Multiple sequence alignment - TraesCS4D01G113400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G113400 chr4D 100.000 5242 0 0 891 6132 93848189 93842948 0.000000e+00 9681
1 TraesCS4D01G113400 chr4D 100.000 659 0 0 1 659 93849079 93848421 0.000000e+00 1218
2 TraesCS4D01G113400 chr4D 81.421 732 119 11 3514 4235 94260295 94259571 3.190000e-162 582
3 TraesCS4D01G113400 chr4D 81.116 699 91 31 910 1598 94262240 94261573 7.040000e-144 521
4 TraesCS4D01G113400 chr4D 82.609 322 34 10 2674 2984 94261240 94260930 1.310000e-66 265
5 TraesCS4D01G113400 chr4D 84.556 259 39 1 3198 3456 94260679 94260422 7.890000e-64 255
6 TraesCS4D01G113400 chr4B 95.025 2653 85 25 891 3507 132338527 132335886 0.000000e+00 4124
7 TraesCS4D01G113400 chr4B 92.493 1372 79 8 3534 4882 132335771 132334401 0.000000e+00 1941
8 TraesCS4D01G113400 chr4B 84.637 716 66 18 4987 5673 132334395 132333695 0.000000e+00 673
9 TraesCS4D01G113400 chr4B 80.959 730 121 12 3514 4234 132854636 132853916 4.150000e-156 562
10 TraesCS4D01G113400 chr4B 94.237 295 11 3 369 659 132338864 132338572 4.360000e-121 446
11 TraesCS4D01G113400 chr4B 97.368 228 5 1 1 228 132339392 132339166 2.680000e-103 387
12 TraesCS4D01G113400 chr4B 83.960 399 20 11 5743 6123 132333695 132333323 5.890000e-90 342
13 TraesCS4D01G113400 chr4B 79.905 423 53 17 2581 2984 132855682 132855273 1.300000e-71 281
14 TraesCS4D01G113400 chr4B 83.908 261 38 4 3198 3456 132855021 132854763 4.750000e-61 246
15 TraesCS4D01G113400 chr4B 92.857 154 7 1 227 376 132339043 132338890 2.880000e-53 220
16 TraesCS4D01G113400 chr4A 94.741 2434 87 16 2477 4882 487863661 487866081 0.000000e+00 3747
17 TraesCS4D01G113400 chr4A 96.048 1594 49 9 891 2478 487862039 487863624 0.000000e+00 2582
18 TraesCS4D01G113400 chr4A 89.897 1168 58 26 4987 6123 487866087 487867225 0.000000e+00 1448
19 TraesCS4D01G113400 chr4A 94.474 380 17 2 1 376 487861026 487861405 3.190000e-162 582
20 TraesCS4D01G113400 chr4A 81.344 729 118 11 3514 4231 486641632 486642353 1.480000e-160 577
21 TraesCS4D01G113400 chr4A 80.516 698 91 33 910 1595 486639789 486640453 1.540000e-135 494
22 TraesCS4D01G113400 chr4A 90.830 229 7 6 369 586 487861431 487861656 1.670000e-75 294
23 TraesCS4D01G113400 chr4A 77.255 510 80 22 2500 2984 486640481 486640979 3.640000e-67 267
24 TraesCS4D01G113400 chr4A 84.291 261 38 2 3198 3456 486641236 486641495 1.020000e-62 252
25 TraesCS4D01G113400 chr2B 82.159 667 94 17 3547 4201 511276313 511276966 3.230000e-152 549
26 TraesCS4D01G113400 chr2B 84.921 252 28 7 3160 3410 511275970 511276212 4.750000e-61 246
27 TraesCS4D01G113400 chr2D 81.859 667 103 14 3547 4201 433506432 433507092 4.180000e-151 545
28 TraesCS4D01G113400 chr2D 83.278 299 42 6 3115 3409 433505894 433506188 1.010000e-67 268
29 TraesCS4D01G113400 chr2A 81.848 303 42 10 3115 3409 553487489 553487192 6.140000e-60 243


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G113400 chr4D 93842948 93849079 6131 True 5449.500000 9681 100.000000 1 6132 2 chr4D.!!$R1 6131
1 TraesCS4D01G113400 chr4D 94259571 94262240 2669 True 405.750000 582 82.425500 910 4235 4 chr4D.!!$R2 3325
2 TraesCS4D01G113400 chr4B 132333323 132339392 6069 True 1161.857143 4124 91.511000 1 6123 7 chr4B.!!$R1 6122
3 TraesCS4D01G113400 chr4B 132853916 132855682 1766 True 363.000000 562 81.590667 2581 4234 3 chr4B.!!$R2 1653
4 TraesCS4D01G113400 chr4A 487861026 487867225 6199 False 1730.600000 3747 93.198000 1 6123 5 chr4A.!!$F2 6122
5 TraesCS4D01G113400 chr4A 486639789 486642353 2564 False 397.500000 577 80.851500 910 4231 4 chr4A.!!$F1 3321
6 TraesCS4D01G113400 chr2B 511275970 511276966 996 False 397.500000 549 83.540000 3160 4201 2 chr2B.!!$F1 1041
7 TraesCS4D01G113400 chr2D 433505894 433507092 1198 False 406.500000 545 82.568500 3115 4201 2 chr2D.!!$F1 1086

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
59 60 1.541588 CTTTAGGTCAAACAGCTGCCC 59.458 52.381 15.27 6.25 33.71 5.36 F
949 1204 2.693797 AAGTTTGCAAGCGATGACAG 57.306 45.000 7.70 0.00 0.00 3.51 F
1647 1913 1.317613 GCCATGGTTTGTCACACTCA 58.682 50.000 14.67 0.00 0.00 3.41 F
2905 3369 0.110509 GTTGTCAGACAGCATGCACG 60.111 55.000 21.98 13.14 42.53 5.34 F
4808 5795 0.458669 GCGGATAGTCCAGACCGAAA 59.541 55.000 0.00 0.00 46.94 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1597 1863 0.616679 CCCAACTAAGGAGACCCCGA 60.617 60.000 0.00 0.0 40.87 5.14 R
2471 2738 1.001641 CTGGGGTCAAGGGCTTCTG 60.002 63.158 0.00 0.0 0.00 3.02 R
3429 4044 1.003812 TGTGGGGAAACAAGGATACCG 59.996 52.381 0.00 0.0 37.17 4.02 R
4828 5815 0.107703 TAGTCGGGCCTTCATTGCTG 60.108 55.000 0.84 0.0 0.00 4.41 R
5845 6865 0.037232 CGTCGCCTTCCTCCTTTTCT 60.037 55.000 0.00 0.0 0.00 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 1.612676 GGGTTAGTTTCTTGCCGGTT 58.387 50.000 1.90 0.00 0.00 4.44
59 60 1.541588 CTTTAGGTCAAACAGCTGCCC 59.458 52.381 15.27 6.25 33.71 5.36
117 118 6.573664 TTCATTCTGCTAGCTTTGCTAAAA 57.426 33.333 17.23 0.00 40.82 1.52
253 378 3.483808 TTGTGCAGTGGTCATTACTCA 57.516 42.857 0.00 0.00 0.00 3.41
293 418 6.545666 ACAATTTCATTAATGTCGCCATCCTA 59.454 34.615 14.97 0.00 0.00 2.94
294 419 7.068103 ACAATTTCATTAATGTCGCCATCCTAA 59.932 33.333 14.97 0.00 0.00 2.69
295 420 6.371809 TTTCATTAATGTCGCCATCCTAAC 57.628 37.500 14.97 0.00 0.00 2.34
296 421 4.055360 TCATTAATGTCGCCATCCTAACG 58.945 43.478 14.97 0.00 0.00 3.18
297 422 3.530265 TTAATGTCGCCATCCTAACGT 57.470 42.857 0.00 0.00 0.00 3.99
