Multiple sequence alignment - TraesCS4D01G113100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G113100 chr4D 100.000 3859 0 0 1 3859 93712860 93709002 0.000000e+00 7127.0
1 TraesCS4D01G113100 chr4D 81.622 925 158 5 2938 3859 484841728 484842643 0.000000e+00 756.0
2 TraesCS4D01G113100 chr4A 94.254 2854 121 21 1 2824 488109428 488112268 0.000000e+00 4322.0
3 TraesCS4D01G113100 chr4A 87.121 924 105 9 2937 3858 642124981 642124070 0.000000e+00 1035.0
4 TraesCS4D01G113100 chr4B 95.946 2072 59 9 760 2824 132168193 132166140 0.000000e+00 3338.0
5 TraesCS4D01G113100 chr5A 89.201 926 87 5 2937 3859 563108019 563108934 0.000000e+00 1144.0
6 TraesCS4D01G113100 chr5A 89.189 925 89 3 2937 3859 563169107 563170022 0.000000e+00 1144.0
7 TraesCS4D01G113100 chr5A 81.538 1300 202 28 1302 2579 440735060 440733777 0.000000e+00 1037.0
8 TraesCS4D01G113100 chr5A 88.776 392 42 1 2937 3326 563105243 563105634 2.700000e-131 479.0
9 TraesCS4D01G113100 chr5A 82.667 75 12 1 589 662 112143978 112144052 8.950000e-07 65.8
10 TraesCS4D01G113100 chr5B 81.077 1300 204 32 1302 2577 398626590 398625309 0.000000e+00 1000.0
11 TraesCS4D01G113100 chr6B 85.405 925 121 8 2937 3859 476963150 476964062 0.000000e+00 948.0
12 TraesCS4D01G113100 chr6B 82.099 162 21 6 514 673 677504089 677504244 8.700000e-27 132.0
13 TraesCS4D01G113100 chr6B 97.297 37 1 0 628 664 66786544 66786580 3.220000e-06 63.9
14 TraesCS4D01G113100 chr6B 75.694 144 24 9 514 648 485874287 485874146 1.160000e-05 62.1
15 TraesCS4D01G113100 chr5D 81.014 1164 186 27 1436 2577 339654074 339652924 0.000000e+00 893.0
16 TraesCS4D01G113100 chr5D 90.722 97 9 0 2833 2929 424287243 424287147 3.130000e-26 130.0
17 TraesCS4D01G113100 chr3D 75.266 659 138 21 1303 1951 95246511 95245868 1.360000e-74 291.0
18 TraesCS4D01G113100 chr3D 90.722 97 9 0 2833 2929 13993139 13993043 3.130000e-26 130.0
19 TraesCS4D01G113100 chr7B 79.747 237 40 3 443 673 106284421 106284187 8.580000e-37 165.0
20 TraesCS4D01G113100 chr7B 88.073 109 11 2 2823 2929 746842445 746842337 1.130000e-25 128.0
21 TraesCS4D01G113100 chr7A 88.393 112 10 3 2819 2927 47749331 47749442 8.700000e-27 132.0
22 TraesCS4D01G113100 chr7A 89.691 97 10 0 2833 2929 82147359 82147455 1.460000e-24 124.0
23 TraesCS4D01G113100 chr3A 89.412 85 9 0 2833 2917 54205600 54205516 1.470000e-19 108.0
24 TraesCS4D01G113100 chr6D 94.737 57 2 1 510 565 343029293 343029237 1.910000e-13 87.9
25 TraesCS4D01G113100 chr6A 91.667 60 4 1 510 568 483540471 483540412 8.890000e-12 82.4
26 TraesCS4D01G113100 chr6A 78.761 113 15 3 2825 2929 614196864 614196753 2.490000e-07 67.6
27 TraesCS4D01G113100 chr3B 75.419 179 37 6 473 648 142655165 142654991 3.200000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G113100 chr4D 93709002 93712860 3858 True 7127.0 7127 100.0000 1 3859 1 chr4D.!!$R1 3858
1 TraesCS4D01G113100 chr4D 484841728 484842643 915 False 756.0 756 81.6220 2938 3859 1 chr4D.!!$F1 921
2 TraesCS4D01G113100 chr4A 488109428 488112268 2840 False 4322.0 4322 94.2540 1 2824 1 chr4A.!!$F1 2823
3 TraesCS4D01G113100 chr4A 642124070 642124981 911 True 1035.0 1035 87.1210 2937 3858 1 chr4A.!!$R1 921
4 TraesCS4D01G113100 chr4B 132166140 132168193 2053 True 3338.0 3338 95.9460 760 2824 1 chr4B.!!$R1 2064
5 TraesCS4D01G113100 chr5A 563169107 563170022 915 False 1144.0 1144 89.1890 2937 3859 1 chr5A.!!$F2 922
6 TraesCS4D01G113100 chr5A 440733777 440735060 1283 True 1037.0 1037 81.5380 1302 2579 1 chr5A.!!$R1 1277
7 TraesCS4D01G113100 chr5A 563105243 563108934 3691 False 811.5 1144 88.9885 2937 3859 2 chr5A.!!$F3 922
8 TraesCS4D01G113100 chr5B 398625309 398626590 1281 True 1000.0 1000 81.0770 1302 2577 1 chr5B.!!$R1 1275
9 TraesCS4D01G113100 chr6B 476963150 476964062 912 False 948.0 948 85.4050 2937 3859 1 chr6B.!!$F2 922
