Multiple sequence alignment - TraesCS4D01G113200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G113200 chr4D 100.000 4201 0 0 1 4201 93762506 93758306 0.000000e+00 7758.0
1 TraesCS4D01G113200 chr4D 79.957 1407 246 23 976 2360 93612888 93611496 0.000000e+00 1003.0
2 TraesCS4D01G113200 chr4D 79.237 655 106 23 1298 1943 97969994 97969361 3.000000e-116 429.0
3 TraesCS4D01G113200 chr4D 80.638 470 87 4 2471 2938 93611087 93610620 1.110000e-95 361.0
4 TraesCS4D01G113200 chr4D 76.741 632 110 29 1524 2135 98015398 98014784 6.780000e-83 318.0
5 TraesCS4D01G113200 chr4D 74.086 629 129 25 1526 2134 435198733 435198119 1.180000e-55 228.0
6 TraesCS4D01G113200 chr4D 90.000 160 16 0 1297 1456 98015577 98015418 1.530000e-49 207.0
7 TraesCS4D01G113200 chr4D 89.109 101 8 3 2989 3087 93759327 93759228 5.700000e-24 122.0
8 TraesCS4D01G113200 chr4A 95.733 2250 70 14 845 3087 487916218 487918448 0.000000e+00 3600.0
9 TraesCS4D01G113200 chr4A 80.077 1044 183 20 976 2008 488248828 488249857 0.000000e+00 752.0
10 TraesCS4D01G113200 chr4A 94.488 254 14 0 3380 3633 487918708 487918961 3.940000e-105 392.0
11 TraesCS4D01G113200 chr4A 80.665 481 85 8 2461 2938 488250573 488251048 2.390000e-97 366.0
12 TraesCS4D01G113200 chr4A 93.421 228 8 5 3164 3387 487918331 487918555 8.710000e-87 331.0
13 TraesCS4D01G113200 chr4A 75.671 633 117 30 1524 2135 478191431 478192047 8.890000e-72 281.0
14 TraesCS4D01G113200 chr4B 95.598 1681 57 11 831 2509 132295413 132293748 0.000000e+00 2678.0
15 TraesCS4D01G113200 chr4B 79.986 1409 245 27 976 2362 132056763 132055370 0.000000e+00 1005.0
16 TraesCS4D01G113200 chr4B 95.318 534 19 1 2554 3087 132293750 132293223 0.000000e+00 843.0
17 TraesCS4D01G113200 chr4B 92.227 476 28 6 3165 3636 132293339 132292869 0.000000e+00 665.0
18 TraesCS4D01G113200 chr4B 79.116 656 107 21 1297 1943 139571956 139571322 3.880000e-115 425.0
19 TraesCS4D01G113200 chr4B 80.426 470 87 5 2471 2938 132054941 132054475 1.860000e-93 353.0
20 TraesCS4D01G113200 chr4B 74.566 346 73 13 1526 1862 535346595 535346256 2.040000e-28 137.0
21 TraesCS4D01G113200 chr3D 93.966 580 32 2 3623 4201 182190034 182190611 0.000000e+00 874.0
22 TraesCS4D01G113200 chr3D 85.350 471 33 18 325 792 87328264 87328701 4.950000e-124 455.0
23 TraesCS4D01G113200 chr3D 85.086 409 44 13 1 400 87327977 87328377 6.540000e-108 401.0
24 TraesCS4D01G113200 chr3D 78.616 159 30 4 2206 2362 44210089 44210245 7.430000e-18 102.0
25 TraesCS4D01G113200 chr6D 85.086 818 47 36 1 804 33247978 33248734 0.000000e+00 765.0
26 TraesCS4D01G113200 chr6D 79.184 490 75 20 325 801 344205419 344205894 8.770000e-82 315.0
27 TraesCS4D01G113200 chr6D 75.980 612 98 34 1282 1873 143413639 143413057 1.920000e-68 270.0
28 TraesCS4D01G113200 chr6D 79.263 434 45 21 1298 1728 61003130 61003521 1.160000e-65 261.0
29 TraesCS4D01G113200 chr6D 82.222 90 11 5 180 266 429804749 429804836 5.830000e-09 73.1
30 TraesCS4D01G113200 chr1B 83.498 812 70 34 1 801 367431409 367430651 0.000000e+00 699.0
31 TraesCS4D01G113200 chr7D 81.071 840 84 47 1 788 208679519 208680335 6.010000e-168 601.0
32 TraesCS4D01G113200 chr7D 84.901 404 50 9 325 726 88006957 88007351 8.460000e-107 398.0
33 TraesCS4D01G113200 chr7D 75.895 726 118 42 1 698 547407023 547407719 6.780000e-83 318.0
34 TraesCS4D01G113200 chr7D 84.543 317 39 10 3831 4140 93077949 93078262 5.280000e-79 305.0
35 TraesCS4D01G113200 chr3B 88.632 475 36 14 331 803 93243701 93244159 2.840000e-156 562.0
36 TraesCS4D01G113200 chr3B 85.405 370 40 11 1 361 93243406 93243770 5.130000e-99 372.0
37 TraesCS4D01G113200 chr6B 91.467 375 26 4 3827 4199 584581161 584580791 1.040000e-140 510.0
38 TraesCS4D01G113200 chr6B 83.900 559 56 25 216 766 43148677 43149209 1.740000e-138 503.0
39 TraesCS4D01G113200 chr6B 85.361 485 54 12 325 804 66737116 66737588 1.760000e-133 486.0
40 TraesCS4D01G113200 chr6B 85.455 385 46 8 1 378 43148497 43148878 3.940000e-105 392.0
41 TraesCS4D01G113200 chr6B 83.025 324 41 11 1 320 66736838 66737151 8.890000e-72 281.0
42 TraesCS4D01G113200 chr6B 74.838 616 119 31 1282 1873 255279667 255279064 3.240000e-61 246.0
43 TraesCS4D01G113200 chr1A 87.364 459 31 16 345 800 111588549 111588983 6.270000e-138 501.0
44 TraesCS4D01G113200 chr1A 81.023 469 67 14 325 782 560182490 560182947 1.860000e-93 353.0
45 TraesCS4D01G113200 chr1A 78.701 385 65 15 3 378 558041458 558041082 1.510000e-59 241.0
46 TraesCS4D01G113200 chr1A 88.482 191 18 3 325 515 558041174 558040988 1.180000e-55 228.0
47 TraesCS4D01G113200 chr1A 80.000 325 45 17 3 316 560182206 560182521 5.470000e-54 222.0
48 TraesCS4D01G113200 chr2B 89.844 384 31 5 3824 4201 23230130 23230511 1.760000e-133 486.0
49 TraesCS4D01G113200 chr2B 83.547 468 36 22 339 803 707717862 707717433 2.350000e-107 399.0
50 TraesCS4D01G113200 chr2B 82.581 310 34 10 1 303 707718143 707717847 5.390000e-64 255.0
51 TraesCS4D01G113200 chr2B 81.197 234 16 12 570 803 707568515 707568310 3.360000e-36 163.0
52 TraesCS4D01G113200 chr2B 97.500 40 1 0 188 227 161208047 161208008 7.540000e-08 69.4
53 TraesCS4D01G113200 chr1D 87.393 349 24 18 345 690 108800238 108799907 2.370000e-102 383.0
54 TraesCS4D01G113200 chr1D 81.127 355 46 12 325 665 467800124 467799777 8.960000e-67 265.0
55 TraesCS4D01G113200 chr1D 89.683 126 9 3 1 124 108725402 108725525 1.560000e-34 158.0
56 TraesCS4D01G113200 chr1D 83.562 73 6 6 192 262 106513869 106513801 3.510000e-06 63.9
57 TraesCS4D01G113200 chr2A 77.594 665 108 26 1295 1943 32497357 32497996 8.580000e-97 364.0
58 TraesCS4D01G113200 chr7B 82.895 76 7 4 158 229 438979469 438979396 3.510000e-06 63.9
59 TraesCS4D01G113200 chr7B 91.111 45 2 2 178 221 723969916 723969959 4.540000e-05 60.2
