Multiple sequence alignment - TraesCS4D01G113900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G113900 chr4D 100.000 2513 0 0 1 2513 94695925 94698437 0.000000e+00 4641.0
1 TraesCS4D01G113900 chr4D 85.227 88 13 0 2332 2419 67445236 67445149 9.570000e-15 91.6
2 TraesCS4D01G113900 chr4B 93.219 1637 86 15 698 2330 134046708 134048323 0.000000e+00 2385.0
3 TraesCS4D01G113900 chr4B 86.508 504 48 13 173 670 134046226 134046715 1.020000e-148 536.0
4 TraesCS4D01G113900 chr4B 86.111 72 8 2 1951 2021 72927531 72927601 2.680000e-10 76.8
5 TraesCS4D01G113900 chr4A 94.158 1472 60 15 302 1766 485709692 485708240 0.000000e+00 2218.0
6 TraesCS4D01G113900 chr4A 89.637 579 55 4 1753 2330 485691474 485690900 0.000000e+00 732.0
7 TraesCS4D01G113900 chr4A 87.013 77 9 1 1964 2039 572242853 572242929 4.450000e-13 86.1
8 TraesCS4D01G113900 chr1B 90.526 95 9 0 2332 2426 494157199 494157105 2.620000e-25 126.0
9 TraesCS4D01G113900 chr1A 93.103 87 5 1 2334 2419 139554972 139555058 2.620000e-25 126.0
10 TraesCS4D01G113900 chr7A 91.667 84 7 0 2332 2415 690364545 690364462 1.580000e-22 117.0
11 TraesCS4D01G113900 chr6A 91.765 85 6 1 2332 2416 595486876 595486793 1.580000e-22 117.0
12 TraesCS4D01G113900 chr1D 90.909 88 7 1 2326 2413 461340317 461340403 1.580000e-22 117.0
13 TraesCS4D01G113900 chr2B 88.764 89 9 1 2332 2419 793965021 793964933 9.510000e-20 108.0
14 TraesCS4D01G113900 chr2B 92.000 50 3 1 1970 2018 190669911 190669960 4.490000e-08 69.4
15 TraesCS4D01G113900 chr2A 89.024 82 8 1 2332 2413 733542368 733542448 1.590000e-17 100.0
16 TraesCS4D01G113900 chr2A 87.805 82 10 0 2332 2413 779584892 779584973 2.060000e-16 97.1
17 TraesCS4D01G113900 chr5A 91.667 48 4 0 1447 1494 637622017 637622064 1.610000e-07 67.6
18 TraesCS4D01G113900 chr5D 89.796 49 5 0 1447 1495 509964864 509964912 2.090000e-06 63.9
19 TraesCS4D01G113900 chr5B 89.796 49 5 0 1447 1495 640884735 640884783 2.090000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G113900 chr4D 94695925 94698437 2512 False 4641.0 4641 100.0000 1 2513 1 chr4D.!!$F1 2512
1 TraesCS4D01G113900 chr4B 134046226 134048323 2097 False 1460.5 2385 89.8635 173 2330 2 chr4B.!!$F2 2157
2 TraesCS4D01G113900 chr4A 485708240 485709692 1452 True 2218.0 2218 94.1580 302 1766 1 chr4A.!!$R2 1464
3 TraesCS4D01G113900 chr4A 485690900 485691474 574 True 732.0 732 89.6370 1753 2330 1 chr4A.!!$R1 577

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
199 200 0.031585 CTTCAGTTCGACGTGGTGGA 59.968 55.0 0.0 0.0 0.0 4.02 F
202 203 0.319555 CAGTTCGACGTGGTGGATGT 60.320 55.0 0.0 0.0 0.0 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1244 1257 0.526662 AAGTCGTCCAAGGCTACTCG 59.473 55.0 0.0 0.0 0.0 4.18 R
2188 2202 0.679505 TCCTCACTCCTTGTTCGGTG 59.320 55.0 0.0 0.0 0.0 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.323622 TCAGGCCATGGCTACAGG 58.676 61.111 34.70 19.38 41.60 4.00
21 22 4.175337 GCCATGGCTACAGGCGGA 62.175 66.667 29.98 0.00 44.42 5.54
22 23 2.203070 CCATGGCTACAGGCGGAC 60.203 66.667 0.00 0.00 44.42 4.79
23 24 2.586079 CATGGCTACAGGCGGACG 60.586 66.667 0.00 0.00 44.42 4.79
24 25 2.758327 ATGGCTACAGGCGGACGA 60.758 61.111 0.00 0.00 44.42 4.20
25 26 3.077519 ATGGCTACAGGCGGACGAC 62.078 63.158 0.00 0.00 44.42 4.34
26 27 3.755628 GGCTACAGGCGGACGACA 61.756 66.667 0.00 0.00 42.94 4.35
27 28 2.260434 GCTACAGGCGGACGACAA 59.740 61.111 0.00 0.00 0.00 3.18
28 29 1.805945 GCTACAGGCGGACGACAAG 60.806 63.158 0.00 0.00 0.00 3.16
29 30 1.805945 CTACAGGCGGACGACAAGC 60.806 63.158 0.00 0.00 0.00 4.01
30 31 2.214181 CTACAGGCGGACGACAAGCT 62.214 60.000 0.00 0.00 0.00 3.74
31 32 2.209064 TACAGGCGGACGACAAGCTC 62.209 60.000 0.00 0.00 0.00 4.09
32 33 4.070552 AGGCGGACGACAAGCTCC 62.071 66.667 0.00 0.00 0.00 4.70
36 37 2.963371 GGACGACAAGCTCCGAGT 59.037 61.111 9.59 0.00 0.00 4.18
37 38 1.289380 GGACGACAAGCTCCGAGTT 59.711 57.895 9.59 0.00 0.00 3.01
38 39 1.009389 GGACGACAAGCTCCGAGTTG 61.009 60.000 9.59 3.67 0.00 3.16
39 40 1.618640 GACGACAAGCTCCGAGTTGC 61.619 60.000 9.59 0.00 0.00 4.17
40 41 1.664649 CGACAAGCTCCGAGTTGCA 60.665 57.895 0.00 0.00 0.00 4.08
41 42 1.221466 CGACAAGCTCCGAGTTGCAA 61.221 55.000 0.00 0.00 0.00 4.08
42 43 0.514691 GACAAGCTCCGAGTTGCAAG 59.485 55.000 0.00 0.00 0.00 4.01
43 44 1.208614 CAAGCTCCGAGTTGCAAGC 59.791 57.895 0.00 0.00 34.95 4.01
44 45 2.320587 AAGCTCCGAGTTGCAAGCG 61.321 57.895 13.15 13.15 39.72 4.68
45 46 3.793144 GCTCCGAGTTGCAAGCGG 61.793 66.667 26.54 26.54 46.08 5.52
49 50 2.787249 CGAGTTGCAAGCGGATGG 59.213 61.111 12.46 0.00 0.00 3.51
50 51 2.753966 CGAGTTGCAAGCGGATGGG 61.754 63.158 12.46 0.00 0.00 4.00
51 52 1.675641 GAGTTGCAAGCGGATGGGT 60.676 57.895 0.00 0.00 0.00 4.51
52 53 1.648467 GAGTTGCAAGCGGATGGGTC 61.648 60.000 0.00 0.00 0.00 4.46
53 54 2.745884 TTGCAAGCGGATGGGTCG 60.746 61.111 0.00 0.00 0.00 4.79
54 55 3.545124 TTGCAAGCGGATGGGTCGT 62.545 57.895 0.00 0.00 0.00 4.34
55 56 3.499737 GCAAGCGGATGGGTCGTG 61.500 66.667 0.00 0.00 0.00 4.35
56 57 2.819595 CAAGCGGATGGGTCGTGG 60.820 66.667 0.00 0.00 0.00 4.94
57 58 4.778143 AAGCGGATGGGTCGTGGC 62.778 66.667 0.00 0.00 0.00 5.01
75 76 2.610859 GGCACAGAGGGGAGGGAA 60.611 66.667 0.00 0.00 0.00 3.97
76 77 2.231380 GGCACAGAGGGGAGGGAAA 61.231 63.158 0.00 0.00 0.00 3.13
77 78 1.575447 GGCACAGAGGGGAGGGAAAT 61.575 60.000 0.00 0.00 0.00 2.17
78 79 0.394899 GCACAGAGGGGAGGGAAATG 60.395 60.000 0.00 0.00 0.00 2.32
79 80 0.257039 CACAGAGGGGAGGGAAATGG 59.743 60.000 0.00 0.00 0.00 3.16
80 81 0.921256 ACAGAGGGGAGGGAAATGGG 60.921 60.000 0.00 0.00 0.00 4.00
81 82 0.624500 CAGAGGGGAGGGAAATGGGA 60.625 60.000 0.00 0.00 0.00 4.37
82 83 0.351998 AGAGGGGAGGGAAATGGGAT 59.648 55.000 0.00 0.00 0.00 3.85
83 84 1.235756 GAGGGGAGGGAAATGGGATT 58.764 55.000 0.00 0.00 0.00 3.01
84 85 2.020037 AGAGGGGAGGGAAATGGGATTA 60.020 50.000 0.00 0.00 0.00 1.75
85 86 2.996742 GAGGGGAGGGAAATGGGATTAT 59.003 50.000 0.00 0.00 0.00 1.28
86 87 2.724117 AGGGGAGGGAAATGGGATTATG 59.276 50.000 0.00 0.00 0.00 1.90
87 88 2.225369 GGGGAGGGAAATGGGATTATGG 60.225 54.545 0.00 0.00 0.00 2.74
88 89 2.529632 GGAGGGAAATGGGATTATGGC 58.470 52.381 0.00 0.00 0.00 4.40
89 90 2.110721 GGAGGGAAATGGGATTATGGCT 59.889 50.000 0.00 0.00 0.00 4.75
90 91 3.333680 GGAGGGAAATGGGATTATGGCTA 59.666 47.826 0.00 0.00 0.00 3.93