10 TraesCS4D01G113100 chr5D 339652924 339654074 1150 True 893.0 893 81.0140 1436 2577 1 chr5D.!!$R1 1141
11 TraesCS4D01G113100 chr3D 95245868 95246511 643 True 291.0 291 75.2660 1303 1951 1 chr3D.!!$R2 648

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
103 104 0.038526 ACGGAGGTTGACGATGACAC 60.039 55.0 0.00 0.0 0.00 3.67 F
325 326 0.105194 TGGGAAGGTGGTGAGAGACA 60.105 55.0 0.00 0.0 0.00 3.41 F
374 381 0.890996 GCATCGGCTTCTATTGGGGG 60.891 60.0 0.00 0.0 36.96 5.40 F
405 412 0.911769 AGGCAAGGGATGATGTTCGA 59.088 50.0 0.00 0.0 0.00 3.71 F
657 664 1.094785 ATTTGCCATGTGCTCGTACC 58.905 50.0 7.54 0.0 42.00 3.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2098 2125 1.269413 GGACGTCTTCTTGAACCACGA 60.269 52.381 16.46 0.00 34.55 4.35 R
2481 2526 2.709631 GTCCTTCTTGACGTCGACG 58.290 57.895 34.58 34.58 46.33 5.12 R
2630 2675 7.929785 ACTACCGAATCAAGAGTAACAGAAAAA 59.070 33.333 0.00 0.00 0.00 1.94 R
2640 2685 2.163815 CCGTCACTACCGAATCAAGAGT 59.836 50.000 0.00 0.00 0.00 3.24 R
2858 2913 0.178987 AGCGGACGAGATCCCATACT 60.179 55.000 0.00 0.00 46.04 2.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 0.328258 AAGTGGAAGACGGGGAATGG 59.672 55.000 0.00 0.00 0.00 3.16
59 60 0.250338 GAGGCACCACCGAAGAAACT 60.250 55.000 0.00 0.00 46.52 2.66
62 63 1.804748 GGCACCACCGAAGAAACTAAG 59.195 52.381 0.00 0.00 0.00 2.18
103 104 0.038526 ACGGAGGTTGACGATGACAC 60.039 55.000 0.00 0.00 0.00 3.67
149 150 1.299976 GGGTCAAGCAAGGGACGAT 59.700 57.895 0.00 0.00 34.87 3.73
163 164 2.823154 GGGACGATCTGATAGGAGGAAG 59.177 54.545 2.86 0.00 0.00 3.46
232 233 6.155910 TGAGAGAGAAGGTTGATAAGCTGATT 59.844 38.462 0.00 0.00 39.57 2.57
251 252 8.248945 AGCTGATTGTAAAGAAGAAATTGATGG 58.751 33.333 0.00 0.00 0.00 3.51
254 255 4.732784 TGTAAAGAAGAAATTGATGGCGC 58.267 39.130 0.00 0.00 0.00 6.53
296 297 1.270358 ACTTGACGGAGAAGAAGCACC 60.270 52.381 0.00 0.00 0.00 5.01
307 308 5.693555 GGAGAAGAAGCACCAAGAAAAATTG 59.306 40.000 0.00 0.00 0.00 2.32
325 326 0.105194 TGGGAAGGTGGTGAGAGACA 60.105 55.000 0.00 0.00 0.00 3.41
345 352 3.005050 ACAAACGAGATGTGTAAGGACGA 59.995 43.478 0.00 0.00 0.00 4.20
374 381 0.890996 GCATCGGCTTCTATTGGGGG 60.891 60.000 0.00 0.00 36.96 5.40
382 389 1.141053 CTTCTATTGGGGGAGAACCGG 59.859 57.143 0.00 0.00 41.60 5.28
394 401 1.971695 GAACCGGTTGAGGCAAGGG 60.972 63.158 27.87 0.00 33.69 3.95
398 405 1.299648 CGGTTGAGGCAAGGGATGA 59.700 57.895 0.00 0.00 0.00 2.92
402 409 2.450476 GTTGAGGCAAGGGATGATGTT 58.550 47.619 0.00 0.00 0.00 2.71
405 412 0.911769 AGGCAAGGGATGATGTTCGA 59.088 50.000 0.00 0.00 0.00 3.71
415 422 3.865745 GGATGATGTTCGAGGTTAGTGTG 59.134 47.826 0.00 0.00 0.00 3.82
430 437 7.280356 AGGTTAGTGTGTGAAGTTGAATAGTT 58.720 34.615 0.00 0.00 0.00 2.24
431 438 7.441458 AGGTTAGTGTGTGAAGTTGAATAGTTC 59.559 37.037 0.00 0.00 36.83 3.01
432 439 7.441458 GGTTAGTGTGTGAAGTTGAATAGTTCT 59.559 37.037 0.00 0.00 37.15 3.01
469 476 4.495349 CGATAACACTCGAACGTCTGGTAT 60.495 45.833 0.00 0.00 41.12 2.73
479 486 3.350219 ACGTCTGGTATGAGGCAAATT 57.650 42.857 0.00 0.00 0.00 1.82
489 496 5.694458 GGTATGAGGCAAATTGAACGTTTTT 59.306 36.000 0.46 0.00 0.00 1.94
490 497 6.864165 GGTATGAGGCAAATTGAACGTTTTTA 59.136 34.615 0.46 0.00 0.00 1.52
491 498 7.544217 GGTATGAGGCAAATTGAACGTTTTTAT 59.456 33.333 0.46 0.00 0.00 1.40
494 501 6.201806 TGAGGCAAATTGAACGTTTTTATTGG 59.798 34.615 0.46 1.92 0.00 3.16
498 505 8.007152 GGCAAATTGAACGTTTTTATTGGTAAG 58.993 33.333 0.46 0.00 0.00 2.34
506 513 7.556733 ACGTTTTTATTGGTAAGTTCAGTGA 57.443 32.000 0.00 0.00 0.00 3.41
508 515 7.066043 ACGTTTTTATTGGTAAGTTCAGTGACA 59.934 33.333 0.00 0.00 0.00 3.58
509 516 7.375017 CGTTTTTATTGGTAAGTTCAGTGACAC 59.625 37.037 0.00 0.00 0.00 3.67
524 531 4.214119 CAGTGACACGAGGATGACAATTTT 59.786 41.667 0.00 0.00 0.00 1.82
