Multiple sequence alignment - TraesCS4D01G110900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G110900 chr4D 100.000 4442 0 0 984 5425 91242191 91237750 0.000000e+00 8203.0
1 TraesCS4D01G110900 chr4D 100.000 718 0 0 1 718 91243174 91242457 0.000000e+00 1327.0
2 TraesCS4D01G110900 chr4D 92.523 107 3 2 2948 3054 110081036 110080935 1.220000e-31 148.0
3 TraesCS4D01G110900 chr4D 91.743 109 4 1 2946 3054 494042365 494042468 4.380000e-31 147.0
4 TraesCS4D01G110900 chr4D 100.000 78 0 0 3073 3150 91240187 91240110 1.570000e-30 145.0
5 TraesCS4D01G110900 chr4D 95.122 41 2 0 5152 5192 81663993 81663953 1.260000e-06 65.8
6 TraesCS4D01G110900 chr4A 96.574 2014 60 7 985 2992 503632559 503630549 0.000000e+00 3328.0
7 TraesCS4D01G110900 chr4A 94.960 1250 29 12 3857 5095 503629735 503628509 0.000000e+00 1929.0
8 TraesCS4D01G110900 chr4A 93.964 729 31 7 3098 3814 503630466 503629739 0.000000e+00 1090.0
9 TraesCS4D01G110900 chr4A 91.540 721 38 7 1 718 503633332 503632632 0.000000e+00 972.0
10 TraesCS4D01G110900 chr4B 92.857 2016 70 22 3138 5141 128057071 128055118 0.000000e+00 2857.0
11 TraesCS4D01G110900 chr4B 91.716 2016 108 34 985 2954 128059072 128057070 0.000000e+00 2743.0
12 TraesCS4D01G110900 chr4B 94.258 627 23 6 97 718 128059765 128059147 0.000000e+00 946.0
13 TraesCS4D01G110900 chr4B 94.872 78 3 1 1 78 128060063 128059987 2.650000e-23 121.0
14 TraesCS4D01G110900 chr4B 89.091 55 4 2 2900 2954 209271812 209271864 3.510000e-07 67.6
15 TraesCS4D01G110900 chr7D 86.498 237 21 11 5188 5418 558790973 558790742 3.240000e-62 250.0
16 TraesCS4D01G110900 chr7D 91.111 45 1 3 5152 5194 518683837 518683880 2.110000e-04 58.4
17 TraesCS4D01G110900 chr6D 86.076 237 22 11 5180 5410 350910181 350910412 1.510000e-60 244.0
18 TraesCS4D01G110900 chr6D 84.810 237 28 6 5186 5418 380997299 380997531 1.180000e-56 231.0
19 TraesCS4D01G110900 chr6D 92.308 65 4 1 3075 3139 230786383 230786320 2.080000e-14 91.6
20 TraesCS4D01G110900 chr2B 83.534 249 36 5 5180 5425 787139248 787139002 1.520000e-55 228.0
21 TraesCS4D01G110900 chr1B 87.709 179 20 2 5241 5418 304386969 304386792 1.980000e-49 207.0
22 TraesCS4D01G110900 chr6A 82.969 229 34 5 5189 5414 492822022 492821796 9.210000e-48 202.0
23 TraesCS4D01G110900 chr6A 89.744 117 6 3 2942 3058 499211801 499211691 1.570000e-30 145.0
24 TraesCS4D01G110900 chr3A 85.000 200 22 5 5229 5425 725229750 725229556 4.290000e-46 196.0
25 TraesCS4D01G110900 chr3A 84.422 199 26 4 5229 5425 725145815 725145620 1.990000e-44 191.0
26 TraesCS4D01G110900 chr3A 89.744 117 5 5 2942 3058 647618174 647618283 5.660000e-30 143.0
27 TraesCS4D01G110900 chr6B 84.184 196 24 6 5231 5424 529261447 529261257 3.340000e-42 183.0
28 TraesCS4D01G110900 chr6B 92.045 88 6 1 5186 5272 2631274 2631361 7.380000e-24 122.0
29 TraesCS4D01G110900 chr5B 91.964 112 7 1 2950 3061 315893337 315893446 7.280000e-34 156.0
30 TraesCS4D01G110900 chr5B 91.964 112 7 2 2943 3054 398071572 398071463 7.280000e-34 156.0
31 TraesCS4D01G110900 chr5B 87.023 131 15 2 3540 3670 261191179 261191307 4.380000e-31 147.0
32 TraesCS4D01G110900 chr5B 85.075 67 6 3 5118 5180 214930158 214930224 1.260000e-06 65.8
33 TraesCS4D01G110900 chr2A 91.964 112 2 4 2948 3058 79162538 79162433 3.380000e-32 150.0
34 TraesCS4D01G110900 chr2A 91.589 107 7 2 2949 3054 53597442 53597337 4.380000e-31 147.0
35 TraesCS4D01G110900 chr2A 100.000 36 0 0 5150 5185 7509993 7509958 3.510000e-07 67.6
36 TraesCS4D01G110900 chr3D 81.714 175 27 5 5254 5425 153072230 153072402 2.040000e-29 141.0
37 TraesCS4D01G110900 chr3D 94.737 38 1 1 5152 5189 499945115 499945151 2.110000e-04 58.4
38 TraesCS4D01G110900 chr5D 89.565 115 5 4 2948 3062 473790100 473789993 7.330000e-29 139.0
39 TraesCS4D01G110900 chr5D 89.744 78 8 0 4158 4235 210676821 210676744 3.460000e-17 100.0
40 TraesCS4D01G110900 chr5D 88.235 51 3 3 5152 5200 37141286 37141237 2.110000e-04 58.4
41 TraesCS4D01G110900 chr5D 91.111 45 1 3 5152 5194 540267664 540267707 2.110000e-04 58.4
42 TraesCS4D01G110900 chr3B 90.141 71 5 2 3073 3142 667714448 667714379 2.080000e-14 91.6
43 TraesCS4D01G110900 chr2D 92.188 64 4 1 3088 3150 326251163 326251100 7.480000e-14 89.8
44 TraesCS4D01G110900 chr2D 93.023 43 3 0 5180 5222 112556887 112556929 4.540000e-06 63.9
45 TraesCS4D01G110900 chr1D 90.000 70 3 3 3074 3139 14482449 14482518 2.690000e-13 87.9
46 TraesCS4D01G110900 chr1A 90.000 70 3 3 3074 3139 15435338 15435269 2.690000e-13 87.9
47 TraesCS4D01G110900 chr1A 88.462 52 3 3 5151 5200 2481505 2481455 5.870000e-05 60.2
48 TraesCS4D01G110900 chr7A 89.552 67 7 0 3073 3139 516148339 516148405 9.680000e-13 86.1
49 TraesCS4D01G110900 chr5A 82.796 93 9 4 3073 3165 590461953 590461868 5.830000e-10 76.8
50 TraesCS4D01G110900 chr5A 96.970 33 0 1 5111 5143 706069406 706069437 3.000000e-03 54.7
51 TraesCS4D01G110900 chr7B 86.957 69 5 2 5115 5182 740163670 740163605 2.100000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G110900 chr4D 91237750 91243174 5424 True 3225.00 8203 100.00000 1 5425 3 chr4D.!!$R3 5424
1 TraesCS4D01G110900 chr4A 503628509 503633332 4823 True 1829.75 3328 94.25950 1 5095 4 chr4A.!!$R1 5094
2 TraesCS4D01G110900 chr4B 128055118 128060063 4945 True 1666.75 2857 93.42575 1 5141 4 chr4B.!!$R1 5140

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
189 400 0.591236 CAAAACGCACGGACCAGTTG 60.591 55.000 0.00 0.0 0.00 3.16 F
555 771 0.828022 ACACCGCCGGATATTCTTCA 59.172 50.000 11.71 0.0 0.00 3.02 F
600 816 1.079405 CAGGCCGTATCAACCGTGT 60.079 57.895 0.00 0.0 0.00 4.49 F
