0.04 0.00 0.00 3.51
1774 10825 2.093181 TGGATCGGTGAATTCGTTGGAT 60.093 45.455 0.04 1.25 0.00 3.41
1775 10826 1.276705 TGGATCGGTGAATTCGTTGGA 59.723 47.619 0.04 0.00 0.00 3.53
1776 10827 1.732941 TGGATCGGTGAATTCGTTGG 58.267 50.000 0.04 0.00 0.00 3.77
1777 10828 3.683989 CATTGGATCGGTGAATTCGTTG 58.316 45.455 0.04 0.00 0.00 4.10
1778 10829 2.097466 GCATTGGATCGGTGAATTCGTT 59.903 45.455 0.04 0.00 0.00 3.85
1779 10830 1.670811 GCATTGGATCGGTGAATTCGT 59.329 47.619 0.04 0.00 0.00 3.85
1780 10831 1.002468 GGCATTGGATCGGTGAATTCG 60.002 52.381 0.04 0.00 0.00 3.34
1781 10832 2.301346 AGGCATTGGATCGGTGAATTC 58.699 47.619 0.00 0.00 0.00 2.17
1782 10833 2.442236 AGGCATTGGATCGGTGAATT 57.558 45.000 0.00 0.00 0.00 2.17
1783 10834 2.806745 CGTAGGCATTGGATCGGTGAAT 60.807 50.000 0.00 0.00 0.00 2.57
1784 10835 1.472552 CGTAGGCATTGGATCGGTGAA 60.473 52.381 0.00 0.00 0.00 3.18
1785 10836 0.104120 CGTAGGCATTGGATCGGTGA 59.896 55.000 0.00 0.00 0.00 4.02
1786 10837 0.104120 TCGTAGGCATTGGATCGGTG 59.896 55.000 0.00 0.00 0.00 4.94
1787 10838 0.389391 CTCGTAGGCATTGGATCGGT 59.611 55.000 0.00 0.00 0.00 4.69
1788 10839 0.389391 ACTCGTAGGCATTGGATCGG 59.611 55.000 0.00 0.00 0.00 4.18
1789 10840 2.225068 AACTCGTAGGCATTGGATCG 57.775 50.000 0.00 0.00 0.00 3.69
1790 10841 3.312697 GGAAAACTCGTAGGCATTGGATC 59.687 47.826 0.00 0.00 0.00 3.36
1791 10842 3.279434 GGAAAACTCGTAGGCATTGGAT 58.721 45.455 0.00 0.00 0.00 3.41
1792 10843 2.039216 TGGAAAACTCGTAGGCATTGGA 59.961 45.455 0.00 0.00 0.00 3.53
1793 10844 2.161609 GTGGAAAACTCGTAGGCATTGG 59.838 50.000 0.00 0.00 0.00 3.16
1794 10845 2.811431 TGTGGAAAACTCGTAGGCATTG 59.189 45.455 0.00 0.00 0.00 2.82
1795 10846 3.134574 TGTGGAAAACTCGTAGGCATT 57.865 42.857 0.00 0.00 0.00 3.56
1796 10847 2.851263 TGTGGAAAACTCGTAGGCAT 57.149 45.000 0.00 0.00 0.00 4.40
1797 10848 2.851263 ATGTGGAAAACTCGTAGGCA 57.149 45.000 0.00 0.00 0.00 4.75
1798 10849 7.441458 AGAATAATATGTGGAAAACTCGTAGGC 59.559 37.037 0.00 0.00 0.00 3.93
1799 10850 8.888579 AGAATAATATGTGGAAAACTCGTAGG 57.111 34.615 0.00 0.00 0.00 3.18
1801 10852 8.609176 GCAAGAATAATATGTGGAAAACTCGTA 58.391 33.333 0.00 0.00 0.00 3.43
1802 10853 7.336931 AGCAAGAATAATATGTGGAAAACTCGT 59.663 33.333 0.00 0.00 0.00 4.18
1803 10854 7.697691 AGCAAGAATAATATGTGGAAAACTCG 58.302 34.615 0.00 0.00 0.00 4.18
1804 10855 9.937175 GTAGCAAGAATAATATGTGGAAAACTC 57.063 33.333 0.00 0.00 0.00 3.01
1805 10856 9.686683 AGTAGCAAGAATAATATGTGGAAAACT 57.313 29.630 0.00 0.00 0.00 2.66
1806 10857 9.722056 CAGTAGCAAGAATAATATGTGGAAAAC 57.278 33.333 0.00 0.00 0.00 2.43
1807 10858 9.461312 ACAGTAGCAAGAATAATATGTGGAAAA 57.539 29.630 0.00 0.00 0.00 2.29