531 538 4.156008 ACGAGGATGACAATTTTAGTTGGC 59.844 41.667 0.00 0.00 37.63 4.52
549 556 2.816672 TGGCAAGCATGACAATTTCGTA 59.183 40.909 0.00 0.00 43.21 3.43
550 557 3.171277 GGCAAGCATGACAATTTCGTAC 58.829 45.455 0.00 0.00 33.41 3.67
585 592 2.315011 TGATGAAAAATTGTCGTGCGC 58.685 42.857 0.00 0.00 0.00 6.09
586 593 2.287248 TGATGAAAAATTGTCGTGCGCA 60.287 40.909 5.66 5.66 0.00 6.09
599 606 1.194547 CGTGCGCATCAACTAACTTGT 59.805 47.619 15.91 0.00 0.00 3.16
600 607 2.721797 CGTGCGCATCAACTAACTTGTC 60.722 50.000 15.91 0.00 0.00 3.18
601 608 2.223144 GTGCGCATCAACTAACTTGTCA 59.777 45.455 15.91 0.00 0.00 3.58
602 609 3.073678 TGCGCATCAACTAACTTGTCAT 58.926 40.909 5.66 0.00 0.00 3.06
603 610 3.501828 TGCGCATCAACTAACTTGTCATT 59.498 39.130 5.66 0.00 0.00 2.57
604 611 4.091424 GCGCATCAACTAACTTGTCATTC 58.909 43.478 0.30 0.00 0.00 2.67
605 612 4.142816 GCGCATCAACTAACTTGTCATTCT 60.143 41.667 0.30 0.00 0.00 2.40
606 613 5.554636 CGCATCAACTAACTTGTCATTCTC 58.445 41.667 0.00 0.00 0.00 2.87
608 615 5.120830 GCATCAACTAACTTGTCATTCTCGT 59.879 40.000 0.00 0.00 0.00 4.18
616 623 6.712241 AACTTGTCATTCTCGTGTCAATAG 57.288 37.500 0.00 0.00 0.00 1.73
625 632 7.928167 TCATTCTCGTGTCAATAGAATTGCTAT 59.072 33.333 7.78 0.00 41.59 2.97
643 650 4.615121 TGCTATCGAAAACGTTCAATTTGC 59.385 37.500 0.00 2.30 32.89 3.68
650 657 1.782044 ACGTTCAATTTGCCATGTGC 58.218 45.000 0.00 0.00 41.77 4.57
652 659 1.987770 CGTTCAATTTGCCATGTGCTC 59.012 47.619 7.54 0.00 42.00 4.26
654 661 1.246649 TCAATTTGCCATGTGCTCGT 58.753 45.000 7.54 0.00 42.00 4.18
657 664 1.094785 ATTTGCCATGTGCTCGTACC 58.905 50.000 7.54 0.00 42.00 3.34
664 671 2.196749 CATGTGCTCGTACCTGACATC 58.803 52.381 0.00 0.00 0.00 3.06
665 672 1.253100 TGTGCTCGTACCTGACATCA 58.747 50.000 0.00 0.00 0.00 3.07
667 674 2.263077 GTGCTCGTACCTGACATCAAG 58.737 52.381 0.00 0.00 0.00 3.02
670 681 3.119602 TGCTCGTACCTGACATCAAGTAC 60.120 47.826 9.76 9.76 39.29 2.73
674 685 4.157289 TCGTACCTGACATCAAGTACTTCC 59.843 45.833 15.43 0.00 40.07 3.46
743 758 2.480416 GCAAACACACATTTCCACCGAA 60.480 45.455 0.00 0.00 0.00 4.30
751 766 4.217550 ACACATTTCCACCGAATTTCGAAT 59.782 37.500 19.91 8.36 43.74 3.34
757 772 3.189702 TCCACCGAATTTCGAATGTTTCC 59.810 43.478 19.91 0.00 43.74 3.13
759 774 4.320935 CCACCGAATTTCGAATGTTTCCTT 60.321 41.667 19.91 0.00 43.74 3.36
858 881 2.329678 CTGCTCTCTCCTACGCACCG 62.330 65.000 0.00 0.00 0.00 4.94
859 882 3.111939 CTCTCTCCTACGCACCGG 58.888 66.667 0.00 0.00 0.00 5.28
860 883 1.749638 CTCTCTCCTACGCACCGGT 60.750 63.158 0.00 0.00 0.00 5.28
863 886 3.066190 CTCCTACGCACCGGTCCA 61.066 66.667 2.59 0.00 0.00 4.02
986 1013 3.841379 TATAAGCCGCTCGCCGCAG 62.841 63.158 0.00 0.00 38.78 5.18
1003 1030 3.932710 CCGCAGAGCTAAACTAATCACAA 59.067 43.478 0.00 0.00 0.00 3.33
1065 1092 1.758906 CTCCCGTTCTCCTCCCCTC 60.759 68.421 0.00 0.00 0.00 4.30
1066 1093 2.038975 CCCGTTCTCCTCCCCTCA 59.961 66.667 0.00 0.00 0.00 3.86
1212 1239 3.934962 GGCCGGATCTCTGCTCCC 61.935 72.222 5.05 0.00 0.00 4.30
1272 1299 4.760220 TGGGAGAGGGAAGGGGGC 62.760 72.222 0.00 0.00 0.00 5.80
1327 1354 3.647771 GGAAGAAGGGCGGGGTGT 61.648 66.667 0.00 0.00 0.00 4.16
2098 2125 4.406173 CGCAGCTCGTGGAGACGT 62.406 66.667 0.00 0.00 46.20 4.34
2217 2256 2.289072 CGCGTTCCATCTGATATCCCTT 60.289 50.000 0.00 0.00 0.00 3.95
2481 2526 2.507324 GCTCCTTCGGTGCTCGTC 60.507 66.667 0.05 0.00 38.91 4.20
2629 2674 1.535462 GACGCTGCAGTACCATGTTTT 59.465 47.619 16.64 0.00 0.00 2.43
2630 2675 1.953686 ACGCTGCAGTACCATGTTTTT 59.046 42.857 16.64 0.00 0.00 1.94
2679 2728 4.451629 ACGGGAGTGAAGTAGTATGTTG 57.548 45.455 0.00 0.00 44.82 3.33
2680 2729 3.187700 CGGGAGTGAAGTAGTATGTTGC 58.812 50.000 0.00 0.00 0.00 4.17
2681 2730 3.119101 CGGGAGTGAAGTAGTATGTTGCT 60.119 47.826 0.00 0.00 0.00 3.91