60 TraesCS4D01G113200 chr5B 81.081 74 9 4 192 262 678919187 678919116 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G113200 chr4D 93758306 93762506 4200 True 3940.000000 7758 94.554500 1 4201 2 chr4D.!!$R4 4200
1 TraesCS4D01G113200 chr4D 93610620 93612888 2268 True 682.000000 1003 80.297500 976 2938 2 chr4D.!!$R3 1962
2 TraesCS4D01G113200 chr4D 97969361 97969994 633 True 429.000000 429 79.237000 1298 1943 1 chr4D.!!$R1 645
3 TraesCS4D01G113200 chr4D 98014784 98015577 793 True 262.500000 318 83.370500 1297 2135 2 chr4D.!!$R5 838
4 TraesCS4D01G113200 chr4D 435198119 435198733 614 True 228.000000 228 74.086000 1526 2134 1 chr4D.!!$R2 608
5 TraesCS4D01G113200 chr4A 487916218 487918961 2743 False 1441.000000 3600 94.547333 845 3633 3 chr4A.!!$F2 2788
6 TraesCS4D01G113200 chr4A 488248828 488251048 2220 False 559.000000 752 80.371000 976 2938 2 chr4A.!!$F3 1962
7 TraesCS4D01G113200 chr4A 478191431 478192047 616 False 281.000000 281 75.671000 1524 2135 1 chr4A.!!$F1 611
8 TraesCS4D01G113200 chr4B 132292869 132295413 2544 True 1395.333333 2678 94.381000 831 3636 3 chr4B.!!$R4 2805
9 TraesCS4D01G113200 chr4B 132054475 132056763 2288 True 679.000000 1005 80.206000 976 2938 2 chr4B.!!$R3 1962
10 TraesCS4D01G113200 chr4B 139571322 139571956 634 True 425.000000 425 79.116000 1297 1943 1 chr4B.!!$R1 646
11 TraesCS4D01G113200 chr3D 182190034 182190611 577 False 874.000000 874 93.966000 3623 4201 1 chr3D.!!$F2 578
12 TraesCS4D01G113200 chr3D 87327977 87328701 724 False 428.000000 455 85.218000 1 792 2 chr3D.!!$F3 791
13 TraesCS4D01G113200 chr6D 33247978 33248734 756 False 765.000000 765 85.086000 1 804 1 chr6D.!!$F1 803
14 TraesCS4D01G113200 chr6D 143413057 143413639 582 True 270.000000 270 75.980000 1282 1873 1 chr6D.!!$R1 591
15 TraesCS4D01G113200 chr1B 367430651 367431409 758 True 699.000000 699 83.498000 1 801 1 chr1B.!!$R1 800
16 TraesCS4D01G113200 chr7D 208679519 208680335 816 False 601.000000 601 81.071000 1 788 1 chr7D.!!$F3 787
17 TraesCS4D01G113200 chr7D 547407023 547407719 696 False 318.000000 318 75.895000 1 698 1 chr7D.!!$F4 697
18 TraesCS4D01G113200 chr3B 93243406 93244159 753 False 467.000000 562 87.018500 1 803 2 chr3B.!!$F1 802
19 TraesCS4D01G113200 chr6B 43148497 43149209 712 False 447.500000 503 84.677500 1 766 2 chr6B.!!$F1 765
20 TraesCS4D01G113200 chr6B 66736838 66737588 750 False 383.500000 486 84.193000 1 804 2 chr6B.!!$F2 803
21 TraesCS4D01G113200 chr6B 255279064 255279667 603 True 246.000000 246 74.838000 1282 1873 1 chr6B.!!$R1 591
22 TraesCS4D01G113200 chr1A 560182206 560182947 741 False 287.500000 353 80.511500 3 782 2 chr1A.!!$F2 779
23 TraesCS4D01G113200 chr2B 707717433 707718143 710 True 327.000000 399 83.064000 1 803 2 chr2B.!!$R3 802
24 TraesCS4D01G113200 chr2A 32497357 32497996 639 False 364.000000 364 77.594000 1295 1943 1 chr2A.!!$F1 648

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
945 1102 0.991344 CCGCCATCGCATTTCAAAAC 59.009 50.0 0.0 0.0 34.03 2.43 F
2513 3168 0.385390 CCACAGGCAAGGTCAACAAC 59.615 55.0 0.0 0.0 0.00 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2539 3194 0.038251 GTGTGACTGGATGCACTCGA 60.038 55.0 0.0 0.0 36.05 4.04 R
3400 4267 0.674581 TTGGCATTCCAGACGAGCAG 60.675 55.0 0.0 0.0 44.53 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
406 530 6.256757 TCCGAACAAAATTTGGAAACATGAAC 59.743 34.615 10.71 0.00 42.32 3.18
407 531 6.036517 CCGAACAAAATTTGGAAACATGAACA 59.963 34.615 10.71 0.00 42.32 3.18
559 697 5.893824 AGAAAAGAAACAGGAACAGGAACAT 59.106 36.000 0.00 0.00 0.00 2.71
563 701 7.839680 AAGAAACAGGAACAGGAACATAAAT 57.160 32.000 0.00 0.00 0.00 1.40
564 702 7.839680 AGAAACAGGAACAGGAACATAAATT 57.160 32.000 0.00 0.00 0.00 1.82
565 703 8.250143 AGAAACAGGAACAGGAACATAAATTT 57.750 30.769 0.00 0.00 0.00 1.82
566 704 8.143835 AGAAACAGGAACAGGAACATAAATTTG 58.856 33.333 0.00 0.00 0.00 2.32
567 705 6.976934 ACAGGAACAGGAACATAAATTTGT 57.023 33.333 0.00 0.00 0.00 2.83
606 752 7.926018 ACATAAGAAAGCGAAAAACCAGAAAAT 59.074 29.630 0.00 0.00 0.00 1.82
709 859 2.791849 GCCTGTACTCGTTAGCTTCTCG 60.792 54.545 0.00 0.00 0.00 4.04
804 960 2.487762 TGCGTCAAATAGGAAAAGCCAG 59.512 45.455 0.00 0.00 40.02 4.85
805 961 2.732282 GCGTCAAATAGGAAAAGCCAGC 60.732 50.000 0.00 0.00 40.02 4.85
806 962 2.487762 CGTCAAATAGGAAAAGCCAGCA 59.512 45.455 0.00 0.00 40.02 4.41
807 963 3.057596 CGTCAAATAGGAAAAGCCAGCAA 60.058 43.478 0.00 0.00 40.02 3.91
808 964 4.558496 CGTCAAATAGGAAAAGCCAGCAAA 60.558 41.667 0.00 0.00 40.02 3.68
809 965 4.686091 GTCAAATAGGAAAAGCCAGCAAAC 59.314 41.667 0.00 0.00 40.02 2.93
810 966 4.588528 TCAAATAGGAAAAGCCAGCAAACT 59.411 37.500 0.00 0.00 40.02 2.66
811 967 5.772672 TCAAATAGGAAAAGCCAGCAAACTA 59.227 36.000 0.00 0.00 40.02 2.24
812 968 5.644977 AATAGGAAAAGCCAGCAAACTAC 57.355 39.130 0.00 0.00 40.02 2.73
813 969 3.229697 AGGAAAAGCCAGCAAACTACT 57.770 42.857 0.00 0.00 40.02 2.57
814 970 3.149981 AGGAAAAGCCAGCAAACTACTC 58.850 45.455 0.00 0.00 40.02 2.59
815 971 2.229062 GGAAAAGCCAGCAAACTACTCC 59.771 50.000 0.00 0.00 36.34 3.85
816 972 2.656947 AAAGCCAGCAAACTACTCCA 57.343 45.000 0.00 0.00 0.00 3.86
817 973 2.191128 AAGCCAGCAAACTACTCCAG 57.809 50.000 0.00 0.00 0.00 3.86
818 974 1.352083 AGCCAGCAAACTACTCCAGA 58.648 50.000 0.00 0.00 0.00 3.86
819 975 1.912043 AGCCAGCAAACTACTCCAGAT 59.088 47.619 0.00 0.00 0.00 2.90
820 976 2.307098 AGCCAGCAAACTACTCCAGATT 59.693 45.455 0.00 0.00 0.00 2.40
821 977 2.680339 GCCAGCAAACTACTCCAGATTC 59.320 50.000 0.00 0.00 0.00 2.52
822 978 3.274288 CCAGCAAACTACTCCAGATTCC 58.726 50.000 0.00 0.00 0.00 3.01
823 979 3.274288 CAGCAAACTACTCCAGATTCCC 58.726 50.000 0.00 0.00 0.00 3.97
824 980 3.054802 CAGCAAACTACTCCAGATTCCCT 60.055 47.826 0.00 0.00 0.00 4.20
825 981 3.198853 AGCAAACTACTCCAGATTCCCTC 59.801 47.826 0.00 0.00 0.00 4.30
826 982 3.055094 GCAAACTACTCCAGATTCCCTCA 60.055 47.826 0.00 0.00 0.00 3.86