1808 10859 9.461312 AACAGTAGCAAGAATAATATGTGGAAA 57.539 29.630 0.00 0.00 0.00 3.13
1810 10861 9.764363 CTAACAGTAGCAAGAATAATATGTGGA 57.236 33.333 0.00 0.00 0.00 4.02
1811 10862 9.547753 ACTAACAGTAGCAAGAATAATATGTGG 57.452 33.333 0.00 0.00 0.00 4.17
1813 10864 9.046296 GCACTAACAGTAGCAAGAATAATATGT 57.954 33.333 0.00 0.00 0.00 2.29
1814 10865 9.265901 AGCACTAACAGTAGCAAGAATAATATG 57.734 33.333 0.00 0.00 0.00 1.78
1815 10866 9.265901 CAGCACTAACAGTAGCAAGAATAATAT 57.734 33.333 0.00 0.00 0.00 1.28
1816 10867 8.258007 ACAGCACTAACAGTAGCAAGAATAATA 58.742 33.333 0.00 0.00 0.00 0.98
1817 10868 7.106239 ACAGCACTAACAGTAGCAAGAATAAT 58.894 34.615 0.00 0.00 0.00 1.28
1818 10869 6.464222 ACAGCACTAACAGTAGCAAGAATAA 58.536 36.000 0.00 0.00 0.00 1.40
1819 10870 6.037786 ACAGCACTAACAGTAGCAAGAATA 57.962 37.500 0.00 0.00 0.00 1.75
1820 10871 4.899502 ACAGCACTAACAGTAGCAAGAAT 58.100 39.130 0.00 0.00 0.00 2.40
1821 10872 4.336889 ACAGCACTAACAGTAGCAAGAA 57.663 40.909 0.00 0.00 0.00 2.52
1822 10873 4.336889 AACAGCACTAACAGTAGCAAGA 57.663 40.909 0.00 0.00 0.00 3.02
1823 10874 4.092091 GCTAACAGCACTAACAGTAGCAAG 59.908 45.833 0.00 0.00 41.89 4.01
1824 10875 3.994392 GCTAACAGCACTAACAGTAGCAA 59.006 43.478 0.00 0.00 41.89 3.91
1825 10876 3.585862 GCTAACAGCACTAACAGTAGCA 58.414 45.455 0.00 0.00 41.89 3.49
1826 10877 2.599082 CGCTAACAGCACTAACAGTAGC 59.401 50.000 0.00 0.00 42.58 3.58
1827 10878 3.834610 ACGCTAACAGCACTAACAGTAG 58.165 45.455 0.00 0.00 42.58 2.57
1828 10879 3.928727 ACGCTAACAGCACTAACAGTA 57.071 42.857 0.00 0.00 42.58 2.74
1829 10880 2.814280 ACGCTAACAGCACTAACAGT 57.186 45.000 0.00 0.00 42.58 3.55
1830 10881 4.090066 CAGTAACGCTAACAGCACTAACAG 59.910 45.833 0.00 0.00 42.58 3.16
1831 10882 3.985279 CAGTAACGCTAACAGCACTAACA 59.015 43.478 0.00 0.00 42.58 2.41
1832 10883 3.181533 GCAGTAACGCTAACAGCACTAAC 60.182 47.826 0.00 0.00 42.58 2.34
1833 10884 2.991190 GCAGTAACGCTAACAGCACTAA 59.009 45.455 0.00 0.00 42.58 2.24
1834 10885 2.230508 AGCAGTAACGCTAACAGCACTA 59.769 45.455 0.00 0.00 42.58 2.74
1835 10886 1.000955 AGCAGTAACGCTAACAGCACT 59.999 47.619 0.00 0.00 42.58 4.40
1836 10887 1.126846 CAGCAGTAACGCTAACAGCAC 59.873 52.381 0.00 0.00 42.58 4.40
1837 10888 1.428448 CAGCAGTAACGCTAACAGCA 58.572 50.000 0.00 0.00 42.58 4.41
1838 10889 0.095417 GCAGCAGTAACGCTAACAGC 59.905 55.000 0.00 0.00 41.38 4.40
1839 10890 1.714794 AGCAGCAGTAACGCTAACAG 58.285 50.000 0.00 0.00 41.38 3.16
1840 10891 2.163818 AAGCAGCAGTAACGCTAACA 57.836 45.000 0.00 0.00 41.38 2.41
1841 10892 2.223377 ACAAAGCAGCAGTAACGCTAAC 59.777 45.455 0.00 0.00 41.38 2.34