2682 2731 4.184629 GGGAGTGAAGTAGTATGTTGCTG 58.815 47.826 0.00 0.00 0.00 4.41
2884 2939 3.851976 GGATCTCGTCCGCTAATACAT 57.148 47.619 0.00 0.00 37.23 2.29
2885 2940 4.175787 GGATCTCGTCCGCTAATACATT 57.824 45.455 0.00 0.00 37.23 2.71
2886 2941 5.306532 GGATCTCGTCCGCTAATACATTA 57.693 43.478 0.00 0.00 37.23 1.90
2887 2942 5.706916 GGATCTCGTCCGCTAATACATTAA 58.293 41.667 0.00 0.00 37.23 1.40
2888 2943 5.800941 GGATCTCGTCCGCTAATACATTAAG 59.199 44.000 0.00 0.00 37.23 1.85
2889 2944 5.117355 TCTCGTCCGCTAATACATTAAGG 57.883 43.478 0.00 0.00 0.00 2.69
2890 2945 4.823442 TCTCGTCCGCTAATACATTAAGGA 59.177 41.667 0.00 3.17 31.19 3.36
2891 2946 5.475909 TCTCGTCCGCTAATACATTAAGGAT 59.524 40.000 0.00 0.00 34.15 3.24
2892 2947 6.656270 TCTCGTCCGCTAATACATTAAGGATA 59.344 38.462 0.00 0.00 34.15 2.59
2893 2948 6.615088 TCGTCCGCTAATACATTAAGGATAC 58.385 40.000 0.00 0.41 34.15 2.24
2894 2949 6.207221 TCGTCCGCTAATACATTAAGGATACA 59.793 38.462 0.00 0.00 41.41 2.29
2895 2950 6.864685 CGTCCGCTAATACATTAAGGATACAA 59.135 38.462 0.00 0.00 41.41 2.41
2896 2951 7.544566 CGTCCGCTAATACATTAAGGATACAAT 59.455 37.037 0.00 0.00 41.41 2.71
2897 2952 8.870879 GTCCGCTAATACATTAAGGATACAATC 58.129 37.037 0.00 0.00 41.41 2.67
2898 2953 8.590204 TCCGCTAATACATTAAGGATACAATCA 58.410 33.333 0.00 0.00 41.41 2.57
2899 2954 8.873830 CCGCTAATACATTAAGGATACAATCAG 58.126 37.037 0.00 0.00 41.41 2.90
2900 2955 8.873830 CGCTAATACATTAAGGATACAATCAGG 58.126 37.037 0.00 0.00 41.41 3.86
2901 2956 9.167311 GCTAATACATTAAGGATACAATCAGGG 57.833 37.037 0.00 0.00 41.41 4.45
2902 2957 9.672673 CTAATACATTAAGGATACAATCAGGGG 57.327 37.037 0.00 0.00 41.41 4.79
2903 2958 5.324832 ACATTAAGGATACAATCAGGGGG 57.675 43.478 0.00 0.00 41.41 5.40
2904 2959 4.981647 ACATTAAGGATACAATCAGGGGGA 59.018 41.667 0.00 0.00 41.41 4.81
2905 2960 5.073691 ACATTAAGGATACAATCAGGGGGAG 59.926 44.000 0.00 0.00 41.41 4.30
2906 2961 3.438131 AAGGATACAATCAGGGGGAGA 57.562 47.619 0.00 0.00 41.41 3.71
2907 2962 3.438131 AGGATACAATCAGGGGGAGAA 57.562 47.619 0.00 0.00 41.41 2.87
2908 2963 3.747852 AGGATACAATCAGGGGGAGAAA 58.252 45.455 0.00 0.00 41.41 2.52
2909 2964 4.119155 AGGATACAATCAGGGGGAGAAAA 58.881 43.478 0.00 0.00 41.41 2.29
2910 2965 4.079730 AGGATACAATCAGGGGGAGAAAAC 60.080 45.833 0.00 0.00 41.41 2.43
2911 2966 2.604912 ACAATCAGGGGGAGAAAACC 57.395 50.000 0.00 0.00 0.00 3.27
2912 2967 2.073776 ACAATCAGGGGGAGAAAACCT 58.926 47.619 0.00 0.00 34.19 3.50
2913 2968 2.041755 ACAATCAGGGGGAGAAAACCTC 59.958 50.000 0.00 0.00 41.22 3.85
2925 2980 5.592104 GAGAAAACCTCCAAACCAAAGAA 57.408 39.130 0.00 0.00 35.87 2.52
2926 2981 5.972935 GAGAAAACCTCCAAACCAAAGAAA 58.027 37.500 0.00 0.00 35.87 2.52
2927 2982 5.730550 AGAAAACCTCCAAACCAAAGAAAC 58.269 37.500 0.00 0.00 0.00 2.78
2928 2983 5.247337 AGAAAACCTCCAAACCAAAGAAACA 59.753 36.000 0.00 0.00 0.00 2.83
2929 2984 4.736126 AACCTCCAAACCAAAGAAACAG 57.264 40.909 0.00 0.00 0.00 3.16
2930 2985 3.708451 ACCTCCAAACCAAAGAAACAGT 58.292 40.909 0.00 0.00 0.00 3.55
2931 2986 4.862371 ACCTCCAAACCAAAGAAACAGTA 58.138 39.130 0.00 0.00 0.00 2.74
2932 2987 5.454966 ACCTCCAAACCAAAGAAACAGTAT 58.545 37.500 0.00 0.00 0.00 2.12
2933 2988 5.301805 ACCTCCAAACCAAAGAAACAGTATG 59.698 40.000 0.00 0.00 46.00 2.39
2934 2989 5.534654 CCTCCAAACCAAAGAAACAGTATGA 59.465 40.000 0.00 0.00 39.69 2.15
2935 2990 6.294176 CCTCCAAACCAAAGAAACAGTATGAG 60.294 42.308 0.00 0.00 39.69 2.90
2946 3001 5.302059 AGAAACAGTATGAGCCGATTAGCTA 59.698 40.000 0.00 0.00 45.15 3.32
2953 3008 0.037232 AGCCGATTAGCTATTCGCCC 60.037 55.000 25.39 19.24 42.70 6.13
3063 5894 6.821665 GGGTACAGAGTTAATCATGCTAACAA 59.178 38.462 15.65 0.00 32.66 2.83
3097 5928 4.042884 TCCATCTCCACATGAATCCTCTT 58.957 43.478 0.00 0.00 0.00 2.85
3299 6132 0.323087 TTGATCCAGTCGGTCTCGGA 60.323 55.000 0.00 0.00 36.95 4.55