91 92 4.017130 GGAGGGAAATGGGATTATGGCTAT 60.017 45.833 0.00 0.00 0.00 2.97
92 93 4.939255 AGGGAAATGGGATTATGGCTATG 58.061 43.478 0.00 0.00 0.00 2.23
93 94 4.026052 GGGAAATGGGATTATGGCTATGG 58.974 47.826 0.00 0.00 0.00 2.74
94 95 4.510930 GGGAAATGGGATTATGGCTATGGT 60.511 45.833 0.00 0.00 0.00 3.55
95 96 5.086621 GGAAATGGGATTATGGCTATGGTT 58.913 41.667 0.00 0.00 0.00 3.67
96 97 5.047092 GGAAATGGGATTATGGCTATGGTTG 60.047 44.000 0.00 0.00 0.00 3.77
97 98 3.524095 TGGGATTATGGCTATGGTTGG 57.476 47.619 0.00 0.00 0.00 3.77
98 99 2.109834 TGGGATTATGGCTATGGTTGGG 59.890 50.000 0.00 0.00 0.00 4.12
99 100 2.557452 GGGATTATGGCTATGGTTGGGG 60.557 54.545 0.00 0.00 0.00 4.96
100 101 2.557452 GGATTATGGCTATGGTTGGGGG 60.557 54.545 0.00 0.00 0.00 5.40
101 102 1.614449 TTATGGCTATGGTTGGGGGT 58.386 50.000 0.00 0.00 0.00 4.95
102 103 1.145571 TATGGCTATGGTTGGGGGTC 58.854 55.000 0.00 0.00 0.00 4.46
103 104 1.994885 ATGGCTATGGTTGGGGGTCG 61.995 60.000 0.00 0.00 0.00 4.79
104 105 2.516225 GCTATGGTTGGGGGTCGC 60.516 66.667 0.00 0.00 0.00 5.19
105 106 3.043999 GCTATGGTTGGGGGTCGCT 62.044 63.158 0.00 0.00 0.00 4.93
106 107 1.153168 CTATGGTTGGGGGTCGCTG 60.153 63.158 0.00 0.00 0.00 5.18
107 108 1.910580 CTATGGTTGGGGGTCGCTGT 61.911 60.000 0.00 0.00 0.00 4.40
108 109 1.906105 TATGGTTGGGGGTCGCTGTC 61.906 60.000 0.00 0.00 0.00 3.51
109 110 4.717313 GGTTGGGGGTCGCTGTCC 62.717 72.222 0.00 0.00 0.00 4.02
116 117 4.373116 GGTCGCTGTCCGGCTTGA 62.373 66.667 0.00 0.00 42.32 3.02
117 118 2.357034 GTCGCTGTCCGGCTTGAA 60.357 61.111 0.00 0.00 38.83 2.69
118 119 1.741770 GTCGCTGTCCGGCTTGAAT 60.742 57.895 0.00 0.00 38.83 2.57
119 120 0.459585 GTCGCTGTCCGGCTTGAATA 60.460 55.000 0.00 0.00 38.83 1.75
120 121 0.179111 TCGCTGTCCGGCTTGAATAG 60.179 55.000 0.00 0.00 37.59 1.73
121 122 0.460284 CGCTGTCCGGCTTGAATAGT 60.460 55.000 0.00 0.00 0.00 2.12
122 123 1.291132 GCTGTCCGGCTTGAATAGTC 58.709 55.000 0.00 0.00 0.00 2.59
123 124 1.405526 GCTGTCCGGCTTGAATAGTCA 60.406 52.381 0.00 0.00 0.00 3.41
124 125 2.544685 CTGTCCGGCTTGAATAGTCAG 58.455 52.381 0.00 0.00 34.49 3.51
125 126 2.166459 CTGTCCGGCTTGAATAGTCAGA 59.834 50.000 0.00 0.00 34.49 3.27
126 127 2.766263 TGTCCGGCTTGAATAGTCAGAT 59.234 45.455 0.00 0.00 34.49 2.90
127 128 3.197766 TGTCCGGCTTGAATAGTCAGATT 59.802 43.478 0.00 0.00 34.49 2.40
128 129 4.192317 GTCCGGCTTGAATAGTCAGATTT 58.808 43.478 0.00 0.00 34.49 2.17
129 130 4.034510 GTCCGGCTTGAATAGTCAGATTTG 59.965 45.833 0.00 0.00 34.49 2.32
130 131 3.313526 CCGGCTTGAATAGTCAGATTTGG 59.686 47.826 0.00 0.00 34.49 3.28
131 132 3.242870 CGGCTTGAATAGTCAGATTTGGC 60.243 47.826 0.00 0.00 34.49 4.52
132 133 3.067320 GGCTTGAATAGTCAGATTTGGCC 59.933 47.826 0.00 0.00 34.49 5.36
133 134 3.696051 GCTTGAATAGTCAGATTTGGCCA 59.304 43.478 0.00 0.00 34.49 5.36
134 135 4.439289 GCTTGAATAGTCAGATTTGGCCAC 60.439 45.833 3.88 0.00 34.49 5.01
135 136 4.574674 TGAATAGTCAGATTTGGCCACT 57.425 40.909 3.88 0.00 0.00 4.00
136 137 4.517285 TGAATAGTCAGATTTGGCCACTC 58.483 43.478 3.88 5.51 0.00 3.51
137 138 3.567478 ATAGTCAGATTTGGCCACTCC 57.433 47.619 3.88 0.00 0.00 3.85
138 139 1.366319 AGTCAGATTTGGCCACTCCT 58.634 50.000 3.88 0.00 35.26 3.69
139 140 1.280421 AGTCAGATTTGGCCACTCCTC 59.720 52.381 3.88 0.00 35.26 3.71
140 141 0.250234 TCAGATTTGGCCACTCCTCG 59.750 55.000 3.88 0.00 35.26 4.63
141 142 0.745845 CAGATTTGGCCACTCCTCGG 60.746 60.000 3.88 0.00 35.26 4.63
142 143 0.909610 AGATTTGGCCACTCCTCGGA 60.910 55.000 3.88 0.00 35.26 4.55
143 144 0.744771 GATTTGGCCACTCCTCGGAC 60.745 60.000 3.88 0.00 35.26 4.79
144 145 2.198304 ATTTGGCCACTCCTCGGACC 62.198 60.000 3.88 0.00 35.26 4.46
147 148 3.692406 GCCACTCCTCGGACCGTT 61.692 66.667 14.79 0.00 0.00 4.44
148 149 2.261671 CCACTCCTCGGACCGTTG 59.738 66.667 14.79 8.16 0.00 4.10
149 150 2.261671 CACTCCTCGGACCGTTGG 59.738 66.667 14.79 16.83 0.00 3.77
150 151 2.995574 ACTCCTCGGACCGTTGGG 60.996 66.667 21.85 18.02 40.11 4.12
164 165 2.589338 GTTGGGTTTCGACGAATGTC 57.411 50.000 11.71 5.39 41.91 3.06
165 166 1.196127 GTTGGGTTTCGACGAATGTCC 59.804 52.381 11.71 13.44 42.37 4.02
166 167 0.393448 TGGGTTTCGACGAATGTCCA 59.607 50.000 11.71 15.32 42.37 4.02
167 168 0.794473 GGGTTTCGACGAATGTCCAC 59.206 55.000 11.71 5.98 42.37 4.02
168 169 0.437295 GGTTTCGACGAATGTCCACG 59.563 55.000 11.71 0.00 42.37 4.94
169 170 1.134226 GTTTCGACGAATGTCCACGT 58.866 50.000 11.71 0.00 42.37 4.49
170 171 2.318578 GTTTCGACGAATGTCCACGTA 58.681 47.619 11.71 0.00 42.37 3.57
171 172 1.967762 TTCGACGAATGTCCACGTAC 58.032 50.000 6.10 0.00 42.37 3.67
185 186 2.307929 CACGTACGTCTCACACTTCAG 58.692 52.381 19.94 0.00 0.00 3.02
191 192 2.044860 CGTCTCACACTTCAGTTCGAC 58.955 52.381 0.00 0.00 0.00 4.20
195 196 0.852777 CACACTTCAGTTCGACGTGG 59.147 55.000 0.00 0.00 45.72 4.94
199 200 0.031585 CTTCAGTTCGACGTGGTGGA 59.968 55.000 0.00 0.00 0.00 4.02
202 203 0.319555 CAGTTCGACGTGGTGGATGT 60.320 55.000 0.00 0.00 0.00 3.06
203 204 0.319555 AGTTCGACGTGGTGGATGTG 60.320 55.000 0.00 0.00 0.00 3.21
206 207 1.006688 CGACGTGGTGGATGTGTCA 60.007 57.895 0.00 0.00 0.00 3.58
210 211 1.008875 CGTGGTGGATGTGTCAGACG 61.009 60.000 0.00 0.00 0.00 4.18
215 216 1.213013 GGATGTGTCAGACGCGTCT 59.787 57.895 34.98 34.98 42.57 4.18
216 217 0.450583 GGATGTGTCAGACGCGTCTA 59.549 55.000 38.75 24.82 42.57 2.59
218 219 2.592194 GATGTGTCAGACGCGTCTAAA 58.408 47.619 38.75 27.07 40.47 1.85
224 225 0.458025 CAGACGCGTCTAAACCTCCC 60.458 60.000 38.75 10.39 37.98 4.30
225 226 0.896940 AGACGCGTCTAAACCTCCCA 60.897 55.000 38.67 0.00 38.35 4.37
231 232 3.400255 GCGTCTAAACCTCCCAATATCC 58.600 50.000 0.00 0.00 0.00 2.59
232 233 3.181458 GCGTCTAAACCTCCCAATATCCA 60.181 47.826 0.00 0.00 0.00 3.41
246 247 9.759473 CTCCCAATATCCATTTTAGATATGGTT 57.241 33.333 0.00 0.00 42.58 3.67
266 267 8.920509 ATGGTTTAAATATAAAAAGTGTCGGC 57.079 30.769 0.00 0.00 32.98 5.54
276 277 3.702048 GTGTCGGCCAGCCCTGTA 61.702 66.667 2.24 0.00 0.00 2.74
277 278 3.702048 TGTCGGCCAGCCCTGTAC 61.702 66.667 2.24 0.00 0.00 2.90
278 279 4.814294 GTCGGCCAGCCCTGTACG 62.814 72.222 2.24 3.45 0.00 3.67
286 287 1.612463 CCAGCCCTGTACGTATAGGAC 59.388 57.143 32.96 24.71 36.78 3.85
288 289 0.595095 GCCCTGTACGTATAGGACCG 59.405 60.000 32.96 20.26 36.78 4.79
323 324 1.195674 GCTGAGCCGAGTTTTTGAGAC 59.804 52.381 0.00 0.00 0.00 3.36