1842 10893 2.489971 ACAAAGCAGCAGTAACGCTAA 58.510 42.857 0.00 0.00 41.38 3.09
1843 10894 2.163818 ACAAAGCAGCAGTAACGCTA 57.836 45.000 0.00 0.00 41.38 4.26
1844 10895 1.308998 AACAAAGCAGCAGTAACGCT 58.691 45.000 0.00 0.00 45.21 5.07
1845 10896 2.571206 GTAACAAAGCAGCAGTAACGC 58.429 47.619 0.00 0.00 0.00 4.84
1846 10897 3.183237 GGTAACAAAGCAGCAGTAACG 57.817 47.619 0.00 0.00 0.00 3.18
1861 10912 6.966021 TGATAGTTTTGAAAGCAGTGGTAAC 58.034 36.000 0.00 0.00 0.00 2.50
1862 10913 7.759489 ATGATAGTTTTGAAAGCAGTGGTAA 57.241 32.000 0.00 0.00 0.00 2.85
1863 10914 8.100791 AGTATGATAGTTTTGAAAGCAGTGGTA 58.899 33.333 0.00 0.00 0.00 3.25
1864 10915 6.942576 AGTATGATAGTTTTGAAAGCAGTGGT 59.057 34.615 0.00 0.00 0.00 4.16
1865 10916 7.383102 AGTATGATAGTTTTGAAAGCAGTGG 57.617 36.000 0.00 0.00 0.00 4.00
1866 10917 9.155975 AGTAGTATGATAGTTTTGAAAGCAGTG 57.844 33.333 0.00 0.00 0.00 3.66
1867 10918 9.155975 CAGTAGTATGATAGTTTTGAAAGCAGT 57.844 33.333 0.00 0.00 0.00 4.40
1868 10919 9.155975 ACAGTAGTATGATAGTTTTGAAAGCAG 57.844 33.333 0.00 0.00 0.00 4.24
1869 10920 8.935844 CACAGTAGTATGATAGTTTTGAAAGCA 58.064 33.333 0.00 0.00 0.00 3.91
1870 10921 7.905493 GCACAGTAGTATGATAGTTTTGAAAGC 59.095 37.037 0.00 0.00 0.00 3.51
1871 10922 8.935844 TGCACAGTAGTATGATAGTTTTGAAAG 58.064 33.333 0.00 0.00 0.00 2.62
1872 10923 8.840833 TGCACAGTAGTATGATAGTTTTGAAA 57.159 30.769 0.00 0.00 0.00 2.69
1873 10924 8.717821 GTTGCACAGTAGTATGATAGTTTTGAA 58.282 33.333 0.00 0.00 0.00 2.69
1874 10925 8.094548 AGTTGCACAGTAGTATGATAGTTTTGA 58.905 33.333 0.00 0.00 0.00 2.69
1875 10926 8.256611 AGTTGCACAGTAGTATGATAGTTTTG 57.743 34.615 0.00 0.00 0.00 2.44
1876 10927 9.938280 TTAGTTGCACAGTAGTATGATAGTTTT 57.062 29.630 0.00 0.00 0.00 2.43
1888 10939 9.065871 GCAAAAGATTAATTAGTTGCACAGTAG 57.934 33.333 18.51 0.00 40.74 2.57
1889 10940 8.572185 TGCAAAAGATTAATTAGTTGCACAGTA 58.428 29.630 20.64 6.64 44.54 2.74
1890 10941 7.432869 TGCAAAAGATTAATTAGTTGCACAGT 58.567 30.769 20.64 0.00 44.54 3.55
1891 10942 7.809331 TCTGCAAAAGATTAATTAGTTGCACAG 59.191 33.333 20.64 15.36 44.54 3.66
1892 10943 7.656412 TCTGCAAAAGATTAATTAGTTGCACA 58.344 30.769 20.64 13.26 44.54 4.57
1893 10944 8.693542 ATCTGCAAAAGATTAATTAGTTGCAC 57.306 30.769 20.64 4.33 43.52 4.57
1906 10957 9.075678 CCTGGAGATTAAATATCTGCAAAAGAT 57.924 33.333 9.68 0.00 43.98 2.40
1907 10958 8.055181 ACCTGGAGATTAAATATCTGCAAAAGA 58.945 33.333 0.00 0.00 43.98 2.52
1908 10959 8.133627 CACCTGGAGATTAAATATCTGCAAAAG 58.866 37.037 0.00 5.28 43.98 2.27
1909 10960 7.615365 ACACCTGGAGATTAAATATCTGCAAAA 59.385 33.333 0.00 0.00 43.98 2.44
1910 10961 7.067372 CACACCTGGAGATTAAATATCTGCAAA 59.933 37.037 0.00 0.00 43.98 3.68