827 983 4.565652 GCAAACTACTCCAGATTCCCTCAA 60.566 45.833 0.00 0.00 0.00 3.02
828 984 5.560724 CAAACTACTCCAGATTCCCTCAAA 58.439 41.667 0.00 0.00 0.00 2.69
829 985 5.843019 AACTACTCCAGATTCCCTCAAAA 57.157 39.130 0.00 0.00 0.00 2.44
830 986 5.843019 ACTACTCCAGATTCCCTCAAAAA 57.157 39.130 0.00 0.00 0.00 1.94
855 1011 5.546526 AGAAGAAGAAGCAAACTACTCCAG 58.453 41.667 0.00 0.00 0.00 3.86
866 1022 3.305398 ACTACTCCAGAAAGAAGCACG 57.695 47.619 0.00 0.00 0.00 5.34
915 1072 2.034066 TTCTCCGCCCAAAGCCAG 59.966 61.111 0.00 0.00 38.78 4.85
945 1102 0.991344 CCGCCATCGCATTTCAAAAC 59.009 50.000 0.00 0.00 34.03 2.43
972 1129 4.697756 CCAAACCCTCGCAGCCGA 62.698 66.667 0.00 0.00 42.01 5.54
974 1131 1.153449 CAAACCCTCGCAGCCGATA 60.153 57.895 0.00 0.00 43.47 2.92
1007 1164 4.101448 ACCTGCCTCCATGGACGC 62.101 66.667 24.12 24.12 38.35 5.19
1012 1169 3.151710 CCTCCATGGACGCCGGTA 61.152 66.667 11.44 0.00 38.35 4.02
1019 1176 3.384532 GGACGCCGGTAACCCTGA 61.385 66.667 1.90 0.00 0.00 3.86
1226 1383 1.418334 CTCCACTATGTCCTCCCCAG 58.582 60.000 0.00 0.00 0.00 4.45
1227 1384 0.691078 TCCACTATGTCCTCCCCAGC 60.691 60.000 0.00 0.00 0.00 4.85
1244 1401 4.148825 CCCGCCCTTCGTCTCCAG 62.149 72.222 0.00 0.00 36.19 3.86
1520 1761 3.770040 CGAGTCCGCCATCACCCA 61.770 66.667 0.00 0.00 0.00 4.51
2016 2271 3.072038 GGGTCATCATCTGGACATCATCA 59.928 47.826 0.00 0.00 35.74 3.07
2190 2455 8.682936 ATATCTATGTCAATGGGTGAACTTTC 57.317 34.615 0.00 0.00 38.23 2.62
2226 2500 4.704833 TGCAGGCTGGGACGAAGC 62.705 66.667 17.64 0.00 40.06 3.86
2422 2696 9.366216 TGTATCTGTAATTCTGTATGTGTTGTC 57.634 33.333 0.00 0.00 0.00 3.18
2458 2750 7.047891 TGTGGAGCTGAATAAGTATTTACTGG 58.952 38.462 0.00 0.00 36.50 4.00
2466 3074 8.259049 TGAATAAGTATTTACTGGTTTCACCG 57.741 34.615 0.00 0.00 42.58 4.94
2486 3094 3.435671 CCGTTTTACAGTCCAATGAGACC 59.564 47.826 0.00 0.00 37.49 3.85
2489 3097 3.587797 TTACAGTCCAATGAGACCGAC 57.412 47.619 0.00 0.00 37.49 4.79
2510 3165 3.763671 CCCACAGGCAAGGTCAAC 58.236 61.111 0.00 0.00 0.00 3.18
2511 3166 1.152777 CCCACAGGCAAGGTCAACA 60.153 57.895 0.00 0.00 0.00 3.33
2512 3167 0.754957 CCCACAGGCAAGGTCAACAA 60.755 55.000 0.00 0.00 0.00 2.83
2513 3168 0.385390 CCACAGGCAAGGTCAACAAC 59.615 55.000 0.00 0.00 0.00 3.32
2514 3169 1.102154 CACAGGCAAGGTCAACAACA 58.898 50.000 0.00 0.00 0.00 3.33
2515 3170 1.476085 CACAGGCAAGGTCAACAACAA 59.524 47.619 0.00 0.00 0.00 2.83
2516 3171 1.750778 ACAGGCAAGGTCAACAACAAG 59.249 47.619 0.00 0.00 0.00 3.16
2517 3172 1.750778 CAGGCAAGGTCAACAACAAGT 59.249 47.619 0.00 0.00 0.00 3.16
2518 3173 2.166254 CAGGCAAGGTCAACAACAAGTT 59.834 45.455 0.00 0.00 42.42 2.66
2519 3174 2.427095 AGGCAAGGTCAACAACAAGTTC 59.573 45.455 0.00 0.00 38.74 3.01
2520 3175 2.427095 GGCAAGGTCAACAACAAGTTCT 59.573 45.455 0.00 0.00 38.74 3.01
2521 3176 3.438360 GCAAGGTCAACAACAAGTTCTG 58.562 45.455 0.00 0.00 38.74 3.02
2522 3177 3.734902 GCAAGGTCAACAACAAGTTCTGG 60.735 47.826 0.00 0.00 38.74 3.86
2523 3178 2.024414 AGGTCAACAACAAGTTCTGGC 58.976 47.619 0.00 0.00 38.74 4.85
2524 3179 1.748493 GGTCAACAACAAGTTCTGGCA 59.252 47.619 0.00 0.00 38.74 4.92
2525 3180 2.479560 GGTCAACAACAAGTTCTGGCAC 60.480 50.000 0.00 0.00 38.74 5.01
2526 3181 1.400142 TCAACAACAAGTTCTGGCACG 59.600 47.619 0.00 0.00 38.74 5.34
2527 3182 1.400142 CAACAACAAGTTCTGGCACGA 59.600 47.619 0.00 0.00 38.74 4.35
2528 3183 1.299541 ACAACAAGTTCTGGCACGAG 58.700 50.000 0.00 0.00 0.00 4.18
2529 3184 0.588252 CAACAAGTTCTGGCACGAGG 59.412 55.000 0.00 0.00 0.00 4.63
2530 3185 1.166531 AACAAGTTCTGGCACGAGGC 61.167 55.000 0.00 0.00 43.74 4.70
2543 3198 4.933064 GAGGCCGGCGACATCGAG 62.933 72.222 22.54 0.00 43.02 4.04
2547 3202 4.794439 CCGGCGACATCGAGTGCA 62.794 66.667 9.30 0.00 43.02 4.57
2548 3203 2.583319 CGGCGACATCGAGTGCAT 60.583 61.111 0.00 0.00 43.02 3.96
2549 3204 2.580470 CGGCGACATCGAGTGCATC 61.580 63.158 0.00 0.00 43.02 3.91
2550 3205 2.240500 GGCGACATCGAGTGCATCC 61.241 63.158 5.26 0.00 43.02 3.51
2551 3206 1.519234 GCGACATCGAGTGCATCCA 60.519 57.895 5.26 0.00 43.02 3.41
2552 3207 1.485838 GCGACATCGAGTGCATCCAG 61.486 60.000 5.26 0.00 43.02 3.86
2553 3208 0.179127 CGACATCGAGTGCATCCAGT 60.179 55.000 0.00 0.00 43.02 4.00
2554 3209 1.565305 GACATCGAGTGCATCCAGTC 58.435 55.000 0.00 0.00 37.93 3.51
2765 3467 1.510480 GCTGTTCGCTGGTGCTCTTT 61.510 55.000 0.00 0.00 36.97 2.52
2875 3577 2.033141 TGCTCTTCAGGGCTGCAC 59.967 61.111 0.50 0.00 0.00 4.57
2884 3586 3.695606 GGGCTGCACCGTCTGAGA 61.696 66.667 0.50 0.00 40.62 3.27
2925 3632 2.155279 GACTTGGAGAGAGGTTTTGGC 58.845 52.381 0.00 0.00 0.00 4.52
2942 3649 1.076727 GCTTTTGTACCAGGGGCCT 59.923 57.895 0.84 0.00 0.00 5.19
2963 3670 5.048504 GCCTTTTTGAGTTCATCATCAGACA 60.049 40.000 0.00 0.00 37.89 3.41
2965 3672 7.600065 CCTTTTTGAGTTCATCATCAGACAAT 58.400 34.615 0.00 0.00 37.89 2.71
3035 3742 1.448069 TGCGGTGTCTACCTGCAAA 59.552 52.632 11.51 0.00 46.07 3.68
3052 3759 4.362279 TGCAAAGCACTGTTTTGATTCTC 58.638 39.130 19.30 4.78 37.65 2.87
3063 3770 4.405358 TGTTTTGATTCTCAAGCTTGGGTT 59.595 37.500 25.33 14.51 37.70 4.11
3064 3771 4.589216 TTTGATTCTCAAGCTTGGGTTG 57.411 40.909 25.33 13.37 41.65 3.77
3065 3772 3.228188 TGATTCTCAAGCTTGGGTTGT 57.772 42.857 25.33 12.70 41.15 3.32
3066 3773 3.565307 TGATTCTCAAGCTTGGGTTGTT 58.435 40.909 25.33 9.21 41.15 2.83
3067 3774 3.318839 TGATTCTCAAGCTTGGGTTGTTG 59.681 43.478 25.33 7.97 41.15 3.33
3068 3775 2.727123 TCTCAAGCTTGGGTTGTTGA 57.273 45.000 25.33 2.37 41.15 3.18
3069 3776 3.011566 TCTCAAGCTTGGGTTGTTGAA 57.988 42.857 25.33 1.58 41.15 2.69
3070 3777 3.360867 TCTCAAGCTTGGGTTGTTGAAA 58.639 40.909 25.33 0.77 41.15 2.69
3071 3778 3.130340 TCTCAAGCTTGGGTTGTTGAAAC 59.870 43.478 25.33 0.00 41.15 2.78
3072 3779 2.167487 TCAAGCTTGGGTTGTTGAAACC 59.833 45.455 25.73 0.00 41.15 3.27
3073 3780 2.159179 AGCTTGGGTTGTTGAAACCT 57.841 45.000 7.17 0.00 40.04 3.50