409 412 1.592669 GATGGCTCCGTGGATCGTG 60.593 63.158 0.00 0.00 37.94 4.35
410 413 2.978452 GATGGCTCCGTGGATCGTGG 62.978 65.000 0.00 0.00 37.94 4.94
411 414 3.458163 GGCTCCGTGGATCGTGGA 61.458 66.667 0.00 0.07 37.94 4.02
412 415 2.797278 GGCTCCGTGGATCGTGGAT 61.797 63.158 0.31 0.00 37.94 3.41
413 416 1.300233 GCTCCGTGGATCGTGGATC 60.300 63.158 0.31 0.00 38.25 3.36
414 417 1.008424 CTCCGTGGATCGTGGATCG 60.008 63.158 0.31 0.00 39.72 3.69
415 418 1.725557 CTCCGTGGATCGTGGATCGT 61.726 60.000 0.31 0.00 39.72 3.73
416 419 1.588932 CCGTGGATCGTGGATCGTG 60.589 63.158 0.00 0.00 39.72 4.35
476 483 3.377253 AGGCATCATGGTCAACTTGAT 57.623 42.857 0.00 0.00 42.73 2.57
482 489 5.236047 GCATCATGGTCAACTTGATCTCTAC 59.764 44.000 3.69 0.00 40.75 2.59
559 566 1.966451 GGAACTGTCGGTGCCCAAG 60.966 63.158 0.00 0.00 37.69 3.61
595 605 1.705997 AACCCCGCAGACAGGTTTCT 61.706 55.000 0.00 0.00 41.07 2.52
633 643 1.509463 CATTGGCAGACGCAATGCT 59.491 52.632 2.94 0.00 43.35 3.79
672 682 6.045955 GCTCCTCTGTCTTATCCAAACTAAG 58.954 44.000 0.00 0.00 0.00 2.18
676 686 7.674348 TCCTCTGTCTTATCCAAACTAAGAAGA 59.326 37.037 0.00 0.00 37.06 2.87
677 687 8.482128 CCTCTGTCTTATCCAAACTAAGAAGAT 58.518 37.037 0.00 0.00 37.06 2.40
678 688 9.883142 CTCTGTCTTATCCAAACTAAGAAGATT 57.117 33.333 0.00 0.00 37.06 2.40
679 689 9.877178 TCTGTCTTATCCAAACTAAGAAGATTC 57.123 33.333 0.00 0.00 37.06 2.52
680 690 9.658799 CTGTCTTATCCAAACTAAGAAGATTCA 57.341 33.333 0.00 0.00 37.06 2.57
718 728 6.414732 TGGTCCAATCTTAATCGTCAGAAAT 58.585 36.000 0.00 0.00 0.00 2.17
768 778 5.128919 GTCAATAGTCAAAGGATGGATGCT 58.871 41.667 0.00 0.00 0.00 3.79
808 818 0.858583 TGCGATGGATAATGCGTTCG 59.141 50.000 0.00 0.00 0.00 3.95
857 867 4.411327 TCAACTTTCAAACAAGCAGTTCG 58.589 39.130 0.00 0.00 40.26 3.95
859 869 4.900635 ACTTTCAAACAAGCAGTTCGAT 57.099 36.364 0.00 0.00 40.26 3.59
936 946 1.545841 TCCTGCGAGCTCAGTCTTAA 58.454 50.000 15.40 0.00 32.32 1.85
961 971 2.605030 CAGCAAGAGAGAGTGCAGTAC 58.395 52.381 0.00 0.00 43.42 2.73
1029 1040 1.379576 GGGAAGAGGCAATGCAGCT 60.380 57.895 7.79 0.00 34.17 4.24
1244 1257 4.388080 TGCAATGCACGTGCGAGC 62.388 61.111 33.22 32.32 45.27 5.03
1246 1259 3.776849 CAATGCACGTGCGAGCGA 61.777 61.111 33.22 17.73 45.83 4.93
1247 1260 3.481903 AATGCACGTGCGAGCGAG 61.482 61.111 33.22 0.00 45.83 5.03
1372 1385 2.388232 GGCGGGTACAAGAAGTGCG 61.388 63.158 0.00 0.00 33.10 5.34
1425 1438 4.766088 AACGGCTACGACGCGGTC 62.766 66.667 12.47 4.73 41.73 4.79
1559 1572 1.738099 GCATCGAGTGGCGTTGACT 60.738 57.895 0.00 0.00 41.10 3.41
1561 1574 0.439985 CATCGAGTGGCGTTGACTTG 59.560 55.000 0.00 0.00 41.10 3.16
1563 1576 1.594293 CGAGTGGCGTTGACTTGGT 60.594 57.895 0.00 0.00 34.64 3.67
1564 1577 1.831389 CGAGTGGCGTTGACTTGGTG 61.831 60.000 0.00 0.00 34.64 4.17
1574 1587 2.812011 GTTGACTTGGTGGTCGCTTATT 59.188 45.455 0.00 0.00 38.91 1.40
1633 1646 2.932498 TGCATTGCGATTTGTGAGTTC 58.068 42.857 3.84 0.00 0.00 3.01
1655 1668 2.095567 GGCGTATGCATCACATGGAATC 60.096 50.000 0.19 0.00 45.35 2.52
1790 1803 2.481568 GTGCATCCATGATCATACCACG 59.518 50.000 8.15 0.00 0.00 4.94
1794 1807 0.397941 CCATGATCATACCACGCCCT 59.602 55.000 8.15 0.00 0.00 5.19
1848 1861 4.701956 AGTATTTTGGTCGCCATTTCTG 57.298 40.909 0.00 0.00 31.53 3.02
1863 1876 5.163513 CCATTTCTGCATACAAACTCCAAC 58.836 41.667 0.00 0.00 0.00 3.77
1900 1913 6.898041 TGTATGAAGAAATGACGACCAAAAG 58.102 36.000 0.00 0.00 0.00 2.27
1906 1919 5.123227 AGAAATGACGACCAAAAGACTTGA 58.877 37.500 0.00 0.00 0.00 3.02
1944 1957 1.003233 ACCTTCTCCGATTTGGACCAC 59.997 52.381 0.00 0.00 43.74 4.16
1946 1959 2.350522 CTTCTCCGATTTGGACCACAG 58.649 52.381 0.00 0.00 43.74 3.66
2021 2034 7.989947 ACTTGGATCCTCCTACTTAATTACA 57.010 36.000 14.23 0.00 37.46 2.41
2128 2142 0.898320 GCTAGAGAGGCTTCCACACA 59.102 55.000 0.00 0.00 0.00 3.72
2230 2244 4.095483 AGCTCTCAATATTTTTGGTGCTCG 59.905 41.667 0.00 0.00 0.00 5.03
2301 2315 7.283127 TCTCCCACAATATTGAACAAGATTAGC 59.717 37.037 22.16 0.00 31.75 3.09
2306 2320 7.972277 CACAATATTGAACAAGATTAGCTGCTT 59.028 33.333 22.16 0.00 31.75 3.91
2332 2346 7.502120 TGACATACTAGTCGTTTACTATCCC 57.498 40.000 0.00 0.00 39.96 3.85
2333 2347 6.488006 TGACATACTAGTCGTTTACTATCCCC 59.512 42.308 0.00 0.00 39.96 4.81
2334 2348 6.608922 ACATACTAGTCGTTTACTATCCCCT 58.391 40.000 0.00 0.00 39.96 4.79
2335 2349 6.714356 ACATACTAGTCGTTTACTATCCCCTC 59.286 42.308 0.00 0.00 39.96 4.30
2336 2350 5.385628 ACTAGTCGTTTACTATCCCCTCT 57.614 43.478 0.00 0.00 39.96 3.69
2337 2351 5.131784 ACTAGTCGTTTACTATCCCCTCTG 58.868 45.833 0.00 0.00 39.96 3.35
2338 2352 3.978610 AGTCGTTTACTATCCCCTCTGT 58.021 45.455 0.00 0.00 36.36 3.41
2339 2353 5.121380 AGTCGTTTACTATCCCCTCTGTA 57.879 43.478 0.00 0.00 36.36 2.74
2340 2354 5.513233 AGTCGTTTACTATCCCCTCTGTAA 58.487 41.667 0.00 0.00 36.36 2.41
2341 2355 5.954150 AGTCGTTTACTATCCCCTCTGTAAA 59.046 40.000 0.00 0.00 36.36 2.01
2342 2356 6.038985 GTCGTTTACTATCCCCTCTGTAAAC 58.961 44.000 14.04 14.04 45.10 2.01
2343 2357 5.954150 TCGTTTACTATCCCCTCTGTAAACT 59.046 40.000 18.78 0.00 45.76 2.66
2344 2358 7.067494 GTCGTTTACTATCCCCTCTGTAAACTA 59.933 40.741 18.78 10.17 45.76 2.24
2345 2359 7.615365 TCGTTTACTATCCCCTCTGTAAACTAA 59.385 37.037 18.78 9.23 45.76 2.24
2346 2360 8.419442 CGTTTACTATCCCCTCTGTAAACTAAT 58.581 37.037 18.78 0.00 45.76 1.73
2351 2365 9.670442 ACTATCCCCTCTGTAAACTAATATCAA 57.330 33.333 0.00 0.00 0.00 2.57
2354 2368 7.280356 TCCCCTCTGTAAACTAATATCAAAGC 58.720 38.462 0.00 0.00 0.00 3.51
2355 2369 6.202954 CCCCTCTGTAAACTAATATCAAAGCG 59.797 42.308 0.00 0.00 0.00 4.68
2356 2370 6.761714 CCCTCTGTAAACTAATATCAAAGCGT 59.238 38.462 0.00 0.00 0.00 5.07
2357 2371 7.280205 CCCTCTGTAAACTAATATCAAAGCGTT 59.720 37.037 0.00 0.00 0.00 4.84
2358 2372 8.665685 CCTCTGTAAACTAATATCAAAGCGTTT 58.334 33.333 0.00 0.00 0.00 3.60
2366 2380 9.601217 AACTAATATCAAAGCGTTTAGATCACT 57.399 29.630 0.00 0.00 0.00 3.41
2371 2385 7.907214 ATCAAAGCGTTTAGATCACTAAAGT 57.093 32.000 0.00 0.00 45.42 2.66
2372 2386 8.997621 ATCAAAGCGTTTAGATCACTAAAGTA 57.002 30.769 0.00 0.00 45.42 2.24
2373 2387 8.236084 TCAAAGCGTTTAGATCACTAAAGTAC 57.764 34.615 0.00 0.00 45.42 2.73
2374 2388 8.086522 TCAAAGCGTTTAGATCACTAAAGTACT 58.913 33.333 0.00 0.00 45.42 2.73
2375 2389 9.350357 CAAAGCGTTTAGATCACTAAAGTACTA 57.650 33.333 0.00 0.00 45.42 1.82