1911 10962 6.543465 CACACCTGGAGATTAAATATCTGCAA 59.457 38.462 0.00 0.00 43.98 4.08
1912 10963 6.057533 CACACCTGGAGATTAAATATCTGCA 58.942 40.000 0.00 8.38 42.79 4.41
1913 10964 5.471456 CCACACCTGGAGATTAAATATCTGC 59.529 44.000 0.00 0.00 40.55 4.26
1914 10965 6.595682 ACCACACCTGGAGATTAAATATCTG 58.404 40.000 0.00 0.00 40.55 2.90
1915 10966 6.831664 ACCACACCTGGAGATTAAATATCT 57.168 37.500 0.00 0.00 40.55 1.98
1916 10967 7.054124 TCAACCACACCTGGAGATTAAATATC 58.946 38.462 0.00 0.00 40.55 1.63
1917 10968 6.969043 TCAACCACACCTGGAGATTAAATAT 58.031 36.000 0.00 0.00 40.55 1.28
1918 10969 6.381498 TCAACCACACCTGGAGATTAAATA 57.619 37.500 0.00 0.00 40.55 1.40
1919 10970 5.255397 TCAACCACACCTGGAGATTAAAT 57.745 39.130 0.00 0.00 40.55 1.40
1920 10971 4.715534 TCAACCACACCTGGAGATTAAA 57.284 40.909 0.00 0.00 40.55 1.52
1921 10972 4.715534 TTCAACCACACCTGGAGATTAA 57.284 40.909 0.00 0.00 40.55 1.40
1922 10973 4.927267 ATTCAACCACACCTGGAGATTA 57.073 40.909 0.00 0.00 40.55 1.75
1923 10974 3.814504 ATTCAACCACACCTGGAGATT 57.185 42.857 0.00 0.00 40.55 2.40
1924 10975 3.074390 TCAATTCAACCACACCTGGAGAT 59.926 43.478 0.00 0.00 40.55 2.75
1925 10976 2.441375 TCAATTCAACCACACCTGGAGA 59.559 45.455 0.00 0.00 40.55 3.71
1926 10977 2.862541 TCAATTCAACCACACCTGGAG 58.137 47.619 0.00 0.00 40.55 3.86
1927 10978 3.524095 ATCAATTCAACCACACCTGGA 57.476 42.857 0.00 0.00 40.55 3.86
1928 10979 4.766891 AGTTATCAATTCAACCACACCTGG 59.233 41.667 0.00 0.00 44.26 4.45
1929 10980 5.473162 TGAGTTATCAATTCAACCACACCTG 59.527 40.000 0.00 0.00 30.61 4.00
1930 10981 5.630121 TGAGTTATCAATTCAACCACACCT 58.370 37.500 0.00 0.00 30.61 4.00
1931 10982 5.957842 TGAGTTATCAATTCAACCACACC 57.042 39.130 0.00 0.00 30.61 4.16
1939 10990 9.890629 AGTATTAGCAGTTGAGTTATCAATTCA 57.109 29.630 0.00 0.00 46.75 2.57
1942 10993 8.616076 GCAAGTATTAGCAGTTGAGTTATCAAT 58.384 33.333 0.00 0.00 46.75 2.57
1943 10994 7.606073 TGCAAGTATTAGCAGTTGAGTTATCAA 59.394 33.333 0.00 0.00 38.26 2.57
1944 10995 7.102993 TGCAAGTATTAGCAGTTGAGTTATCA 58.897 34.615 0.00 0.00 35.51 2.15
1945 10996 7.539712 TGCAAGTATTAGCAGTTGAGTTATC 57.460 36.000 0.00 0.00 35.51 1.75
1946 10997 7.921786 TTGCAAGTATTAGCAGTTGAGTTAT 57.078 32.000 0.00 0.00 42.39 1.89
1947 10998 7.737972 TTTGCAAGTATTAGCAGTTGAGTTA 57.262 32.000 0.00 0.00 42.39 2.24
1948 10999 6.633500 TTTGCAAGTATTAGCAGTTGAGTT 57.367 33.333 0.00 0.00 42.39 3.01
1949 11000 6.824305 ATTTGCAAGTATTAGCAGTTGAGT 57.176 33.333 0.00 0.00 42.39 3.41
1950 11001 9.443283 GAATATTTGCAAGTATTAGCAGTTGAG 57.557 33.333 22.64 0.00 42.39 3.02
1951 11002 9.177608 AGAATATTTGCAAGTATTAGCAGTTGA 57.822 29.630 22.64 0.00 42.39 3.18