3074 3781 1.756538 AGCTTGGGTTGTTGAAACCTG 59.243 47.619 7.17 0.59 40.04 4.00
3075 3782 1.806247 GCTTGGGTTGTTGAAACCTGC 60.806 52.381 7.17 6.09 40.04 4.85
3076 3783 1.480137 CTTGGGTTGTTGAAACCTGCA 59.520 47.619 7.17 0.00 40.04 4.41
3077 3784 1.561643 TGGGTTGTTGAAACCTGCAA 58.438 45.000 7.17 0.00 40.04 4.08
3078 3785 2.114616 TGGGTTGTTGAAACCTGCAAT 58.885 42.857 7.17 0.00 40.04 3.56
3079 3786 2.503356 TGGGTTGTTGAAACCTGCAATT 59.497 40.909 7.17 0.00 40.04 2.32
3080 3787 3.054802 TGGGTTGTTGAAACCTGCAATTT 60.055 39.130 7.17 0.00 40.04 1.82
3081 3788 3.559655 GGGTTGTTGAAACCTGCAATTTC 59.440 43.478 13.70 13.70 40.15 2.17
3082 3789 4.441792 GGTTGTTGAAACCTGCAATTTCT 58.558 39.130 18.86 0.00 37.05 2.52
3083 3790 4.270808 GGTTGTTGAAACCTGCAATTTCTG 59.729 41.667 18.86 0.00 37.05 3.02
3095 3802 3.489180 CAATTTCTGCTGCTCTTCAGG 57.511 47.619 0.00 0.00 43.06 3.86
3096 3803 2.125773 ATTTCTGCTGCTCTTCAGGG 57.874 50.000 0.00 0.00 43.06 4.45
3097 3804 0.607489 TTTCTGCTGCTCTTCAGGGC 60.607 55.000 0.00 0.00 43.06 5.19
3098 3805 1.486997 TTCTGCTGCTCTTCAGGGCT 61.487 55.000 0.00 0.00 43.06 5.19
3099 3806 1.745864 CTGCTGCTCTTCAGGGCTG 60.746 63.158 0.00 0.33 43.06 4.85
3100 3807 3.132801 GCTGCTCTTCAGGGCTGC 61.133 66.667 14.00 14.00 43.06 5.25
3101 3808 2.350134 CTGCTCTTCAGGGCTGCA 59.650 61.111 0.50 0.00 39.15 4.41
3102 3809 1.077644 CTGCTCTTCAGGGCTGCAT 60.078 57.895 0.50 0.00 39.15 3.96
3103 3810 1.077930 TGCTCTTCAGGGCTGCATC 60.078 57.895 0.50 0.00 0.00 3.91
3104 3811 1.077930 GCTCTTCAGGGCTGCATCA 60.078 57.895 0.50 0.00 0.00 3.07
3105 3812 0.465824 GCTCTTCAGGGCTGCATCAT 60.466 55.000 0.50 0.00 0.00 2.45
3106 3813 1.595466 CTCTTCAGGGCTGCATCATC 58.405 55.000 0.50 0.00 0.00 2.92
3107 3814 1.141254 CTCTTCAGGGCTGCATCATCT 59.859 52.381 0.50 0.00 0.00 2.90
3108 3815 1.134189 TCTTCAGGGCTGCATCATCTG 60.134 52.381 0.50 0.00 0.00 2.90
3109 3816 0.913924 TTCAGGGCTGCATCATCTGA 59.086 50.000 0.50 8.22 33.30 3.27
3110 3817 0.468648 TCAGGGCTGCATCATCTGAG 59.531 55.000 0.50 0.00 31.73 3.35
3111 3818 0.535328 CAGGGCTGCATCATCTGAGG 60.535 60.000 0.50 0.00 0.00 3.86
3112 3819 0.987081 AGGGCTGCATCATCTGAGGT 60.987 55.000 0.50 0.00 0.00 3.85
3113 3820 0.818445 GGGCTGCATCATCTGAGGTG 60.818 60.000 0.50 0.00 0.00 4.00
3114 3821 0.107312 GGCTGCATCATCTGAGGTGT 60.107 55.000 0.50 0.00 0.00 4.16
3115 3822 1.681166 GGCTGCATCATCTGAGGTGTT 60.681 52.381 0.50 0.00 0.00 3.32
3116 3823 2.420547 GGCTGCATCATCTGAGGTGTTA 60.421 50.000 0.50 0.00 0.00 2.41
3117 3824 3.273434 GCTGCATCATCTGAGGTGTTAA 58.727 45.455 0.00 0.00 0.00 2.01
3118 3825 3.064545 GCTGCATCATCTGAGGTGTTAAC 59.935 47.826 0.00 0.00 0.00 2.01
3119 3826 4.511527 CTGCATCATCTGAGGTGTTAACT 58.488 43.478 7.22 0.00 0.00 2.24
3123 3830 5.412594 GCATCATCTGAGGTGTTAACTGAAA 59.587 40.000 7.22 0.00 0.00 2.69
3124 3831 6.621596 GCATCATCTGAGGTGTTAACTGAAAC 60.622 42.308 7.22 0.00 0.00 2.78
3128 3835 5.123227 TCTGAGGTGTTAACTGAAACTTGG 58.877 41.667 7.22 0.00 0.00 3.61
3155 3862 5.304357 AGAGGTTTTGATTTTTGTACCAGGG 59.696 40.000 0.00 0.00 0.00 4.45
3156 3863 4.062293 GGTTTTGATTTTTGTACCAGGGC 58.938 43.478 0.00 0.00 0.00 5.19
3157 3864 4.062293 GTTTTGATTTTTGTACCAGGGCC 58.938 43.478 0.00 0.00 0.00 5.80
3158 3865 1.931635 TGATTTTTGTACCAGGGCCC 58.068 50.000 16.46 16.46 0.00 5.80
3159 3866 1.431243 TGATTTTTGTACCAGGGCCCT 59.569 47.619 22.28 22.28 0.00 5.19
3160 3867 2.158234 TGATTTTTGTACCAGGGCCCTT 60.158 45.455 26.10 12.36 0.00 3.95
3161 3868 2.480642 TTTTTGTACCAGGGCCCTTT 57.519 45.000 26.10 15.54 0.00 3.11
3162 3869 2.480642 TTTTGTACCAGGGCCCTTTT 57.519 45.000 26.10 15.10 0.00 2.27
3163 3870 1.710816 TTTGTACCAGGGCCCTTTTG 58.289 50.000 26.10 16.75 0.00 2.44
3164 3871 0.854218 TTGTACCAGGGCCCTTTTGA 59.146 50.000 26.10 4.68 0.00 2.69
3165 3872 0.854218 TGTACCAGGGCCCTTTTGAA 59.146 50.000 26.10 5.15 0.00 2.69
3166 3873 1.203001 TGTACCAGGGCCCTTTTGAAG 60.203 52.381 26.10 10.02 0.00 3.02
3167 3874 0.251608 TACCAGGGCCCTTTTGAAGC 60.252 55.000 26.10 0.00 0.00 3.86
3168 3875 1.228988 CCAGGGCCCTTTTGAAGCT 60.229 57.895 26.10 0.00 0.00 3.74
3169 3876 0.833409 CCAGGGCCCTTTTGAAGCTT 60.833 55.000 26.10 0.00 0.00 3.74
3170 3877 1.549950 CCAGGGCCCTTTTGAAGCTTA 60.550 52.381 26.10 0.00 0.00 3.09
3171 3878 2.247358 CAGGGCCCTTTTGAAGCTTAA 58.753 47.619 26.10 0.00 0.00 1.85
3172 3879 2.833943 CAGGGCCCTTTTGAAGCTTAAT 59.166 45.455 26.10 0.00 0.00 1.40
3173 3880 3.261643 CAGGGCCCTTTTGAAGCTTAATT 59.738 43.478 26.10 0.00 0.00 1.40
3174 3881 3.909995 AGGGCCCTTTTGAAGCTTAATTT 59.090 39.130 22.28 0.00 0.00 1.82
3175 3882 5.046663 CAGGGCCCTTTTGAAGCTTAATTTA 60.047 40.000 26.10 0.00 0.00 1.40
3176 3883 5.726308 AGGGCCCTTTTGAAGCTTAATTTAT 59.274 36.000 22.28 0.00 0.00 1.40
3177 3884 6.900743 AGGGCCCTTTTGAAGCTTAATTTATA 59.099 34.615 22.28 0.00 0.00 0.98
3178 3885 7.568738 AGGGCCCTTTTGAAGCTTAATTTATAT 59.431 33.333 22.28 0.00 0.00 0.86
3179 3886 8.866093 GGGCCCTTTTGAAGCTTAATTTATATA 58.134 33.333 17.04 0.00 0.00 0.86
3209 3916 4.470334 AAAAACATGGTTTGTGCTCTGT 57.530 36.364 10.04 0.00 38.99 3.41
3210 3917 4.470334 AAAACATGGTTTGTGCTCTGTT 57.530 36.364 8.22 0.00 38.99 3.16
3211 3918 3.441496 AACATGGTTTGTGCTCTGTTG 57.559 42.857 0.00 0.00 38.99 3.33
3212 3919 1.067516 ACATGGTTTGTGCTCTGTTGC 59.932 47.619 0.00 0.00 37.11 4.17
3213 3920 0.311790 ATGGTTTGTGCTCTGTTGCG 59.688 50.000 0.00 0.00 35.36 4.85
3214 3921 1.008538 GGTTTGTGCTCTGTTGCGG 60.009 57.895 0.00 0.00 35.36 5.69
3215 3922 1.724582 GGTTTGTGCTCTGTTGCGGT 61.725 55.000 0.00 0.00 35.36 5.68
3216 3923 0.941542 GTTTGTGCTCTGTTGCGGTA 59.058 50.000 0.00 0.00 35.36 4.02
3217 3924 1.535462 GTTTGTGCTCTGTTGCGGTAT 59.465 47.619 0.00 0.00 35.36 2.73
3218 3925 1.438651 TTGTGCTCTGTTGCGGTATC 58.561 50.000 0.00 0.00 35.36 2.24
3219 3926 0.608130 TGTGCTCTGTTGCGGTATCT 59.392 50.000 0.00 0.00 35.36 1.98