1552 1771 1.134610 TCCCCTTTCGCTTTATCCGTC 60.135 52.381 0.00 0.0 0.00 4.79 F
2081 2301 1.230324 GCGTCCTGAAAGAAGCAACT 58.770 50.000 0.00 0.0 40.46 3.16 F
3288 3552 0.517316 AAAAGCTAGGAACGCAAGCG 59.483 50.000 13.50 13.5 41.19 4.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2052 2272 1.229428 TTCAGGACGCAAGCTTTGAG 58.771 50.000 0.00 0.0 45.62 3.02 R
2096 2316 2.548480 AGAAGTTGTAAGCGAAGGCAAC 59.452 45.455 0.00 0.0 43.41 4.17 R
2572 2832 4.343526 TCCTCAGGAAGCAGAAGTGATATC 59.656 45.833 0.00 0.0 0.00 1.63 R
2922 3186 0.034960 GTTCTTCTCTTCCAGCCCCC 60.035 60.000 0.00 0.0 0.00 5.40 R
3373 3647 2.159156 GGACAGTGTCCGCATACATACA 60.159 50.000 26.12 0.0 43.14 2.29 R
5238 5526 0.175073 GACTAGGTGCCGGTTAGTGG 59.825 60.000 1.90 0.0 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 74 5.971763 ACAACACTGCAGGTTGAAATTTTA 58.028 33.333 34.89 0.00 46.56 1.52
139 341 4.856801 CCGATGCCAAGGGGTCCG 62.857 72.222 0.00 0.00 36.17 4.79
140 342 4.096003 CGATGCCAAGGGGTCCGT 62.096 66.667 0.00 0.00 36.17 4.69
142 344 3.699134 GATGCCAAGGGGTCCGTCC 62.699 68.421 0.00 0.00 36.17 4.79
185 396 2.515057 AGCAAAACGCACGGACCA 60.515 55.556 0.00 0.00 46.13 4.02
186 397 2.051345 GCAAAACGCACGGACCAG 60.051 61.111 0.00 0.00 41.79 4.00
187 398 2.830285 GCAAAACGCACGGACCAGT 61.830 57.895 0.00 0.00 41.79 4.00
188 399 1.725066 CAAAACGCACGGACCAGTT 59.275 52.632 0.00 0.00 0.00 3.16
189 400 0.591236 CAAAACGCACGGACCAGTTG 60.591 55.000 0.00 0.00 0.00 3.16
190 401 2.331019 AAAACGCACGGACCAGTTGC 62.331 55.000 0.00 0.00 0.00 4.17
191 402 3.750373 AACGCACGGACCAGTTGCT 62.750 57.895 7.84 0.00 0.00 3.91
192 403 3.414700 CGCACGGACCAGTTGCTC 61.415 66.667 7.84 0.00 0.00 4.26
193 404 3.414700 GCACGGACCAGTTGCTCG 61.415 66.667 3.04 0.00 0.00 5.03
194 405 3.414700 CACGGACCAGTTGCTCGC 61.415 66.667 0.00 0.00 0.00 5.03
195 406 3.616721 ACGGACCAGTTGCTCGCT 61.617 61.111 0.00 0.00 0.00 4.93
196 407 2.811317 CGGACCAGTTGCTCGCTC 60.811 66.667 0.00 0.00 0.00 5.03
197 408 2.435059 GGACCAGTTGCTCGCTCC 60.435 66.667 0.00 0.00 0.00 4.70
462 673 3.241515 TACCACGGGCACATTCGCA 62.242 57.895 0.00 0.00 0.00 5.10
555 771 0.828022 ACACCGCCGGATATTCTTCA 59.172 50.000 11.71 0.00 0.00 3.02
559 775 1.202651 CCGCCGGATATTCTTCACCTT 60.203 52.381 5.05 0.00 0.00 3.50
584 800 2.721231 CCACCGCACAAACCACAG 59.279 61.111 0.00 0.00 0.00 3.66
600 816 1.079405 CAGGCCGTATCAACCGTGT 60.079 57.895 0.00 0.00 0.00 4.49
646 862 2.009108 CATCGAGTTCATGCACCGG 58.991 57.895 0.00 0.00 0.00 5.28
659 875 4.003788 ACCGGGTCCACGCTGAAG 62.004 66.667 6.32 0.00 0.00 3.02
1552 1771 1.134610 TCCCCTTTCGCTTTATCCGTC 60.135 52.381 0.00 0.00 0.00 4.79
1639 1858 2.047465 CTCCTTGCTCGTGCTGCT 60.047 61.111 11.19 0.00 40.48 4.24
1647 1866 3.641437 TGCTCGTGCTGCTTAATTTTT 57.359 38.095 11.19 0.00 40.48 1.94
1901 2121 5.512473 TGTTTGTAGTCCATAAACGCAAAC 58.488 37.500 16.03 16.03 42.81 2.93
1955 2175 6.690194 AATTAATTGACTAGCTGAAGCCAG 57.310 37.500 0.00 0.00 43.38 4.85
2002 2222 4.631131 AGTTGGTTGCTTTCCTTAATTGC 58.369 39.130 0.00 0.00 0.00 3.56
2052 2272 7.117379 GGTAACACTTGTATGAACCTGACTAAC 59.883 40.741 0.00 0.00 0.00 2.34
2081 2301 1.230324 GCGTCCTGAAAGAAGCAACT 58.770 50.000 0.00 0.00 40.46 3.16
2096 2316 5.411669 AGAAGCAACTAGGATAAACAAACGG 59.588 40.000 0.00 0.00 0.00 4.44
2170 2423 3.907474 TGTTCCCCTCATGAACAGTTCTA 59.093 43.478 14.51 1.75 45.19 2.10
2210 2463 7.541162 TGACATTTCTATGAGCATTTCCTTTG 58.459 34.615 0.00 0.00 35.65 2.77
2386 2640 5.105567 TGTGTTACCCTCTGTTTTCTGAA 57.894 39.130 0.00 0.00 0.00 3.02
2402 2656 6.915544 TTTCTGAATCTCATCTTCCATTCG 57.084 37.500 0.00 0.00 0.00 3.34
2477 2737 8.045176 AGTTGGTAGAGCTTTTGATAATTGAC 57.955 34.615 0.00 0.00 0.00 3.18
2572 2832 4.559251 GCTGTCTGTCACTACGAAATACAG 59.441 45.833 0.00 0.00 39.10 2.74
2611 2871 4.455877 CCTGAGGACTCACCATTTTGTTAC 59.544 45.833 0.00 0.00 42.04 2.50
2634 2896 5.170748 CCAACTTGTTTTCTTGCTTGTCTT 58.829 37.500 0.00 0.00 0.00 3.01
2694 2956 5.522315 TCCACCCACCTTTAATGAATGTA 57.478 39.130 0.00 0.00 0.00 2.29
2922 3186 0.828343 CCTTACTAGAGAGGGGCCCG 60.828 65.000 18.95 3.77 0.00 6.13
2962 3226 4.213513 ACCTTACAATACTACTCCCTCCG 58.786 47.826 0.00 0.00 0.00 4.63
2992 3256 8.988934 CAAAATAAGTGTCTCAAGCTTAGTACA 58.011 33.333 0.00 0.36 0.00 2.90
2993 3257 9.555727 AAAATAAGTGTCTCAAGCTTAGTACAA 57.444 29.630 0.00 0.00 0.00 2.41
2995 3259 5.793030 AGTGTCTCAAGCTTAGTACAACT 57.207 39.130 0.00 0.00 0.00 3.16
2997 3261 6.583562 AGTGTCTCAAGCTTAGTACAACTTT 58.416 36.000 0.00 0.00 0.00 2.66
2998 3262 6.480320 AGTGTCTCAAGCTTAGTACAACTTTG 59.520 38.462 0.00 0.00 0.00 2.77
2999 3263 6.258068 GTGTCTCAAGCTTAGTACAACTTTGT 59.742 38.462 0.00 0.00 44.86 2.83
3000 3264 7.437267 GTGTCTCAAGCTTAGTACAACTTTGTA 59.563 37.037 0.00 0.00 42.35 2.41
3031 3295 9.530633 ACTAAAGTTAGTACAAAGTTGAGACAG 57.469 33.333 1.81 0.00 41.92 3.51
3032 3296 9.530633 CTAAAGTTAGTACAAAGTTGAGACAGT 57.469 33.333 0.00 0.00 0.00 3.55
3033 3297 8.788325 AAAGTTAGTACAAAGTTGAGACAGTT 57.212 30.769 0.00 0.00 0.00 3.16
3034 3298 9.880157 AAAGTTAGTACAAAGTTGAGACAGTTA 57.120 29.630 0.00 0.00 0.00 2.24
3040 3304 8.621286 AGTACAAAGTTGAGACAGTTATTTTGG 58.379 33.333 0.00 0.00 0.00 3.28
3041 3305 6.805713 ACAAAGTTGAGACAGTTATTTTGGG 58.194 36.000 0.00 0.00 0.00 4.12
3042 3306 6.605594 ACAAAGTTGAGACAGTTATTTTGGGA 59.394 34.615 0.00 0.00 0.00 4.37
3043 3307 6.635030 AAGTTGAGACAGTTATTTTGGGAC 57.365 37.500 0.00 0.00 0.00 4.46
3044 3308 5.941788 AGTTGAGACAGTTATTTTGGGACT 58.058 37.500 0.00 0.00 0.00 3.85
3045 3309 5.765182 AGTTGAGACAGTTATTTTGGGACTG 59.235 40.000 1.51 1.51 44.77 3.51