1952 11003 9.793252 AAGAATATTTGCAAGTATTAGCAGTTG 57.207 29.630 22.64 0.00 42.39 3.16
1954 11005 9.793252 CAAAGAATATTTGCAAGTATTAGCAGT 57.207 29.630 22.64 4.57 42.39 4.40
1955 11006 9.241317 CCAAAGAATATTTGCAAGTATTAGCAG 57.759 33.333 22.64 14.61 42.39 4.24
1956 11007 7.706179 GCCAAAGAATATTTGCAAGTATTAGCA 59.294 33.333 22.64 0.00 39.32 3.49
1957 11008 7.922811 AGCCAAAGAATATTTGCAAGTATTAGC 59.077 33.333 22.64 19.06 0.00 3.09
1958 11009 9.455847 GAGCCAAAGAATATTTGCAAGTATTAG 57.544 33.333 22.64 14.34 0.00 1.73
1959 11010 9.189156 AGAGCCAAAGAATATTTGCAAGTATTA 57.811 29.630 22.64 5.33 0.00 0.98
1960 11011 8.071177 AGAGCCAAAGAATATTTGCAAGTATT 57.929 30.769 22.76 22.76 0.00 1.89
1961 11012 7.201857 GGAGAGCCAAAGAATATTTGCAAGTAT 60.202 37.037 8.55 8.55 0.00 2.12
1962 11013 6.095440 GGAGAGCCAAAGAATATTTGCAAGTA 59.905 38.462 3.96 3.96 0.00 2.24
1963 11014 5.105595 GGAGAGCCAAAGAATATTTGCAAGT 60.106 40.000 0.00 0.00 0.00 3.16
1964 11015 5.126707 AGGAGAGCCAAAGAATATTTGCAAG 59.873 40.000 0.00 0.00 36.29 4.01
1965 11016 5.018809 AGGAGAGCCAAAGAATATTTGCAA 58.981 37.500 0.00 0.00 36.29 4.08
1966 11017 4.603131 AGGAGAGCCAAAGAATATTTGCA 58.397 39.130 0.00 0.00 36.29 4.08
1967 11018 5.105595 ACAAGGAGAGCCAAAGAATATTTGC 60.106 40.000 0.00 0.00 36.29 3.68
1968 11019 6.071728 ACACAAGGAGAGCCAAAGAATATTTG 60.072 38.462 0.00 0.00 36.29 2.32
1969 11020 6.012745 ACACAAGGAGAGCCAAAGAATATTT 58.987 36.000 0.00 0.00 36.29 1.40
1970 11021 5.574188 ACACAAGGAGAGCCAAAGAATATT 58.426 37.500 0.00 0.00 36.29 1.28
1971 11022 5.184892 ACACAAGGAGAGCCAAAGAATAT 57.815 39.130 0.00 0.00 36.29 1.28
1972 11023 4.579869 GACACAAGGAGAGCCAAAGAATA 58.420 43.478 0.00 0.00 36.29 1.75
1973 11024 3.416156 GACACAAGGAGAGCCAAAGAAT 58.584 45.455 0.00 0.00 36.29 2.40
1974 11025 2.806745 CGACACAAGGAGAGCCAAAGAA 60.807 50.000 0.00 0.00 36.29 2.52
1975 11026 1.270305 CGACACAAGGAGAGCCAAAGA 60.270 52.381 0.00 0.00 36.29 2.52
1976 11027 1.151668 CGACACAAGGAGAGCCAAAG 58.848 55.000 0.00 0.00 36.29 2.77
1977 11028 0.756294 TCGACACAAGGAGAGCCAAA 59.244 50.000 0.00 0.00 36.29 3.28
1978 11029 0.756294 TTCGACACAAGGAGAGCCAA 59.244 50.000 0.00 0.00 36.29 4.52
1979 11030 0.976641 ATTCGACACAAGGAGAGCCA 59.023 50.000 0.00 0.00 36.29 4.75
1980 11031 1.646189 GATTCGACACAAGGAGAGCC 58.354 55.000 0.00 0.00 0.00 4.70
1981 11032 1.272781 CGATTCGACACAAGGAGAGC 58.727 55.000 0.00 0.00 0.00 4.09
1982 11033 1.135257 AGCGATTCGACACAAGGAGAG 60.135 52.381 10.88 0.00 0.00 3.20
1983 11034 0.888619 AGCGATTCGACACAAGGAGA 59.111 50.000 10.88 0.00 0.00 3.71
1984 11035 2.561733 TAGCGATTCGACACAAGGAG 57.438 50.000 10.88 0.00 0.00 3.69