3318 6152 1.278127 GACGGGTTCCATCTTTCAGGA 59.722 52.381 0.00 0.00 0.00 3.86
3375 6209 3.028850 CACTTCAGCCCATTCATCCATT 58.971 45.455 0.00 0.00 0.00 3.16
3388 6222 0.908910 ATCCATTAGTGTCGCCACCA 59.091 50.000 0.00 0.00 42.88 4.17
3445 6280 1.952102 ATCCCGCGCCTCGTTTCTTA 61.952 55.000 0.00 0.00 36.19 2.10
3535 6370 2.492025 TCCAGAGCCACCTTCCAATAT 58.508 47.619 0.00 0.00 0.00 1.28
3536 6371 2.852449 TCCAGAGCCACCTTCCAATATT 59.148 45.455 0.00 0.00 0.00 1.28
3600 6435 3.499737 CGCATGTCCGCCAAGTCC 61.500 66.667 0.00 0.00 0.00 3.85
3660 6495 0.817634 AAAAGCGGTGCAGCAGTGTA 60.818 50.000 17.33 0.00 40.15 2.90
3735 6570 2.930019 TCAGACCCAGTGGCCAGG 60.930 66.667 5.11 6.87 33.59 4.45
3819 6654 2.038557 GGCTAACCAGTTCCTGTGAGAA 59.961 50.000 0.00 0.00 35.26 2.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 0.107654 CCTCACCATTCCCCGTCTTC 60.108 60.000 0.00 0.00 0.00 2.87
38 39 0.534203 TTTCTTCGGTGGTGCCTCAC 60.534 55.000 0.00 0.00 36.95 3.51
49 50 0.326927 TGGCCCCTTAGTTTCTTCGG 59.673 55.000 0.00 0.00 0.00 4.30
54 55 2.307980 AGGTACTTGGCCCCTTAGTTTC 59.692 50.000 0.00 0.00 27.25 2.78
59 60 0.252375 ACGAGGTACTTGGCCCCTTA 60.252 55.000 0.00 0.00 46.15 2.69
62 63 2.582978 GACGAGGTACTTGGCCCC 59.417 66.667 0.00 0.00 43.79 5.80
103 104 2.837291 CTCCTGGGCCTCCTCTCG 60.837 72.222 4.53 0.00 0.00 4.04
149 150 0.104934 GCCCCCTTCCTCCTATCAGA 60.105 60.000 0.00 0.00 0.00 3.27
163 164 3.468326 GAGCATCTCCTTCGCCCCC 62.468 68.421 0.00 0.00 0.00 5.40
197 198 4.877773 ACCTTCTCTCTCATGTATGGAGT 58.122 43.478 0.00 0.00 34.04 3.85
232 233 4.671508 CGCGCCATCAATTTCTTCTTTACA 60.672 41.667 0.00 0.00 0.00 2.41
254 255 2.096909 CCAACTTGTCTTGCGTTACTCG 60.097 50.000 0.00 0.00 43.12 4.18
296 297 4.100808 TCACCACCTTCCCAATTTTTCTTG 59.899 41.667 0.00 0.00 0.00 3.02
307 308 1.056660 TTGTCTCTCACCACCTTCCC 58.943 55.000 0.00 0.00 0.00 3.97
325 326 3.005050 TGTCGTCCTTACACATCTCGTTT 59.995 43.478 0.00 0.00 0.00 3.60
345 352 2.507944 GCCGATGCTCCTCCATGT 59.492 61.111 0.00 0.00 33.53 3.21
363 370 1.209621 CCGGTTCTCCCCCAATAGAA 58.790 55.000 0.00 0.00 0.00 2.10
372 379 2.046217 GCCTCAACCGGTTCTCCC 60.046 66.667 19.24 2.66 0.00 4.30
374 381 0.955919 CCTTGCCTCAACCGGTTCTC 60.956 60.000 19.24 7.26 0.00 2.87
382 389 2.134789 ACATCATCCCTTGCCTCAAC 57.865 50.000 0.00 0.00 0.00 3.18
394 401 4.327357 CACACACTAACCTCGAACATCATC 59.673 45.833 0.00 0.00 0.00 2.92
398 405 4.202223 ACTTCACACACTAACCTCGAACAT 60.202 41.667 0.00 0.00 0.00 2.71
402 409 3.382227 TCAACTTCACACACTAACCTCGA 59.618 43.478 0.00 0.00 0.00 4.04
405 412 6.827727 ACTATTCAACTTCACACACTAACCT 58.172 36.000 0.00 0.00 0.00 3.50
446 453 2.174764 CCAGACGTTCGAGTGTTATCG 58.825 52.381 0.00 0.00 44.07 2.92
469 476 6.201806 CCAATAAAAACGTTCAATTTGCCTCA 59.798 34.615 0.00 0.00 0.00 3.86
479 486 7.911205 CACTGAACTTACCAATAAAAACGTTCA 59.089 33.333 0.00 0.00 37.68 3.18
489 496 5.456548 TCGTGTCACTGAACTTACCAATA 57.543 39.130 0.65 0.00 0.00 1.90
490 497 4.307432 CTCGTGTCACTGAACTTACCAAT 58.693 43.478 0.65 0.00 0.00 3.16
491 498 3.491964 CCTCGTGTCACTGAACTTACCAA 60.492 47.826 0.65 0.00 0.00 3.67
494 501 3.637998 TCCTCGTGTCACTGAACTTAC 57.362 47.619 0.65 0.00 0.00 2.34
498 505 2.288213 TGTCATCCTCGTGTCACTGAAC 60.288 50.000 0.65 0.00 0.00 3.18
501 508 2.438868 TTGTCATCCTCGTGTCACTG 57.561 50.000 0.65 0.00 0.00 3.66
506 513 5.181245 CCAACTAAAATTGTCATCCTCGTGT 59.819 40.000 0.00 0.00 0.00 4.49
508 515 4.156008 GCCAACTAAAATTGTCATCCTCGT 59.844 41.667 0.00 0.00 0.00 4.18
509 516 4.155826 TGCCAACTAAAATTGTCATCCTCG 59.844 41.667 0.00 0.00 0.00 4.63
524 531 4.615682 CGAAATTGTCATGCTTGCCAACTA 60.616 41.667 0.00 0.00 0.00 2.24
531 538 5.688823 TGAAGTACGAAATTGTCATGCTTG 58.311 37.500 0.00 0.00 0.00 4.01
570 577 2.414058 TGATGCGCACGACAATTTTT 57.586 40.000 14.90 0.00 0.00 1.94