3046 3310 5.560722 TGAGACAGTTATTTTGGGACTGA 57.439 39.130 9.45 0.00 42.54 3.41
3047 3311 5.551233 TGAGACAGTTATTTTGGGACTGAG 58.449 41.667 9.45 0.00 42.54 3.35
3048 3312 4.911390 AGACAGTTATTTTGGGACTGAGG 58.089 43.478 9.45 0.00 42.54 3.86
3049 3313 4.010349 GACAGTTATTTTGGGACTGAGGG 58.990 47.826 9.45 0.00 42.54 4.30
3051 3315 4.263506 ACAGTTATTTTGGGACTGAGGGAG 60.264 45.833 9.45 0.00 42.54 4.30
3052 3316 3.916989 AGTTATTTTGGGACTGAGGGAGT 59.083 43.478 0.00 0.00 37.76 3.85
3053 3317 5.045869 CAGTTATTTTGGGACTGAGGGAGTA 60.046 44.000 0.00 0.00 42.54 2.59
3054 3318 5.550403 AGTTATTTTGGGACTGAGGGAGTAA 59.450 40.000 0.00 0.00 33.83 2.24
3055 3319 6.045106 AGTTATTTTGGGACTGAGGGAGTAAA 59.955 38.462 0.00 0.00 33.83 2.01
3056 3320 5.536497 ATTTTGGGACTGAGGGAGTAAAT 57.464 39.130 0.00 0.00 33.83 1.40
3057 3321 5.333566 TTTTGGGACTGAGGGAGTAAATT 57.666 39.130 0.00 0.00 33.83 1.82
3058 3322 6.457159 TTTTGGGACTGAGGGAGTAAATTA 57.543 37.500 0.00 0.00 33.83 1.40
3059 3323 5.431179 TTGGGACTGAGGGAGTAAATTAC 57.569 43.478 0.00 0.00 33.83 1.89
3061 3325 5.036916 TGGGACTGAGGGAGTAAATTACAT 58.963 41.667 5.89 0.00 33.83 2.29
3063 3327 5.130477 GGGACTGAGGGAGTAAATTACATGA 59.870 44.000 0.00 0.00 33.83 3.07
3064 3328 6.284459 GGACTGAGGGAGTAAATTACATGAG 58.716 44.000 0.00 0.00 33.83 2.90
3065 3329 6.240549 ACTGAGGGAGTAAATTACATGAGG 57.759 41.667 0.00 0.00 30.86 3.86
3066 3330 5.131142 ACTGAGGGAGTAAATTACATGAGGG 59.869 44.000 0.00 0.00 30.86 4.30
3067 3331 5.285401 TGAGGGAGTAAATTACATGAGGGA 58.715 41.667 0.00 0.00 0.00 4.20
3068 3332 5.366768 TGAGGGAGTAAATTACATGAGGGAG 59.633 44.000 0.00 0.00 0.00 4.30
3069 3333 5.289510 AGGGAGTAAATTACATGAGGGAGT 58.710 41.667 0.00 0.00 0.00 3.85
3070 3334 6.449956 AGGGAGTAAATTACATGAGGGAGTA 58.550 40.000 0.00 0.00 0.00 2.59
3071 3335 6.326843 AGGGAGTAAATTACATGAGGGAGTAC 59.673 42.308 0.00 0.00 0.00 2.73
3073 3337 7.210873 GGAGTAAATTACATGAGGGAGTACAG 58.789 42.308 0.00 0.00 0.00 2.74
3075 3339 8.834004 AGTAAATTACATGAGGGAGTACAGTA 57.166 34.615 0.00 0.00 0.00 2.74
3076 3340 8.693625 AGTAAATTACATGAGGGAGTACAGTAC 58.306 37.037 0.00 2.05 0.00 2.73
3077 3341 7.490657 AAATTACATGAGGGAGTACAGTACA 57.509 36.000 13.37 0.00 0.00 2.90
3080 3344 4.417437 ACATGAGGGAGTACAGTACAACT 58.583 43.478 13.37 7.41 0.00 3.16
3081 3345 4.838986 ACATGAGGGAGTACAGTACAACTT 59.161 41.667 13.37 1.55 0.00 2.66
3082 3346 5.307196 ACATGAGGGAGTACAGTACAACTTT 59.693 40.000 13.37 0.00 0.00 2.66
3083 3347 5.209818 TGAGGGAGTACAGTACAACTTTG 57.790 43.478 13.37 0.00 0.00 2.77
3084 3348 4.652421 TGAGGGAGTACAGTACAACTTTGT 59.348 41.667 13.37 0.00 44.86 2.83
3085 3349 5.834742 TGAGGGAGTACAGTACAACTTTGTA 59.165 40.000 13.37 0.00 42.35 2.41
3116 3380 9.530633 ACTAAAGTTAGTACAAAGTTGAGACAG 57.469 33.333 1.81 0.00 41.92 3.51
3117 3381 9.530633 CTAAAGTTAGTACAAAGTTGAGACAGT 57.469 33.333 0.00 0.00 0.00 3.55
3118 3382 8.788325 AAAGTTAGTACAAAGTTGAGACAGTT 57.212 30.769 0.00 0.00 0.00 3.16
3129 3393 5.941788 AGTTGAGACAGTTATTTTGGGACT 58.058 37.500 0.00 0.00 0.00 3.85
3238 3502 6.922247 TTGTTAAGGAAAACGTATGACACA 57.078 33.333 0.00 0.00 31.76 3.72
3240 3504 5.816258 TGTTAAGGAAAACGTATGACACACA 59.184 36.000 0.00 0.00 31.76 3.72
3286 3550 4.142600 AGCATAAAAAGCTAGGAACGCAAG 60.143 41.667 0.00 0.00 41.32 4.01
3288 3552 0.517316 AAAAGCTAGGAACGCAAGCG 59.483 50.000 13.50 13.50 41.19 4.68
3292 3556 2.126228 TAGGAACGCAAGCGGACG 60.126 61.111 19.30 0.00 44.69 4.79
3373 3647 4.508124 GTGCTGCTCTAATTATACGCTTGT 59.492 41.667 0.00 0.00 0.00 3.16
3375 3649 4.508124 GCTGCTCTAATTATACGCTTGTGT 59.492 41.667 0.00 0.00 0.00 3.72
3410 3685 0.037232 GTCCGCCTGCATCCCTATAC 60.037 60.000 0.00 0.00 0.00 1.47
3692 3968 8.905103 TTATTTACGCTGGAAAAGAAATAAGC 57.095 30.769 0.00 0.00 29.77 3.09
3854 4130 1.022735 GTGATTGCTCATCAGGCCTG 58.977 55.000 27.87 27.87 42.98 4.85
3880 4156 9.341899 GTGACTGTGATAACCAATATTTTGTTC 57.658 33.333 3.92 0.00 0.00 3.18
3906 4182 6.596309 TCATCTTACAGTCTCTGTGTTGAT 57.404 37.500 11.92 9.36 45.01 2.57
3998 4274 1.466167 CAGTCCATGGAAGAACAAGCG 59.534 52.381 18.20 0.00 0.00 4.68
4166 4442 1.186200 ATCTGTTCCGTGCAGCTCTA 58.814 50.000 0.00 0.00 34.21 2.43
4178 4454 1.878734 GCAGCTCTAAATGATGCCCTC 59.121 52.381 0.00 0.00 40.47 4.30
4330 4606 2.171448 AGATGCACTACCAAGGTCATCC 59.829 50.000 12.45 0.00 36.79 3.51
4705 4983 2.875296 TGGAATGGTTTCTGGTTGGAG 58.125 47.619 0.00 0.00 32.16 3.86
4737 5015 0.179040 TCTGGTTTCCGGTTGGTGAC 60.179 55.000 0.00 0.00 36.30 3.67
4899 5186 5.695851 ACTGGCTTTGTCTAAATTGTCAG 57.304 39.130 0.00 0.00 0.00 3.51
4906 5193 7.025963 GCTTTGTCTAAATTGTCAGATTCCTG 58.974 38.462 0.00 0.00 41.74 3.86
5029 5317 2.223340 CCACCTGCAAATATCTGTTCGC 60.223 50.000 0.00 0.00 0.00 4.70
5078 5366 0.519961 GGCGCGGAAAATAACACTGT 59.480 50.000 8.83 0.00 0.00 3.55
5111 5399 8.230486 ACAACTTATCGTTTCTGTTGAATCATC 58.770 33.333 10.50 0.00 39.98 2.92
5122 5410 6.115446 TCTGTTGAATCATCCATTGTACTCC 58.885 40.000 0.00 0.00 0.00 3.85
5126 5414 4.202253 TGAATCATCCATTGTACTCCCTCG 60.202 45.833 0.00 0.00 0.00 4.63
5131 5419 3.443052 TCCATTGTACTCCCTCGGTAAA 58.557 45.455 0.00 0.00 0.00 2.01
5132 5420 3.449737 TCCATTGTACTCCCTCGGTAAAG 59.550 47.826 0.00 0.00 0.00 1.85
5133 5421 3.449737 CCATTGTACTCCCTCGGTAAAGA 59.550 47.826 0.00 0.00 0.00 2.52
5141 5429 8.980596 TGTACTCCCTCGGTAAAGAAATATAAA 58.019 33.333 0.00 0.00 0.00 1.40
5142 5430 9.822185 GTACTCCCTCGGTAAAGAAATATAAAA 57.178 33.333 0.00 0.00 0.00 1.52
5143 5431 8.728337 ACTCCCTCGGTAAAGAAATATAAAAC 57.272 34.615 0.00 0.00 0.00 2.43