316 445 5.643379 ACGTAGGAAATGCATTGATGTTT 57.357 34.783 13.82 0.00 0.00 2.83
416 578 5.185828 GCCCTTTTTATGTTCCACTGAAGAT 59.814 40.000 0.00 0.00 38.05 2.40
474 636 4.507710 TGACATCTTTCTTAGCGCTTCAT 58.492 39.130 18.68 0.00 0.00 2.57
487 649 4.445453 AGCGCTTCATGACTTCATCAATA 58.555 39.130 2.64 0.00 41.93 1.90
491 653 6.794158 GCGCTTCATGACTTCATCAATATTAC 59.206 38.462 0.00 0.00 41.93 1.89
550 727 5.224821 AGTTGTACCTTCCTCCTGTTTAC 57.775 43.478 0.00 0.00 0.00 2.01
605 782 9.917129 GGGCAAATAAAAGTTACTAAAGCTTAA 57.083 29.630 0.00 0.00 0.00 1.85
649 826 7.958674 TGTTTGTTGTTTTGCACTTAGATTTC 58.041 30.769 0.00 0.00 0.00 2.17
949 1204 2.693797 AAGTTTGCAAGCGATGACAG 57.306 45.000 7.70 0.00 0.00 3.51
966 1224 7.691463 GCGATGACAGAATATATCTCATTTTGC 59.309 37.037 0.00 0.00 35.73 3.68
972 1230 7.446625 ACAGAATATATCTCATTTTGCCAGGTC 59.553 37.037 0.00 0.00 35.73 3.85
1346 1605 8.621286 TGAATCTTACCTGTTCTTTTCAAGTTC 58.379 33.333 0.00 0.00 0.00 3.01
1425 1688 7.731882 TTCTTGTTTCACCGTCAACAATATA 57.268 32.000 6.15 0.00 41.04 0.86
1427 1690 8.330466 TCTTGTTTCACCGTCAACAATATATT 57.670 30.769 6.15 0.00 41.04 1.28
1428 1691 8.233868 TCTTGTTTCACCGTCAACAATATATTG 58.766 33.333 21.42 21.42 41.04 1.90
1429 1692 7.674471 TGTTTCACCGTCAACAATATATTGA 57.326 32.000 28.13 7.72 40.14 2.57
1430 1693 8.100508 TGTTTCACCGTCAACAATATATTGAA 57.899 30.769 28.13 12.56 40.14 2.69
1431 1694 8.568794 TGTTTCACCGTCAACAATATATTGAAA 58.431 29.630 28.13 13.88 40.14 2.69
1515 1780 8.387354 TGCACATCTAAAACATAAGTGATTACG 58.613 33.333 0.00 0.00 0.00 3.18
1597 1863 6.299805 TGCACCTCTAACAGACAGAATATT 57.700 37.500 0.00 0.00 0.00 1.28
1647 1913 1.317613 GCCATGGTTTGTCACACTCA 58.682 50.000 14.67 0.00 0.00 3.41
1706 1972 1.680735 TCAAAGCCACGTTTTCTGCAT 59.319 42.857 0.00 0.00 0.00 3.96
1715 1981 2.224018 ACGTTTTCTGCATGCCAAACAT 60.224 40.909 25.12 15.03 40.66 2.71
1792 2059 4.344102 TGTAGACAAGCTAAGTTGTGGACT 59.656 41.667 0.00 0.00 40.83 3.85
1832 2099 2.623416 ACCAGCTGAGTTAGGCAAAAAC 59.377 45.455 17.39 0.00 0.00 2.43
1844 2111 2.785713 GCAAAAACGCCTTTAGTGGA 57.214 45.000 0.00 0.00 0.00 4.02
1847 2114 4.055360 GCAAAAACGCCTTTAGTGGAATT 58.945 39.130 0.00 0.00 0.00 2.17
1848 2115 5.224135 GCAAAAACGCCTTTAGTGGAATTA 58.776 37.500 0.00 0.00 0.00 1.40
1849 2116 5.867174 GCAAAAACGCCTTTAGTGGAATTAT 59.133 36.000 0.00 0.00 0.00 1.28
1850 2117 6.367695 GCAAAAACGCCTTTAGTGGAATTATT 59.632 34.615 0.00 0.00 0.00 1.40
1851 2118 7.621219 GCAAAAACGCCTTTAGTGGAATTATTG 60.621 37.037 0.00 0.00 0.00 1.90
1852 2119 6.827586 AAACGCCTTTAGTGGAATTATTGA 57.172 33.333 0.00 0.00 0.00 2.57
1859 2126 9.561069 GCCTTTAGTGGAATTATTGATCTTAGA 57.439 33.333 0.00 0.00 0.00 2.10
1929 2196 2.217750 TGAAACAAGCACTGTACGCAT 58.782 42.857 0.00 0.00 37.23 4.73
2285 2552 5.954150 ACATTGATTTTCAGCCTACTCCATT 59.046 36.000 0.00 0.00 0.00 3.16
2490 2797 2.234296 AGAAGCCCTTGACCCCAGG 61.234 63.158 0.00 0.00 0.00 4.45
2491 2798 2.121506 AAGCCCTTGACCCCAGGA 60.122 61.111 0.00 0.00 0.00 3.86
2562 2875 0.179037 AGCGATGGGTGATCACATGG 60.179 55.000 26.47 14.59 37.87 3.66
2594 2911 5.845985 TTAGCGACAACAGAAAAGATCAG 57.154 39.130 0.00 0.00 0.00 2.90
2631 2950 9.483916 GTATTTTTGTTTAGGCCTTTATGTGTT 57.516 29.630 12.58 0.00 0.00 3.32
2669 2995 7.092716 GCACCATGAAAGTTTATGAATCAGTT 58.907 34.615 0.00 0.00 0.00 3.16
2905 3369 0.110509 GTTGTCAGACAGCATGCACG 60.111 55.000 21.98 13.14 42.53 5.34
3139 3746 5.804692 TTTTTGTGTGTGTAGTGTACAGG 57.195 39.130 0.00 0.00 39.77 4.00
3429 4044 6.430000 TGATACTCCTTTTCTTAGTTGCCAAC 59.570 38.462 0.00 0.00 0.00 3.77
3510 4223 5.829924 AGTCGATGCATTTTATTCCCTGATT 59.170 36.000 0.00 0.00 0.00 2.57
3511 4224 6.998074 AGTCGATGCATTTTATTCCCTGATTA 59.002 34.615 0.00 0.00 0.00 1.75
3512 4225 7.173907 AGTCGATGCATTTTATTCCCTGATTAG 59.826 37.037 0.00 0.00 0.00 1.73
3513 4226 6.998074 TCGATGCATTTTATTCCCTGATTAGT 59.002 34.615 0.00 0.00 0.00 2.24
3514 4227 7.041167 TCGATGCATTTTATTCCCTGATTAGTG 60.041 37.037 0.00 0.00 0.00 2.74
3515 4228 7.041167 CGATGCATTTTATTCCCTGATTAGTGA 60.041 37.037 0.00 0.00 0.00 3.41
3516 4229 8.716674 ATGCATTTTATTCCCTGATTAGTGAT 57.283 30.769 0.00 0.00 0.00 3.06
3526 4239 5.128827 TCCCTGATTAGTGATTACTGTGACC 59.871 44.000 0.00 0.00 37.78 4.02
3651 4591 6.693466 TGATTTTGACTTCAATGTGCATCAT 58.307 32.000 0.00 0.00 38.57 2.45
3808 4748 4.300803 TGTTATGCCTATTTACTACGCCG 58.699 43.478 0.00 0.00 0.00 6.46
4043 4989 7.269316 TGCAGTATTCATTGTCGTAAGGATAA 58.731 34.615 0.00 0.00 38.47 1.75
4238 5202 1.899814 CTAGTGTTCTGGGCTACACCA 59.100 52.381 0.00 0.00 44.38 4.17
4254 5218 4.301072 ACACCATACACTAGGCAATGTT 57.699 40.909 0.00 0.00 0.00 2.71
4338 5302 0.658897 GGTTGGCGTCGACTTTTGAA 59.341 50.000 14.70 0.00 0.00 2.69
4363 5329 8.954950 ATTCAACTATTGATAGACCTTGTCTG 57.045 34.615 7.00 0.00 39.41 3.51
4463 5435 6.515272 CTGGTAAGCAGTATTGTCCATTTT 57.485 37.500 0.00 0.00 0.00 1.82
4513 5485 2.498905 CACGTTCACATTTGATGCTCG 58.501 47.619 0.00 0.00 0.00 5.03
4517 5489 3.492313 GTTCACATTTGATGCTCGTTCC 58.508 45.455 0.00 0.00 0.00 3.62
4534 5506 4.628333 TCGTTCCTGCGAAAGTATAAAAGG 59.372 41.667 0.00 0.00 37.99 3.11
4537 5509 4.523083 TCCTGCGAAAGTATAAAAGGCAT 58.477 39.130 0.00 0.00 0.00 4.40
4558 5530 3.629142 ACTAAGGACCCATGCTTACAC 57.371 47.619 0.00 0.00 37.68 2.90
4561 5533 3.629142 AAGGACCCATGCTTACACTAC 57.371 47.619 0.00 0.00 34.19 2.73
4634 5606 2.509548 CCACCACCATCTCAAGGGAATA 59.490 50.000 0.00 0.00 0.00 1.75
4675 5647 4.380233 GCAAGTTTAGCTGATCAACATGCT 60.380 41.667 14.36 13.02 40.35 3.79