579 586 1.194547 ACAAGTTAGTTGATGCGCACG 59.805 47.619 14.90 0.00 38.60 5.34
583 590 5.536554 AGAATGACAAGTTAGTTGATGCG 57.463 39.130 6.80 0.00 38.60 4.73
585 592 6.146184 ACACGAGAATGACAAGTTAGTTGATG 59.854 38.462 6.80 0.00 38.60 3.07
586 593 6.223852 ACACGAGAATGACAAGTTAGTTGAT 58.776 36.000 6.80 0.00 38.60 2.57
599 606 6.108687 AGCAATTCTATTGACACGAGAATGA 58.891 36.000 10.41 0.00 39.34 2.57
600 607 6.355397 AGCAATTCTATTGACACGAGAATG 57.645 37.500 10.41 7.29 39.34 2.67
601 608 7.115520 CGATAGCAATTCTATTGACACGAGAAT 59.884 37.037 3.70 5.53 40.25 2.40
602 609 6.417930 CGATAGCAATTCTATTGACACGAGAA 59.582 38.462 3.70 1.65 40.25 2.87
603 610 5.915196 CGATAGCAATTCTATTGACACGAGA 59.085 40.000 3.70 0.00 40.25 4.04
604 611 5.915196 TCGATAGCAATTCTATTGACACGAG 59.085 40.000 3.70 0.00 41.22 4.18
605 612 5.827666 TCGATAGCAATTCTATTGACACGA 58.172 37.500 3.70 0.00 41.22 4.35
606 613 6.510746 TTCGATAGCAATTCTATTGACACG 57.489 37.500 11.42 0.00 44.16 4.49
608 615 7.064134 ACGTTTTCGATAGCAATTCTATTGACA 59.936 33.333 11.42 6.00 44.16 3.58
643 650 0.246360 TGTCAGGTACGAGCACATGG 59.754 55.000 0.00 0.00 31.29 3.66
654 661 4.084287 ACGGAAGTACTTGATGTCAGGTA 58.916 43.478 14.14 1.36 46.88 3.08
734 749 4.320641 GGAAACATTCGAAATTCGGTGGAA 60.321 41.667 15.76 2.62 40.88 3.53
759 774 2.946329 TCTAGCACGTTTCTGGCAAAAA 59.054 40.909 0.00 0.00 0.00 1.94
765 780 2.744202 AGCAATTCTAGCACGTTTCTGG 59.256 45.455 0.00 0.00 0.00 3.86
858 881 0.321122 GGATGCGGATCTCATGGACC 60.321 60.000 16.91 0.00 0.00 4.46
859 882 0.394192 TGGATGCGGATCTCATGGAC 59.606 55.000 16.91 0.00 0.00 4.02
860 883 1.130777 TTGGATGCGGATCTCATGGA 58.869 50.000 16.91 0.00 0.00 3.41
863 886 3.295734 CGTTGGATGCGGATCTCAT 57.704 52.632 16.91 0.00 0.00 2.90
885 908 2.125673 ACCCACGCGATACAGCAC 60.126 61.111 15.93 0.00 36.85 4.40
920 943 1.311747 GGAGACCCTAGACTGCCCT 59.688 63.158 0.00 0.00 0.00 5.19
921 944 3.957919 GGAGACCCTAGACTGCCC 58.042 66.667 0.00 0.00 0.00 5.36
986 1013 4.095036 GGTGCCTTGTGATTAGTTTAGCTC 59.905 45.833 0.00 0.00 0.00 4.09
1003 1030 1.752694 GTGTTGTGTGGTGGTGCCT 60.753 57.895 0.00 0.00 38.35 4.75
1065 1092 4.078516 GACGGAGGGGACGGGTTG 62.079 72.222 0.00 0.00 35.23 3.77
1066 1093 4.312152 AGACGGAGGGGACGGGTT 62.312 66.667 0.00 0.00 35.23 4.11
1212 1239 2.002586 CTACCTGGCAATCGAACTGTG 58.997 52.381 0.00 0.00 0.00 3.66
1327 1354 4.077184 CTCGTACCGCCCCTGCAA 62.077 66.667 0.00 0.00 37.32 4.08
2098 2125 1.269413 GGACGTCTTCTTGAACCACGA 60.269 52.381 16.46 0.00 34.55 4.35
2481 2526 2.709631 GTCCTTCTTGACGTCGACG 58.290 57.895 34.58 34.58 46.33 5.12
2630 2675 7.929785 ACTACCGAATCAAGAGTAACAGAAAAA 59.070 33.333 0.00 0.00 0.00 1.94
2640 2685 2.163815 CCGTCACTACCGAATCAAGAGT 59.836 50.000 0.00 0.00 0.00 3.24
2641 2686 2.479730 CCCGTCACTACCGAATCAAGAG 60.480 54.545 0.00 0.00 0.00 2.85
2673 2722 6.707290 ACCAGACTAACATAACAGCAACATA 58.293 36.000 0.00 0.00 0.00 2.29
2678 2727 4.283467 ACTGACCAGACTAACATAACAGCA 59.717 41.667 3.76 0.00 0.00 4.41
2679 2728 4.627467 CACTGACCAGACTAACATAACAGC 59.373 45.833 3.76 0.00 0.00 4.40
2680 2729 4.627467 GCACTGACCAGACTAACATAACAG 59.373 45.833 3.76 0.00 0.00 3.16
2681 2730 4.566004 GCACTGACCAGACTAACATAACA 58.434 43.478 3.76 0.00 0.00 2.41
2682 2731 3.612860 CGCACTGACCAGACTAACATAAC 59.387 47.826 3.76 0.00 0.00 1.89
2773 2823 7.412137 TTGACAGACGCATAATATTCAGATG 57.588 36.000 0.00 0.00 0.00 2.90
2774 2824 6.146837 GCTTGACAGACGCATAATATTCAGAT 59.853 38.462 0.00 0.00 0.00 2.90
2848 2903 9.503399 GGACGAGATCCCATACTTTATTTAATT 57.497 33.333 0.00 0.00 42.46 1.40
2849 2904 7.817962 CGGACGAGATCCCATACTTTATTTAAT 59.182 37.037 0.00 0.00 46.04 1.40
2850 2905 7.149973 CGGACGAGATCCCATACTTTATTTAA 58.850 38.462 0.00 0.00 46.04 1.52
2851 2906 6.684686 CGGACGAGATCCCATACTTTATTTA 58.315 40.000 0.00 0.00 46.04 1.40