5144 5432 8.546322 ACTCCCTCGGTAAAGAAATATAAAACT 58.454 33.333 0.00 0.00 0.00 2.66
5196 5484 9.582431 TTAGATCACTAAGAACATTTCTAACCG 57.418 33.333 0.00 0.00 39.61 4.44
5197 5485 7.837863 AGATCACTAAGAACATTTCTAACCGA 58.162 34.615 0.00 0.00 39.61 4.69
5198 5486 8.478877 AGATCACTAAGAACATTTCTAACCGAT 58.521 33.333 0.00 0.00 39.61 4.18
5199 5487 8.649973 ATCACTAAGAACATTTCTAACCGATC 57.350 34.615 0.00 0.00 39.61 3.69
5200 5488 7.039882 TCACTAAGAACATTTCTAACCGATCC 58.960 38.462 0.00 0.00 39.61 3.36
5201 5489 6.258068 CACTAAGAACATTTCTAACCGATCCC 59.742 42.308 0.00 0.00 39.61 3.85
5202 5490 5.437191 AAGAACATTTCTAACCGATCCCT 57.563 39.130 0.00 0.00 39.61 4.20
5203 5491 6.555463 AAGAACATTTCTAACCGATCCCTA 57.445 37.500 0.00 0.00 39.61 3.53
5204 5492 6.749036 AGAACATTTCTAACCGATCCCTAT 57.251 37.500 0.00 0.00 38.49 2.57
5205 5493 7.850935 AGAACATTTCTAACCGATCCCTATA 57.149 36.000 0.00 0.00 38.49 1.31
5206 5494 8.258850 AGAACATTTCTAACCGATCCCTATAA 57.741 34.615 0.00 0.00 38.49 0.98
5207 5495 8.148999 AGAACATTTCTAACCGATCCCTATAAC 58.851 37.037 0.00 0.00 38.49 1.89
5208 5496 6.766429 ACATTTCTAACCGATCCCTATAACC 58.234 40.000 0.00 0.00 0.00 2.85
5209 5497 5.458041 TTTCTAACCGATCCCTATAACCG 57.542 43.478 0.00 0.00 0.00 4.44
5210 5498 3.424703 TCTAACCGATCCCTATAACCGG 58.575 50.000 0.00 0.00 45.09 5.28
5214 5502 3.863142 CCGATCCCTATAACCGGTTAG 57.137 52.381 29.49 19.82 35.83 2.34
5215 5503 3.160269 CCGATCCCTATAACCGGTTAGT 58.840 50.000 29.49 19.85 35.83 2.24
5216 5504 3.057033 CCGATCCCTATAACCGGTTAGTG 60.057 52.174 29.49 22.84 35.83 2.74
5217 5505 3.571401 CGATCCCTATAACCGGTTAGTGT 59.429 47.826 29.49 17.15 0.00 3.55
5218 5506 4.761739 CGATCCCTATAACCGGTTAGTGTA 59.238 45.833 29.49 17.35 0.00 2.90
5219 5507 5.106396 CGATCCCTATAACCGGTTAGTGTAG 60.106 48.000 29.49 24.10 0.00 2.74
5220 5508 5.129368 TCCCTATAACCGGTTAGTGTAGT 57.871 43.478 29.49 15.77 0.00 2.73
5221 5509 6.260700 TCCCTATAACCGGTTAGTGTAGTA 57.739 41.667 29.49 16.04 0.00 1.82
5222 5510 6.668645 TCCCTATAACCGGTTAGTGTAGTAA 58.331 40.000 29.49 14.29 0.00 2.24
5223 5511 7.122715 TCCCTATAACCGGTTAGTGTAGTAAA 58.877 38.462 29.49 7.37 0.00 2.01
5224 5512 7.617723 TCCCTATAACCGGTTAGTGTAGTAAAA 59.382 37.037 29.49 6.83 0.00 1.52
5225 5513 8.424133 CCCTATAACCGGTTAGTGTAGTAAAAT 58.576 37.037 29.49 13.52 0.00 1.82
5226 5514 9.822185 CCTATAACCGGTTAGTGTAGTAAAATT 57.178 33.333 29.49 12.39 0.00 1.82
5229 5517 6.710692 ACCGGTTAGTGTAGTAAAATTTCG 57.289 37.500 0.00 0.00 0.00 3.46
5230 5518 6.454795 ACCGGTTAGTGTAGTAAAATTTCGA 58.545 36.000 0.00 0.00 0.00 3.71
5231 5519 7.099120 ACCGGTTAGTGTAGTAAAATTTCGAT 58.901 34.615 0.00 0.00 0.00 3.59
5232 5520 7.603784 ACCGGTTAGTGTAGTAAAATTTCGATT 59.396 33.333 0.00 0.00 0.00 3.34
5233 5521 8.445493 CCGGTTAGTGTAGTAAAATTTCGATTT 58.555 33.333 0.00 0.00 0.00 2.17
5234 5522 9.815936 CGGTTAGTGTAGTAAAATTTCGATTTT 57.184 29.630 2.58 2.58 37.49 1.82
5247 5535 6.657836 ATTTCGATTTTACTCCACTAACCG 57.342 37.500 0.00 0.00 0.00 4.44
5248 5536 4.114058 TCGATTTTACTCCACTAACCGG 57.886 45.455 0.00 0.00 0.00 5.28
5249 5537 2.606272 CGATTTTACTCCACTAACCGGC 59.394 50.000 0.00 0.00 0.00 6.13
5250 5538 3.602483 GATTTTACTCCACTAACCGGCA 58.398 45.455 0.00 0.00 0.00 5.69
5251 5539 2.460757 TTTACTCCACTAACCGGCAC 57.539 50.000 0.00 0.00 0.00 5.01
5252 5540 0.609662 TTACTCCACTAACCGGCACC 59.390 55.000 0.00 0.00 0.00 5.01
5253 5541 0.251922 TACTCCACTAACCGGCACCT 60.252 55.000 0.00 0.00 0.00 4.00
5254 5542 0.251922 ACTCCACTAACCGGCACCTA 60.252 55.000 0.00 0.00 0.00 3.08
5255 5543 0.460311 CTCCACTAACCGGCACCTAG 59.540 60.000 0.00 0.00 0.00 3.02
5256 5544 0.251922 TCCACTAACCGGCACCTAGT 60.252 55.000 0.00 0.28 0.00 2.57
5257 5545 0.175073 CCACTAACCGGCACCTAGTC 59.825 60.000 0.00 0.00 0.00 2.59
5264 5552 3.139565 GGCACCTAGTCGATCCCC 58.860 66.667 0.00 0.00 0.00 4.81
5265 5553 1.457831 GGCACCTAGTCGATCCCCT 60.458 63.158 0.00 0.00 0.00 4.79
5266 5554 0.178970 GGCACCTAGTCGATCCCCTA 60.179 60.000 0.00 0.00 0.00 3.53
5267 5555 1.550409 GGCACCTAGTCGATCCCCTAT 60.550 57.143 0.00 0.00 0.00 2.57
5268 5556 1.819903 GCACCTAGTCGATCCCCTATC 59.180 57.143 0.00 0.00 0.00 2.08
5269 5557 2.448453 CACCTAGTCGATCCCCTATCC 58.552 57.143 0.00 0.00 0.00 2.59
5270 5558 1.004511 ACCTAGTCGATCCCCTATCCG 59.995 57.143 0.00 0.00 0.00 4.18
5271 5559 1.096416 CTAGTCGATCCCCTATCCGC 58.904 60.000 0.00 0.00 0.00 5.54
5272 5560 0.675837 TAGTCGATCCCCTATCCGCG 60.676 60.000 0.00 0.00 0.00 6.46
5273 5561 2.675423 TCGATCCCCTATCCGCGG 60.675 66.667 22.12 22.12 0.00 6.46
5274 5562 2.989824 CGATCCCCTATCCGCGGT 60.990 66.667 27.15 15.22 0.00 5.68
5275 5563 2.571216 CGATCCCCTATCCGCGGTT 61.571 63.158 27.15 20.39 0.00 4.44
5276 5564 1.246056 CGATCCCCTATCCGCGGTTA 61.246 60.000 27.15 20.42 0.00 2.85
5277 5565 0.531200 GATCCCCTATCCGCGGTTAG 59.469 60.000 28.76 28.76 0.00 2.34
5278 5566 0.178941 ATCCCCTATCCGCGGTTAGT 60.179 55.000 31.36 16.97 0.00 2.24
5279 5567 1.111116 TCCCCTATCCGCGGTTAGTG 61.111 60.000 31.36 24.28 0.00 2.74
5291 5579 5.978934 CGCGGTTAGTGGAGTATATTTTT 57.021 39.130 0.00 0.00 0.00 1.94
5293 5581 6.870517 CGCGGTTAGTGGAGTATATTTTTAC 58.129 40.000 0.00 0.00 0.00 2.01
5294 5582 6.698766 CGCGGTTAGTGGAGTATATTTTTACT 59.301 38.462 0.00 0.00 35.13 2.24
5295 5583 7.096312 CGCGGTTAGTGGAGTATATTTTTACTC 60.096 40.741 0.00 3.56 44.84 2.59
5335 5623 9.627123 TTCCCTATATTTTACTTCACTGATTGG 57.373 33.333 0.00 0.00 0.00 3.16
5336 5624 7.719633 TCCCTATATTTTACTTCACTGATTGGC 59.280 37.037 0.00 0.00 0.00 4.52
5337 5625 7.307989 CCCTATATTTTACTTCACTGATTGGCG 60.308 40.741 0.00 0.00 0.00 5.69