3220 3927 1.822371 TGTGCTCTGTTGCGGTATCTA 59.178 47.619 0.00 0.00 35.36 1.98
3221 3928 2.194271 GTGCTCTGTTGCGGTATCTAC 58.806 52.381 0.00 0.00 35.36 2.59
3222 3929 1.136305 TGCTCTGTTGCGGTATCTACC 59.864 52.381 0.00 0.00 42.98 3.18
3223 3930 1.409427 GCTCTGTTGCGGTATCTACCT 59.591 52.381 4.93 0.00 44.25 3.08
3224 3931 2.159085 GCTCTGTTGCGGTATCTACCTT 60.159 50.000 4.93 0.00 44.25 3.50
3225 3932 3.707793 CTCTGTTGCGGTATCTACCTTC 58.292 50.000 4.93 0.00 44.25 3.46
3226 3933 3.093814 TCTGTTGCGGTATCTACCTTCA 58.906 45.455 4.93 0.53 44.25 3.02
3227 3934 3.512329 TCTGTTGCGGTATCTACCTTCAA 59.488 43.478 4.93 6.00 44.25 2.69
3228 3935 3.857052 TGTTGCGGTATCTACCTTCAAG 58.143 45.455 4.93 0.00 44.25 3.02
3229 3936 3.195661 GTTGCGGTATCTACCTTCAAGG 58.804 50.000 0.22 0.22 44.25 3.61
3230 3937 1.138266 TGCGGTATCTACCTTCAAGGC 59.862 52.381 2.20 0.76 44.25 4.35
3231 3938 1.138266 GCGGTATCTACCTTCAAGGCA 59.862 52.381 2.20 0.00 44.25 4.75
3232 3939 2.822764 CGGTATCTACCTTCAAGGCAC 58.177 52.381 2.20 0.00 44.25 5.01
3233 3940 2.431057 CGGTATCTACCTTCAAGGCACT 59.569 50.000 2.20 0.00 44.25 4.40
3234 3941 3.738281 CGGTATCTACCTTCAAGGCACTG 60.738 52.174 2.20 0.00 44.25 3.66
3235 3942 3.197983 GGTATCTACCTTCAAGGCACTGT 59.802 47.826 2.20 0.00 43.10 3.55
3236 3943 4.323562 GGTATCTACCTTCAAGGCACTGTT 60.324 45.833 2.20 0.00 43.10 3.16
3237 3944 3.402628 TCTACCTTCAAGGCACTGTTC 57.597 47.619 2.20 0.00 39.63 3.18
3238 3945 2.972713 TCTACCTTCAAGGCACTGTTCT 59.027 45.455 2.20 0.00 39.63 3.01
3239 3946 1.972872 ACCTTCAAGGCACTGTTCTG 58.027 50.000 2.20 0.00 39.63 3.02
3240 3947 1.490490 ACCTTCAAGGCACTGTTCTGA 59.510 47.619 2.20 0.00 39.63 3.27
3241 3948 2.107204 ACCTTCAAGGCACTGTTCTGAT 59.893 45.455 2.20 0.00 39.63 2.90
3242 3949 3.152341 CCTTCAAGGCACTGTTCTGATT 58.848 45.455 0.00 0.00 40.86 2.57
3243 3950 3.190118 CCTTCAAGGCACTGTTCTGATTC 59.810 47.826 0.00 0.00 40.86 2.52
3244 3951 3.777106 TCAAGGCACTGTTCTGATTCT 57.223 42.857 0.00 0.00 40.86 2.40
3245 3952 4.090761 TCAAGGCACTGTTCTGATTCTT 57.909 40.909 0.00 0.00 40.86 2.52
3246 3953 5.227569 TCAAGGCACTGTTCTGATTCTTA 57.772 39.130 0.00 0.00 40.86 2.10
3247 3954 5.240891 TCAAGGCACTGTTCTGATTCTTAG 58.759 41.667 0.00 0.00 40.86 2.18
3248 3955 3.604582 AGGCACTGTTCTGATTCTTAGC 58.395 45.455 0.00 0.00 37.18 3.09
3249 3956 3.262915 AGGCACTGTTCTGATTCTTAGCT 59.737 43.478 0.00 0.00 37.18 3.32
3250 3957 4.006319 GGCACTGTTCTGATTCTTAGCTT 58.994 43.478 0.00 0.00 0.00 3.74
3251 3958 4.142730 GGCACTGTTCTGATTCTTAGCTTG 60.143 45.833 0.00 0.00 0.00 4.01
3252 3959 4.142730 GCACTGTTCTGATTCTTAGCTTGG 60.143 45.833 0.00 0.00 0.00 3.61
3253 3960 4.394300 CACTGTTCTGATTCTTAGCTTGGG 59.606 45.833 0.00 0.00 0.00 4.12
3254 3961 4.042187 ACTGTTCTGATTCTTAGCTTGGGT 59.958 41.667 0.00 0.00 0.00 4.51
3264 3971 1.234821 TAGCTTGGGTTGCTGAAACG 58.765 50.000 0.00 0.00 41.32 3.60
3335 4042 1.338011 CGTGGGCCATTTCATGCTTTT 60.338 47.619 10.70 0.00 0.00 2.27
3344 4051 7.336679 GGGCCATTTCATGCTTTTACTAATTTT 59.663 33.333 4.39 0.00 0.00 1.82
3400 4267 1.747355 CTGATGTGCCCTGGTTGATTC 59.253 52.381 0.00 0.00 0.00 2.52
3416 4283 1.596727 GATTCTGCTCGTCTGGAATGC 59.403 52.381 0.00 0.00 0.00 3.56
3428 4295 4.578516 CGTCTGGAATGCCAATTTACCATA 59.421 41.667 0.00 0.00 45.41 2.74
3429 4296 5.505654 CGTCTGGAATGCCAATTTACCATAC 60.506 44.000 0.00 0.00 45.41 2.39
3472 4339 4.363999 GTCTTGATGAGTAGGGATTCACG 58.636 47.826 0.00 0.00 0.00 4.35
3524 4391 6.853720 TGTCTATCTTAACTTCTGAAGGTCG 58.146 40.000 20.61 9.80 0.00 4.79
3581 4448 0.375803 GTTTGTCACGAACAGCGGTT 59.624 50.000 0.50 0.50 46.49 4.44
3617 4484 4.191243 TGGAACTCCACTCGAGCA 57.809 55.556 13.61 0.00 43.01 4.26
3667 4534 2.739287 CGGTGCCGCGGAACTTTA 60.739 61.111 34.54 7.37 0.00 1.85
3823 4690 4.623171 GCCTATGATCCTATTGGGTTACCG 60.623 50.000 0.00 0.00 40.75 4.02
3848 4715 6.587226 GTCAATTGTGTTATGTGACATTGCAT 59.413 34.615 2.29 0.00 38.74 3.96
3852 4719 6.566197 TGTGTTATGTGACATTGCATTGTA 57.434 33.333 13.89 0.00 0.00 2.41
3886 4753 4.317530 AGTAGGAAAAAGGGGGTTGATC 57.682 45.455 0.00 0.00 0.00 2.92
4016 4883 0.708370 CGAGTTTCGTGATGTCACCG 59.292 55.000 7.51 3.69 43.66 4.94
4019 4886 0.584396 GTTTCGTGATGTCACCGCAA 59.416 50.000 7.51 0.00 43.66 4.85
4021 4888 1.300481 TTCGTGATGTCACCGCAAAA 58.700 45.000 7.51 0.00 43.66 2.44
4023 4890 0.586319 CGTGATGTCACCGCAAAACT 59.414 50.000 7.51 0.00 43.66 2.66
4028 4895 1.581934 TGTCACCGCAAAACTCTGAG 58.418 50.000 2.45 2.45 0.00 3.35
4054 4921 8.763049 AAAATGCAACTTAGAAGCCTTAATTC 57.237 30.769 0.00 0.00 0.00 2.17
4071 4938 3.715628 ATTCACAACCTTGCTCAACAC 57.284 42.857 0.00 0.00 0.00 3.32
4081 4948 4.702131 ACCTTGCTCAACACCAGATAAATC 59.298 41.667 0.00 0.00 0.00 2.17
4087 4954 6.072508 TGCTCAACACCAGATAAATCAGTTTC 60.073 38.462 0.00 0.00 0.00 2.78
4098 4965 7.115378 CAGATAAATCAGTTTCACAAAGCCAAC 59.885 37.037 0.00 0.00 0.00 3.77
4125 4992 2.555757 GCATGGATATTTGGCTCCTCAC 59.444 50.000 0.00 0.00 32.47 3.51
4149 5017 5.801350 TTTCAAGAATAAGATGCGTCCTG 57.199 39.130 1.23 0.00 0.00 3.86
4176 5044 8.774890 AAGCATCAATCAGTAGATAGCTATTG 57.225 34.615 7.87 4.26 36.11 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
331 432 9.500864 CGAAAAATTGTTCACAAATTCCAAAAT 57.499 25.926 9.05 0.00 39.55 1.82
337 438 8.105135 TCGTTTCGAAAAATTGTTCACAAATTC 58.895 29.630 13.10 2.21 34.34 2.17
406 530 9.559958 ACTTGTTCGCTAATTTCAAAGAATATG 57.440 29.630 0.00 0.00 0.00 1.78
606 752 8.772250 AGATTCTAGAATGTTCCTGAACCATTA 58.228 33.333 22.61 0.00 40.46 1.90
661 811 4.546570 GGTTTTGTGTACATTCTGGAAGC 58.453 43.478 0.00 0.00 0.00 3.86
674 824 0.467290 ACAGGCATCCGGTTTTGTGT 60.467 50.000 0.00 0.00 0.00 3.72
676 826 1.073284 AGTACAGGCATCCGGTTTTGT 59.927 47.619 0.00 3.30 33.35 2.83
728 878 3.891977 AGACCAGATCAAAGCTAGCGATA 59.108 43.478 9.55 0.00 0.00 2.92
764 916 3.512680 GCATTCTGCGTCAAGTAGTAGT 58.487 45.455 0.00 0.00 31.71 2.73