2852 2907 5.539048 CGGACGAGATCCCATACTTTATTT 58.461 41.667 0.00 0.00 46.04 1.40
2853 2908 4.560919 GCGGACGAGATCCCATACTTTATT 60.561 45.833 0.00 0.00 46.04 1.40
2854 2909 3.056749 GCGGACGAGATCCCATACTTTAT 60.057 47.826 0.00 0.00 46.04 1.40
2855 2910 2.295349 GCGGACGAGATCCCATACTTTA 59.705 50.000 0.00 0.00 46.04 1.85
2856 2911 1.068741 GCGGACGAGATCCCATACTTT 59.931 52.381 0.00 0.00 46.04 2.66
2857 2912 0.674534 GCGGACGAGATCCCATACTT 59.325 55.000 0.00 0.00 46.04 2.24
2858 2913 0.178987 AGCGGACGAGATCCCATACT 60.179 55.000 0.00 0.00 46.04 2.12
2859 2914 1.531423 TAGCGGACGAGATCCCATAC 58.469 55.000 0.00 0.00 46.04 2.39
2860 2915 2.281539 TTAGCGGACGAGATCCCATA 57.718 50.000 0.00 0.00 46.04 2.74
2861 2916 1.633774 ATTAGCGGACGAGATCCCAT 58.366 50.000 0.00 0.00 46.04 4.00
2862 2917 1.884579 GTATTAGCGGACGAGATCCCA 59.115 52.381 0.00 0.00 46.04 4.37
2863 2918 1.884579 TGTATTAGCGGACGAGATCCC 59.115 52.381 0.00 0.00 46.04 3.85
2864 2919 3.851976 ATGTATTAGCGGACGAGATCC 57.148 47.619 0.00 0.00 45.20 3.36
2865 2920 5.800941 CCTTAATGTATTAGCGGACGAGATC 59.199 44.000 0.00 0.00 0.00 2.75
2866 2921 5.475909 TCCTTAATGTATTAGCGGACGAGAT 59.524 40.000 0.00 0.00 0.00 2.75
2867 2922 4.823442 TCCTTAATGTATTAGCGGACGAGA 59.177 41.667 0.00 0.00 0.00 4.04
2868 2923 5.117355 TCCTTAATGTATTAGCGGACGAG 57.883 43.478 0.00 0.00 0.00 4.18
2869 2924 5.717078 ATCCTTAATGTATTAGCGGACGA 57.283 39.130 0.00 0.00 31.20 4.20
2870 2925 6.384224 TGTATCCTTAATGTATTAGCGGACG 58.616 40.000 6.79 0.00 31.20 4.79
2871 2926 8.773404 ATTGTATCCTTAATGTATTAGCGGAC 57.227 34.615 6.79 0.00 31.20 4.79
2872 2927 8.590204 TGATTGTATCCTTAATGTATTAGCGGA 58.410 33.333 7.00 7.00 32.21 5.54
2873 2928 8.771920 TGATTGTATCCTTAATGTATTAGCGG 57.228 34.615 0.00 0.00 0.00 5.52
2874 2929 8.873830 CCTGATTGTATCCTTAATGTATTAGCG 58.126 37.037 0.00 0.00 0.00 4.26
2875 2930 9.167311 CCCTGATTGTATCCTTAATGTATTAGC 57.833 37.037 0.00 0.00 0.00 3.09
2876 2931 9.672673 CCCCTGATTGTATCCTTAATGTATTAG 57.327 37.037 0.00 0.00 0.00 1.73
2877 2932 8.611257 CCCCCTGATTGTATCCTTAATGTATTA 58.389 37.037 0.00 0.00 0.00 0.98
2878 2933 7.297108 TCCCCCTGATTGTATCCTTAATGTATT 59.703 37.037 0.00 0.00 0.00 1.89
2879 2934 6.797540 TCCCCCTGATTGTATCCTTAATGTAT 59.202 38.462 0.00 0.00 0.00 2.29
2880 2935 6.154645 TCCCCCTGATTGTATCCTTAATGTA 58.845 40.000 0.00 0.00 0.00 2.29
2881 2936 4.981647 TCCCCCTGATTGTATCCTTAATGT 59.018 41.667 0.00 0.00 0.00 2.71
2882 2937 5.310594 TCTCCCCCTGATTGTATCCTTAATG 59.689 44.000 0.00 0.00 0.00 1.90
2883 2938 5.486332 TCTCCCCCTGATTGTATCCTTAAT 58.514 41.667 0.00 0.00 0.00 1.40
2884 2939 4.903149 TCTCCCCCTGATTGTATCCTTAA 58.097 43.478 0.00 0.00 0.00 1.85
2885 2940 4.569676 TCTCCCCCTGATTGTATCCTTA 57.430 45.455 0.00 0.00 0.00 2.69
2886 2941 3.438131 TCTCCCCCTGATTGTATCCTT 57.562 47.619 0.00 0.00 0.00 3.36
2887 2942 3.438131 TTCTCCCCCTGATTGTATCCT 57.562 47.619 0.00 0.00 0.00 3.24
2888 2943 4.207955 GTTTTCTCCCCCTGATTGTATCC 58.792 47.826 0.00 0.00 0.00 2.59
2889 2944 4.079730 AGGTTTTCTCCCCCTGATTGTATC 60.080 45.833 0.00 0.00 0.00 2.24
2890 2945 3.858638 AGGTTTTCTCCCCCTGATTGTAT 59.141 43.478 0.00 0.00 0.00 2.29
2891 2946 3.265489 AGGTTTTCTCCCCCTGATTGTA 58.735 45.455 0.00 0.00 0.00 2.41
2892 2947 2.041755 GAGGTTTTCTCCCCCTGATTGT 59.958 50.000 0.00 0.00 36.52 2.71
2893 2948 2.728007 GAGGTTTTCTCCCCCTGATTG 58.272 52.381 0.00 0.00 36.52 2.67
2903 2958 5.592104 TTCTTTGGTTTGGAGGTTTTCTC 57.408 39.130 0.00 0.00 41.71 2.87
2904 2959 5.247337 TGTTTCTTTGGTTTGGAGGTTTTCT 59.753 36.000 0.00 0.00 0.00 2.52
2905 2960 5.483811 TGTTTCTTTGGTTTGGAGGTTTTC 58.516 37.500 0.00 0.00 0.00 2.29
2906 2961 5.012664 ACTGTTTCTTTGGTTTGGAGGTTTT 59.987 36.000 0.00 0.00 0.00 2.43
2907 2962 4.530553 ACTGTTTCTTTGGTTTGGAGGTTT 59.469 37.500 0.00 0.00 0.00 3.27