5338 5626 4.701956 ATTTTACTTCACTGATTGGCGG 57.298 40.909 0.00 0.00 0.00 6.13
5339 5627 1.448985 TTACTTCACTGATTGGCGGC 58.551 50.000 0.00 0.00 0.00 6.53
5340 5628 0.392461 TACTTCACTGATTGGCGGCC 60.392 55.000 13.32 13.32 0.00 6.13
5341 5629 2.745884 TTCACTGATTGGCGGCCG 60.746 61.111 24.05 24.05 0.00 6.13
5342 5630 3.247056 TTCACTGATTGGCGGCCGA 62.247 57.895 33.48 12.25 0.00 5.54
5343 5631 3.197790 CACTGATTGGCGGCCGAG 61.198 66.667 33.48 19.09 0.00 4.63
5344 5632 3.706373 ACTGATTGGCGGCCGAGT 61.706 61.111 33.48 19.86 0.00 4.18
5345 5633 2.355986 ACTGATTGGCGGCCGAGTA 61.356 57.895 33.48 13.17 0.00 2.59
5346 5634 1.153449 CTGATTGGCGGCCGAGTAA 60.153 57.895 33.48 20.16 0.00 2.24
5347 5635 0.742990 CTGATTGGCGGCCGAGTAAA 60.743 55.000 33.48 16.89 0.00 2.01
5348 5636 0.321741 TGATTGGCGGCCGAGTAAAA 60.322 50.000 33.48 14.94 0.00 1.52
5349 5637 0.098200 GATTGGCGGCCGAGTAAAAC 59.902 55.000 33.48 9.05 0.00 2.43
5350 5638 1.641123 ATTGGCGGCCGAGTAAAACG 61.641 55.000 33.48 0.00 0.00 3.60
5351 5639 2.739671 GGCGGCCGAGTAAAACGT 60.740 61.111 33.48 0.00 0.00 3.99
5352 5640 2.319841 GGCGGCCGAGTAAAACGTT 61.320 57.895 33.48 0.00 0.00 3.99
5353 5641 1.131218 GCGGCCGAGTAAAACGTTC 59.869 57.895 33.48 1.41 0.00 3.95
5354 5642 1.413368 CGGCCGAGTAAAACGTTCG 59.587 57.895 24.07 0.00 0.00 3.95
5355 5643 1.131218 GGCCGAGTAAAACGTTCGC 59.869 57.895 0.00 0.00 33.25 4.70
5356 5644 1.131218 GCCGAGTAAAACGTTCGCC 59.869 57.895 0.00 0.00 33.25 5.54
5357 5645 1.287041 GCCGAGTAAAACGTTCGCCT 61.287 55.000 0.00 0.00 33.25 5.52
5358 5646 0.712222 CCGAGTAAAACGTTCGCCTC 59.288 55.000 0.00 6.14 33.25 4.70
5359 5647 1.668047 CCGAGTAAAACGTTCGCCTCT 60.668 52.381 0.00 0.00 33.25 3.69
5360 5648 2.056577 CGAGTAAAACGTTCGCCTCTT 58.943 47.619 0.00 0.00 0.00 2.85
5361 5649 2.473984 CGAGTAAAACGTTCGCCTCTTT 59.526 45.455 0.00 0.00 0.00 2.52
5362 5650 3.421440 CGAGTAAAACGTTCGCCTCTTTC 60.421 47.826 0.00 0.00 0.00 2.62
5363 5651 3.725490 AGTAAAACGTTCGCCTCTTTCT 58.275 40.909 0.00 0.00 0.00 2.52
5364 5652 3.739810 AGTAAAACGTTCGCCTCTTTCTC 59.260 43.478 0.00 0.00 0.00 2.87
5365 5653 1.137513 AAACGTTCGCCTCTTTCTCG 58.862 50.000 0.00 0.00 0.00 4.04
5366 5654 1.282930 AACGTTCGCCTCTTTCTCGC 61.283 55.000 0.00 0.00 0.00 5.03
5368 5656 1.733399 GTTCGCCTCTTTCTCGCGT 60.733 57.895 5.77 0.00 45.85 6.01
5369 5657 1.443872 TTCGCCTCTTTCTCGCGTC 60.444 57.895 5.77 0.00 45.85 5.19
5370 5658 2.814183 TTCGCCTCTTTCTCGCGTCC 62.814 60.000 5.77 0.00 45.85 4.79
5371 5659 2.881352 GCCTCTTTCTCGCGTCCG 60.881 66.667 5.77 0.00 0.00 4.79
5372 5660 2.881352 CCTCTTTCTCGCGTCCGC 60.881 66.667 5.77 0.68 37.85 5.54
5400 5688 4.481112 CATCTTTGCCGGCGTGCC 62.481 66.667 23.90 0.00 0.00 5.01
5401 5689 4.722700 ATCTTTGCCGGCGTGCCT 62.723 61.111 23.90 2.98 0.00 4.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
185 396 3.394836 GGGAGGGAGCGAGCAACT 61.395 66.667 0.00 0.00 0.00 3.16
186 397 4.821589 CGGGAGGGAGCGAGCAAC 62.822 72.222 0.00 0.00 0.00 4.17
213 424 2.739671 GGGTGTACGTGGCGTTCC 60.740 66.667 0.00 1.33 41.54 3.62
481 697 2.299297 AGTTTGACTGAACCCGGTCTAG 59.701 50.000 0.00 0.00 46.40 2.43
555 771 3.953775 CGGTGGGTGCAGGAAGGT 61.954 66.667 0.00 0.00 0.00 3.50
584 800 0.174162 AGTACACGGTTGATACGGCC 59.826 55.000 0.00 0.00 35.23 6.13
1552 1771 2.287849 TGGATCTATCAAGCTTCGCTCG 60.288 50.000 0.00 0.00 38.25 5.03
1639 1858 8.425703 CAGGAAACCCTGGAAACTAAAAATTAA 58.574 33.333 3.62 0.00 45.86 1.40
1955 2175 9.891828 CTAATGTAGACTGATCAGACAGAATAC 57.108 37.037 29.27 19.03 40.63 1.89
2002 2222 1.334869 GCAGTTTCCACACTTGTCCAG 59.665 52.381 0.00 0.00 0.00 3.86
2052 2272 1.229428 TTCAGGACGCAAGCTTTGAG 58.771 50.000 0.00 0.00 45.62 3.02
2081 2301 4.023726 AGGCAACCGTTTGTTTATCCTA 57.976 40.909 0.00 0.00 34.00 2.94
2096 2316 2.548480 AGAAGTTGTAAGCGAAGGCAAC 59.452 45.455 0.00 0.00 43.41 4.17
2386 2640 4.406972 TCTTCACCGAATGGAAGATGAGAT 59.593 41.667 0.00 0.00 43.26 2.75
2477 2737 4.631131 TGTCATCCACTACACTTGAACAG 58.369 43.478 0.00 0.00 0.00 3.16
2572 2832 4.343526 TCCTCAGGAAGCAGAAGTGATATC 59.656 45.833 0.00 0.00 0.00 1.63
2611 2871 4.747810 AGACAAGCAAGAAAACAAGTTGG 58.252 39.130 7.96 0.00 0.00 3.77
2922 3186 0.034960 GTTCTTCTCTTCCAGCCCCC 60.035 60.000 0.00 0.00 0.00 5.40
2962 3226 4.762251 AGCTTGAGACACTTATTTTGGGAC 59.238 41.667 0.00 0.00 0.00 4.46
3006 3270 9.530633 ACTGTCTCAACTTTGTACTAACTTTAG 57.469 33.333 0.00 0.00 36.82 1.85
3007 3271 9.880157 AACTGTCTCAACTTTGTACTAACTTTA 57.120 29.630 0.00 0.00 0.00 1.85
3008 3272 8.788325 AACTGTCTCAACTTTGTACTAACTTT 57.212 30.769 0.00 0.00 0.00 2.66
3014 3278 8.621286 CCAAAATAACTGTCTCAACTTTGTACT 58.379 33.333 0.00 0.00 0.00 2.73
3015 3279 7.860872 CCCAAAATAACTGTCTCAACTTTGTAC 59.139 37.037 0.00 0.00 0.00 2.90
3017 3281 6.605594 TCCCAAAATAACTGTCTCAACTTTGT 59.394 34.615 0.00 0.00 0.00 2.83
3018 3282 6.918022 GTCCCAAAATAACTGTCTCAACTTTG 59.082 38.462 0.00 0.00 0.00 2.77
3019 3283 6.833933 AGTCCCAAAATAACTGTCTCAACTTT 59.166 34.615 0.00 0.00 0.00 2.66
3021 3285 5.765182 CAGTCCCAAAATAACTGTCTCAACT 59.235 40.000 0.00 0.00 36.50 3.16
3022 3286 5.763204 TCAGTCCCAAAATAACTGTCTCAAC 59.237 40.000 0.00 0.00 40.94 3.18
3024 3288 5.513094 CCTCAGTCCCAAAATAACTGTCTCA 60.513 44.000 0.00 0.00 40.94 3.27
3025 3289 4.938226 CCTCAGTCCCAAAATAACTGTCTC 59.062 45.833 0.00 0.00 40.94 3.36
3026 3290 4.263506 CCCTCAGTCCCAAAATAACTGTCT 60.264 45.833 0.00 0.00 40.94 3.41
3027 3291 4.010349 CCCTCAGTCCCAAAATAACTGTC 58.990 47.826 0.00 0.00 40.94 3.51
3029 3293 4.263506 ACTCCCTCAGTCCCAAAATAACTG 60.264 45.833 0.00 0.00 41.38 3.16
3031 3295 4.302559 ACTCCCTCAGTCCCAAAATAAC 57.697 45.455 0.00 0.00 0.00 1.89