4676 5648 4.959596 AGTTTAGCTGATCAACATGCTG 57.040 40.909 15.41 0.00 35.68 4.41
4677 5649 3.128242 AGTTTAGCTGATCAACATGCTGC 59.872 43.478 15.41 5.25 35.68 5.25
4681 5653 1.089112 CTGATCAACATGCTGCGGAA 58.911 50.000 0.00 0.00 0.00 4.30
4711 5683 4.087892 GCTGCCGAAGAGCCTCCA 62.088 66.667 0.00 0.00 0.00 3.86
4723 5695 2.017752 GCCTCCAGCGCATAAGAAC 58.982 57.895 11.47 0.00 0.00 3.01
4727 5699 1.869767 CTCCAGCGCATAAGAACCATC 59.130 52.381 11.47 0.00 0.00 3.51
4742 5714 1.567649 ACCATCCAGCATCCAGACAAT 59.432 47.619 0.00 0.00 0.00 2.71
4759 5746 0.674895 AATCGAGCTTGCCAGACCAC 60.675 55.000 0.00 0.00 0.00 4.16
4763 5750 1.001641 AGCTTGCCAGACCACCATC 60.002 57.895 0.00 0.00 0.00 3.51
4790 5777 2.602257 AAGGCAAAACTCAAACCAGC 57.398 45.000 0.00 0.00 0.00 4.85
4797 5784 3.418684 AAACTCAAACCAGCGGATAGT 57.581 42.857 1.50 0.00 0.00 2.12
4798 5785 2.674796 ACTCAAACCAGCGGATAGTC 57.325 50.000 1.50 0.00 0.00 2.59
4801 5788 1.207089 TCAAACCAGCGGATAGTCCAG 59.793 52.381 1.50 0.00 35.91 3.86
4808 5795 0.458669 GCGGATAGTCCAGACCGAAA 59.541 55.000 0.00 0.00 46.94 3.46
4810 5797 1.475280 CGGATAGTCCAGACCGAAACA 59.525 52.381 0.00 0.00 46.94 2.83
4842 5829 2.353610 CCACCAGCAATGAAGGCCC 61.354 63.158 0.00 0.00 0.00 5.80
4843 5830 2.361610 ACCAGCAATGAAGGCCCG 60.362 61.111 0.00 0.00 0.00 6.13
4845 5832 2.409870 CCAGCAATGAAGGCCCGAC 61.410 63.158 0.00 0.00 0.00 4.79
4848 5835 0.839946 AGCAATGAAGGCCCGACTAT 59.160 50.000 0.00 0.00 0.00 2.12
4850 5837 0.947244 CAATGAAGGCCCGACTATGC 59.053 55.000 0.00 0.00 0.00 3.14
4860 5847 2.279517 GACTATGCCGCCGTCAGG 60.280 66.667 0.00 0.00 41.62 3.86
4882 5869 3.703052 GGATGGATGCAGTGGAAAAGATT 59.297 43.478 0.00 0.00 0.00 2.40
4883 5870 4.441079 GGATGGATGCAGTGGAAAAGATTG 60.441 45.833 0.00 0.00 0.00 2.67
4884 5871 2.231964 TGGATGCAGTGGAAAAGATTGC 59.768 45.455 0.00 0.00 35.42 3.56
4885 5872 2.494870 GGATGCAGTGGAAAAGATTGCT 59.505 45.455 0.00 0.00 35.85 3.91
4886 5873 3.508762 GATGCAGTGGAAAAGATTGCTG 58.491 45.455 0.00 0.00 35.85 4.41
4887 5874 2.585330 TGCAGTGGAAAAGATTGCTGA 58.415 42.857 0.00 0.00 35.85 4.26
4888 5875 3.159472 TGCAGTGGAAAAGATTGCTGAT 58.841 40.909 0.00 0.00 35.85 2.90
4889 5876 3.192001 TGCAGTGGAAAAGATTGCTGATC 59.808 43.478 0.00 0.00 35.85 2.92
4891 5878 4.674623 GCAGTGGAAAAGATTGCTGATCTG 60.675 45.833 4.29 0.00 44.41 2.90
4892 5879 4.458295 CAGTGGAAAAGATTGCTGATCTGT 59.542 41.667 4.29 0.00 44.41 3.41
4893 5880 4.699257 AGTGGAAAAGATTGCTGATCTGTC 59.301 41.667 4.29 5.46 44.41 3.51
4894 5881 4.699257 GTGGAAAAGATTGCTGATCTGTCT 59.301 41.667 4.29 0.00 44.41 3.41
4895 5882 4.698780 TGGAAAAGATTGCTGATCTGTCTG 59.301 41.667 4.29 0.00 44.41 3.51
4896 5883 4.940046 GGAAAAGATTGCTGATCTGTCTGA 59.060 41.667 4.29 0.00 44.41 3.27
4897 5884 5.064962 GGAAAAGATTGCTGATCTGTCTGAG 59.935 44.000 4.29 0.00 44.41 3.35
4898 5885 5.417754 AAAGATTGCTGATCTGTCTGAGA 57.582 39.130 4.29 0.00 44.41 3.27
4899 5886 4.659111 AGATTGCTGATCTGTCTGAGAG 57.341 45.455 1.27 0.00 43.52 3.20
4900 5887 3.385433 AGATTGCTGATCTGTCTGAGAGG 59.615 47.826 1.65 0.00 43.52 3.69
4901 5888 1.482954 TGCTGATCTGTCTGAGAGGG 58.517 55.000 1.65 0.00 32.80 4.30
4902 5889 1.006400 TGCTGATCTGTCTGAGAGGGA 59.994 52.381 1.65 0.00 32.80 4.20
4903 5890 1.682854 GCTGATCTGTCTGAGAGGGAG 59.317 57.143 1.65 0.00 32.80 4.30
4904 5891 1.682854 CTGATCTGTCTGAGAGGGAGC 59.317 57.143 1.65 0.00 32.80 4.70
4905 5892 1.287442 TGATCTGTCTGAGAGGGAGCT 59.713 52.381 1.65 0.00 32.80 4.09
4906 5893 1.682854 GATCTGTCTGAGAGGGAGCTG 59.317 57.143 0.00 0.00 32.80 4.24
4907 5894 0.701147 TCTGTCTGAGAGGGAGCTGA 59.299 55.000 0.00 0.00 0.00 4.26
4908 5895 1.076187 TCTGTCTGAGAGGGAGCTGAA 59.924 52.381 0.00 0.00 0.00 3.02
4909 5896 1.477700 CTGTCTGAGAGGGAGCTGAAG 59.522 57.143 0.00 0.00 0.00 3.02
4910 5897 0.175531 GTCTGAGAGGGAGCTGAAGC 59.824 60.000 0.00 0.00 42.49 3.86
4911 5898 0.251967 TCTGAGAGGGAGCTGAAGCA 60.252 55.000 4.90 0.00 45.16 3.91
4912 5899 0.831966 CTGAGAGGGAGCTGAAGCAT 59.168 55.000 4.90 0.00 45.16 3.79
4913 5900 0.540454 TGAGAGGGAGCTGAAGCATG 59.460 55.000 4.90 0.00 45.16 4.06
4914 5901 0.179051 GAGAGGGAGCTGAAGCATGG 60.179 60.000 4.90 0.00 45.16 3.66
4915 5902 0.619832 AGAGGGAGCTGAAGCATGGA 60.620 55.000 4.90 0.00 45.16 3.41
4916 5903 0.179051 GAGGGAGCTGAAGCATGGAG 60.179 60.000 4.90 0.00 45.16 3.86
4917 5904 0.913451 AGGGAGCTGAAGCATGGAGT 60.913 55.000 4.90 0.00 45.16 3.85
4918 5905 0.747283 GGGAGCTGAAGCATGGAGTG 60.747 60.000 4.90 0.00 45.16 3.51
4919 5906 0.747283 GGAGCTGAAGCATGGAGTGG 60.747 60.000 4.90 0.00 45.16 4.00
4920 5907 0.251354 GAGCTGAAGCATGGAGTGGA 59.749 55.000 4.90 0.00 45.16 4.02
4921 5908 0.694771 AGCTGAAGCATGGAGTGGAA 59.305 50.000 4.90 0.00 45.16 3.53
4922 5909 1.284198 AGCTGAAGCATGGAGTGGAAT 59.716 47.619 4.90 0.00 45.16 3.01
4923 5910 2.097825 GCTGAAGCATGGAGTGGAATT 58.902 47.619 0.00 0.00 41.59 2.17
4924 5911 2.159282 GCTGAAGCATGGAGTGGAATTG 60.159 50.000 0.00 0.00 41.59 2.32
4925 5912 2.426024 CTGAAGCATGGAGTGGAATTGG 59.574 50.000 0.00 0.00 0.00 3.16
4926 5913 2.225091 TGAAGCATGGAGTGGAATTGGT 60.225 45.455 0.00 0.00 0.00 3.67
4927 5914 2.610438 AGCATGGAGTGGAATTGGTT 57.390 45.000 0.00 0.00 0.00 3.67
4928 5915 2.173519 AGCATGGAGTGGAATTGGTTG 58.826 47.619 0.00 0.00 0.00 3.77
4929 5916 1.404583 GCATGGAGTGGAATTGGTTGC 60.405 52.381 0.00 0.00 0.00 4.17
4930 5917 1.205417 CATGGAGTGGAATTGGTTGCC 59.795 52.381 0.00 0.00 0.00 4.52
4931 5918 0.893270 TGGAGTGGAATTGGTTGCCG 60.893 55.000 0.00 0.00 0.00 5.69