2376 2390 9.570488 AAAGCGTTTAGATCACTAAAGTACTAG 57.430 33.333 0.00 0.00 45.42 2.57
2377 2391 8.278729 AGCGTTTAGATCACTAAAGTACTAGT 57.721 34.615 0.00 0.00 45.42 2.57
2378 2392 8.397148 AGCGTTTAGATCACTAAAGTACTAGTC 58.603 37.037 0.00 0.00 45.42 2.59
2379 2393 8.397148 GCGTTTAGATCACTAAAGTACTAGTCT 58.603 37.037 0.00 0.00 45.42 3.24
2388 2402 9.790344 TCACTAAAGTACTAGTCTAAACACTCT 57.210 33.333 0.00 0.00 29.36 3.24
2406 2420 9.813446 AAACACTCTTATATTAGTTTACCGAGG 57.187 33.333 0.00 0.00 0.00 4.63
2407 2421 7.949434 ACACTCTTATATTAGTTTACCGAGGG 58.051 38.462 0.00 0.00 0.00 4.30
2408 2422 7.781693 ACACTCTTATATTAGTTTACCGAGGGA 59.218 37.037 0.00 0.00 0.00 4.20
2409 2423 8.298140 CACTCTTATATTAGTTTACCGAGGGAG 58.702 40.741 0.00 0.00 0.00 4.30
2410 2424 8.003629 ACTCTTATATTAGTTTACCGAGGGAGT 58.996 37.037 0.00 0.00 0.00 3.85
2411 2425 9.512588 CTCTTATATTAGTTTACCGAGGGAGTA 57.487 37.037 0.00 0.00 0.00 2.59
2412 2426 9.289782 TCTTATATTAGTTTACCGAGGGAGTAC 57.710 37.037 0.00 0.00 0.00 2.73
2413 2427 9.294614 CTTATATTAGTTTACCGAGGGAGTACT 57.705 37.037 0.00 0.00 0.00 2.73
2416 2430 9.819754 ATATTAGTTTACCGAGGGAGTACTATT 57.180 33.333 0.00 0.00 0.00 1.73
2417 2431 7.961326 TTAGTTTACCGAGGGAGTACTATTT 57.039 36.000 0.00 0.00 0.00 1.40
2418 2432 6.864151 AGTTTACCGAGGGAGTACTATTTT 57.136 37.500 0.00 0.00 0.00 1.82
2419 2433 7.961326 AGTTTACCGAGGGAGTACTATTTTA 57.039 36.000 0.00 0.00 0.00 1.52
2420 2434 7.776107 AGTTTACCGAGGGAGTACTATTTTAC 58.224 38.462 0.00 0.00 0.00 2.01
2421 2435 7.617329 AGTTTACCGAGGGAGTACTATTTTACT 59.383 37.037 0.00 0.00 34.86 2.24
2422 2436 7.961326 TTACCGAGGGAGTACTATTTTACTT 57.039 36.000 0.00 0.00 32.17 2.24
2423 2437 6.218108 ACCGAGGGAGTACTATTTTACTTG 57.782 41.667 0.00 0.00 32.17 3.16
2424 2438 5.718607 ACCGAGGGAGTACTATTTTACTTGT 59.281 40.000 0.00 0.00 32.17 3.16
2425 2439 6.212187 ACCGAGGGAGTACTATTTTACTTGTT 59.788 38.462 0.00 0.00 32.17 2.83
2426 2440 7.397192 ACCGAGGGAGTACTATTTTACTTGTTA 59.603 37.037 0.00 0.00 32.17 2.41
2427 2441 7.704047 CCGAGGGAGTACTATTTTACTTGTTAC 59.296 40.741 0.00 0.00 32.17 2.50
2428 2442 7.430502 CGAGGGAGTACTATTTTACTTGTTACG 59.569 40.741 0.00 0.00 32.17 3.18
2429 2443 8.353423 AGGGAGTACTATTTTACTTGTTACGA 57.647 34.615 0.00 0.00 32.17 3.43
2430 2444 8.975295 AGGGAGTACTATTTTACTTGTTACGAT 58.025 33.333 0.00 0.00 32.17 3.73
2431 2445 9.028185 GGGAGTACTATTTTACTTGTTACGATG 57.972 37.037 0.00 0.00 32.17 3.84
2432 2446 9.793252 GGAGTACTATTTTACTTGTTACGATGA 57.207 33.333 0.00 0.00 32.17 2.92
2441 2455 7.901874 TTACTTGTTACGATGAAAACAAAGC 57.098 32.000 0.00 0.00 43.06 3.51
2442 2456 5.885881 ACTTGTTACGATGAAAACAAAGCA 58.114 33.333 0.00 0.00 43.06 3.91
2443 2457 6.503524 ACTTGTTACGATGAAAACAAAGCAT 58.496 32.000 0.00 0.00 43.06 3.79
2444 2458 6.417635 ACTTGTTACGATGAAAACAAAGCATG 59.582 34.615 0.00 0.00 43.06 4.06
2445 2459 4.679197 TGTTACGATGAAAACAAAGCATGC 59.321 37.500 10.51 10.51 32.86 4.06
2446 2460 3.648339 ACGATGAAAACAAAGCATGCT 57.352 38.095 16.30 16.30 0.00 3.79
2447 2461 3.568538 ACGATGAAAACAAAGCATGCTC 58.431 40.909 22.93 7.32 0.00 4.26
2448 2462 3.004629 ACGATGAAAACAAAGCATGCTCA 59.995 39.130 22.93 13.39 0.00 4.26
2449 2463 3.982701 CGATGAAAACAAAGCATGCTCAA 59.017 39.130 22.93 0.93 0.00 3.02
2450 2464 4.624024 CGATGAAAACAAAGCATGCTCAAT 59.376 37.500 22.93 7.78 0.00 2.57
2451 2465 5.444087 CGATGAAAACAAAGCATGCTCAATG 60.444 40.000 22.93 21.33 39.49 2.82
2461 2475 3.917329 CATGCTCAATGCTTATGGGAG 57.083 47.619 0.00 0.00 43.37 4.30
2462 2476 3.483421 CATGCTCAATGCTTATGGGAGA 58.517 45.455 0.00 0.00 43.37 3.71
2463 2477 3.650281 TGCTCAATGCTTATGGGAGAA 57.350 42.857 0.00 0.00 43.37 2.87
2464 2478 3.966979 TGCTCAATGCTTATGGGAGAAA 58.033 40.909 0.00 0.00 43.37 2.52
2465 2479 4.343231 TGCTCAATGCTTATGGGAGAAAA 58.657 39.130 0.00 0.00 43.37 2.29
2466 2480 4.158394 TGCTCAATGCTTATGGGAGAAAAC 59.842 41.667 0.00 0.00 43.37 2.43
2467 2481 4.158394 GCTCAATGCTTATGGGAGAAAACA 59.842 41.667 0.00 0.00 38.95 2.83
2468 2482 5.336690 GCTCAATGCTTATGGGAGAAAACAA 60.337 40.000 0.00 0.00 38.95 2.83
2469 2483 6.662865 TCAATGCTTATGGGAGAAAACAAA 57.337 33.333 0.00 0.00 0.00 2.83
2470 2484 7.060383 TCAATGCTTATGGGAGAAAACAAAA 57.940 32.000 0.00 0.00 0.00 2.44
2471 2485 7.504403 TCAATGCTTATGGGAGAAAACAAAAA 58.496 30.769 0.00 0.00 0.00 1.94
2472 2486 8.156165 TCAATGCTTATGGGAGAAAACAAAAAT 58.844 29.630 0.00 0.00 0.00 1.82
2473 2487 7.910441 ATGCTTATGGGAGAAAACAAAAATG 57.090 32.000 0.00 0.00 0.00 2.32
2474 2488 6.229733 TGCTTATGGGAGAAAACAAAAATGG 58.770 36.000 0.00 0.00 0.00 3.16
2475 2489 6.183361 TGCTTATGGGAGAAAACAAAAATGGT 60.183 34.615 0.00 0.00 0.00 3.55
2476 2490 6.368791 GCTTATGGGAGAAAACAAAAATGGTC 59.631 38.462 0.00 0.00 0.00 4.02
2477 2491 5.885449 ATGGGAGAAAACAAAAATGGTCA 57.115 34.783 0.00 0.00 0.00 4.02
2478 2492 5.683876 TGGGAGAAAACAAAAATGGTCAA 57.316 34.783 0.00 0.00 0.00 3.18
2479 2493 5.669477 TGGGAGAAAACAAAAATGGTCAAG 58.331 37.500 0.00 0.00 0.00 3.02
2480 2494 5.188751 TGGGAGAAAACAAAAATGGTCAAGT 59.811 36.000 0.00 0.00 0.00 3.16
2481 2495 6.112734 GGGAGAAAACAAAAATGGTCAAGTT 58.887 36.000 0.00 0.00 0.00 2.66
2482 2496 6.037062 GGGAGAAAACAAAAATGGTCAAGTTG 59.963 38.462 0.00 0.00 0.00 3.16
2483 2497 6.816140 GGAGAAAACAAAAATGGTCAAGTTGA 59.184 34.615 0.08 0.08 0.00 3.18
2484 2498 7.333174 GGAGAAAACAAAAATGGTCAAGTTGAA 59.667 33.333 7.25 0.00 0.00 2.69
2485 2499 8.791327 AGAAAACAAAAATGGTCAAGTTGAAT 57.209 26.923 7.25 0.00 0.00 2.57
2486 2500 8.667463 AGAAAACAAAAATGGTCAAGTTGAATG 58.333 29.630 7.25 1.66 0.00 2.67
2487 2501 5.989551 ACAAAAATGGTCAAGTTGAATGC 57.010 34.783 7.25 0.00 0.00 3.56
2488 2502 5.673514 ACAAAAATGGTCAAGTTGAATGCT 58.326 33.333 7.25 0.00 0.00 3.79
2489 2503 6.815089 ACAAAAATGGTCAAGTTGAATGCTA 58.185 32.000 7.25 0.00 0.00 3.49
2490 2504 7.271511 ACAAAAATGGTCAAGTTGAATGCTAA 58.728 30.769 7.25 0.00 0.00 3.09
2491 2505 7.224557 ACAAAAATGGTCAAGTTGAATGCTAAC 59.775 33.333 7.25 0.00 0.00 2.34
2492 2506 6.655078 AAATGGTCAAGTTGAATGCTAACT 57.345 33.333 7.25 0.00 39.92 2.24
2493 2507 6.655078 AATGGTCAAGTTGAATGCTAACTT 57.345 33.333 7.25 0.00 46.23 2.66
2494 2508 6.655078 ATGGTCAAGTTGAATGCTAACTTT 57.345 33.333 7.25 0.00 43.71 2.66
2495 2509 5.830912 TGGTCAAGTTGAATGCTAACTTTG 58.169 37.500 7.25 0.00 43.71 2.77