1985 11036 3.306917 TTTAGCGATTCGACACAAGGA 57.693 42.857 10.88 0.00 0.00 3.36
1986 11037 4.600012 AATTTAGCGATTCGACACAAGG 57.400 40.909 10.88 0.00 0.00 3.61
1987 11038 4.788100 CCAAATTTAGCGATTCGACACAAG 59.212 41.667 10.88 0.00 0.00 3.16
1988 11039 4.378978 CCCAAATTTAGCGATTCGACACAA 60.379 41.667 10.88 0.00 0.00 3.33
1989 11040 3.126171 CCCAAATTTAGCGATTCGACACA 59.874 43.478 10.88 0.00 0.00 3.72
1990 11041 3.126343 ACCCAAATTTAGCGATTCGACAC 59.874 43.478 10.88 0.00 0.00 3.67
1991 11042 3.340034 ACCCAAATTTAGCGATTCGACA 58.660 40.909 10.88 0.00 0.00 4.35
1992 11043 4.095610 CAACCCAAATTTAGCGATTCGAC 58.904 43.478 10.88 1.21 0.00 4.20
1993 11044 4.004314 TCAACCCAAATTTAGCGATTCGA 58.996 39.130 10.88 0.00 0.00 3.71
1994 11045 4.349663 TCAACCCAAATTTAGCGATTCG 57.650 40.909 0.62 0.62 0.00 3.34
1995 11046 7.480810 AGTATTCAACCCAAATTTAGCGATTC 58.519 34.615 0.00 0.00 0.00 2.52
1996 11047 7.339466 AGAGTATTCAACCCAAATTTAGCGATT 59.661 33.333 0.00 0.00 0.00 3.34
1997 11048 6.828785 AGAGTATTCAACCCAAATTTAGCGAT 59.171 34.615 0.00 0.00 0.00 4.58
1998 11049 6.177610 AGAGTATTCAACCCAAATTTAGCGA 58.822 36.000 0.00 0.00 0.00 4.93
1999 11050 6.436843 AGAGTATTCAACCCAAATTTAGCG 57.563 37.500 0.00 0.00 0.00 4.26
2000 11051 7.704271 GGTAGAGTATTCAACCCAAATTTAGC 58.296 38.462 0.00 0.00 0.00 3.09
2010 11061 4.996788 TTCGAGGGTAGAGTATTCAACC 57.003 45.455 0.00 0.00 0.00 3.77
2011 11062 6.310711 CAGTTTTCGAGGGTAGAGTATTCAAC 59.689 42.308 0.00 0.00 0.00 3.18
2012 11063 6.014840 ACAGTTTTCGAGGGTAGAGTATTCAA 60.015 38.462 0.00 0.00 0.00 2.69
2013 11064 5.479375 ACAGTTTTCGAGGGTAGAGTATTCA 59.521 40.000 0.00 0.00 0.00 2.57
2014 11065 5.963594 ACAGTTTTCGAGGGTAGAGTATTC 58.036 41.667 0.00 0.00 0.00 1.75
2015 11066 5.997384 ACAGTTTTCGAGGGTAGAGTATT 57.003 39.130 0.00 0.00 0.00 1.89
2016 11067 5.721232 CAACAGTTTTCGAGGGTAGAGTAT 58.279 41.667 0.00 0.00 0.00 2.12
2017 11068 4.560108 GCAACAGTTTTCGAGGGTAGAGTA 60.560 45.833 0.00 0.00 0.00 2.59
2018 11069 3.802675 GCAACAGTTTTCGAGGGTAGAGT 60.803 47.826 0.00 0.00 0.00 3.24
2019 11070 2.737252 GCAACAGTTTTCGAGGGTAGAG 59.263 50.000 0.00 0.00 0.00 2.43
2020 11071 2.762745 GCAACAGTTTTCGAGGGTAGA 58.237 47.619 0.00 0.00 0.00 2.59
2021 11072 1.459592 CGCAACAGTTTTCGAGGGTAG 59.540 52.381 0.00 0.00 0.00 3.18
2022 11073 1.068895 TCGCAACAGTTTTCGAGGGTA 59.931 47.619 3.87 0.00 0.00 3.69
2023 11074 0.179067 TCGCAACAGTTTTCGAGGGT 60.179 50.000 3.87 0.00 0.00 4.34
2024 11075 1.128692 GATCGCAACAGTTTTCGAGGG 59.871 52.381 11.65 0.00 34.30 4.30
2025 11076 1.128692 GGATCGCAACAGTTTTCGAGG 59.871 52.381 11.65 0.00 34.30 4.63