4932 5919 0.608035 GGAGTGGAATTGGTTGCCGA 60.608 55.000 0.00 0.00 0.00 5.54
4933 5920 0.804989 GAGTGGAATTGGTTGCCGAG 59.195 55.000 0.00 0.00 0.00 4.63
4934 5921 0.609131 AGTGGAATTGGTTGCCGAGG 60.609 55.000 0.00 0.00 0.00 4.63
4935 5922 0.608035 GTGGAATTGGTTGCCGAGGA 60.608 55.000 0.00 0.00 0.00 3.71
4936 5923 0.331278 TGGAATTGGTTGCCGAGGAT 59.669 50.000 0.00 0.00 0.00 3.24
4937 5924 0.740737 GGAATTGGTTGCCGAGGATG 59.259 55.000 0.00 0.00 0.00 3.51
4938 5925 1.681780 GGAATTGGTTGCCGAGGATGA 60.682 52.381 0.00 0.00 0.00 2.92
4939 5926 1.401905 GAATTGGTTGCCGAGGATGAC 59.598 52.381 0.00 0.00 0.00 3.06
4940 5927 0.744414 ATTGGTTGCCGAGGATGACG 60.744 55.000 0.00 0.00 0.00 4.35
4941 5928 1.822114 TTGGTTGCCGAGGATGACGA 61.822 55.000 0.00 0.00 0.00 4.20
4942 5929 1.079405 GGTTGCCGAGGATGACGAA 60.079 57.895 0.00 0.00 0.00 3.85
4943 5930 0.672401 GGTTGCCGAGGATGACGAAA 60.672 55.000 0.00 0.00 0.00 3.46
4944 5931 1.153353 GTTGCCGAGGATGACGAAAA 58.847 50.000 0.00 0.00 0.00 2.29
4945 5932 1.533731 GTTGCCGAGGATGACGAAAAA 59.466 47.619 0.00 0.00 0.00 1.94
4946 5933 1.153353 TGCCGAGGATGACGAAAAAC 58.847 50.000 0.00 0.00 0.00 2.43
4947 5934 1.153353 GCCGAGGATGACGAAAAACA 58.847 50.000 0.00 0.00 0.00 2.83
4948 5935 1.136057 GCCGAGGATGACGAAAAACAC 60.136 52.381 0.00 0.00 0.00 3.32
4949 5936 1.126113 CCGAGGATGACGAAAAACACG 59.874 52.381 0.00 0.00 0.00 4.49
4950 5937 2.055838 CGAGGATGACGAAAAACACGA 58.944 47.619 0.00 0.00 34.70 4.35
4951 5938 2.160013 CGAGGATGACGAAAAACACGAC 60.160 50.000 0.00 0.00 34.70 4.34
4952 5939 2.798283 GAGGATGACGAAAAACACGACA 59.202 45.455 0.00 0.00 39.20 4.35
4953 5940 2.800544 AGGATGACGAAAAACACGACAG 59.199 45.455 0.00 0.00 38.48 3.51
4954 5941 2.798283 GGATGACGAAAAACACGACAGA 59.202 45.455 0.00 0.00 38.48 3.41
4955 5942 3.246699 GGATGACGAAAAACACGACAGAA 59.753 43.478 0.00 0.00 38.48 3.02
4956 5943 3.918258 TGACGAAAAACACGACAGAAG 57.082 42.857 0.00 0.00 32.82 2.85
4957 5944 2.605818 TGACGAAAAACACGACAGAAGG 59.394 45.455 0.00 0.00 32.82 3.46
4958 5945 1.329599 ACGAAAAACACGACAGAAGGC 59.670 47.619 0.00 0.00 34.70 4.35
4959 5946 1.329292 CGAAAAACACGACAGAAGGCA 59.671 47.619 0.00 0.00 0.00 4.75
4960 5947 2.599848 CGAAAAACACGACAGAAGGCAG 60.600 50.000 0.00 0.00 0.00 4.85
4961 5948 2.325583 AAAACACGACAGAAGGCAGA 57.674 45.000 0.00 0.00 0.00 4.26
4962 5949 1.583054 AAACACGACAGAAGGCAGAC 58.417 50.000 0.00 0.00 0.00 3.51
4963 5950 0.249911 AACACGACAGAAGGCAGACC 60.250 55.000 0.00 0.00 0.00 3.85
4964 5951 1.734477 CACGACAGAAGGCAGACCG 60.734 63.158 0.00 0.00 42.76 4.79
4965 5952 2.201022 ACGACAGAAGGCAGACCGT 61.201 57.895 0.00 0.00 42.76 4.83
4966 5953 1.444553 CGACAGAAGGCAGACCGTC 60.445 63.158 0.00 0.00 44.11 4.79
4967 5954 1.079750 GACAGAAGGCAGACCGTCC 60.080 63.158 0.00 0.00 44.79 4.79
4968 5955 2.266055 CAGAAGGCAGACCGTCCC 59.734 66.667 0.00 0.00 44.79 4.46
4969 5956 3.003763 AGAAGGCAGACCGTCCCC 61.004 66.667 0.00 0.00 44.79 4.81
4970 5957 4.097361 GAAGGCAGACCGTCCCCC 62.097 72.222 0.00 0.00 42.76 5.40
4999 5986 3.429960 CGCACAGAGAGGATCATCAGAAA 60.430 47.826 10.44 0.00 37.82 2.52
5001 5988 4.121317 CACAGAGAGGATCATCAGAAAGC 58.879 47.826 10.44 0.00 37.82 3.51
5012 5999 1.664649 CAGAAAGCCGCTCACACGA 60.665 57.895 0.00 0.00 34.06 4.35
5019 6006 2.126307 CGCTCACACGACAGAGGG 60.126 66.667 0.00 0.00 38.25 4.30
5023 6010 2.734723 CACACGACAGAGGGCACG 60.735 66.667 0.00 0.00 0.00 5.34
5026 6013 2.915659 ACGACAGAGGGCACGGAA 60.916 61.111 0.00 0.00 0.00 4.30
5037 6024 4.821589 CACGGAAGAGGGCGAGCC 62.822 72.222 5.37 5.37 0.00 4.70
5044 6031 2.413765 GAGGGCGAGCCGTCTAAG 59.586 66.667 24.49 0.00 44.82 2.18
5045 6032 3.140225 GAGGGCGAGCCGTCTAAGG 62.140 68.421 24.49 0.00 44.82 2.69
5046 6033 3.145551 GGGCGAGCCGTCTAAGGA 61.146 66.667 8.14 0.00 36.85 3.36
5047 6034 2.104530 GGCGAGCCGTCTAAGGAC 59.895 66.667 0.00 0.00 38.97 3.85
5048 6035 2.707849 GGCGAGCCGTCTAAGGACA 61.708 63.158 0.00 0.00 42.21 4.02
5049 6036 1.226717 GCGAGCCGTCTAAGGACAG 60.227 63.158 0.00 0.00 42.21 3.51
5050 6037 1.935327 GCGAGCCGTCTAAGGACAGT 61.935 60.000 0.00 0.00 42.21 3.55
5051 6038 0.099082 CGAGCCGTCTAAGGACAGTC 59.901 60.000 0.00 0.00 42.21 3.51
5053 6040 1.544691 GAGCCGTCTAAGGACAGTCAA 59.455 52.381 2.17 0.00 42.21 3.18
5054 6041 1.546476 AGCCGTCTAAGGACAGTCAAG 59.454 52.381 2.17 0.00 42.21 3.02
5055 6042 1.544691 GCCGTCTAAGGACAGTCAAGA 59.455 52.381 2.17 0.00 42.21 3.02
5056 6043 2.416162 GCCGTCTAAGGACAGTCAAGAG 60.416 54.545 2.17 0.00 42.21 2.85
5057 6044 2.820787 CCGTCTAAGGACAGTCAAGAGT 59.179 50.000 2.17 0.00 42.21 3.24
5060 6047 2.563179 TCTAAGGACAGTCAAGAGTGCC 59.437 50.000 2.17 7.35 35.19 5.01
5063 6050 1.701847 AGGACAGTCAAGAGTGCCATT 59.298 47.619 15.70 0.00 35.19 3.16
5142 6129 5.299531 GGTTGAGGCCATAAAAGGAAGTATC 59.700 44.000 5.01 0.00 0.00 2.24
5143 6130 5.708736 TGAGGCCATAAAAGGAAGTATCA 57.291 39.130 5.01 0.00 0.00 2.15
5144 6131 6.266131 TGAGGCCATAAAAGGAAGTATCAT 57.734 37.500 5.01 0.00 0.00 2.45
5145 6132 6.299141 TGAGGCCATAAAAGGAAGTATCATC 58.701 40.000 5.01 0.00 0.00 2.92
5147 6134 6.064717 AGGCCATAAAAGGAAGTATCATCAC 58.935 40.000 5.01 0.00 0.00 3.06
5149 6136 5.827797 GCCATAAAAGGAAGTATCATCACCA 59.172 40.000 0.00 0.00 0.00 4.17
5166 6155 2.938956 CCACCTGGGTAGAATGATCC 57.061 55.000 0.00 0.00 0.00 3.36
5169 6158 0.319900 CCTGGGTAGAATGATCCGCG 60.320 60.000 0.00 0.00 0.00 6.46
5179 6170 2.824041 GATCCGCGGTGGCATTGT 60.824 61.111 27.15 1.90 39.92 2.71
5211 6206 5.175388 ACTACCAGGGTGAAAACCTATTC 57.825 43.478 0.06 0.00 36.32 1.75