2496 2510 5.221224 TGGTCAAGTTGAATGCTAACTTTGG 60.221 40.000 7.25 0.00 43.71 3.28
2497 2511 5.009610 GGTCAAGTTGAATGCTAACTTTGGA 59.990 40.000 7.25 0.00 43.71 3.53
2498 2512 6.460953 GGTCAAGTTGAATGCTAACTTTGGAA 60.461 38.462 7.25 0.00 43.71 3.53
2499 2513 6.417930 GTCAAGTTGAATGCTAACTTTGGAAC 59.582 38.462 7.25 0.00 43.71 3.62
2500 2514 6.096141 TCAAGTTGAATGCTAACTTTGGAACA 59.904 34.615 2.20 0.00 43.71 3.18
2501 2515 6.463995 AGTTGAATGCTAACTTTGGAACAA 57.536 33.333 0.00 0.00 35.58 2.83
2502 2516 6.872920 AGTTGAATGCTAACTTTGGAACAAA 58.127 32.000 0.00 0.00 35.58 2.83
2503 2517 6.980397 AGTTGAATGCTAACTTTGGAACAAAG 59.020 34.615 17.47 17.47 35.58 2.77
2504 2518 7.363793 AGTTGAATGCTAACTTTGGAACAAAGT 60.364 33.333 18.64 18.64 41.82 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.047807 GCCTGTAGCCATGGCCTGA 62.048 63.158 33.14 16.29 43.17 3.86
1 2 2.517875 GCCTGTAGCCATGGCCTG 60.518 66.667 33.14 20.77 43.17 4.85
2 3 4.181010 CGCCTGTAGCCATGGCCT 62.181 66.667 33.14 21.61 43.42 5.19
4 5 4.175337 TCCGCCTGTAGCCATGGC 62.175 66.667 30.12 30.12 42.94 4.40
5 6 2.203070 GTCCGCCTGTAGCCATGG 60.203 66.667 7.63 7.63 38.78 3.66
6 7 2.586079 CGTCCGCCTGTAGCCATG 60.586 66.667 0.00 0.00 38.78 3.66
7 8 2.758327 TCGTCCGCCTGTAGCCAT 60.758 61.111 0.00 0.00 38.78 4.40
8 9 3.755628 GTCGTCCGCCTGTAGCCA 61.756 66.667 0.00 0.00 38.78 4.75
9 10 3.291101 TTGTCGTCCGCCTGTAGCC 62.291 63.158 0.00 0.00 38.78 3.93
10 11 1.805945 CTTGTCGTCCGCCTGTAGC 60.806 63.158 0.00 0.00 38.52 3.58
11 12 1.805945 GCTTGTCGTCCGCCTGTAG 60.806 63.158 0.00 0.00 0.00 2.74
12 13 2.209064 GAGCTTGTCGTCCGCCTGTA 62.209 60.000 0.00 0.00 0.00 2.74
13 14 3.575351 GAGCTTGTCGTCCGCCTGT 62.575 63.158 0.00 0.00 0.00 4.00
14 15 2.811317 GAGCTTGTCGTCCGCCTG 60.811 66.667 0.00 0.00 0.00 4.85
15 16 4.070552 GGAGCTTGTCGTCCGCCT 62.071 66.667 0.00 0.00 0.00 5.52
19 20 1.009389 CAACTCGGAGCTTGTCGTCC 61.009 60.000 4.58 0.00 0.00 4.79
20 21 1.618640 GCAACTCGGAGCTTGTCGTC 61.619 60.000 4.58 0.00 0.00 4.20
21 22 1.664965 GCAACTCGGAGCTTGTCGT 60.665 57.895 4.58 0.00 0.00 4.34
22 23 1.221466 TTGCAACTCGGAGCTTGTCG 61.221 55.000 4.58 0.00 0.00 4.35
23 24 0.514691 CTTGCAACTCGGAGCTTGTC 59.485 55.000 4.58 6.42 0.00 3.18
24 25 1.510480 GCTTGCAACTCGGAGCTTGT 61.510 55.000 4.58 0.00 32.54 3.16
25 26 1.208614 GCTTGCAACTCGGAGCTTG 59.791 57.895 4.58 9.89 32.54 4.01
26 27 2.320587 CGCTTGCAACTCGGAGCTT 61.321 57.895 4.58 0.00 33.09 3.74
27 28 2.740055 CGCTTGCAACTCGGAGCT 60.740 61.111 4.58 0.00 33.09 4.09
28 29 3.793144 CCGCTTGCAACTCGGAGC 61.793 66.667 23.74 11.85 45.53 4.70
29 30 2.048222 TCCGCTTGCAACTCGGAG 60.048 61.111 25.61 2.83 46.12 4.63
31 32 2.753966 CCATCCGCTTGCAACTCGG 61.754 63.158 22.66 22.66 44.16 4.63
32 33 2.753966 CCCATCCGCTTGCAACTCG 61.754 63.158 0.00 1.86 0.00 4.18
33 34 1.648467 GACCCATCCGCTTGCAACTC 61.648 60.000 0.00 0.00 0.00 3.01
34 35 1.675641 GACCCATCCGCTTGCAACT 60.676 57.895 0.00 0.00 0.00 3.16
35 36 2.877691 GACCCATCCGCTTGCAAC 59.122 61.111 0.00 0.00 0.00 4.17
36 37 2.745884 CGACCCATCCGCTTGCAA 60.746 61.111 0.00 0.00 0.00 4.08
37 38 4.015406 ACGACCCATCCGCTTGCA 62.015 61.111 0.00 0.00 0.00 4.08
38 39 3.499737 CACGACCCATCCGCTTGC 61.500 66.667 0.00 0.00 0.00 4.01
39 40 2.819595 CCACGACCCATCCGCTTG 60.820 66.667 0.00 0.00 0.00 4.01
40 41 4.778143 GCCACGACCCATCCGCTT 62.778 66.667 0.00 0.00 0.00 4.68
58 59 1.575447 ATTTCCCTCCCCTCTGTGCC 61.575 60.000 0.00 0.00 0.00 5.01
59 60 0.394899 CATTTCCCTCCCCTCTGTGC 60.395 60.000 0.00 0.00 0.00 4.57
60 61 0.257039 CCATTTCCCTCCCCTCTGTG 59.743 60.000 0.00 0.00 0.00 3.66
61 62 0.921256 CCCATTTCCCTCCCCTCTGT 60.921 60.000 0.00 0.00 0.00 3.41
62 63 0.624500 TCCCATTTCCCTCCCCTCTG 60.625 60.000 0.00 0.00 0.00 3.35
63 64 0.351998 ATCCCATTTCCCTCCCCTCT 59.648 55.000 0.00 0.00 0.00 3.69
64 65 1.235756 AATCCCATTTCCCTCCCCTC 58.764 55.000 0.00 0.00 0.00 4.30
65 66 2.624846 TAATCCCATTTCCCTCCCCT 57.375 50.000 0.00 0.00 0.00 4.79
66 67 2.225369 CCATAATCCCATTTCCCTCCCC 60.225 54.545 0.00 0.00 0.00 4.81
67 68 2.823152 GCCATAATCCCATTTCCCTCCC 60.823 54.545 0.00 0.00 0.00 4.30
68 69 2.110721 AGCCATAATCCCATTTCCCTCC 59.889 50.000 0.00 0.00 0.00 4.30
69 70 3.532641 AGCCATAATCCCATTTCCCTC 57.467 47.619 0.00 0.00 0.00 4.30
70 71 4.264532 CCATAGCCATAATCCCATTTCCCT 60.265 45.833 0.00 0.00 0.00 4.20
71 72 4.026052 CCATAGCCATAATCCCATTTCCC 58.974 47.826 0.00 0.00 0.00 3.97
72 73 4.677182 ACCATAGCCATAATCCCATTTCC 58.323 43.478 0.00 0.00 0.00 3.13
73 74 5.047092 CCAACCATAGCCATAATCCCATTTC 60.047 44.000 0.00 0.00 0.00 2.17
74 75 4.840115 CCAACCATAGCCATAATCCCATTT 59.160 41.667 0.00 0.00 0.00 2.32
75 76 4.419282 CCAACCATAGCCATAATCCCATT 58.581 43.478 0.00 0.00 0.00 3.16
76 77 3.245730 CCCAACCATAGCCATAATCCCAT 60.246 47.826 0.00 0.00 0.00 4.00
77 78 2.109834 CCCAACCATAGCCATAATCCCA 59.890 50.000 0.00 0.00 0.00 4.37
78 79 2.557452 CCCCAACCATAGCCATAATCCC 60.557 54.545 0.00 0.00 0.00 3.85
79 80 2.557452 CCCCCAACCATAGCCATAATCC 60.557 54.545 0.00 0.00 0.00 3.01
80 81 2.110011 ACCCCCAACCATAGCCATAATC 59.890 50.000 0.00 0.00 0.00 1.75
81 82 2.110011 GACCCCCAACCATAGCCATAAT 59.890 50.000 0.00 0.00 0.00 1.28
82 83 1.497286 GACCCCCAACCATAGCCATAA 59.503 52.381 0.00 0.00 0.00 1.90
83 84 1.145571 GACCCCCAACCATAGCCATA 58.854 55.000 0.00 0.00 0.00 2.74
84 85 1.930520 GACCCCCAACCATAGCCAT 59.069 57.895 0.00 0.00 0.00 4.40
85 86 2.675242 CGACCCCCAACCATAGCCA 61.675 63.158 0.00 0.00 0.00 4.75
86 87 2.192175 CGACCCCCAACCATAGCC 59.808 66.667 0.00 0.00 0.00 3.93
87 88 2.516225 GCGACCCCCAACCATAGC 60.516 66.667 0.00 0.00 0.00 2.97
88 89 1.153168 CAGCGACCCCCAACCATAG 60.153 63.158 0.00 0.00 0.00 2.23
89 90 1.906105 GACAGCGACCCCCAACCATA 61.906 60.000 0.00 0.00 0.00 2.74
90 91 3.256960 ACAGCGACCCCCAACCAT 61.257 61.111 0.00 0.00 0.00 3.55
91 92 3.948719 GACAGCGACCCCCAACCA 61.949 66.667 0.00 0.00 0.00 3.67
92 93 4.717313 GGACAGCGACCCCCAACC 62.717 72.222 0.00 0.00 0.00 3.77
99 100 3.756288 TATTCAAGCCGGACAGCGACC 62.756 57.143 5.05 0.00 38.01 4.79
100 101 0.459585 TATTCAAGCCGGACAGCGAC 60.460 55.000 5.05 0.00 38.01 5.19
101 102 0.179111 CTATTCAAGCCGGACAGCGA 60.179 55.000 5.05 0.00 38.01 4.93
102 103 0.460284 ACTATTCAAGCCGGACAGCG 60.460 55.000 5.05 0.00 38.01 5.18
103 104 1.291132 GACTATTCAAGCCGGACAGC 58.709 55.000 5.05 0.00 0.00 4.40