3032 3296 6.457159 TTTACTCCCTCAGTCCCAAAATAA 57.543 37.500 0.00 0.00 36.43 1.40
3033 3297 6.652205 ATTTACTCCCTCAGTCCCAAAATA 57.348 37.500 0.00 0.00 36.43 1.40
3034 3298 5.536497 ATTTACTCCCTCAGTCCCAAAAT 57.464 39.130 0.00 0.00 36.43 1.82
3035 3299 5.333566 AATTTACTCCCTCAGTCCCAAAA 57.666 39.130 0.00 0.00 36.43 2.44
3036 3300 5.311121 TGTAATTTACTCCCTCAGTCCCAAA 59.689 40.000 7.99 0.00 36.43 3.28
3038 3302 4.431378 TGTAATTTACTCCCTCAGTCCCA 58.569 43.478 7.99 0.00 36.43 4.37
3039 3303 5.130477 TCATGTAATTTACTCCCTCAGTCCC 59.870 44.000 7.99 0.00 36.43 4.46
3040 3304 6.235231 TCATGTAATTTACTCCCTCAGTCC 57.765 41.667 7.99 0.00 36.43 3.85
3041 3305 6.284459 CCTCATGTAATTTACTCCCTCAGTC 58.716 44.000 7.99 0.00 36.43 3.51
3042 3306 5.131142 CCCTCATGTAATTTACTCCCTCAGT 59.869 44.000 7.99 0.00 39.41 3.41
3043 3307 5.366768 TCCCTCATGTAATTTACTCCCTCAG 59.633 44.000 7.99 0.00 0.00 3.35
3044 3308 5.285401 TCCCTCATGTAATTTACTCCCTCA 58.715 41.667 7.99 0.00 0.00 3.86
3045 3309 5.367060 ACTCCCTCATGTAATTTACTCCCTC 59.633 44.000 7.99 0.00 0.00 4.30
3046 3310 5.289510 ACTCCCTCATGTAATTTACTCCCT 58.710 41.667 7.99 0.00 0.00 4.20
3047 3311 5.632034 ACTCCCTCATGTAATTTACTCCC 57.368 43.478 7.99 0.00 0.00 4.30
3048 3312 7.120923 TGTACTCCCTCATGTAATTTACTCC 57.879 40.000 7.99 0.00 0.00 3.85
3049 3313 7.783042 ACTGTACTCCCTCATGTAATTTACTC 58.217 38.462 7.99 0.00 0.00 2.59
3051 3315 8.472413 TGTACTGTACTCCCTCATGTAATTTAC 58.528 37.037 17.98 0.00 0.00 2.01
3052 3316 8.598202 TGTACTGTACTCCCTCATGTAATTTA 57.402 34.615 17.98 0.00 0.00 1.40
3053 3317 7.490657 TGTACTGTACTCCCTCATGTAATTT 57.509 36.000 17.98 0.00 0.00 1.82
3054 3318 7.180408 AGTTGTACTGTACTCCCTCATGTAATT 59.820 37.037 17.98 0.00 0.00 1.40
3055 3319 6.668283 AGTTGTACTGTACTCCCTCATGTAAT 59.332 38.462 17.98 0.00 0.00 1.89
3056 3320 6.014647 AGTTGTACTGTACTCCCTCATGTAA 58.985 40.000 17.98 0.00 0.00 2.41
3057 3321 5.577100 AGTTGTACTGTACTCCCTCATGTA 58.423 41.667 17.98 0.00 0.00 2.29
3058 3322 4.417437 AGTTGTACTGTACTCCCTCATGT 58.583 43.478 17.98 0.00 0.00 3.21
3059 3323 5.407407 AAGTTGTACTGTACTCCCTCATG 57.593 43.478 17.98 0.00 0.00 3.07
3061 3325 4.652421 ACAAAGTTGTACTGTACTCCCTCA 59.348 41.667 17.98 0.00 40.16 3.86
3090 3354 9.530633 CTGTCTCAACTTTGTACTAACTTTAGT 57.469 33.333 6.85 6.85 45.39 2.24
3091 3355 9.530633 ACTGTCTCAACTTTGTACTAACTTTAG 57.469 33.333 0.00 0.00 36.82 1.85
3092 3356 9.880157 AACTGTCTCAACTTTGTACTAACTTTA 57.120 29.630 0.00 0.00 0.00 1.85
3093 3357 8.788325 AACTGTCTCAACTTTGTACTAACTTT 57.212 30.769 0.00 0.00 0.00 2.66
3099 3363 8.621286 CCAAAATAACTGTCTCAACTTTGTACT 58.379 33.333 0.00 0.00 0.00 2.73
3100 3364 7.860872 CCCAAAATAACTGTCTCAACTTTGTAC 59.139 37.037 0.00 0.00 0.00 2.90
3101 3365 7.776030 TCCCAAAATAACTGTCTCAACTTTGTA 59.224 33.333 0.00 0.00 0.00 2.41
3102 3366 6.605594 TCCCAAAATAACTGTCTCAACTTTGT 59.394 34.615 0.00 0.00 0.00 2.83
3103 3367 6.918022 GTCCCAAAATAACTGTCTCAACTTTG 59.082 38.462 0.00 0.00 0.00 2.77
3104 3368 6.833933 AGTCCCAAAATAACTGTCTCAACTTT 59.166 34.615 0.00 0.00 0.00 2.66
3105 3369 6.263168 CAGTCCCAAAATAACTGTCTCAACTT 59.737 38.462 0.00 0.00 36.50 2.66
3106 3370 5.765182 CAGTCCCAAAATAACTGTCTCAACT 59.235 40.000 0.00 0.00 36.50 3.16
3107 3371 5.763204 TCAGTCCCAAAATAACTGTCTCAAC 59.237 40.000 0.00 0.00 40.94 3.18
3108 3372 5.935945 TCAGTCCCAAAATAACTGTCTCAA 58.064 37.500 0.00 0.00 40.94 3.02
3109 3373 5.513094 CCTCAGTCCCAAAATAACTGTCTCA 60.513 44.000 0.00 0.00 40.94 3.27
3110 3374 4.938226 CCTCAGTCCCAAAATAACTGTCTC 59.062 45.833 0.00 0.00 40.94 3.36
3111 3375 4.263506 CCCTCAGTCCCAAAATAACTGTCT 60.264 45.833 0.00 0.00 40.94 3.41
3112 3376 4.010349 CCCTCAGTCCCAAAATAACTGTC 58.990 47.826 0.00 0.00 40.94 3.51
3113 3377 3.655777 TCCCTCAGTCCCAAAATAACTGT 59.344 43.478 0.00 0.00 40.94 3.55
3114 3378 4.263506 ACTCCCTCAGTCCCAAAATAACTG 60.264 45.833 0.00 0.00 41.38 3.16
3115 3379 3.916989 ACTCCCTCAGTCCCAAAATAACT 59.083 43.478 0.00 0.00 0.00 2.24
3116 3380 4.302559 ACTCCCTCAGTCCCAAAATAAC 57.697 45.455 0.00 0.00 0.00 1.89
3117 3381 6.457159 TTTACTCCCTCAGTCCCAAAATAA 57.543 37.500 0.00 0.00 36.43 1.40
3118 3382 6.652205 ATTTACTCCCTCAGTCCCAAAATA 57.348 37.500 0.00 0.00 36.43 1.40
3129 3393 5.692115 TGCTCATGTAATTTACTCCCTCA 57.308 39.130 7.99 0.00 0.00 3.86
3238 3502 9.445878 CTCCAGAGCATTCATTTATATGTATGT 57.554 33.333 12.13 2.85 40.02 2.29
3288 3552 3.400590 GACAACACGGACGCGTCC 61.401 66.667 41.75 41.75 46.18 4.79
3299 3563 2.661537 CTGCTGTCGCGGACAACA 60.662 61.111 6.13 10.14 45.62 3.33
3309 3573 3.196685 ACATTAGTTCCTCTCCTGCTGTC 59.803 47.826 0.00 0.00 0.00 3.51
3310 3574 3.055530 CACATTAGTTCCTCTCCTGCTGT 60.056 47.826 0.00 0.00 0.00 4.40
3311 3575 3.055530 ACACATTAGTTCCTCTCCTGCTG 60.056 47.826 0.00 0.00 0.00 4.41
3312 3576 3.177228 ACACATTAGTTCCTCTCCTGCT 58.823 45.455 0.00 0.00 0.00 4.24
3373 3647 2.159156 GGACAGTGTCCGCATACATACA 60.159 50.000 26.12 0.00 43.14 2.29
3375 3649 2.882927 GGACAGTGTCCGCATACATA 57.117 50.000 26.12 0.00 43.14 2.29
3410 3685 3.126001 TCAACTACAGGACCAGCTTTG 57.874 47.619 0.00 0.00 0.00 2.77
3650 3925 2.857186 TAAGATGTTCAGCACTGGCA 57.143 45.000 0.00 0.00 44.61 4.92
3692 3968 9.065871 CAGGTCTTAATAAATCTTTTTCGCTTG 57.934 33.333 0.00 0.00 0.00 4.01
3749 4025 9.424319 CAAGAATACAAAGTTCACTAGCTCTAA 57.576 33.333 0.00 0.00 0.00 2.10
3854 4130 9.341899 GAACAAAATATTGGTTATCACAGTCAC 57.658 33.333 5.91 0.00 36.33 3.67
3880 4156 5.336150 ACACAGAGACTGTAAGATGATGG 57.664 43.478 4.08 0.00 43.43 3.51
3915 4191 3.810623 AGGTATCCCTCTGGGTTACAAA 58.189 45.455 19.55 0.00 45.19 2.83