5333 6332 2.309693 GTGCATGTTCGTGTGTTGATG 58.690 47.619 0.00 0.00 0.00 3.07
5345 6344 2.116366 GTGTTGATGTTGTGGAAACGC 58.884 47.619 0.00 0.00 42.66 4.84
5396 6395 3.942829 TGCAGACCTGAGAAACATTAGG 58.057 45.455 0.47 0.00 36.39 2.69
5397 6396 3.327757 TGCAGACCTGAGAAACATTAGGT 59.672 43.478 0.47 0.00 45.77 3.08
5446 6445 0.179043 TGCTCCGTTGTTTGGTGCTA 60.179 50.000 7.47 0.00 44.30 3.49
5560 6580 1.266175 ACTCGTAACTGTGTCGGTGAG 59.734 52.381 5.37 0.00 0.00 3.51
5580 6600 1.027357 GACGGATGCATGCCAGAAAT 58.973 50.000 16.68 0.26 0.00 2.17
5609 6629 1.660560 CCATGAAAAGAGCTGGCGGG 61.661 60.000 0.00 0.00 0.00 6.13
5618 6638 2.244117 GAGCTGGCGGGTCATCAAGA 62.244 60.000 20.10 0.00 41.62 3.02
5619 6639 1.377202 GCTGGCGGGTCATCAAGAA 60.377 57.895 0.00 0.00 0.00 2.52
5620 6640 0.960364 GCTGGCGGGTCATCAAGAAA 60.960 55.000 0.00 0.00 0.00 2.52
5621 6641 1.533625 CTGGCGGGTCATCAAGAAAA 58.466 50.000 0.00 0.00 0.00 2.29
5622 6642 1.200020 CTGGCGGGTCATCAAGAAAAC 59.800 52.381 0.00 0.00 0.00 2.43
5623 6643 1.243902 GGCGGGTCATCAAGAAAACA 58.756 50.000 0.00 0.00 0.00 2.83
5624 6644 1.611491 GGCGGGTCATCAAGAAAACAA 59.389 47.619 0.00 0.00 0.00 2.83
5625 6645 2.351738 GGCGGGTCATCAAGAAAACAAG 60.352 50.000 0.00 0.00 0.00 3.16
5639 6659 5.684704 AGAAAACAAGATCACAGGAGAACA 58.315 37.500 0.00 0.00 0.00 3.18
5683 6703 7.061557 GGCCGTCGTTTTATCTATAATAGACAC 59.938 40.741 0.00 0.00 37.69 3.67
5714 6734 0.605319 ACGAGAAGCAATTTCCCGCA 60.605 50.000 0.00 0.00 40.27 5.69
5722 6742 1.228862 AATTTCCCGCAACTGGCCT 60.229 52.632 3.32 0.00 40.31 5.19
5845 6865 2.029964 AAAGAAACCGCCGCGAGA 59.970 55.556 15.93 0.00 0.00 4.04
5868 6889 0.460311 AAGGAGGAAGGCGACGTATG 59.540 55.000 0.00 0.00 0.00 2.39
5920 6941 3.019564 CCTAATCCTGCACCTCCTTTTG 58.980 50.000 0.00 0.00 0.00 2.44
5922 6943 0.962356 ATCCTGCACCTCCTTTTGCG 60.962 55.000 0.00 0.00 41.96 4.85
5932 6953 2.680913 CCTTTTGCGCACCCTCTCG 61.681 63.158 11.12 0.00 0.00 4.04
6095 7136 2.507110 ATTCGTGCAGGAGGACACCG 62.507 60.000 9.34 0.00 35.57 4.94
6125 7166 9.106286 CAACTGCTAATAATGCATTAACATACG 57.894 33.333 22.37 12.35 39.86 3.06
6126 7167 7.298122 ACTGCTAATAATGCATTAACATACGC 58.702 34.615 22.37 17.39 39.86 4.42
6127 7168 7.041440 ACTGCTAATAATGCATTAACATACGCA 60.041 33.333 22.37 20.19 39.86 5.24
6128 7169 7.815641 TGCTAATAATGCATTAACATACGCAT 58.184 30.769 22.37 1.56 46.66 4.73
6129 7170 7.962373 TGCTAATAATGCATTAACATACGCATC 59.038 33.333 22.37 5.40 44.03 3.91
6130 7171 7.162546 GCTAATAATGCATTAACATACGCATCG 59.837 37.037 22.37 5.72 44.03 3.84
6131 7172 4.811555 AATGCATTAACATACGCATCGT 57.188 36.364 11.02 0.00 44.03 3.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 3.974871 TTCAACCGGCAAGAAACTAAC 57.025 42.857 0.00 0.00 0.00 2.34
23 24 5.914033 ACCTAAAGCAAGCGACTATATTCA 58.086 37.500 0.00 0.00 0.00 2.57
79 80 4.102838 CAGAATGAATGGGGAGAGATCACT 59.897 45.833 0.00 0.00 39.69 3.41
117 118 6.326843 ACTCCAAACTTAACTAAGACCAGAGT 59.673 38.462 3.50 7.14 37.08 3.24
232 357 3.753272 GTGAGTAATGACCACTGCACAAT 59.247 43.478 0.00 0.00 30.80 2.71
293 418 5.643379 AACATCAATGCATTTCCTACGTT 57.357 34.783 9.83 5.06 0.00 3.99
294 419 5.643379 AAACATCAATGCATTTCCTACGT 57.357 34.783 9.83 0.00 0.00 3.57
295 420 8.533965 CAATAAAACATCAATGCATTTCCTACG 58.466 33.333 9.83 0.00 0.00 3.51
296 421 9.585099 TCAATAAAACATCAATGCATTTCCTAC 57.415 29.630 9.83 0.00 0.00 3.18
455 617 4.569966 AGTCATGAAGCGCTAAGAAAGATG 59.430 41.667 12.05 5.64 0.00 2.90
460 622 3.925379 TGAAGTCATGAAGCGCTAAGAA 58.075 40.909 12.05 0.00 0.00 2.52
500 662 9.128107 GGCATGTACATATACACATTAATTTGC 57.872 33.333 8.32 3.25 44.11 3.68
605 782 3.844640 ACAATTTCTACTTGGCCACCTT 58.155 40.909 3.88 0.00 0.00 3.50
609 786 5.105146 ACAACAAACAATTTCTACTTGGCCA 60.105 36.000 0.00 0.00 0.00 5.36
949 1204 6.944862 AGGACCTGGCAAAATGAGATATATTC 59.055 38.462 0.00 0.00 0.00 1.75
966 1224 5.013183 TCCTCTTTTCTTCTAAAGGACCTGG 59.987 44.000 0.00 0.00 36.12 4.45
1584 1850 3.375699 AGACCCCGAATATTCTGTCTGT 58.624 45.455 21.53 10.54 31.53 3.41
1597 1863 0.616679 CCCAACTAAGGAGACCCCGA 60.617 60.000 0.00 0.00 40.87 5.14
1647 1913 3.136626 ACTTGGTCAAACTAGCCTTGAGT 59.863 43.478 7.86 1.55 33.56 3.41
1765 2032 7.063544 GTCCACAACTTAGCTTGTCTACATAAG 59.936 40.741 0.00 0.00 31.73 1.73
1792 2059 4.537751 TGGTACAGAAAAATGGAACCACA 58.462 39.130 0.00 0.00 36.19 4.17
1832 2099 6.867662 AGATCAATAATTCCACTAAAGGCG 57.132 37.500 0.00 0.00 0.00 5.52
1837 2104 9.547753 GCAGTCTAAGATCAATAATTCCACTAA 57.452 33.333 0.00 0.00 0.00 2.24
1838 2105 7.867909 CGCAGTCTAAGATCAATAATTCCACTA 59.132 37.037 0.00 0.00 0.00 2.74
1839 2106 6.703607 CGCAGTCTAAGATCAATAATTCCACT 59.296 38.462 0.00 0.00 0.00 4.00
1840 2107 6.701841 TCGCAGTCTAAGATCAATAATTCCAC 59.298 38.462 0.00 0.00 0.00 4.02
1842 2109 7.715265 TTCGCAGTCTAAGATCAATAATTCC 57.285 36.000 0.00 0.00 0.00 3.01
1843 2110 8.982685 TGATTCGCAGTCTAAGATCAATAATTC 58.017 33.333 0.00 0.00 0.00 2.17
1844 2111 8.893219 TGATTCGCAGTCTAAGATCAATAATT 57.107 30.769 0.00 0.00 0.00 1.40
1847 2114 7.763985 TGTTTGATTCGCAGTCTAAGATCAATA 59.236 33.333 0.00 0.00 0.00 1.90
1848 2115 6.595326 TGTTTGATTCGCAGTCTAAGATCAAT 59.405 34.615 0.00 0.00 0.00 2.57
1849 2116 5.931724 TGTTTGATTCGCAGTCTAAGATCAA 59.068 36.000 0.00 0.00 0.00 2.57
1850 2117 5.478407 TGTTTGATTCGCAGTCTAAGATCA 58.522 37.500 0.00 0.00 0.00 2.92
1851 2118 6.417327 CATGTTTGATTCGCAGTCTAAGATC 58.583 40.000 0.00 0.00 0.00 2.75
1852 2119 5.220739 GCATGTTTGATTCGCAGTCTAAGAT 60.221 40.000 0.00 0.00 0.00 2.40