104 105 2.166459 TCTGACTATTCAAGCCGGACAG 59.834 50.000 5.05 0.00 0.00 3.51
105 106 2.176045 TCTGACTATTCAAGCCGGACA 58.824 47.619 5.05 0.00 0.00 4.02
106 107 2.961526 TCTGACTATTCAAGCCGGAC 57.038 50.000 5.05 0.00 0.00 4.79
107 108 4.191544 CAAATCTGACTATTCAAGCCGGA 58.808 43.478 5.05 0.00 0.00 5.14
108 109 3.313526 CCAAATCTGACTATTCAAGCCGG 59.686 47.826 0.00 0.00 0.00 6.13
109 110 3.242870 GCCAAATCTGACTATTCAAGCCG 60.243 47.826 0.00 0.00 0.00 5.52
110 111 3.067320 GGCCAAATCTGACTATTCAAGCC 59.933 47.826 0.00 0.00 0.00 4.35
111 112 3.696051 TGGCCAAATCTGACTATTCAAGC 59.304 43.478 0.61 0.00 0.00 4.01
112 113 4.946157 AGTGGCCAAATCTGACTATTCAAG 59.054 41.667 7.24 0.00 0.00 3.02
113 114 4.922206 AGTGGCCAAATCTGACTATTCAA 58.078 39.130 7.24 0.00 0.00 2.69
114 115 4.517285 GAGTGGCCAAATCTGACTATTCA 58.483 43.478 7.24 0.00 0.00 2.57
115 116 3.879892 GGAGTGGCCAAATCTGACTATTC 59.120 47.826 7.24 0.00 36.34 1.75
116 117 3.525199 AGGAGTGGCCAAATCTGACTATT 59.475 43.478 7.24 0.00 40.02 1.73
117 118 3.118531 AGGAGTGGCCAAATCTGACTAT 58.881 45.455 7.24 0.00 40.02 2.12
118 119 2.501723 GAGGAGTGGCCAAATCTGACTA 59.498 50.000 7.24 0.00 40.02 2.59
119 120 1.280421 GAGGAGTGGCCAAATCTGACT 59.720 52.381 7.24 0.00 40.02 3.41
120 121 1.743996 GAGGAGTGGCCAAATCTGAC 58.256 55.000 7.24 0.00 40.02 3.51
121 122 0.250234 CGAGGAGTGGCCAAATCTGA 59.750 55.000 7.24 0.00 40.02 3.27
122 123 0.745845 CCGAGGAGTGGCCAAATCTG 60.746 60.000 7.24 3.55 40.02 2.90
123 124 0.909610 TCCGAGGAGTGGCCAAATCT 60.910 55.000 7.24 4.57 40.02 2.40
124 125 0.744771 GTCCGAGGAGTGGCCAAATC 60.745 60.000 7.24 9.14 40.02 2.17
125 126 1.299976 GTCCGAGGAGTGGCCAAAT 59.700 57.895 7.24 0.00 40.02 2.32
126 127 2.747686 GTCCGAGGAGTGGCCAAA 59.252 61.111 7.24 0.00 40.02 3.28
127 128 3.319198 GGTCCGAGGAGTGGCCAA 61.319 66.667 7.24 0.00 40.02 4.52
130 131 3.692406 AACGGTCCGAGGAGTGGC 61.692 66.667 20.51 0.00 0.00 5.01
131 132 2.261671 CAACGGTCCGAGGAGTGG 59.738 66.667 20.51 0.00 0.00 4.00
132 133 2.261671 CCAACGGTCCGAGGAGTG 59.738 66.667 20.51 7.41 0.00 3.51
133 134 2.995574 CCCAACGGTCCGAGGAGT 60.996 66.667 20.51 0.00 0.00 3.85
134 135 2.108278 AAACCCAACGGTCCGAGGAG 62.108 60.000 20.51 14.46 43.71 3.69
135 136 2.103339 GAAACCCAACGGTCCGAGGA 62.103 60.000 20.51 0.00 43.71 3.71
136 137 1.670083 GAAACCCAACGGTCCGAGG 60.670 63.158 20.51 18.44 43.71 4.63
137 138 2.025418 CGAAACCCAACGGTCCGAG 61.025 63.158 20.51 9.91 43.71 4.63
138 139 2.029369 CGAAACCCAACGGTCCGA 59.971 61.111 20.51 0.00 43.71 4.55
139 140 2.029369 TCGAAACCCAACGGTCCG 59.971 61.111 10.48 10.48 43.71 4.79
140 141 2.312436 CGTCGAAACCCAACGGTCC 61.312 63.158 0.00 0.00 43.71 4.46
141 142 0.875474 TTCGTCGAAACCCAACGGTC 60.875 55.000 4.91 0.00 43.71 4.79
143 144 0.165079 CATTCGTCGAAACCCAACGG 59.835 55.000 12.40 0.00 37.05 4.44
144 145 0.863144 ACATTCGTCGAAACCCAACG 59.137 50.000 12.40 0.00 37.74 4.10
145 146 1.196127 GGACATTCGTCGAAACCCAAC 59.804 52.381 12.40 1.32 43.61 3.77
146 147 1.202663 TGGACATTCGTCGAAACCCAA 60.203 47.619 12.40 2.70 43.61 4.12
147 148 0.393448 TGGACATTCGTCGAAACCCA 59.607 50.000 12.40 15.33 43.61 4.51
148 149 0.794473 GTGGACATTCGTCGAAACCC 59.206 55.000 12.40 13.07 43.61 4.11
149 150 0.437295 CGTGGACATTCGTCGAAACC 59.563 55.000 12.40 15.16 43.61 3.27
150 151 1.134226 ACGTGGACATTCGTCGAAAC 58.866 50.000 12.40 4.27 43.61 2.78
151 152 2.318578 GTACGTGGACATTCGTCGAAA 58.681 47.619 12.40 0.00 43.61 3.46
152 153 1.725611 CGTACGTGGACATTCGTCGAA 60.726 52.381 10.61 10.61 43.61 3.71
153 154 0.179217 CGTACGTGGACATTCGTCGA 60.179 55.000 7.22 0.00 43.61 4.20
154 155 0.453282 ACGTACGTGGACATTCGTCG 60.453 55.000 22.14 0.00 43.61 5.12
155 156 1.135859 AGACGTACGTGGACATTCGTC 60.136 52.381 28.16 6.98 44.82 4.20
156 157 0.877071 AGACGTACGTGGACATTCGT 59.123 50.000 28.16 0.00 42.82 3.85
157 158 1.135888 TGAGACGTACGTGGACATTCG 60.136 52.381 28.16 0.00 0.00 3.34
158 159 2.248487 GTGAGACGTACGTGGACATTC 58.752 52.381 28.16 9.39 0.00 2.67
159 160 1.610038 TGTGAGACGTACGTGGACATT 59.390 47.619 28.16 0.00 0.00 2.71
160 161 1.068748 GTGTGAGACGTACGTGGACAT 60.069 52.381 28.16 6.00 0.00 3.06
161 162 0.308684 GTGTGAGACGTACGTGGACA 59.691 55.000 28.16 20.64 0.00 4.02
162 163 0.590195 AGTGTGAGACGTACGTGGAC 59.410 55.000 28.16 18.33 0.00 4.02
163 164 1.265095 GAAGTGTGAGACGTACGTGGA 59.735 52.381 28.16 6.04 0.00 4.02
164 165 1.002142 TGAAGTGTGAGACGTACGTGG 60.002 52.381 28.16 0.00 0.00 4.94
165 166 2.286831 ACTGAAGTGTGAGACGTACGTG 60.287 50.000 28.16 9.03 0.00 4.49
166 167 1.945394 ACTGAAGTGTGAGACGTACGT 59.055 47.619 23.04 23.04 0.00 3.57
167 168 2.682952 ACTGAAGTGTGAGACGTACG 57.317 50.000 15.01 15.01 0.00 3.67
168 169 2.971915 CGAACTGAAGTGTGAGACGTAC 59.028 50.000 0.00 0.00 0.00 3.67
169 170 2.874086 TCGAACTGAAGTGTGAGACGTA 59.126 45.455 0.00 0.00 0.00 3.57
170 171 1.674441 TCGAACTGAAGTGTGAGACGT 59.326 47.619 0.00 0.00 0.00 4.34
171 172 2.044860 GTCGAACTGAAGTGTGAGACG 58.955 52.381 0.00 0.00 0.00 4.18
185 186 0.599204 ACACATCCACCACGTCGAAC 60.599 55.000 0.00 0.00 0.00 3.95
191 192 1.008875 CGTCTGACACATCCACCACG 61.009 60.000 8.73 0.00 0.00 4.94
195 196 1.344942 GACGCGTCTGACACATCCAC 61.345 60.000 31.12 0.44 0.00 4.02
199 200 2.325761 GTTTAGACGCGTCTGACACAT 58.674 47.619 43.41 23.53 40.71 3.21
202 203 0.956633 AGGTTTAGACGCGTCTGACA 59.043 50.000 43.41 26.65 40.71 3.58
203 204 1.615502 GAGGTTTAGACGCGTCTGAC 58.384 55.000 43.41 37.04 40.71 3.51
206 207 0.896940 TGGGAGGTTTAGACGCGTCT 60.897 55.000 40.17 40.17 43.40 4.18
210 211 3.181458 TGGATATTGGGAGGTTTAGACGC 60.181 47.826 0.00 0.00 0.00 5.19
218 219 8.339247 CCATATCTAAAATGGATATTGGGAGGT 58.661 37.037 0.00 0.00 45.77 3.85
246 247 6.404954 GGCTGGCCGACACTTTTTATATTTAA 60.405 38.462 0.00 0.00 0.00 1.52
254 255 2.200337 GGGCTGGCCGACACTTTTT 61.200 57.895 3.84 0.00 36.85 1.94
256 257 3.570212 AGGGCTGGCCGACACTTT 61.570 61.111 15.17 0.00 36.85 2.66
257 258 4.335647 CAGGGCTGGCCGACACTT 62.336 66.667 15.17 0.00 36.85 3.16
266 267 1.612463 GTCCTATACGTACAGGGCTGG 59.388 57.143 17.28 3.12 33.55 4.85
275 276 4.326826 CCCTTGTATCGGTCCTATACGTA 58.673 47.826 0.00 0.00 33.37 3.57
276 277 3.152341 CCCTTGTATCGGTCCTATACGT 58.848 50.000 8.58 0.00 33.37 3.57
277 278 2.490903 CCCCTTGTATCGGTCCTATACG 59.509 54.545 8.58 0.00 33.37 3.06
278 279 3.257624 CACCCCTTGTATCGGTCCTATAC 59.742 52.174 6.60 6.60 0.00 1.47