804 960 3.055094 TGAGGGAATCTGGAGTAGTTTGC 60.055 47.826 0.00 0.00 0.00 3.68
805 961 4.826274 TGAGGGAATCTGGAGTAGTTTG 57.174 45.455 0.00 0.00 0.00 2.93
806 962 5.843019 TTTGAGGGAATCTGGAGTAGTTT 57.157 39.130 0.00 0.00 0.00 2.66
807 963 5.843019 TTTTGAGGGAATCTGGAGTAGTT 57.157 39.130 0.00 0.00 0.00 2.24
808 964 5.843019 TTTTTGAGGGAATCTGGAGTAGT 57.157 39.130 0.00 0.00 0.00 2.73
828 984 7.339466 TGGAGTAGTTTGCTTCTTCTTCTTTTT 59.661 33.333 0.00 0.00 0.00 1.94
829 985 6.828785 TGGAGTAGTTTGCTTCTTCTTCTTTT 59.171 34.615 0.00 0.00 0.00 2.27
830 986 6.357367 TGGAGTAGTTTGCTTCTTCTTCTTT 58.643 36.000 0.00 0.00 0.00 2.52
831 987 5.930135 TGGAGTAGTTTGCTTCTTCTTCTT 58.070 37.500 0.00 0.00 0.00 2.52
832 988 5.305644 TCTGGAGTAGTTTGCTTCTTCTTCT 59.694 40.000 0.00 0.00 0.00 2.85
833 989 5.542779 TCTGGAGTAGTTTGCTTCTTCTTC 58.457 41.667 0.00 0.00 0.00 2.87
834 990 5.552870 TCTGGAGTAGTTTGCTTCTTCTT 57.447 39.130 0.00 0.00 0.00 2.52
835 991 5.552870 TTCTGGAGTAGTTTGCTTCTTCT 57.447 39.130 0.00 0.00 0.00 2.85
836 992 5.992217 TCTTTCTGGAGTAGTTTGCTTCTTC 59.008 40.000 0.00 0.00 0.00 2.87
837 993 5.930135 TCTTTCTGGAGTAGTTTGCTTCTT 58.070 37.500 0.00 0.00 0.00 2.52
838 994 5.552870 TCTTTCTGGAGTAGTTTGCTTCT 57.447 39.130 0.00 0.00 0.00 2.85
839 995 5.334491 GCTTCTTTCTGGAGTAGTTTGCTTC 60.334 44.000 0.00 0.00 0.00 3.86
840 996 4.517075 GCTTCTTTCTGGAGTAGTTTGCTT 59.483 41.667 0.00 0.00 0.00 3.91
841 997 4.068599 GCTTCTTTCTGGAGTAGTTTGCT 58.931 43.478 0.00 0.00 0.00 3.91
842 998 3.815401 TGCTTCTTTCTGGAGTAGTTTGC 59.185 43.478 0.00 0.00 0.00 3.68
843 999 4.084328 CGTGCTTCTTTCTGGAGTAGTTTG 60.084 45.833 0.00 0.00 0.00 2.93
844 1000 4.058817 CGTGCTTCTTTCTGGAGTAGTTT 58.941 43.478 0.00 0.00 0.00 2.66
845 1001 3.654414 CGTGCTTCTTTCTGGAGTAGTT 58.346 45.455 0.00 0.00 0.00 2.24
846 1002 2.610727 GCGTGCTTCTTTCTGGAGTAGT 60.611 50.000 0.00 0.00 0.00 2.73
847 1003 1.996191 GCGTGCTTCTTTCTGGAGTAG 59.004 52.381 0.00 0.00 0.00 2.57
848 1004 1.618837 AGCGTGCTTCTTTCTGGAGTA 59.381 47.619 0.00 0.00 0.00 2.59
849 1005 0.394565 AGCGTGCTTCTTTCTGGAGT 59.605 50.000 0.00 0.00 0.00 3.85
850 1006 0.795085 CAGCGTGCTTCTTTCTGGAG 59.205 55.000 0.00 0.00 0.00 3.86
851 1007 1.230635 GCAGCGTGCTTCTTTCTGGA 61.231 55.000 0.00 0.00 40.96 3.86
915 1072 1.548986 CGATGGCGGAAGAAATTTGC 58.451 50.000 0.00 0.00 0.00 3.68
945 1102 0.617535 GAGGGTTTGGGGATTTGGGG 60.618 60.000 0.00 0.00 0.00 4.96
997 1154 2.580276 GTTACCGGCGTCCATGGA 59.420 61.111 11.44 11.44 0.00 3.41
1007 1164 2.267961 GGTGCTCAGGGTTACCGG 59.732 66.667 0.00 0.00 43.47 5.28
1227 1384 4.148825 CTGGAGACGAAGGGCGGG 62.149 72.222 0.00 0.00 46.49 6.13
1520 1761 4.796231 GGTGCGCGTCGAGGATGT 62.796 66.667 8.43 0.00 0.00 3.06
2190 2455 2.481185 GCAATGCACCAATTTTGTGAGG 59.519 45.455 0.00 0.00 0.00 3.86
2226 2500 3.673484 CGTGGTGCTTGGGCTTGG 61.673 66.667 0.00 0.00 39.59 3.61
2422 2696 1.002792 CAGCTCCACAATGATGCATCG 60.003 52.381 21.34 10.11 0.00 3.84
2458 2750 4.619437 TTGGACTGTAAAACGGTGAAAC 57.381 40.909 0.00 0.00 37.93 2.78
2466 3074 4.151867 GTCGGTCTCATTGGACTGTAAAAC 59.848 45.833 11.48 2.92 41.75 2.43
2505 3113 2.791158 CGTGCCAGAACTTGTTGTTGAC 60.791 50.000 0.00 0.00 39.30 3.18
2508 3163 1.670811 CTCGTGCCAGAACTTGTTGTT 59.329 47.619 0.00 0.00 42.38 2.83
2509 3164 1.299541 CTCGTGCCAGAACTTGTTGT 58.700 50.000 0.00 0.00 0.00 3.32
2510 3165 0.588252 CCTCGTGCCAGAACTTGTTG 59.412 55.000 0.00 0.00 0.00 3.33
2511 3166 1.166531 GCCTCGTGCCAGAACTTGTT 61.167 55.000 0.00 0.00 0.00 2.83
2512 3167 1.598130 GCCTCGTGCCAGAACTTGT 60.598 57.895 0.00 0.00 0.00 3.16
2513 3168 3.257933 GCCTCGTGCCAGAACTTG 58.742 61.111 0.00 0.00 0.00 3.16
2526 3181 4.933064 CTCGATGTCGCCGGCCTC 62.933 72.222 23.46 14.83 39.60 4.70
2530 3185 4.794439 TGCACTCGATGTCGCCGG 62.794 66.667 0.00 0.00 39.60 6.13
2531 3186 2.580470 GATGCACTCGATGTCGCCG 61.580 63.158 0.00 0.00 39.60 6.46
2532 3187 2.240500 GGATGCACTCGATGTCGCC 61.241 63.158 0.00 0.00 39.60 5.54
2533 3188 1.485838 CTGGATGCACTCGATGTCGC 61.486 60.000 0.00 0.00 39.60 5.19
2534 3189 0.179127 ACTGGATGCACTCGATGTCG 60.179 55.000 0.00 0.00 41.45 4.35
2535 3190 1.134995 TGACTGGATGCACTCGATGTC 60.135 52.381 0.00 0.00 0.00 3.06
2536 3191 0.897621 TGACTGGATGCACTCGATGT 59.102 50.000 0.00 0.00 0.00 3.06
2537 3192 1.284657 GTGACTGGATGCACTCGATG 58.715 55.000 0.00 0.00 32.44 3.84
2538 3193 0.897621 TGTGACTGGATGCACTCGAT 59.102 50.000 0.00 0.00 36.05 3.59
2539 3194 0.038251 GTGTGACTGGATGCACTCGA 60.038 55.000 0.00 0.00 36.05 4.04
2540 3195 1.016130 GGTGTGACTGGATGCACTCG 61.016 60.000 0.00 0.00 36.05 4.18
2541 3196 0.322975 AGGTGTGACTGGATGCACTC 59.677 55.000 0.00 0.00 36.05 3.51
2542 3197 0.767375 AAGGTGTGACTGGATGCACT 59.233 50.000 0.00 0.00 36.05 4.40
2543 3198 2.472695 TAAGGTGTGACTGGATGCAC 57.527 50.000 0.00 0.00 35.63 4.57
2544 3199 2.875672 GCTTAAGGTGTGACTGGATGCA 60.876 50.000 4.29 0.00 0.00 3.96
2545 3200 1.740025 GCTTAAGGTGTGACTGGATGC 59.260 52.381 4.29 0.00 0.00 3.91
2546 3201 3.005554 CAGCTTAAGGTGTGACTGGATG 58.994 50.000 23.52 0.00 38.61 3.51
2547 3202 2.906389 TCAGCTTAAGGTGTGACTGGAT 59.094 45.455 28.63 0.00 43.46 3.41
2548 3203 2.325484 TCAGCTTAAGGTGTGACTGGA 58.675 47.619 28.63 9.71 43.46 3.86
2549 3204 2.839486 TCAGCTTAAGGTGTGACTGG 57.161 50.000 28.63 7.01 43.46 4.00
2550 3205 3.005554 CCATCAGCTTAAGGTGTGACTG 58.994 50.000 28.63 21.10 43.46 3.51
2551 3206 2.639839 ACCATCAGCTTAAGGTGTGACT 59.360 45.455 28.63 13.15 43.46 3.41
2552 3207 3.003480 GACCATCAGCTTAAGGTGTGAC 58.997 50.000 28.63 18.93 43.46 3.67
2553 3208 2.906389 AGACCATCAGCTTAAGGTGTGA 59.094 45.455 28.63 15.00 43.46 3.58
2554 3209 3.340814 AGACCATCAGCTTAAGGTGTG 57.659 47.619 28.63 24.14 43.46 3.82
2595 3297 2.762043 GAAGGAGAGCTCGCCCCT 60.762 66.667 30.31 22.69 36.39 4.79
2765 3467 0.596577 CCGTTTCGAGTGGACTCTCA 59.403 55.000 5.30 0.00 40.75 3.27