1859 2126 1.538047 AGGCATGTTTGATTCGCAGT 58.462 45.000 0.00 0.00 0.00 4.40
1954 2221 9.630098 TTTCTAATCTTCTGAATCAATTTGCAC 57.370 29.630 0.00 0.00 0.00 4.57
2035 2302 3.560068 GGCAACCTATCACAATAAGGACG 59.440 47.826 0.00 0.00 0.00 4.79
2285 2552 7.832769 AGCTAACAAACAAAGTTCAAGGTTAA 58.167 30.769 0.00 0.00 0.00 2.01
2465 2732 2.316108 GGTCAAGGGCTTCTGGAAAAA 58.684 47.619 0.00 0.00 0.00 1.94
2470 2737 2.356667 GGGGTCAAGGGCTTCTGG 59.643 66.667 0.00 0.00 0.00 3.86
2471 2738 1.001641 CTGGGGTCAAGGGCTTCTG 60.002 63.158 0.00 0.00 0.00 3.02
2472 2739 2.234296 CCTGGGGTCAAGGGCTTCT 61.234 63.158 0.00 0.00 0.00 2.85
2473 2740 2.203549 CTCCTGGGGTCAAGGGCTTC 62.204 65.000 0.00 0.00 0.00 3.86
2475 2742 2.612115 CTCCTGGGGTCAAGGGCT 60.612 66.667 0.00 0.00 0.00 5.19
2562 2875 2.225491 TGTTGTCGCTAAACAAGGATGC 59.775 45.455 0.00 0.00 39.69 3.91
2594 2911 9.177304 GCCTAAACAAAAATACTAAACAGTGTC 57.823 33.333 0.00 0.00 0.00 3.67
2631 2950 8.177119 ACTTTCATGGTGCAAGTATTCTAAAA 57.823 30.769 0.00 0.00 0.00 1.52
2669 2995 8.243289 CATAATTGATGCAGTACGATACATGA 57.757 34.615 0.00 0.00 0.00 3.07
2722 3186 5.220548 CGTCATAAGAAGGAAAGATGCACTG 60.221 44.000 0.00 0.00 0.00 3.66
2905 3369 8.964476 ATAATACTGCCTACCATGCATATAAC 57.036 34.615 0.00 0.00 38.22 1.89
3139 3746 5.954296 AATTGTATGCCACATGCTCTATC 57.046 39.130 0.00 0.00 42.00 2.08
3429 4044 1.003812 TGTGGGGAAACAAGGATACCG 59.996 52.381 0.00 0.00 37.17 4.02
3510 4223 4.142026 CCATTCCGGTCACAGTAATCACTA 60.142 45.833 0.00 0.00 32.21 2.74
3511 4224 3.369471 CCATTCCGGTCACAGTAATCACT 60.369 47.826 0.00 0.00 34.42 3.41
3512 4225 2.936498 CCATTCCGGTCACAGTAATCAC 59.064 50.000 0.00 0.00 0.00 3.06
3513 4226 3.260475 CCATTCCGGTCACAGTAATCA 57.740 47.619 0.00 0.00 0.00 2.57
3526 4239 6.036083 CACAAATAGTCTCAACTACCATTCCG 59.964 42.308 0.00 0.00 40.74 4.30
3651 4591 1.707989 TCAACCAAGGGCTTGTATGGA 59.292 47.619 0.00 0.00 38.85 3.41
3785 4725 4.746115 CGGCGTAGTAAATAGGCATAACAA 59.254 41.667 0.00 0.00 45.19 2.83
3808 4748 2.224695 ACAGCCTGTACACCCCTTTTAC 60.225 50.000 0.00 0.00 0.00 2.01
4013 4958 7.438160 CCTTACGACAATGAATACTGCAATAGA 59.562 37.037 0.00 0.00 0.00 1.98
4043 4989 7.129457 TGCTACTTGTGAGGATGAGAAATAT 57.871 36.000 0.00 0.00 0.00 1.28
4238 5202 5.436175 TGTGCATAACATTGCCTAGTGTAT 58.564 37.500 0.00 0.00 42.06 2.29
4254 5218 7.507277 AGATTCATTAGAGTACTCCTGTGCATA 59.493 37.037 19.38 0.49 0.00 3.14
4338 5302 8.762645 TCAGACAAGGTCTATCAATAGTTGAAT 58.237 33.333 0.00 0.00 41.37 2.57
4367 5333 9.507329 TCTATGTCTCTTTGCTAATTTTCTGTT 57.493 29.630 0.00 0.00 0.00 3.16
4403 5369 6.243811 ACAAAACAGAAGTGACAACGTTAA 57.756 33.333 0.00 0.00 0.00 2.01
4463 5435 7.587629 CAAAAAGAGCATCAGTTCTTGATACA 58.412 34.615 0.00 0.00 44.76 2.29
4513 5485 4.155280 TGCCTTTTATACTTTCGCAGGAAC 59.845 41.667 0.00 0.00 0.00 3.62
4517 5489 6.604735 AGTATGCCTTTTATACTTTCGCAG 57.395 37.500 0.00 0.00 37.95 5.18
4534 5506 2.938956 AGCATGGGTCCTTAGTATGC 57.061 50.000 0.00 0.00 43.23 3.14
4537 5509 4.359105 AGTGTAAGCATGGGTCCTTAGTA 58.641 43.478 0.00 0.00 0.00 1.82
4558 5530 8.734386 ACCTCTGAAAAGAATAATTGCAAGTAG 58.266 33.333 12.62 0.00 0.00 2.57
4561 5533 9.565213 CTAACCTCTGAAAAGAATAATTGCAAG 57.435 33.333 4.94 0.00 0.00 4.01
4621 5593 9.566432 CTGCTTTTAGTATTATTCCCTTGAGAT 57.434 33.333 0.00 0.00 0.00 2.75
4655 5627 3.128242 GCAGCATGTTGATCAGCTAAACT 59.872 43.478 14.38 0.80 39.31 2.66
4663 5635 1.532523 TTTCCGCAGCATGTTGATCA 58.467 45.000 14.38 0.00 39.31 2.92
4664 5636 2.634982 TTTTCCGCAGCATGTTGATC 57.365 45.000 14.38 0.00 39.31 2.92
4675 5647 0.606401 CTCCAGGAGCTTTTTCCGCA 60.606 55.000 2.60 0.00 42.29 5.69
4676 5648 2.175236 CTCCAGGAGCTTTTTCCGC 58.825 57.895 2.60 0.00 42.29 5.54
4699 5671 2.355445 TATGCGCTGGAGGCTCTTCG 62.355 60.000 15.23 15.31 39.13 3.79
4702 5674 1.045350 TCTTATGCGCTGGAGGCTCT 61.045 55.000 15.23 0.00 39.13 4.09
4711 5683 1.959042 CTGGATGGTTCTTATGCGCT 58.041 50.000 9.73 0.00 0.00 5.92
4720 5692 1.065199 TGTCTGGATGCTGGATGGTTC 60.065 52.381 0.00 0.00 0.00 3.62
4723 5695 2.228059 GATTGTCTGGATGCTGGATGG 58.772 52.381 0.00 0.00 0.00 3.51
4727 5699 1.579698 CTCGATTGTCTGGATGCTGG 58.420 55.000 0.00 0.00 0.00 4.85
4742 5714 2.343758 GTGGTCTGGCAAGCTCGA 59.656 61.111 0.00 0.00 0.00 4.04
4759 5746 1.631405 TTTGCCTTTCAGGGTGATGG 58.369 50.000 0.00 0.00 35.37 3.51
4763 5750 2.031120 TGAGTTTTGCCTTTCAGGGTG 58.969 47.619 0.00 0.00 35.37 4.61
4778 5765 2.354805 GGACTATCCGCTGGTTTGAGTT 60.355 50.000 0.00 0.00 0.00 3.01
4779 5766 1.207329 GGACTATCCGCTGGTTTGAGT 59.793 52.381 0.00 0.00 0.00 3.41
4790 5777 1.475280 TGTTTCGGTCTGGACTATCCG 59.525 52.381 0.67 0.00 40.17 4.18
4797 5784 1.003118 CATCCCTTGTTTCGGTCTGGA 59.997 52.381 0.00 0.00 0.00 3.86
4798 5785 1.453155 CATCCCTTGTTTCGGTCTGG 58.547 55.000 0.00 0.00 0.00 3.86
4801 5788 0.608035 TGCCATCCCTTGTTTCGGTC 60.608 55.000 0.00 0.00 0.00 4.79
4828 5815 0.107703 TAGTCGGGCCTTCATTGCTG 60.108 55.000 0.84 0.00 0.00 4.41
4842 5829 2.655364 CTGACGGCGGCATAGTCG 60.655 66.667 19.33 0.00 45.76 4.18
4843 5830 2.279517 CCTGACGGCGGCATAGTC 60.280 66.667 19.33 9.20 35.61 2.59
4845 5832 2.872388 ATCCCTGACGGCGGCATAG 61.872 63.158 19.33 11.42 0.00 2.23
4850 5837 3.550431 ATCCATCCCTGACGGCGG 61.550 66.667 13.24 0.00 0.00 6.13
4855 5842 0.465097 CCACTGCATCCATCCCTGAC 60.465 60.000 0.00 0.00 0.00 3.51
4860 5847 2.726821 TCTTTTCCACTGCATCCATCC 58.273 47.619 0.00 0.00 0.00 3.51
4882 5869 1.006400 TCCCTCTCAGACAGATCAGCA 59.994 52.381 0.00 0.00 0.00 4.41