286 287 2.203015 CCGCACCCCTTGTATCGG 60.203 66.667 0.00 0.00 36.42 4.18
288 289 1.819632 CAGCCGCACCCCTTGTATC 60.820 63.158 0.00 0.00 0.00 2.24
366 368 3.713003 GGGGGATCAAAGAAATGGAACT 58.287 45.455 0.00 0.00 0.00 3.01
409 412 7.875041 CCAATATATATTCCAGATCCACGATCC 59.125 40.741 4.93 0.00 39.66 3.36
410 413 8.424918 ACCAATATATATTCCAGATCCACGATC 58.575 37.037 4.93 0.00 39.17 3.69
411 414 8.206867 CACCAATATATATTCCAGATCCACGAT 58.793 37.037 4.93 0.00 0.00 3.73
412 415 7.364673 CCACCAATATATATTCCAGATCCACGA 60.365 40.741 4.93 0.00 0.00 4.35
413 416 6.763135 CCACCAATATATATTCCAGATCCACG 59.237 42.308 4.93 0.00 0.00 4.94
414 417 6.543831 GCCACCAATATATATTCCAGATCCAC 59.456 42.308 4.93 0.00 0.00 4.02
415 418 6.217280 TGCCACCAATATATATTCCAGATCCA 59.783 38.462 4.93 0.00 0.00 3.41
416 419 6.662755 TGCCACCAATATATATTCCAGATCC 58.337 40.000 4.93 0.00 0.00 3.36
482 489 0.513820 GTCGTCGCTAGCTAGCTAGG 59.486 60.000 39.60 31.24 46.85 3.02
535 542 2.915659 ACCGACAGTTCCTGCCGA 60.916 61.111 1.42 0.00 39.58 5.54
559 566 4.498513 CGGGGTTTTTGGTTTCTTGTACTC 60.499 45.833 0.00 0.00 0.00 2.59
595 605 1.269517 GCAATGTTTGGCGGAGTTCAA 60.270 47.619 0.00 0.00 0.00 2.69
623 633 1.070975 GTGATCGATGAGCATTGCGTC 60.071 52.381 0.54 2.37 28.52 5.19
629 639 1.145803 CGCATGTGATCGATGAGCAT 58.854 50.000 0.54 1.17 28.52 3.79
633 643 0.598419 GGAGCGCATGTGATCGATGA 60.598 55.000 17.54 0.00 0.00 2.92
672 682 7.779073 ACCAGGAAATGAATTGATGAATCTTC 58.221 34.615 0.00 0.00 0.00 2.87
676 686 5.959594 TGGACCAGGAAATGAATTGATGAAT 59.040 36.000 0.00 0.00 0.00 2.57
677 687 5.331906 TGGACCAGGAAATGAATTGATGAA 58.668 37.500 0.00 0.00 0.00 2.57
678 688 4.933134 TGGACCAGGAAATGAATTGATGA 58.067 39.130 0.00 0.00 0.00 2.92
679 689 5.664294 TTGGACCAGGAAATGAATTGATG 57.336 39.130 0.00 0.00 0.00 3.07
680 690 6.200114 AGATTGGACCAGGAAATGAATTGAT 58.800 36.000 0.00 0.00 0.00 2.57
681 691 5.582953 AGATTGGACCAGGAAATGAATTGA 58.417 37.500 0.00 0.00 0.00 2.57
682 692 5.927281 AGATTGGACCAGGAAATGAATTG 57.073 39.130 0.00 0.00 0.00 2.32
683 693 8.613922 ATTAAGATTGGACCAGGAAATGAATT 57.386 30.769 0.00 0.00 0.00 2.17
684 694 7.013655 CGATTAAGATTGGACCAGGAAATGAAT 59.986 37.037 0.00 0.00 0.00 2.57
768 778 1.217001 GTGATGACACGTTGTGCAGA 58.783 50.000 0.00 0.00 36.98 4.26
808 818 0.548510 AACTGCTATTGGGGAGGAGC 59.451 55.000 0.00 0.00 35.91 4.70
877 887 1.865248 GCCTTTTATAGCGCGTCCGTA 60.865 52.381 8.43 0.00 36.67 4.02
936 946 1.877258 GCACTCTCTCTTGCTGCTTGT 60.877 52.381 0.00 0.00 35.74 3.16
961 971 2.416162 GCTTGTCGTTAGAGAGACCAGG 60.416 54.545 0.00 0.00 36.61 4.45
1029 1040 1.671054 GACAAGCGCCTTACTGCCA 60.671 57.895 2.29 0.00 0.00 4.92
1244 1257 0.526662 AAGTCGTCCAAGGCTACTCG 59.473 55.000 0.00 0.00 0.00 4.18
1245 1258 3.243468 GGATAAGTCGTCCAAGGCTACTC 60.243 52.174 0.00 0.00 35.76 2.59
1246 1259 2.694109 GGATAAGTCGTCCAAGGCTACT 59.306 50.000 0.00 0.00 35.76 2.57
1247 1260 2.223994 GGGATAAGTCGTCCAAGGCTAC 60.224 54.545 0.00 0.00 37.49 3.58
1559 1572 1.349688 AGGACAATAAGCGACCACCAA 59.650 47.619 0.00 0.00 0.00 3.67
1561 1574 1.369625 CAGGACAATAAGCGACCACC 58.630 55.000 0.00 0.00 0.00 4.61
1563 1576 3.153024 GCAGGACAATAAGCGACCA 57.847 52.632 0.00 0.00 0.00 4.02
1633 1646 0.879839 TCCATGTGATGCATACGCCG 60.880 55.000 0.00 0.00 35.74 6.46
1790 1803 4.303257 CGGAGGAGAAAACAGGGC 57.697 61.111 0.00 0.00 0.00 5.19
1848 1861 3.756434 TGCCTAAGTTGGAGTTTGTATGC 59.244 43.478 0.00 0.00 0.00 3.14
1863 1876 9.079833 CATTTCTTCATACAAACAATGCCTAAG 57.920 33.333 0.00 0.00 0.00 2.18
1944 1957 6.970484 AGAAGGCACATAAAAACTTGTACTG 58.030 36.000 0.00 0.00 0.00 2.74
1946 1959 6.966021 TGAGAAGGCACATAAAAACTTGTAC 58.034 36.000 0.00 0.00 0.00 2.90
1982 1995 9.178758 GAGGATCCAAGTATTTGTTTTCATACT 57.821 33.333 15.82 0.00 32.21 2.12
2128 2142 9.396022 CCACCACTAAATAGTCAATCACTAAAT 57.604 33.333 0.00 0.00 41.17 1.40
2144 2158 0.834687 ACCGCTCTCCCACCACTAAA 60.835 55.000 0.00 0.00 0.00 1.85
2188 2202 0.679505 TCCTCACTCCTTGTTCGGTG 59.320 55.000 0.00 0.00 0.00 4.94
2230 2244 1.154035 CATTTCAAAGGGACGCGCC 60.154 57.895 5.73 8.77 0.00 6.53
2261 2275 9.753674 ATATTGTGGGAGAAAATGAAAAGACTA 57.246 29.630 0.00 0.00 0.00 2.59
2266 2280 9.487790 GTTCAATATTGTGGGAGAAAATGAAAA 57.512 29.630 14.97 0.00 0.00 2.29
2301 2315 8.129840 AGTAAACGACTAGTATGTCATAAGCAG 58.870 37.037 0.00 0.00 36.27 4.24
2306 2320 9.224267 GGGATAGTAAACGACTAGTATGTCATA 57.776 37.037 0.00 0.00 43.99 2.15
2330 2344 6.202954 CGCTTTGATATTAGTTTACAGAGGGG 59.797 42.308 0.00 0.00 0.00 4.79
2331 2345 6.761714 ACGCTTTGATATTAGTTTACAGAGGG 59.238 38.462 0.00 0.00 34.01 4.30
2332 2346 7.772332 ACGCTTTGATATTAGTTTACAGAGG 57.228 36.000 0.00 0.00 0.00 3.69
2340 2354 9.601217 AGTGATCTAAACGCTTTGATATTAGTT 57.399 29.630 0.00 0.00 0.00 2.24
2345 2359 9.601217 ACTTTAGTGATCTAAACGCTTTGATAT 57.399 29.630 0.00 0.00 40.05 1.63
2346 2360 8.997621 ACTTTAGTGATCTAAACGCTTTGATA 57.002 30.769 0.00 0.00 40.05 2.15
2347 2361 7.907214 ACTTTAGTGATCTAAACGCTTTGAT 57.093 32.000 0.00 0.00 40.05 2.57
2348 2362 8.086522 AGTACTTTAGTGATCTAAACGCTTTGA 58.913 33.333 0.00 0.00 40.05 2.69
2349 2363 8.240883 AGTACTTTAGTGATCTAAACGCTTTG 57.759 34.615 0.00 0.00 40.05 2.77
2350 2364 9.570488 CTAGTACTTTAGTGATCTAAACGCTTT 57.430 33.333 0.00 0.00 40.05 3.51
2351 2365 8.738106 ACTAGTACTTTAGTGATCTAAACGCTT 58.262 33.333 0.00 0.00 40.05 4.68
2352 2366 8.278729 ACTAGTACTTTAGTGATCTAAACGCT 57.721 34.615 0.00 0.00 40.05 5.07
2353 2367 8.397148 AGACTAGTACTTTAGTGATCTAAACGC 58.603 37.037 0.00 0.00 40.05 4.84
2362 2376 9.790344 AGAGTGTTTAGACTAGTACTTTAGTGA 57.210 33.333 0.00 0.00 34.13 3.41
2380 2394 9.813446 CCTCGGTAAACTAATATAAGAGTGTTT 57.187 33.333 0.00 0.00 0.00 2.83
2381 2395 8.419442 CCCTCGGTAAACTAATATAAGAGTGTT 58.581 37.037 0.00 0.00 0.00 3.32
2382 2396 7.781693 TCCCTCGGTAAACTAATATAAGAGTGT 59.218 37.037 0.00 0.00 0.00 3.55
2383 2397 8.174733 TCCCTCGGTAAACTAATATAAGAGTG 57.825 38.462 0.00 0.00 0.00 3.51
2384 2398 8.003629 ACTCCCTCGGTAAACTAATATAAGAGT 58.996 37.037 0.00 0.00 0.00 3.24
2385 2399 8.406730 ACTCCCTCGGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
2386 2400 9.289782 GTACTCCCTCGGTAAACTAATATAAGA 57.710 37.037 0.00 0.00 0.00 2.10
2387 2401 9.294614 AGTACTCCCTCGGTAAACTAATATAAG 57.705 37.037 0.00 0.00 0.00 1.73