2908 2963 4.093743 ACTGTTTCTTTGGTTTGGAGGTT 58.906 39.130 0.00 0.00 0.00 3.50
2909 2964 3.708451 ACTGTTTCTTTGGTTTGGAGGT 58.292 40.909 0.00 0.00 0.00 3.85
2910 2965 5.534654 TCATACTGTTTCTTTGGTTTGGAGG 59.465 40.000 0.00 0.00 0.00 4.30
2911 2966 6.633500 TCATACTGTTTCTTTGGTTTGGAG 57.367 37.500 0.00 0.00 0.00 3.86
2912 2967 5.009610 GCTCATACTGTTTCTTTGGTTTGGA 59.990 40.000 0.00 0.00 0.00 3.53
2913 2968 5.222631 GCTCATACTGTTTCTTTGGTTTGG 58.777 41.667 0.00 0.00 0.00 3.28
2914 2969 5.222631 GGCTCATACTGTTTCTTTGGTTTG 58.777 41.667 0.00 0.00 0.00 2.93
2915 2970 4.023193 CGGCTCATACTGTTTCTTTGGTTT 60.023 41.667 0.00 0.00 0.00 3.27
2916 2971 3.502211 CGGCTCATACTGTTTCTTTGGTT 59.498 43.478 0.00 0.00 0.00 3.67
2917 2972 3.074412 CGGCTCATACTGTTTCTTTGGT 58.926 45.455 0.00 0.00 0.00 3.67
2918 2973 3.334691 TCGGCTCATACTGTTTCTTTGG 58.665 45.455 0.00 0.00 0.00 3.28
2919 2974 5.551760 AATCGGCTCATACTGTTTCTTTG 57.448 39.130 0.00 0.00 0.00 2.77
2920 2975 5.294552 GCTAATCGGCTCATACTGTTTCTTT 59.705 40.000 0.00 0.00 0.00 2.52
2921 2976 4.811557 GCTAATCGGCTCATACTGTTTCTT 59.188 41.667 0.00 0.00 0.00 2.52
2922 2977 4.100189 AGCTAATCGGCTCATACTGTTTCT 59.900 41.667 0.00 0.00 38.24 2.52
2923 2978 4.372656 AGCTAATCGGCTCATACTGTTTC 58.627 43.478 0.00 0.00 38.24 2.78
2924 2979 4.408182 AGCTAATCGGCTCATACTGTTT 57.592 40.909 0.00 0.00 38.24 2.83
2925 2980 5.730296 ATAGCTAATCGGCTCATACTGTT 57.270 39.130 0.00 0.00 42.97 3.16
2926 2981 5.620205 CGAATAGCTAATCGGCTCATACTGT 60.620 44.000 21.07 0.00 42.97 3.55
2927 2982 4.795795 CGAATAGCTAATCGGCTCATACTG 59.204 45.833 21.07 0.00 42.97 2.74
2928 2983 4.675671 GCGAATAGCTAATCGGCTCATACT 60.676 45.833 27.60 0.00 42.97 2.12
2929 2984 3.548268 GCGAATAGCTAATCGGCTCATAC 59.452 47.826 27.60 9.52 42.97 2.39
2930 2985 3.770666 GCGAATAGCTAATCGGCTCATA 58.229 45.455 27.60 0.00 42.97 2.15
2931 2986 2.611518 GCGAATAGCTAATCGGCTCAT 58.388 47.619 27.60 0.00 42.97 2.90
2932 2987 2.065993 GCGAATAGCTAATCGGCTCA 57.934 50.000 27.60 0.00 42.97 4.26
3063 5894 4.536090 TGTGGAGATGGATTGTAAGGAAGT 59.464 41.667 0.00 0.00 0.00 3.01
3110 5941 3.869481 GCCTTGGAGTTTGGCCAA 58.131 55.556 16.05 16.05 42.81 4.52
3206 6039 1.290955 GTTGTCCGGGATGACACGA 59.709 57.895 0.00 0.00 46.86 4.35
3212 6045 2.045340 GGGTGGTTGTCCGGGATG 60.045 66.667 0.00 0.00 36.30 3.51
3299 6132 1.279271 CTCCTGAAAGATGGAACCCGT 59.721 52.381 0.00 0.00 34.07 5.28
3334 6168 1.906824 TGACGAAGAAGGCTCGGGT 60.907 57.895 0.00 0.00 0.00 5.28
3336 6170 1.446272 GGTGACGAAGAAGGCTCGG 60.446 63.158 0.00 0.00 0.00 4.63
3388 6222 1.582968 CTTCGGCTGTTGCATGCTT 59.417 52.632 20.33 0.00 41.91 3.91
3413 6248 1.147376 CGGGATGGGGTTCGCATAA 59.853 57.895 0.00 0.00 37.16 1.90
3414 6249 2.825982 CGGGATGGGGTTCGCATA 59.174 61.111 0.00 0.00 37.16 3.14
3486 6321 0.684805 GAGAAGCTCGGGAGGAGGAA 60.685 60.000 0.00 0.00 43.36 3.36
3535 6370 3.797039 CGGGCATTGACTCTAATCAGAA 58.203 45.455 0.00 0.00 0.00 3.02
3536 6371 2.483714 GCGGGCATTGACTCTAATCAGA 60.484 50.000 0.00 0.00 0.00 3.27
3586 6421 4.778143 GGCGGACTTGGCGGACAT 62.778 66.667 0.00 0.00 0.00 3.06
3591 6426 3.423154 GACTTGGCGGACTTGGCG 61.423 66.667 0.00 0.00 37.19 5.69
3592 6427 3.056328 GGACTTGGCGGACTTGGC 61.056 66.667 0.00 0.00 0.00 4.52
3593 6428 2.742372 CGGACTTGGCGGACTTGG 60.742 66.667 0.00 0.00 0.00 3.61
3594 6429 3.423154 GCGGACTTGGCGGACTTG 61.423 66.667 0.00 0.00 0.00 3.16
3595 6430 4.699522 GGCGGACTTGGCGGACTT 62.700 66.667 0.00 0.00 0.00 3.01
3600 6435 4.697756 TTCTGGGCGGACTTGGCG 62.698 66.667 0.00 0.00 34.76 5.69
3660 6495 2.290122 CTGCGTGCGGAAGAGAGGAT 62.290 60.000 0.00 0.00 0.00 3.24
3688 6523 2.744709 ACGAATCAAACCGGGCGG 60.745 61.111 6.32 0.00 42.03 6.13
3819 6654 3.553715 CGGGATCGTCATCATCTGTCAAT 60.554 47.826 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.