4883 5870 1.682854 CTCCCTCTCAGACAGATCAGC 59.317 57.143 0.00 0.00 0.00 4.26
4884 5871 1.682854 GCTCCCTCTCAGACAGATCAG 59.317 57.143 0.00 0.00 0.00 2.90
4885 5872 1.287442 AGCTCCCTCTCAGACAGATCA 59.713 52.381 0.00 0.00 0.00 2.92
4886 5873 1.682854 CAGCTCCCTCTCAGACAGATC 59.317 57.143 0.00 0.00 0.00 2.75
4887 5874 1.287442 TCAGCTCCCTCTCAGACAGAT 59.713 52.381 0.00 0.00 0.00 2.90
4888 5875 0.701147 TCAGCTCCCTCTCAGACAGA 59.299 55.000 0.00 0.00 0.00 3.41
4889 5876 1.477700 CTTCAGCTCCCTCTCAGACAG 59.522 57.143 0.00 0.00 0.00 3.51
4890 5877 1.554836 CTTCAGCTCCCTCTCAGACA 58.445 55.000 0.00 0.00 0.00 3.41
4891 5878 0.175531 GCTTCAGCTCCCTCTCAGAC 59.824 60.000 0.00 0.00 38.21 3.51
4892 5879 0.251967 TGCTTCAGCTCCCTCTCAGA 60.252 55.000 0.00 0.00 42.66 3.27
4893 5880 0.831966 ATGCTTCAGCTCCCTCTCAG 59.168 55.000 0.00 0.00 42.66 3.35
4894 5881 0.540454 CATGCTTCAGCTCCCTCTCA 59.460 55.000 0.00 0.00 42.66 3.27
4895 5882 0.179051 CCATGCTTCAGCTCCCTCTC 60.179 60.000 0.00 0.00 42.66 3.20
4896 5883 0.619832 TCCATGCTTCAGCTCCCTCT 60.620 55.000 0.00 0.00 42.66 3.69
4897 5884 0.179051 CTCCATGCTTCAGCTCCCTC 60.179 60.000 0.00 0.00 42.66 4.30
4898 5885 0.913451 ACTCCATGCTTCAGCTCCCT 60.913 55.000 0.00 0.00 42.66 4.20
4899 5886 0.747283 CACTCCATGCTTCAGCTCCC 60.747 60.000 0.00 0.00 42.66 4.30
4900 5887 0.747283 CCACTCCATGCTTCAGCTCC 60.747 60.000 0.00 0.00 42.66 4.70
4901 5888 0.251354 TCCACTCCATGCTTCAGCTC 59.749 55.000 0.00 0.00 42.66 4.09
4902 5889 0.694771 TTCCACTCCATGCTTCAGCT 59.305 50.000 0.00 0.00 42.66 4.24
4903 5890 1.760192 ATTCCACTCCATGCTTCAGC 58.240 50.000 0.00 0.00 42.50 4.26
4904 5891 2.426024 CCAATTCCACTCCATGCTTCAG 59.574 50.000 0.00 0.00 0.00 3.02
4905 5892 2.225091 ACCAATTCCACTCCATGCTTCA 60.225 45.455 0.00 0.00 0.00 3.02
4906 5893 2.450476 ACCAATTCCACTCCATGCTTC 58.550 47.619 0.00 0.00 0.00 3.86
4907 5894 2.564062 CAACCAATTCCACTCCATGCTT 59.436 45.455 0.00 0.00 0.00 3.91
4908 5895 2.173519 CAACCAATTCCACTCCATGCT 58.826 47.619 0.00 0.00 0.00 3.79
4909 5896 1.404583 GCAACCAATTCCACTCCATGC 60.405 52.381 0.00 0.00 0.00 4.06
4910 5897 1.205417 GGCAACCAATTCCACTCCATG 59.795 52.381 0.00 0.00 0.00 3.66
4911 5898 1.560505 GGCAACCAATTCCACTCCAT 58.439 50.000 0.00 0.00 0.00 3.41
4912 5899 0.893270 CGGCAACCAATTCCACTCCA 60.893 55.000 0.00 0.00 0.00 3.86
4913 5900 0.608035 TCGGCAACCAATTCCACTCC 60.608 55.000 0.00 0.00 0.00 3.85
4914 5901 0.804989 CTCGGCAACCAATTCCACTC 59.195 55.000 0.00 0.00 0.00 3.51
4915 5902 0.609131 CCTCGGCAACCAATTCCACT 60.609 55.000 0.00 0.00 0.00 4.00
4916 5903 0.608035 TCCTCGGCAACCAATTCCAC 60.608 55.000 0.00 0.00 0.00 4.02
4917 5904 0.331278 ATCCTCGGCAACCAATTCCA 59.669 50.000 0.00 0.00 0.00 3.53
4918 5905 0.740737 CATCCTCGGCAACCAATTCC 59.259 55.000 0.00 0.00 0.00 3.01
4919 5906 1.401905 GTCATCCTCGGCAACCAATTC 59.598 52.381 0.00 0.00 0.00 2.17
4920 5907 1.463674 GTCATCCTCGGCAACCAATT 58.536 50.000 0.00 0.00 0.00 2.32
4921 5908 0.744414 CGTCATCCTCGGCAACCAAT 60.744 55.000 0.00 0.00 0.00 3.16
4922 5909 1.375396 CGTCATCCTCGGCAACCAA 60.375 57.895 0.00 0.00 0.00 3.67
4923 5910 1.822114 TTCGTCATCCTCGGCAACCA 61.822 55.000 0.00 0.00 0.00 3.67
4924 5911 0.672401 TTTCGTCATCCTCGGCAACC 60.672 55.000 0.00 0.00 0.00 3.77
4925 5912 1.153353 TTTTCGTCATCCTCGGCAAC 58.847 50.000 0.00 0.00 0.00 4.17
4926 5913 1.533731 GTTTTTCGTCATCCTCGGCAA 59.466 47.619 0.00 0.00 0.00 4.52
4927 5914 1.153353 GTTTTTCGTCATCCTCGGCA 58.847 50.000 0.00 0.00 0.00 5.69
4928 5915 1.136057 GTGTTTTTCGTCATCCTCGGC 60.136 52.381 0.00 0.00 0.00 5.54
4929 5916 1.126113 CGTGTTTTTCGTCATCCTCGG 59.874 52.381 0.00 0.00 0.00 4.63
4930 5917 2.055838 TCGTGTTTTTCGTCATCCTCG 58.944 47.619 0.00 0.00 0.00 4.63
4931 5918 2.798283 TGTCGTGTTTTTCGTCATCCTC 59.202 45.455 0.00 0.00 0.00 3.71
4932 5919 2.800544 CTGTCGTGTTTTTCGTCATCCT 59.199 45.455 0.00 0.00 0.00 3.24
4933 5920 2.798283 TCTGTCGTGTTTTTCGTCATCC 59.202 45.455 0.00 0.00 0.00 3.51
4934 5921 4.446234 CTTCTGTCGTGTTTTTCGTCATC 58.554 43.478 0.00 0.00 0.00 2.92
4935 5922 3.247648 CCTTCTGTCGTGTTTTTCGTCAT 59.752 43.478 0.00 0.00 0.00 3.06
4936 5923 2.605818 CCTTCTGTCGTGTTTTTCGTCA 59.394 45.455 0.00 0.00 0.00 4.35
4937 5924 2.599142 GCCTTCTGTCGTGTTTTTCGTC 60.599 50.000 0.00 0.00 0.00 4.20
4938 5925 1.329599 GCCTTCTGTCGTGTTTTTCGT 59.670 47.619 0.00 0.00 0.00 3.85
4939 5926 1.329292 TGCCTTCTGTCGTGTTTTTCG 59.671 47.619 0.00 0.00 0.00 3.46
4940 5927 2.612212 TCTGCCTTCTGTCGTGTTTTTC 59.388 45.455 0.00 0.00 0.00 2.29
4941 5928 2.354821 GTCTGCCTTCTGTCGTGTTTTT 59.645 45.455 0.00 0.00 0.00 1.94
4942 5929 1.940613 GTCTGCCTTCTGTCGTGTTTT 59.059 47.619 0.00 0.00 0.00 2.43
4943 5930 1.583054 GTCTGCCTTCTGTCGTGTTT 58.417 50.000 0.00 0.00 0.00 2.83
4944 5931 0.249911 GGTCTGCCTTCTGTCGTGTT 60.250 55.000 0.00 0.00 0.00 3.32
4945 5932 1.367840 GGTCTGCCTTCTGTCGTGT 59.632 57.895 0.00 0.00 0.00 4.49
4946 5933 1.734477 CGGTCTGCCTTCTGTCGTG 60.734 63.158 0.00 0.00 0.00 4.35
4947 5934 2.143594 GACGGTCTGCCTTCTGTCGT 62.144 60.000 0.00 0.00 31.71 4.34
4948 5935 1.444553 GACGGTCTGCCTTCTGTCG 60.445 63.158 0.00 0.00 31.71 4.35
4949 5936 1.079750 GGACGGTCTGCCTTCTGTC 60.080 63.158 8.23 0.00 38.70 3.51
4950 5937 2.584391 GGGACGGTCTGCCTTCTGT 61.584 63.158 8.23 0.00 33.90 3.41
4951 5938 2.266055 GGGACGGTCTGCCTTCTG 59.734 66.667 8.23 0.00 33.90 3.02
4952 5939 3.003763 GGGGACGGTCTGCCTTCT 61.004 66.667 8.23 0.00 33.90 2.85
4953 5940 4.097361 GGGGGACGGTCTGCCTTC 62.097 72.222 8.23 0.00 32.75 3.46