2875 3577 1.153745 CGGCCTTCTTCTCAGACGG 60.154 63.158 0.00 0.00 40.77 4.79
2884 3586 1.418637 TCAGTTAACACCGGCCTTCTT 59.581 47.619 8.61 0.00 0.00 2.52
2925 3632 2.009681 AAAGGCCCCTGGTACAAAAG 57.990 50.000 0.00 0.00 38.70 2.27
2942 3649 6.864685 GCATTGTCTGATGATGAACTCAAAAA 59.135 34.615 7.22 0.00 37.44 1.94
3052 3759 2.168313 AGGTTTCAACAACCCAAGCTTG 59.832 45.455 19.93 19.93 41.18 4.01
3075 3782 2.163815 CCCTGAAGAGCAGCAGAAATTG 59.836 50.000 0.00 0.00 43.50 2.32
3076 3783 2.444421 CCCTGAAGAGCAGCAGAAATT 58.556 47.619 0.00 0.00 43.50 1.82
3077 3784 1.954258 GCCCTGAAGAGCAGCAGAAAT 60.954 52.381 0.00 0.00 43.50 2.17
3078 3785 0.607489 GCCCTGAAGAGCAGCAGAAA 60.607 55.000 0.00 0.00 43.50 2.52
3079 3786 1.002868 GCCCTGAAGAGCAGCAGAA 60.003 57.895 0.00 0.00 43.50 3.02
3080 3787 1.917282 AGCCCTGAAGAGCAGCAGA 60.917 57.895 0.00 0.00 43.50 4.26
3081 3788 1.745864 CAGCCCTGAAGAGCAGCAG 60.746 63.158 0.00 0.00 43.50 4.24
3082 3789 2.350134 CAGCCCTGAAGAGCAGCA 59.650 61.111 0.00 0.00 43.50 4.41
3083 3790 3.132801 GCAGCCCTGAAGAGCAGC 61.133 66.667 0.00 0.00 43.50 5.25
3084 3791 1.077644 ATGCAGCCCTGAAGAGCAG 60.078 57.895 0.00 0.00 44.49 4.24
3085 3792 1.077930 GATGCAGCCCTGAAGAGCA 60.078 57.895 0.00 0.00 39.79 4.26
3086 3793 0.465824 ATGATGCAGCCCTGAAGAGC 60.466 55.000 0.00 0.00 0.00 4.09
3087 3794 1.141254 AGATGATGCAGCCCTGAAGAG 59.859 52.381 0.00 0.00 0.00 2.85
3088 3795 1.134189 CAGATGATGCAGCCCTGAAGA 60.134 52.381 14.02 0.00 0.00 2.87
3089 3796 1.134189 TCAGATGATGCAGCCCTGAAG 60.134 52.381 17.97 0.00 31.72 3.02
3090 3797 0.913924 TCAGATGATGCAGCCCTGAA 59.086 50.000 17.97 5.88 31.72 3.02
3091 3798 0.468648 CTCAGATGATGCAGCCCTGA 59.531 55.000 18.78 18.78 33.43 3.86
3092 3799 0.535328 CCTCAGATGATGCAGCCCTG 60.535 60.000 13.29 13.29 0.00 4.45
3093 3800 0.987081 ACCTCAGATGATGCAGCCCT 60.987 55.000 0.00 0.00 0.00 5.19
3094 3801 0.818445 CACCTCAGATGATGCAGCCC 60.818 60.000 0.00 0.00 0.00 5.19
3095 3802 0.107312 ACACCTCAGATGATGCAGCC 60.107 55.000 0.00 0.00 0.00 4.85
3096 3803 1.747709 AACACCTCAGATGATGCAGC 58.252 50.000 0.00 0.00 0.00 5.25
3097 3804 4.331992 CAGTTAACACCTCAGATGATGCAG 59.668 45.833 8.61 0.00 0.00 4.41
3098 3805 4.020307 TCAGTTAACACCTCAGATGATGCA 60.020 41.667 8.61 0.00 0.00 3.96
3099 3806 4.507710 TCAGTTAACACCTCAGATGATGC 58.492 43.478 8.61 0.00 0.00 3.91
3100 3807 6.652481 AGTTTCAGTTAACACCTCAGATGATG 59.348 38.462 8.61 0.00 0.00 3.07
3101 3808 6.773638 AGTTTCAGTTAACACCTCAGATGAT 58.226 36.000 8.61 0.00 0.00 2.45
3102 3809 6.174720 AGTTTCAGTTAACACCTCAGATGA 57.825 37.500 8.61 0.00 0.00 2.92
3103 3810 6.293626 CCAAGTTTCAGTTAACACCTCAGATG 60.294 42.308 8.61 0.00 0.00 2.90
3104 3811 5.765182 CCAAGTTTCAGTTAACACCTCAGAT 59.235 40.000 8.61 0.00 0.00 2.90
3105 3812 5.104693 TCCAAGTTTCAGTTAACACCTCAGA 60.105 40.000 8.61 0.00 0.00 3.27
3106 3813 5.123227 TCCAAGTTTCAGTTAACACCTCAG 58.877 41.667 8.61 0.00 0.00 3.35
3107 3814 5.105567 TCCAAGTTTCAGTTAACACCTCA 57.894 39.130 8.61 0.00 0.00 3.86
3108 3815 6.317893 TCTTTCCAAGTTTCAGTTAACACCTC 59.682 38.462 8.61 0.00 0.00 3.85
3109 3816 6.184789 TCTTTCCAAGTTTCAGTTAACACCT 58.815 36.000 8.61 0.00 0.00 4.00
3110 3817 6.445357 TCTTTCCAAGTTTCAGTTAACACC 57.555 37.500 8.61 0.00 0.00 4.16
3111 3818 6.095021 ACCTCTTTCCAAGTTTCAGTTAACAC 59.905 38.462 8.61 0.00 0.00 3.32
3112 3819 6.184789 ACCTCTTTCCAAGTTTCAGTTAACA 58.815 36.000 8.61 0.00 0.00 2.41
3113 3820 6.694877 ACCTCTTTCCAAGTTTCAGTTAAC 57.305 37.500 0.00 0.00 0.00 2.01
3114 3821 7.712204 AAACCTCTTTCCAAGTTTCAGTTAA 57.288 32.000 0.00 0.00 0.00 2.01
3115 3822 7.394923 TCAAAACCTCTTTCCAAGTTTCAGTTA 59.605 33.333 0.00 0.00 31.47 2.24
3116 3823 6.210584 TCAAAACCTCTTTCCAAGTTTCAGTT 59.789 34.615 0.00 0.00 31.47 3.16
3117 3824 5.714806 TCAAAACCTCTTTCCAAGTTTCAGT 59.285 36.000 0.00 0.00 31.47 3.41
3118 3825 6.207691 TCAAAACCTCTTTCCAAGTTTCAG 57.792 37.500 0.00 0.00 31.47 3.02
3119 3826 6.790232 ATCAAAACCTCTTTCCAAGTTTCA 57.210 33.333 0.00 0.00 31.47 2.69
3123 3830 7.394016 ACAAAAATCAAAACCTCTTTCCAAGT 58.606 30.769 0.00 0.00 0.00 3.16
3124 3831 7.848223 ACAAAAATCAAAACCTCTTTCCAAG 57.152 32.000 0.00 0.00 0.00 3.61
3128 3835 7.438160 CCTGGTACAAAAATCAAAACCTCTTTC 59.562 37.037 0.00 0.00 38.70 2.62
3142 3849 2.436173 CAAAAGGGCCCTGGTACAAAAA 59.564 45.455 29.50 0.00 38.70 1.94
3145 3852 0.854218 TCAAAAGGGCCCTGGTACAA 59.146 50.000 29.50 6.39 38.70 2.41
3147 3854 1.545841 CTTCAAAAGGGCCCTGGTAC 58.454 55.000 29.50 0.00 0.00 3.34
3188 3895 4.470334 ACAGAGCACAAACCATGTTTTT 57.530 36.364 0.00 0.00 41.46 1.94
3189 3896 4.183101 CAACAGAGCACAAACCATGTTTT 58.817 39.130 0.00 0.00 41.46 2.43
3190 3897 3.784338 CAACAGAGCACAAACCATGTTT 58.216 40.909 0.00 0.00 41.46 2.83
3191 3898 2.481795 GCAACAGAGCACAAACCATGTT 60.482 45.455 0.00 0.00 41.46 2.71
3192 3899 1.067516 GCAACAGAGCACAAACCATGT 59.932 47.619 0.00 0.00 45.34 3.21
3193 3900 1.774639 GCAACAGAGCACAAACCATG 58.225 50.000 0.00 0.00 0.00 3.66
3194 3901 0.311790 CGCAACAGAGCACAAACCAT 59.688 50.000 0.00 0.00 0.00 3.55
3195 3902 1.723608 CCGCAACAGAGCACAAACCA 61.724 55.000 0.00 0.00 0.00 3.67
3196 3903 1.008538 CCGCAACAGAGCACAAACC 60.009 57.895 0.00 0.00 0.00 3.27
3197 3904 0.941542 TACCGCAACAGAGCACAAAC 59.058 50.000 0.00 0.00 0.00 2.93
3198 3905 1.804151 GATACCGCAACAGAGCACAAA 59.196 47.619 0.00 0.00 0.00 2.83
3199 3906 1.001974 AGATACCGCAACAGAGCACAA 59.998 47.619 0.00 0.00 0.00 3.33
3200 3907 0.608130 AGATACCGCAACAGAGCACA 59.392 50.000 0.00 0.00 0.00 4.57
3201 3908 2.194271 GTAGATACCGCAACAGAGCAC 58.806 52.381 0.00 0.00 0.00 4.40
3202 3909 1.136305 GGTAGATACCGCAACAGAGCA 59.864 52.381 0.00 0.00 36.50 4.26
3203 3910 1.854227 GGTAGATACCGCAACAGAGC 58.146 55.000 0.00 0.00 36.50 4.09
3213 3920 3.197983 ACAGTGCCTTGAAGGTAGATACC 59.802 47.826 13.58 0.43 46.82 2.73
3214 3921 4.473477 ACAGTGCCTTGAAGGTAGATAC 57.527 45.455 13.58 5.08 37.80 2.24