3916 4192 3.502051 AGGTATCCCTCTGGGTTACAA 57.498 47.619 19.55 0.00 45.19 2.41
3935 4211 4.124238 TGTTCTCAACAGTTAAACCGGAG 58.876 43.478 9.46 0.00 36.25 4.63
3998 4274 5.012328 AGGACATACCATCTCGAAGTTTC 57.988 43.478 0.00 0.00 42.04 2.78
4166 4442 4.018597 ACTTCTTCTCTGAGGGCATCATTT 60.019 41.667 0.84 0.00 37.28 2.32
4178 4454 0.739112 GCCGCTGGACTTCTTCTCTG 60.739 60.000 0.00 0.00 0.00 3.35
4330 4606 1.905843 TTTTGGGGGTGGTGATGCG 60.906 57.895 0.00 0.00 0.00 4.73
4648 4926 1.056660 ACAGGGTGACAACTACAGGG 58.943 55.000 0.00 0.00 0.00 4.45
4705 4983 4.982295 CGGAAACCAGAAAAATTCAAGACC 59.018 41.667 0.00 0.00 0.00 3.85
4737 5015 0.687354 ACCTGCTTACCAGACACCAG 59.313 55.000 0.00 0.00 44.64 4.00
4869 5147 9.474920 CAATTTAGACAAAGCCAGTTGAATTTA 57.525 29.630 0.00 0.00 32.59 1.40
4899 5186 3.603532 TCAAGCAGATGTGACAGGAATC 58.396 45.455 0.00 0.00 0.00 2.52
4906 5193 3.844577 AGCATTTCAAGCAGATGTGAC 57.155 42.857 0.00 0.00 0.00 3.67
5029 5317 2.772287 GAGAGAAAAGTGGACACTGGG 58.228 52.381 5.63 0.00 41.58 4.45
5078 5366 5.010719 ACAGAAACGATAAGTTGTCTCCAGA 59.989 40.000 0.00 0.00 43.37 3.86
5088 5376 6.878923 TGGATGATTCAACAGAAACGATAAGT 59.121 34.615 0.00 0.00 0.00 2.24
5092 5380 6.151648 ACAATGGATGATTCAACAGAAACGAT 59.848 34.615 0.00 0.00 0.00 3.73
5111 5399 3.449737 TCTTTACCGAGGGAGTACAATGG 59.550 47.826 0.00 0.00 0.00 3.16
5170 5458 9.582431 CGGTTAGAAATGTTCTTAGTGATCTAA 57.418 33.333 0.00 0.00 41.14 2.10
5171 5459 8.963725 TCGGTTAGAAATGTTCTTAGTGATCTA 58.036 33.333 0.00 0.00 41.14 1.98
5172 5460 7.837863 TCGGTTAGAAATGTTCTTAGTGATCT 58.162 34.615 0.00 0.00 41.14 2.75
5173 5461 8.649973 ATCGGTTAGAAATGTTCTTAGTGATC 57.350 34.615 0.00 0.00 41.14 2.92
5174 5462 7.711339 GGATCGGTTAGAAATGTTCTTAGTGAT 59.289 37.037 0.00 0.00 41.14 3.06
5175 5463 7.039882 GGATCGGTTAGAAATGTTCTTAGTGA 58.960 38.462 0.00 0.00 41.14 3.41
5176 5464 6.258068 GGGATCGGTTAGAAATGTTCTTAGTG 59.742 42.308 0.00 0.00 41.14 2.74
5177 5465 6.156429 AGGGATCGGTTAGAAATGTTCTTAGT 59.844 38.462 0.00 0.00 41.14 2.24
5178 5466 6.583562 AGGGATCGGTTAGAAATGTTCTTAG 58.416 40.000 0.00 0.00 41.14 2.18
5179 5467 6.555463 AGGGATCGGTTAGAAATGTTCTTA 57.445 37.500 0.00 0.00 41.14 2.10
5180 5468 5.437191 AGGGATCGGTTAGAAATGTTCTT 57.563 39.130 0.00 0.00 41.14 2.52
5181 5469 6.749036 ATAGGGATCGGTTAGAAATGTTCT 57.251 37.500 0.00 0.00 43.72 3.01
5182 5470 7.387122 GGTTATAGGGATCGGTTAGAAATGTTC 59.613 40.741 0.00 0.00 0.00 3.18
5183 5471 7.222161 GGTTATAGGGATCGGTTAGAAATGTT 58.778 38.462 0.00 0.00 0.00 2.71
5184 5472 6.517864 CGGTTATAGGGATCGGTTAGAAATGT 60.518 42.308 0.00 0.00 0.00 2.71
5185 5473 5.867716 CGGTTATAGGGATCGGTTAGAAATG 59.132 44.000 0.00 0.00 0.00 2.32
5186 5474 5.046807 CCGGTTATAGGGATCGGTTAGAAAT 60.047 44.000 0.00 0.00 36.38 2.17
5187 5475 4.281688 CCGGTTATAGGGATCGGTTAGAAA 59.718 45.833 0.00 0.00 36.38 2.52
5188 5476 3.828451 CCGGTTATAGGGATCGGTTAGAA 59.172 47.826 0.00 0.00 36.38 2.10
5189 5477 3.424703 CCGGTTATAGGGATCGGTTAGA 58.575 50.000 0.00 0.00 36.38 2.10
5190 5478 3.863142 CCGGTTATAGGGATCGGTTAG 57.137 52.381 0.00 0.00 36.38 2.34
5194 5482 3.057033 CACTAACCGGTTATAGGGATCGG 60.057 52.174 26.70 14.12 45.42 4.18
5195 5483 3.571401 ACACTAACCGGTTATAGGGATCG 59.429 47.826 26.70 14.80 0.00 3.69
5196 5484 5.772169 ACTACACTAACCGGTTATAGGGATC 59.228 44.000 26.70 0.00 0.00 3.36
5197 5485 5.709594 ACTACACTAACCGGTTATAGGGAT 58.290 41.667 26.70 12.28 0.00 3.85
5198 5486 5.129368 ACTACACTAACCGGTTATAGGGA 57.871 43.478 26.70 14.67 0.00 4.20
5199 5487 6.959639 TTACTACACTAACCGGTTATAGGG 57.040 41.667 26.70 21.25 0.00 3.53
5200 5488 9.822185 AATTTTACTACACTAACCGGTTATAGG 57.178 33.333 26.70 19.79 0.00 2.57
5203 5491 8.872845 CGAAATTTTACTACACTAACCGGTTAT 58.127 33.333 26.70 15.12 0.00 1.89
5204 5492 8.085296 TCGAAATTTTACTACACTAACCGGTTA 58.915 33.333 25.09 25.09 0.00 2.85
5205 5493 6.928492 TCGAAATTTTACTACACTAACCGGTT 59.072 34.615 25.64 25.64 0.00 4.44
5206 5494 6.454795 TCGAAATTTTACTACACTAACCGGT 58.545 36.000 0.00 0.00 0.00 5.28
5207 5495 6.949578 TCGAAATTTTACTACACTAACCGG 57.050 37.500 0.00 0.00 0.00 5.28
5208 5496 9.815936 AAAATCGAAATTTTACTACACTAACCG 57.184 29.630 0.00 0.00 42.04 4.44
5221 5509 8.019094 CGGTTAGTGGAGTAAAATCGAAATTTT 58.981 33.333 5.08 3.82 45.02 1.82
5222 5510 7.361457 CCGGTTAGTGGAGTAAAATCGAAATTT 60.361 37.037 0.00 0.00 36.64 1.82
5223 5511 6.093082 CCGGTTAGTGGAGTAAAATCGAAATT 59.907 38.462 0.00 0.00 0.00 1.82
5224 5512 5.583457 CCGGTTAGTGGAGTAAAATCGAAAT 59.417 40.000 0.00 0.00 0.00 2.17
5225 5513 4.931002 CCGGTTAGTGGAGTAAAATCGAAA 59.069 41.667 0.00 0.00 0.00 3.46
5226 5514 4.497300 CCGGTTAGTGGAGTAAAATCGAA 58.503 43.478 0.00 0.00 0.00 3.71
5227 5515 3.676873 GCCGGTTAGTGGAGTAAAATCGA 60.677 47.826 1.90 0.00 0.00 3.59
5228 5516 2.606272 GCCGGTTAGTGGAGTAAAATCG 59.394 50.000 1.90 0.00 0.00 3.34
5229 5517 3.373130 GTGCCGGTTAGTGGAGTAAAATC 59.627 47.826 1.90 0.00 0.00 2.17
5230 5518 3.340928 GTGCCGGTTAGTGGAGTAAAAT 58.659 45.455 1.90 0.00 0.00 1.82
5231 5519 2.550639 GGTGCCGGTTAGTGGAGTAAAA 60.551 50.000 1.90 0.00 0.00 1.52
5232 5520 1.002315 GGTGCCGGTTAGTGGAGTAAA 59.998 52.381 1.90 0.00 0.00 2.01
5233 5521 0.609662 GGTGCCGGTTAGTGGAGTAA 59.390 55.000 1.90 0.00 0.00 2.24
5234 5522 0.251922 AGGTGCCGGTTAGTGGAGTA 60.252 55.000 1.90 0.00 0.00 2.59
5235 5523 0.251922 TAGGTGCCGGTTAGTGGAGT 60.252 55.000 1.90 0.00 0.00 3.85
5236 5524 0.460311 CTAGGTGCCGGTTAGTGGAG 59.540 60.000 1.90 0.00 0.00 3.86
5237 5525 0.251922 ACTAGGTGCCGGTTAGTGGA 60.252 55.000 1.90 0.00 0.00 4.02
5238 5526 0.175073 GACTAGGTGCCGGTTAGTGG 59.825 60.000 1.90 0.00 0.00 4.00