2026 11077 1.128692 GGGATCGCAACAGTTTTCGAG 59.871 52.381 4.64 0.00 34.30 4.04
2027 11078 1.153353 GGGATCGCAACAGTTTTCGA 58.847 50.000 4.64 9.18 35.34 3.71
2028 11079 0.168128 GGGGATCGCAACAGTTTTCG 59.832 55.000 12.32 0.00 0.00 3.46
2029 11080 1.534729 AGGGGATCGCAACAGTTTTC 58.465 50.000 12.32 0.00 0.00 2.29
2030 11081 2.871096 TAGGGGATCGCAACAGTTTT 57.129 45.000 12.32 0.00 0.00 2.43
2031 11082 3.454812 AGTATAGGGGATCGCAACAGTTT 59.545 43.478 12.32 0.00 0.00 2.66
2032 11083 3.039011 AGTATAGGGGATCGCAACAGTT 58.961 45.455 12.32 0.00 0.00 3.16
2033 11084 2.679082 AGTATAGGGGATCGCAACAGT 58.321 47.619 12.32 0.00 0.00 3.55
2034 11085 3.181465 ACAAGTATAGGGGATCGCAACAG 60.181 47.826 12.32 4.14 0.00 3.16
2035 11086 2.769663 ACAAGTATAGGGGATCGCAACA 59.230 45.455 12.32 0.00 0.00 3.33
2036 11087 3.131396 CACAAGTATAGGGGATCGCAAC 58.869 50.000 12.32 4.19 0.00 4.17
2037 11088 2.104111 CCACAAGTATAGGGGATCGCAA 59.896 50.000 12.32 0.00 0.00 4.85
2038 11089 1.691976 CCACAAGTATAGGGGATCGCA 59.308 52.381 12.32 0.00 0.00 5.10
2039 11090 1.002087 CCCACAAGTATAGGGGATCGC 59.998 57.143 0.06 0.06 43.57 4.58
2046 11097 6.099845 AGGTCTTGATAACCCACAAGTATAGG 59.900 42.308 0.00 0.00 42.50 2.57
2047 11098 7.125792 AGGTCTTGATAACCCACAAGTATAG 57.874 40.000 0.00 0.00 42.50 1.31
2048 11099 7.504926 AAGGTCTTGATAACCCACAAGTATA 57.495 36.000 0.00 0.00 42.50 1.47
2049 11100 6.388619 AAGGTCTTGATAACCCACAAGTAT 57.611 37.500 0.00 0.00 42.50 2.12
2050 11101 5.836024 AAGGTCTTGATAACCCACAAGTA 57.164 39.130 0.00 0.00 42.50 2.24
2051 11102 4.724279 AAGGTCTTGATAACCCACAAGT 57.276 40.909 0.00 0.00 42.50 3.16
2052 11103 6.405278 AAAAAGGTCTTGATAACCCACAAG 57.595 37.500 0.00 0.00 43.03 3.16
2083 11134 2.040009 TAGCTATGCTCCCCGGCAAC 62.040 60.000 0.00 0.00 45.68 4.17
2084 11135 1.127567 ATAGCTATGCTCCCCGGCAA 61.128 55.000 5.15 0.00 45.68 4.52
2085 11136 0.252057 TATAGCTATGCTCCCCGGCA 60.252 55.000 16.77 0.00 46.63 5.69
2086 11137 1.123928 ATATAGCTATGCTCCCCGGC 58.876 55.000 16.77 0.00 40.44 6.13
2087 11138 3.055094 ACAAATATAGCTATGCTCCCCGG 60.055 47.826 16.77 0.00 40.44 5.73
2088 11139 4.207891 ACAAATATAGCTATGCTCCCCG 57.792 45.455 16.77 1.30 40.44 5.73
2089 11140 5.560724 TCAACAAATATAGCTATGCTCCCC 58.439 41.667 16.77 0.00 40.44 4.81
2090 11141 6.234177 ACTCAACAAATATAGCTATGCTCCC 58.766 40.000 16.77 0.00 40.44 4.30
2091 11142 6.931281 TGACTCAACAAATATAGCTATGCTCC 59.069 38.462 16.77 0.00 40.44 4.70
2092 11143 7.655328 AGTGACTCAACAAATATAGCTATGCTC 59.345 37.037 16.77 0.00 40.44 4.26
2093 11144 7.504403 AGTGACTCAACAAATATAGCTATGCT 58.496 34.615 16.77 0.62 43.41 3.79
2094 11145 7.721286 AGTGACTCAACAAATATAGCTATGC 57.279 36.000 16.77 0.00 0.00 3.14