3215 3922 4.777896 AGAACAGTGCCTTGAAGGTAGATA 59.222 41.667 13.58 0.00 37.80 1.98
3216 3923 3.584848 AGAACAGTGCCTTGAAGGTAGAT 59.415 43.478 13.58 0.00 37.80 1.98
3217 3924 2.972713 AGAACAGTGCCTTGAAGGTAGA 59.027 45.455 13.58 0.00 37.80 2.59
3218 3925 3.070018 CAGAACAGTGCCTTGAAGGTAG 58.930 50.000 13.58 0.00 37.80 3.18
3219 3926 2.703536 TCAGAACAGTGCCTTGAAGGTA 59.296 45.455 13.58 5.31 37.80 3.08
3220 3927 1.490490 TCAGAACAGTGCCTTGAAGGT 59.510 47.619 13.58 0.00 37.80 3.50
3221 3928 2.260844 TCAGAACAGTGCCTTGAAGG 57.739 50.000 6.92 6.92 38.80 3.46
3222 3929 4.070716 AGAATCAGAACAGTGCCTTGAAG 58.929 43.478 0.00 0.00 0.00 3.02
3223 3930 4.090761 AGAATCAGAACAGTGCCTTGAA 57.909 40.909 0.00 0.00 0.00 2.69
3224 3931 3.777106 AGAATCAGAACAGTGCCTTGA 57.223 42.857 0.00 0.00 0.00 3.02
3225 3932 4.142730 GCTAAGAATCAGAACAGTGCCTTG 60.143 45.833 0.00 0.00 0.00 3.61
3226 3933 4.006319 GCTAAGAATCAGAACAGTGCCTT 58.994 43.478 0.00 0.00 0.00 4.35
3227 3934 3.262915 AGCTAAGAATCAGAACAGTGCCT 59.737 43.478 0.00 0.00 0.00 4.75
3228 3935 3.604582 AGCTAAGAATCAGAACAGTGCC 58.395 45.455 0.00 0.00 0.00 5.01
3229 3936 4.142730 CCAAGCTAAGAATCAGAACAGTGC 60.143 45.833 0.00 0.00 0.00 4.40
3230 3937 4.394300 CCCAAGCTAAGAATCAGAACAGTG 59.606 45.833 0.00 0.00 0.00 3.66
3231 3938 4.042187 ACCCAAGCTAAGAATCAGAACAGT 59.958 41.667 0.00 0.00 0.00 3.55
3232 3939 4.583871 ACCCAAGCTAAGAATCAGAACAG 58.416 43.478 0.00 0.00 0.00 3.16
3233 3940 4.640771 ACCCAAGCTAAGAATCAGAACA 57.359 40.909 0.00 0.00 0.00 3.18
3234 3941 4.379918 GCAACCCAAGCTAAGAATCAGAAC 60.380 45.833 0.00 0.00 0.00 3.01
3235 3942 3.758554 GCAACCCAAGCTAAGAATCAGAA 59.241 43.478 0.00 0.00 0.00 3.02
3236 3943 3.009473 AGCAACCCAAGCTAAGAATCAGA 59.991 43.478 0.00 0.00 41.32 3.27
3237 3944 3.128242 CAGCAACCCAAGCTAAGAATCAG 59.872 47.826 0.00 0.00 41.14 2.90
3238 3945 3.084039 CAGCAACCCAAGCTAAGAATCA 58.916 45.455 0.00 0.00 41.14 2.57
3239 3946 3.347216 TCAGCAACCCAAGCTAAGAATC 58.653 45.455 0.00 0.00 41.14 2.52
3240 3947 3.439857 TCAGCAACCCAAGCTAAGAAT 57.560 42.857 0.00 0.00 41.14 2.40
3241 3948 2.949177 TCAGCAACCCAAGCTAAGAA 57.051 45.000 0.00 0.00 41.14 2.52
3242 3949 2.884639 GTTTCAGCAACCCAAGCTAAGA 59.115 45.455 0.00 0.00 41.14 2.10
3243 3950 2.350772 CGTTTCAGCAACCCAAGCTAAG 60.351 50.000 0.00 0.00 41.14 2.18
3244 3951 1.606668 CGTTTCAGCAACCCAAGCTAA 59.393 47.619 0.00 0.00 41.14 3.09
3245 3952 1.234821 CGTTTCAGCAACCCAAGCTA 58.765 50.000 0.00 0.00 41.14 3.32
3246 3953 0.751643 ACGTTTCAGCAACCCAAGCT 60.752 50.000 0.00 0.00 44.62 3.74
3247 3954 0.948678 TACGTTTCAGCAACCCAAGC 59.051 50.000 0.00 0.00 30.65 4.01
3248 3955 1.944024 TGTACGTTTCAGCAACCCAAG 59.056 47.619 0.00 0.00 30.65 3.61
3249 3956 2.039818 TGTACGTTTCAGCAACCCAA 57.960 45.000 0.00 0.00 30.65 4.12
3250 3957 2.039818 TTGTACGTTTCAGCAACCCA 57.960 45.000 0.00 0.00 30.65 4.51
3251 3958 3.636282 AATTGTACGTTTCAGCAACCC 57.364 42.857 0.00 0.00 30.65 4.11
3252 3959 4.675114 CAGAAATTGTACGTTTCAGCAACC 59.325 41.667 19.50 0.00 37.89 3.77
3253 3960 4.146443 GCAGAAATTGTACGTTTCAGCAAC 59.854 41.667 23.60 9.11 43.38 4.17
3254 3961 4.036262 AGCAGAAATTGTACGTTTCAGCAA 59.964 37.500 27.01 4.90 45.11 3.91
3264 3971 5.117592 GCAACACAATCAGCAGAAATTGTAC 59.882 40.000 0.00 0.00 42.62 2.90
3377 4084 1.003355 AACCAGGGCACATCAGACG 60.003 57.895 0.00 0.00 0.00 4.18
3400 4267 0.674581 TTGGCATTCCAGACGAGCAG 60.675 55.000 0.00 0.00 44.53 4.24
3416 4283 4.876107 AGCTGACTTCGTATGGTAAATTGG 59.124 41.667 0.00 0.00 0.00 3.16
3428 4295 4.402793 ACCACATAAGATAGCTGACTTCGT 59.597 41.667 9.82 7.03 0.00 3.85
3429 4296 4.938080 ACCACATAAGATAGCTGACTTCG 58.062 43.478 9.82 6.54 0.00 3.79
3472 4339 2.734492 CGACTACAAATCCCACTCGTCC 60.734 54.545 0.00 0.00 0.00 4.79
3524 4391 3.543680 ATGCTACTGTGGTATGGACAC 57.456 47.619 0.00 0.00 39.26 3.67
3581 4448 1.131638 AACAGCCACTTCCTGTCTGA 58.868 50.000 0.00 0.00 42.37 3.27
3616 4483 7.819415 TGTCATCTAGTTTTCACAATACTCCTG 59.181 37.037 0.00 0.00 0.00 3.86
3617 4484 7.819900 GTGTCATCTAGTTTTCACAATACTCCT 59.180 37.037 0.00 0.00 0.00 3.69
3656 4523 4.336532 AATGTTAGCTTAAAGTTCCGCG 57.663 40.909 0.00 0.00 0.00 6.46
3667 4534 9.577222 TTACTACAAAACCCTTAATGTTAGCTT 57.423 29.630 0.00 0.00 0.00 3.74
3727 4594 6.016777 AGTGGCTAGCACATTATTATTCTTGC 60.017 38.462 18.24 0.00 0.00 4.01
3737 4604 2.039746 ACAACCAGTGGCTAGCACATTA 59.960 45.455 18.24 0.00 0.00 1.90
3744 4611 3.381908 CCTACTCTACAACCAGTGGCTAG 59.618 52.174 9.78 5.95 0.00 3.42
3823 4690 5.919707 TGCAATGTCACATAACACAATTGAC 59.080 36.000 13.59 0.00 37.65 3.18
3865 4732 3.660669 TGATCAACCCCCTTTTTCCTACT 59.339 43.478 0.00 0.00 0.00 2.57
3975 4842 1.142870 AGGGCAAACAACTAGAGTGCA 59.857 47.619 0.00 0.00 36.93 4.57
4016 4883 5.045872 AGTTGCATTTTCTCAGAGTTTTGC 58.954 37.500 0.00 4.23 0.00 3.68
4019 4886 7.807977 TCTAAGTTGCATTTTCTCAGAGTTT 57.192 32.000 0.00 0.00 0.00 2.66
4021 4888 6.072783 GCTTCTAAGTTGCATTTTCTCAGAGT 60.073 38.462 0.00 0.00 0.00 3.24
4023 4890 5.182001 GGCTTCTAAGTTGCATTTTCTCAGA 59.818 40.000 0.00 0.00 0.00 3.27
4028 4895 8.763049 AATTAAGGCTTCTAAGTTGCATTTTC 57.237 30.769 1.30 0.00 32.90 2.29
4054 4921 1.066002 CTGGTGTTGAGCAAGGTTGTG 59.934 52.381 0.00 0.00 0.00 3.33
4071 4938 6.095377 GGCTTTGTGAAACTGATTTATCTGG 58.905 40.000 2.37 0.00 38.04 3.86
4081 4948 3.119173 TCAAGGTTGGCTTTGTGAAACTG 60.119 43.478 0.00 0.00 38.04 3.16
4087 4954 0.746063 TGCTCAAGGTTGGCTTTGTG 59.254 50.000 5.25 0.00 33.94 3.33
4098 4965 3.228453 AGCCAAATATCCATGCTCAAGG 58.772 45.455 0.00 0.00 0.00 3.61
4125 4992 6.183360 ACAGGACGCATCTTATTCTTGAAATG 60.183 38.462 0.00 0.00 0.00 2.32
4149 5017 9.868277 AATAGCTATCTACTGATTGATGCTTAC 57.132 33.333 6.72 0.00 34.32 2.34
4176 5044 6.223120 ACATGAAATTCAAACTGGCTTTACC 58.777 36.000 0.00 0.00 39.84 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.