4971 5958 3.775654 CCTCTCTGTGCGGGGGAC 61.776 72.222 0.00 0.00 0.00 4.46
4972 5959 3.317436 ATCCTCTCTGTGCGGGGGA 62.317 63.158 0.00 0.00 0.00 4.81
4973 5960 2.765807 ATCCTCTCTGTGCGGGGG 60.766 66.667 0.00 0.00 0.00 5.40
4974 5961 1.406065 ATGATCCTCTCTGTGCGGGG 61.406 60.000 0.00 0.00 0.00 5.73
4975 5962 0.033228 GATGATCCTCTCTGTGCGGG 59.967 60.000 0.00 0.00 0.00 6.13
4976 5963 0.749049 TGATGATCCTCTCTGTGCGG 59.251 55.000 0.00 0.00 0.00 5.69
4977 5964 1.680207 TCTGATGATCCTCTCTGTGCG 59.320 52.381 0.00 0.00 0.00 5.34
4978 5965 3.815856 TTCTGATGATCCTCTCTGTGC 57.184 47.619 0.00 0.00 0.00 4.57
4979 5966 4.121317 GCTTTCTGATGATCCTCTCTGTG 58.879 47.826 0.00 0.00 0.00 3.66
4980 5967 3.134442 GGCTTTCTGATGATCCTCTCTGT 59.866 47.826 0.00 0.00 0.00 3.41
4981 5968 3.731089 GGCTTTCTGATGATCCTCTCTG 58.269 50.000 0.00 0.00 0.00 3.35
4982 5969 2.364970 CGGCTTTCTGATGATCCTCTCT 59.635 50.000 0.00 0.00 0.00 3.10
4983 5970 2.753296 CGGCTTTCTGATGATCCTCTC 58.247 52.381 0.00 0.00 0.00 3.20
4984 5971 1.202627 GCGGCTTTCTGATGATCCTCT 60.203 52.381 0.00 0.00 0.00 3.69
4985 5972 1.202627 AGCGGCTTTCTGATGATCCTC 60.203 52.381 0.00 0.00 0.00 3.71
4999 5986 3.274455 CTCTGTCGTGTGAGCGGCT 62.274 63.158 0.00 0.00 37.38 5.52
5001 5988 2.126307 CCTCTGTCGTGTGAGCGG 60.126 66.667 0.00 0.00 0.00 5.52
5012 5999 2.286523 CCTCTTCCGTGCCCTCTGT 61.287 63.158 0.00 0.00 0.00 3.41
5023 6010 4.516195 GACGGCTCGCCCTCTTCC 62.516 72.222 1.72 0.00 0.00 3.46
5026 6013 2.044252 TTAGACGGCTCGCCCTCT 60.044 61.111 12.83 12.83 35.96 3.69
5037 6024 3.827625 CACTCTTGACTGTCCTTAGACG 58.172 50.000 5.17 3.50 46.74 4.18
5040 6027 2.300152 TGGCACTCTTGACTGTCCTTAG 59.700 50.000 5.17 2.43 0.00 2.18
5041 6028 2.325484 TGGCACTCTTGACTGTCCTTA 58.675 47.619 5.17 0.00 0.00 2.69
5042 6029 1.131638 TGGCACTCTTGACTGTCCTT 58.868 50.000 5.17 0.00 0.00 3.36
5044 6031 2.079925 GAATGGCACTCTTGACTGTCC 58.920 52.381 5.17 0.00 0.00 4.02
5045 6032 2.771089 TGAATGGCACTCTTGACTGTC 58.229 47.619 0.00 0.00 0.00 3.51
5046 6033 2.936919 TGAATGGCACTCTTGACTGT 57.063 45.000 0.00 0.00 0.00 3.55
5047 6034 3.611057 GCTTTGAATGGCACTCTTGACTG 60.611 47.826 0.00 0.00 0.00 3.51
5048 6035 2.555757 GCTTTGAATGGCACTCTTGACT 59.444 45.455 0.00 0.00 0.00 3.41
5049 6036 2.666619 CGCTTTGAATGGCACTCTTGAC 60.667 50.000 0.00 0.00 0.00 3.18
5050 6037 1.536766 CGCTTTGAATGGCACTCTTGA 59.463 47.619 0.00 0.00 0.00 3.02
5051 6038 1.401931 CCGCTTTGAATGGCACTCTTG 60.402 52.381 0.00 0.00 0.00 3.02
5053 6040 0.036732 TCCGCTTTGAATGGCACTCT 59.963 50.000 0.00 0.00 0.00 3.24
5054 6041 0.881118 TTCCGCTTTGAATGGCACTC 59.119 50.000 0.00 0.00 0.00 3.51
5055 6042 0.883833 CTTCCGCTTTGAATGGCACT 59.116 50.000 0.00 0.00 0.00 4.40
5056 6043 0.109132 CCTTCCGCTTTGAATGGCAC 60.109 55.000 0.00 0.00 0.00 5.01
5057 6044 0.251121 TCCTTCCGCTTTGAATGGCA 60.251 50.000 0.00 0.00 0.00 4.92
5060 6047 1.135575 GTGCTCCTTCCGCTTTGAATG 60.136 52.381 0.00 0.00 0.00 2.67
5063 6050 0.603707 CTGTGCTCCTTCCGCTTTGA 60.604 55.000 0.00 0.00 0.00 2.69
5147 6134 1.070758 CGGATCATTCTACCCAGGTGG 59.929 57.143 0.00 0.00 41.37 4.61
5149 6136 0.759346 GCGGATCATTCTACCCAGGT 59.241 55.000 0.00 0.00 0.00 4.00
5166 6155 1.992233 ATTAGCACAATGCCACCGCG 61.992 55.000 0.00 0.00 46.52 6.46
5169 6158 3.350766 GCATTAGCACAATGCCACC 57.649 52.632 19.86 0.00 46.52 4.61
5191 6185 5.853572 AAGAATAGGTTTTCACCCTGGTA 57.146 39.130 0.00 0.00 45.63 3.25
5306 6305 1.887242 ACGAACATGCACGCACTGT 60.887 52.632 11.13 0.00 0.00 3.55
5333 6332 2.335011 GCCCAGCGTTTCCACAAC 59.665 61.111 0.00 0.00 0.00 3.32
5358 6357 2.541346 CTGCATAATTCTCGCATCACGT 59.459 45.455 0.00 0.00 44.19 4.49
5414 6413 2.456119 GGAGCATCGAACCTGCACG 61.456 63.158 11.76 0.00 42.15 5.34
5446 6445 1.475280 CAATTGCACATGCTGCCTAGT 59.525 47.619 14.85 3.44 46.51 2.57
5560 6580 1.031571 TTTCTGGCATGCATCCGTCC 61.032 55.000 21.36 0.00 0.00 4.79
5580 6600 2.807967 CTCTTTTCATGGACGAGTTGCA 59.192 45.455 0.00 0.00 0.00 4.08
5609 6629 6.205464 TCCTGTGATCTTGTTTTCTTGATGAC 59.795 38.462 0.00 0.00 0.00 3.06
5618 6638 5.278660 GCATGTTCTCCTGTGATCTTGTTTT 60.279 40.000 0.00 0.00 0.00 2.43
5619 6639 4.217118 GCATGTTCTCCTGTGATCTTGTTT 59.783 41.667 0.00 0.00 0.00 2.83
5620 6640 3.755378 GCATGTTCTCCTGTGATCTTGTT 59.245 43.478 0.00 0.00 0.00 2.83
5621 6641 3.244665 TGCATGTTCTCCTGTGATCTTGT 60.245 43.478 0.00 0.00 0.00 3.16
5622 6642 3.126514 GTGCATGTTCTCCTGTGATCTTG 59.873 47.826 0.00 0.00 0.00 3.02
5623 6643 3.008813 AGTGCATGTTCTCCTGTGATCTT 59.991 43.478 0.00 0.00 0.00 2.40
5624 6644 2.570752 AGTGCATGTTCTCCTGTGATCT 59.429 45.455 0.00 0.00 0.00 2.75
5625 6645 2.676839 CAGTGCATGTTCTCCTGTGATC 59.323 50.000 0.00 0.00 0.00 2.92
5683 6703 2.186076 GCTTCTCGTTACGGATCTGTG 58.814 52.381 17.78 0.57 0.00 3.66
5690 6710 2.095372 GGGAAATTGCTTCTCGTTACGG 59.905 50.000 4.53 0.00 34.17 4.02
5714 6734 1.371558 GACGAAGGACAGGCCAGTT 59.628 57.895 5.01 0.00 40.02 3.16
5722 6742 5.048643 TGAAAAAGTTTGTTGACGAAGGACA 60.049 36.000 0.00 0.00 0.00 4.02
5726 6746 7.304849 CGAGAATGAAAAAGTTTGTTGACGAAG 60.305 37.037 0.00 0.00 0.00 3.79
5818 6838 2.481276 GGCGGTTTCTTTGTTGCTTTCT 60.481 45.455 0.00 0.00 0.00 2.52
5845 6865 0.037232 CGTCGCCTTCCTCCTTTTCT 60.037 55.000 0.00 0.00 0.00 2.52
5922 6943 0.673644 TTGCTTAAGCGAGAGGGTGC 60.674 55.000 21.97 0.00 45.83 5.01
5932 6953 2.175811 CGGTGGCGTTGCTTAAGC 59.824 61.111 20.84 20.84 42.50 3.09
5955 6976 3.506096 CGTCCTAGTCGCCTGCGA 61.506 66.667 10.61 10.61 46.87 5.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.