2390 2404 9.819754 AATAGTACTCCCTCGGTAAACTAATAT 57.180 33.333 0.00 0.00 0.00 1.28
2391 2405 9.646522 AAATAGTACTCCCTCGGTAAACTAATA 57.353 33.333 0.00 0.00 0.00 0.98
2392 2406 8.544687 AAATAGTACTCCCTCGGTAAACTAAT 57.455 34.615 0.00 0.00 0.00 1.73
2393 2407 7.961326 AAATAGTACTCCCTCGGTAAACTAA 57.039 36.000 0.00 0.00 0.00 2.24
2394 2408 7.961326 AAAATAGTACTCCCTCGGTAAACTA 57.039 36.000 0.00 0.00 0.00 2.24
2395 2409 6.864151 AAAATAGTACTCCCTCGGTAAACT 57.136 37.500 0.00 0.00 0.00 2.66
2396 2410 7.776107 AGTAAAATAGTACTCCCTCGGTAAAC 58.224 38.462 0.00 0.00 27.56 2.01
2397 2411 7.961326 AGTAAAATAGTACTCCCTCGGTAAA 57.039 36.000 0.00 0.00 27.56 2.01
2398 2412 7.397192 ACAAGTAAAATAGTACTCCCTCGGTAA 59.603 37.037 0.00 0.00 33.05 2.85
2399 2413 6.891908 ACAAGTAAAATAGTACTCCCTCGGTA 59.108 38.462 0.00 0.00 33.05 4.02
2400 2414 5.718607 ACAAGTAAAATAGTACTCCCTCGGT 59.281 40.000 0.00 0.00 33.05 4.69
2401 2415 6.218108 ACAAGTAAAATAGTACTCCCTCGG 57.782 41.667 0.00 0.00 33.05 4.63
2402 2416 7.430502 CGTAACAAGTAAAATAGTACTCCCTCG 59.569 40.741 0.00 0.00 33.05 4.63
2403 2417 8.462016 TCGTAACAAGTAAAATAGTACTCCCTC 58.538 37.037 0.00 0.00 33.05 4.30
2404 2418 8.353423 TCGTAACAAGTAAAATAGTACTCCCT 57.647 34.615 0.00 0.00 33.05 4.20
2405 2419 9.028185 CATCGTAACAAGTAAAATAGTACTCCC 57.972 37.037 0.00 0.00 33.05 4.30
2406 2420 9.793252 TCATCGTAACAAGTAAAATAGTACTCC 57.207 33.333 0.00 0.00 33.05 3.85
2415 2429 8.800031 GCTTTGTTTTCATCGTAACAAGTAAAA 58.200 29.630 0.00 0.00 42.98 1.52
2416 2430 7.968956 TGCTTTGTTTTCATCGTAACAAGTAAA 59.031 29.630 0.00 0.00 42.98 2.01
2417 2431 7.473366 TGCTTTGTTTTCATCGTAACAAGTAA 58.527 30.769 0.00 0.00 42.98 2.24
2418 2432 7.017498 TGCTTTGTTTTCATCGTAACAAGTA 57.983 32.000 0.00 0.00 42.98 2.24
2419 2433 5.885881 TGCTTTGTTTTCATCGTAACAAGT 58.114 33.333 0.00 0.00 42.98 3.16
2420 2434 6.614162 GCATGCTTTGTTTTCATCGTAACAAG 60.614 38.462 11.37 0.00 42.98 3.16
2421 2435 5.174761 GCATGCTTTGTTTTCATCGTAACAA 59.825 36.000 11.37 0.00 41.16 2.83
2422 2436 4.679197 GCATGCTTTGTTTTCATCGTAACA 59.321 37.500 11.37 0.00 32.76 2.41
2423 2437 4.917415 AGCATGCTTTGTTTTCATCGTAAC 59.083 37.500 16.30 0.00 0.00 2.50
2424 2438 5.119931 AGCATGCTTTGTTTTCATCGTAA 57.880 34.783 16.30 0.00 0.00 3.18
2425 2439 4.215185 TGAGCATGCTTTGTTTTCATCGTA 59.785 37.500 23.61 0.00 0.00 3.43
2426 2440 3.004629 TGAGCATGCTTTGTTTTCATCGT 59.995 39.130 23.61 0.00 0.00 3.73
2427 2441 3.567530 TGAGCATGCTTTGTTTTCATCG 58.432 40.909 23.61 0.00 0.00 3.84
2428 2442 5.854157 CATTGAGCATGCTTTGTTTTCATC 58.146 37.500 23.61 5.44 0.00 2.92
2429 2443 5.856126 CATTGAGCATGCTTTGTTTTCAT 57.144 34.783 23.61 2.65 0.00 2.57
2444 2458 4.158394 TGTTTTCTCCCATAAGCATTGAGC 59.842 41.667 0.00 0.00 46.19 4.26
2445 2459 5.902613 TGTTTTCTCCCATAAGCATTGAG 57.097 39.130 0.00 0.00 0.00 3.02
2446 2460 6.662865 TTTGTTTTCTCCCATAAGCATTGA 57.337 33.333 0.00 0.00 0.00 2.57
2447 2461 7.727331 TTTTTGTTTTCTCCCATAAGCATTG 57.273 32.000 0.00 0.00 0.00 2.82
2448 2462 7.391275 CCATTTTTGTTTTCTCCCATAAGCATT 59.609 33.333 0.00 0.00 0.00 3.56
2449 2463 6.880529 CCATTTTTGTTTTCTCCCATAAGCAT 59.119 34.615 0.00 0.00 0.00 3.79
2450 2464 6.183361 ACCATTTTTGTTTTCTCCCATAAGCA 60.183 34.615 0.00 0.00 0.00 3.91
2451 2465 6.230472 ACCATTTTTGTTTTCTCCCATAAGC 58.770 36.000 0.00 0.00 0.00 3.09
2452 2466 7.441017 TGACCATTTTTGTTTTCTCCCATAAG 58.559 34.615 0.00 0.00 0.00 1.73
2453 2467 7.366847 TGACCATTTTTGTTTTCTCCCATAA 57.633 32.000 0.00 0.00 0.00 1.90
2454 2468 6.985653 TGACCATTTTTGTTTTCTCCCATA 57.014 33.333 0.00 0.00 0.00 2.74
2455 2469 5.885449 TGACCATTTTTGTTTTCTCCCAT 57.115 34.783 0.00 0.00 0.00 4.00
2456 2470 5.188751 ACTTGACCATTTTTGTTTTCTCCCA 59.811 36.000 0.00 0.00 0.00 4.37
2457 2471 5.670485 ACTTGACCATTTTTGTTTTCTCCC 58.330 37.500 0.00 0.00 0.00 4.30
2458 2472 6.816140 TCAACTTGACCATTTTTGTTTTCTCC 59.184 34.615 0.00 0.00 0.00 3.71
2459 2473 7.826260 TCAACTTGACCATTTTTGTTTTCTC 57.174 32.000 0.00 0.00 0.00 2.87
2460 2474 8.667463 CATTCAACTTGACCATTTTTGTTTTCT 58.333 29.630 0.00 0.00 0.00 2.52
2461 2475 7.429051 GCATTCAACTTGACCATTTTTGTTTTC 59.571 33.333 0.00 0.00 0.00 2.29
2462 2476 7.121020 AGCATTCAACTTGACCATTTTTGTTTT 59.879 29.630 0.00 0.00 0.00 2.43
2463 2477 6.598850 AGCATTCAACTTGACCATTTTTGTTT 59.401 30.769 0.00 0.00 0.00 2.83
2464 2478 6.114767 AGCATTCAACTTGACCATTTTTGTT 58.885 32.000 0.00 0.00 0.00 2.83
2465 2479 5.673514 AGCATTCAACTTGACCATTTTTGT 58.326 33.333 0.00 0.00 0.00 2.83
2466 2480 7.439056 AGTTAGCATTCAACTTGACCATTTTTG 59.561 33.333 0.00 0.00 32.28 2.44
2467 2481 7.500141 AGTTAGCATTCAACTTGACCATTTTT 58.500 30.769 0.00 0.00 32.28 1.94
2468 2482 7.054491 AGTTAGCATTCAACTTGACCATTTT 57.946 32.000 0.00 0.00 32.28 1.82
2469 2483 6.655078 AGTTAGCATTCAACTTGACCATTT 57.345 33.333 0.00 0.00 32.28 2.32
2470 2484 6.655078 AAGTTAGCATTCAACTTGACCATT 57.345 33.333 0.00 0.00 42.98 3.16
2471 2485 6.449698 CAAAGTTAGCATTCAACTTGACCAT 58.550 36.000 1.54 0.00 43.62 3.55
2472 2486 5.221224 CCAAAGTTAGCATTCAACTTGACCA 60.221 40.000 1.54 0.00 43.62 4.02
2473 2487 5.009610 TCCAAAGTTAGCATTCAACTTGACC 59.990 40.000 1.54 0.00 43.62 4.02
2474 2488 6.072112 TCCAAAGTTAGCATTCAACTTGAC 57.928 37.500 1.54 0.00 43.62 3.18
2475 2489 6.096141 TGTTCCAAAGTTAGCATTCAACTTGA 59.904 34.615 1.54 0.00 43.62 3.02
2476 2490 6.272318 TGTTCCAAAGTTAGCATTCAACTTG 58.728 36.000 1.54 0.00 43.62 3.16
2477 2491 6.463995 TGTTCCAAAGTTAGCATTCAACTT 57.536 33.333 0.00 0.00 45.73 2.66
2478 2492 6.463995 TTGTTCCAAAGTTAGCATTCAACT 57.536 33.333 0.00 0.00 37.85 3.16
2479 2493 6.756542 ACTTTGTTCCAAAGTTAGCATTCAAC 59.243 34.615 14.80 0.00 37.18 3.18
2480 2494 6.872920 ACTTTGTTCCAAAGTTAGCATTCAA 58.127 32.000 14.80 0.00 37.18 2.69
2481 2495 6.463995 ACTTTGTTCCAAAGTTAGCATTCA 57.536 33.333 14.80 0.00 37.18 2.57
2482 2496 8.296713 TGATACTTTGTTCCAAAGTTAGCATTC 58.703 33.333 22.89 12.94 40.58 2.67
2483 2497 8.177119 TGATACTTTGTTCCAAAGTTAGCATT 57.823 30.769 22.89 4.01 40.58 3.56
2484 2498 7.759489 TGATACTTTGTTCCAAAGTTAGCAT 57.241 32.000 22.89 12.97 40.58 3.79
2485 2499 7.230510 ACATGATACTTTGTTCCAAAGTTAGCA 59.769 33.333 22.89 18.34 40.58 3.49
2486 2500 7.538678 CACATGATACTTTGTTCCAAAGTTAGC 59.461 37.037 22.89 14.61 40.58 3.09
2487 2501 8.955061 CACATGATACTTTGTTCCAAAGTTAG 57.045 34.615 22.89 13.07 40.58 2.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.