5239 5527 0.179145 CGACTAGGTGCCGGTTAGTG 60.179 60.000 1.90 0.00 0.00 2.74
5240 5528 0.322816 TCGACTAGGTGCCGGTTAGT 60.323 55.000 1.90 6.55 0.00 2.24
5241 5529 1.001597 GATCGACTAGGTGCCGGTTAG 60.002 57.143 1.90 3.16 0.00 2.34
5242 5530 1.027357 GATCGACTAGGTGCCGGTTA 58.973 55.000 1.90 0.00 0.00 2.85
5243 5531 1.673808 GGATCGACTAGGTGCCGGTT 61.674 60.000 1.90 0.00 0.00 4.44
5244 5532 2.125961 GGATCGACTAGGTGCCGGT 61.126 63.158 1.90 0.00 0.00 5.28
5245 5533 2.728817 GGATCGACTAGGTGCCGG 59.271 66.667 0.00 0.00 0.00 6.13
5246 5534 2.728817 GGGATCGACTAGGTGCCG 59.271 66.667 0.00 0.00 29.58 5.69
5247 5535 0.178970 TAGGGGATCGACTAGGTGCC 60.179 60.000 0.00 0.00 41.31 5.01
5248 5536 1.819903 GATAGGGGATCGACTAGGTGC 59.180 57.143 0.00 0.00 0.00 5.01
5249 5537 2.448453 GGATAGGGGATCGACTAGGTG 58.552 57.143 0.00 0.00 35.12 4.00
5250 5538 1.004511 CGGATAGGGGATCGACTAGGT 59.995 57.143 0.00 0.00 35.12 3.08
5251 5539 1.752683 CGGATAGGGGATCGACTAGG 58.247 60.000 0.00 0.00 35.12 3.02
5252 5540 1.096416 GCGGATAGGGGATCGACTAG 58.904 60.000 0.00 0.00 35.12 2.57
5253 5541 0.675837 CGCGGATAGGGGATCGACTA 60.676 60.000 0.00 0.00 35.12 2.59
5254 5542 1.972223 CGCGGATAGGGGATCGACT 60.972 63.158 0.00 0.00 35.12 4.18
5255 5543 2.567049 CGCGGATAGGGGATCGAC 59.433 66.667 0.00 0.00 35.12 4.20
5262 5550 1.111116 TCCACTAACCGCGGATAGGG 61.111 60.000 36.21 34.04 0.00 3.53
5263 5551 0.314302 CTCCACTAACCGCGGATAGG 59.686 60.000 36.21 26.61 0.00 2.57
5264 5552 1.030457 ACTCCACTAACCGCGGATAG 58.970 55.000 33.34 33.34 0.00 2.08
5265 5553 2.346766 TACTCCACTAACCGCGGATA 57.653 50.000 35.90 24.65 0.00 2.59
5266 5554 1.700955 ATACTCCACTAACCGCGGAT 58.299 50.000 35.90 24.93 0.00 4.18
5267 5555 2.346766 TATACTCCACTAACCGCGGA 57.653 50.000 35.90 9.83 0.00 5.54
5268 5556 3.655276 AATATACTCCACTAACCGCGG 57.345 47.619 26.86 26.86 0.00 6.46
5269 5557 5.978934 AAAAATATACTCCACTAACCGCG 57.021 39.130 0.00 0.00 0.00 6.46
5270 5558 8.070007 GAGTAAAAATATACTCCACTAACCGC 57.930 38.462 3.62 0.00 43.88 5.68
5309 5597 9.627123 CCAATCAGTGAAGTAAAATATAGGGAA 57.373 33.333 0.00 0.00 0.00 3.97
5310 5598 7.719633 GCCAATCAGTGAAGTAAAATATAGGGA 59.280 37.037 0.00 0.00 0.00 4.20
5311 5599 7.307989 CGCCAATCAGTGAAGTAAAATATAGGG 60.308 40.741 0.00 0.00 0.00 3.53
5312 5600 7.307989 CCGCCAATCAGTGAAGTAAAATATAGG 60.308 40.741 0.00 0.00 0.00 2.57
5313 5601 7.576236 CCGCCAATCAGTGAAGTAAAATATAG 58.424 38.462 0.00 0.00 0.00 1.31
5314 5602 6.017440 GCCGCCAATCAGTGAAGTAAAATATA 60.017 38.462 0.00 0.00 0.00 0.86
5315 5603 5.221048 GCCGCCAATCAGTGAAGTAAAATAT 60.221 40.000 0.00 0.00 0.00 1.28
5316 5604 4.095782 GCCGCCAATCAGTGAAGTAAAATA 59.904 41.667 0.00 0.00 0.00 1.40
5317 5605 3.119495 GCCGCCAATCAGTGAAGTAAAAT 60.119 43.478 0.00 0.00 0.00 1.82
5318 5606 2.227865 GCCGCCAATCAGTGAAGTAAAA 59.772 45.455 0.00 0.00 0.00 1.52
5319 5607 1.810151 GCCGCCAATCAGTGAAGTAAA 59.190 47.619 0.00 0.00 0.00 2.01
5320 5608 1.448985 GCCGCCAATCAGTGAAGTAA 58.551 50.000 0.00 0.00 0.00 2.24
5321 5609 0.392461 GGCCGCCAATCAGTGAAGTA 60.392 55.000 3.91 0.00 0.00 2.24
5322 5610 1.675641 GGCCGCCAATCAGTGAAGT 60.676 57.895 3.91 0.00 0.00 3.01
5323 5611 2.753966 CGGCCGCCAATCAGTGAAG 61.754 63.158 14.67 0.00 0.00 3.02
5324 5612 2.745884 CGGCCGCCAATCAGTGAA 60.746 61.111 14.67 0.00 0.00 3.18
5325 5613 3.664025 CTCGGCCGCCAATCAGTGA 62.664 63.158 23.51 0.00 0.00 3.41
5326 5614 2.572095 TACTCGGCCGCCAATCAGTG 62.572 60.000 23.51 3.98 0.00 3.66
5327 5615 1.895020 TTACTCGGCCGCCAATCAGT 61.895 55.000 23.51 19.98 0.00 3.41
5328 5616 0.742990 TTTACTCGGCCGCCAATCAG 60.743 55.000 23.51 14.50 0.00 2.90
5329 5617 0.321741 TTTTACTCGGCCGCCAATCA 60.322 50.000 23.51 0.00 0.00 2.57
5330 5618 0.098200 GTTTTACTCGGCCGCCAATC 59.902 55.000 23.51 5.58 0.00 2.67
5331 5619 1.641123 CGTTTTACTCGGCCGCCAAT 61.641 55.000 23.51 7.96 0.00 3.16
5332 5620 2.319096 CGTTTTACTCGGCCGCCAA 61.319 57.895 23.51 11.21 0.00 4.52
5333 5621 2.739287 CGTTTTACTCGGCCGCCA 60.739 61.111 23.51 2.44 0.00 5.69
5334 5622 2.231745 GAACGTTTTACTCGGCCGCC 62.232 60.000 23.51 0.00 0.00 6.13
5335 5623 1.131218 GAACGTTTTACTCGGCCGC 59.869 57.895 23.51 2.90 0.00 6.53
5336 5624 1.413368 CGAACGTTTTACTCGGCCG 59.587 57.895 22.12 22.12 0.00 6.13
5337 5625 1.131218 GCGAACGTTTTACTCGGCC 59.869 57.895 0.46 0.00 33.23 6.13
5338 5626 4.712063 GCGAACGTTTTACTCGGC 57.288 55.556 0.46 0.00 33.23 5.54
5339 5627 0.712222 GAGGCGAACGTTTTACTCGG 59.288 55.000 0.46 0.00 33.23 4.63
5340 5628 1.694639 AGAGGCGAACGTTTTACTCG 58.305 50.000 0.46 1.55 35.70 4.18
5341 5629 3.739810 AGAAAGAGGCGAACGTTTTACTC 59.260 43.478 0.46 10.30 0.00 2.59
5342 5630 3.725490 AGAAAGAGGCGAACGTTTTACT 58.275 40.909 0.46 0.25 0.00 2.24
5343 5631 3.421440 CGAGAAAGAGGCGAACGTTTTAC 60.421 47.826 0.46 0.00 0.00 2.01
5344 5632 2.727798 CGAGAAAGAGGCGAACGTTTTA 59.272 45.455 0.46 0.00 0.00 1.52
5345 5633 1.525619 CGAGAAAGAGGCGAACGTTTT 59.474 47.619 0.46 0.00 0.00 2.43
5346 5634 1.137513 CGAGAAAGAGGCGAACGTTT 58.862 50.000 0.46 0.00 0.00 3.60
5347 5635 1.282930 GCGAGAAAGAGGCGAACGTT 61.283 55.000 0.00 0.00 0.00 3.99
5348 5636 1.733399 GCGAGAAAGAGGCGAACGT 60.733 57.895 0.00 0.00 0.00 3.99
5349 5637 3.073446 GCGAGAAAGAGGCGAACG 58.927 61.111 0.00 0.00 0.00 3.95
5354 5642 2.881352 CGGACGCGAGAAAGAGGC 60.881 66.667 15.93 0.00 0.00 4.70
5355 5643 2.881352 GCGGACGCGAGAAAGAGG 60.881 66.667 15.93 0.00 0.00 3.69
5383 5671 4.481112 GGCACGCCGGCAAAGATG 62.481 66.667 28.98 16.46 40.76 2.90
5384 5672 4.722700 AGGCACGCCGGCAAAGAT 62.723 61.111 28.98 5.86 44.47 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.