2095 11146 8.554528 CCAAGTGACTCAACAAATATAGCTATG 58.445 37.037 16.77 3.42 0.00 2.23
2096 11147 7.716998 CCCAAGTGACTCAACAAATATAGCTAT 59.283 37.037 11.77 11.77 0.00 2.97
2097 11148 7.047891 CCCAAGTGACTCAACAAATATAGCTA 58.952 38.462 0.00 0.00 0.00 3.32
2098 11149 5.882557 CCCAAGTGACTCAACAAATATAGCT 59.117 40.000 0.00 0.00 0.00 3.32
2099 11150 5.880332 TCCCAAGTGACTCAACAAATATAGC 59.120 40.000 0.00 0.00 0.00 2.97
2100 11151 8.511604 AATCCCAAGTGACTCAACAAATATAG 57.488 34.615 0.00 0.00 0.00 1.31
2102 11153 9.479549 AATAATCCCAAGTGACTCAACAAATAT 57.520 29.630 0.00 0.00 0.00 1.28
2103 11154 8.877864 AATAATCCCAAGTGACTCAACAAATA 57.122 30.769 0.00 0.00 0.00 1.40
2104 11155 7.781324 AATAATCCCAAGTGACTCAACAAAT 57.219 32.000 0.00 0.00 0.00 2.32
2105 11156 8.877864 ATAATAATCCCAAGTGACTCAACAAA 57.122 30.769 0.00 0.00 0.00 2.83
2106 11157 8.328758 AGATAATAATCCCAAGTGACTCAACAA 58.671 33.333 0.00 0.00 31.98 2.83
2107 11158 7.861629 AGATAATAATCCCAAGTGACTCAACA 58.138 34.615 0.00 0.00 31.98 3.33
2110 11161 9.607333 AGATAGATAATAATCCCAAGTGACTCA 57.393 33.333 0.00 0.00 31.98 3.41
2133 11184 9.599056 TCCTTCAGATTCTTCATAGTGATAGAT 57.401 33.333 0.00 0.00 0.00 1.98
2134 11185 9.599056 ATCCTTCAGATTCTTCATAGTGATAGA 57.401 33.333 0.00 0.00 0.00 1.98
2137 11188 8.592809 GGTATCCTTCAGATTCTTCATAGTGAT 58.407 37.037 0.00 0.00 36.33 3.06
2138 11189 7.565029 TGGTATCCTTCAGATTCTTCATAGTGA 59.435 37.037 0.00 0.00 36.33 3.41
2139 11190 7.730084 TGGTATCCTTCAGATTCTTCATAGTG 58.270 38.462 0.00 0.00 36.33 2.74
2140 11191 7.921041 TGGTATCCTTCAGATTCTTCATAGT 57.079 36.000 0.00 0.00 36.33 2.12
2141 11192 9.618890 TTTTGGTATCCTTCAGATTCTTCATAG 57.381 33.333 0.00 0.00 36.33 2.23
2142 11193 9.396022 GTTTTGGTATCCTTCAGATTCTTCATA 57.604 33.333 0.00 0.00 36.33 2.15
2143 11194 7.340487 GGTTTTGGTATCCTTCAGATTCTTCAT 59.660 37.037 0.00 0.00 36.33 2.57
2144 11195 6.659242 GGTTTTGGTATCCTTCAGATTCTTCA 59.341 38.462 0.00 0.00 36.33 3.02
2145 11196 6.659242 TGGTTTTGGTATCCTTCAGATTCTTC 59.341 38.462 0.00 0.00 36.33 2.87
2146 11197 6.552008 TGGTTTTGGTATCCTTCAGATTCTT 58.448 36.000 0.00 0.00 36.33 2.52
2147 11198 6.139679 TGGTTTTGGTATCCTTCAGATTCT 57.860 37.500 0.00 0.00 36.33 2.40
2148 11199 6.659242 TCTTGGTTTTGGTATCCTTCAGATTC 59.341 38.462 0.00 0.00 36.33 2.52
2149 11200 6.552008 TCTTGGTTTTGGTATCCTTCAGATT 58.448 36.000 0.00 0.00 36.33 2.40
2150 11201 6.139679 TCTTGGTTTTGGTATCCTTCAGAT 57.860 37.500 0.00 0.00 39.15 2.90
2151 11202 5.576563 TCTTGGTTTTGGTATCCTTCAGA 57.423 39.130 0.00 0.00 0.00 3.27
2152 11203 6.840780 AATCTTGGTTTTGGTATCCTTCAG 57.159 37.500 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.