Multiple sequence alignment - TraesCS4D01G110600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G110600 chr4D 100.000 2666 0 0 1 2666 91061584 91058919 0.000000e+00 4924.0
1 TraesCS4D01G110600 chr4D 97.724 791 15 3 1 788 410654498 410655288 0.000000e+00 1358.0
2 TraesCS4D01G110600 chr4D 93.750 48 0 2 1939 1984 412678116 412678162 4.760000e-08 69.4
3 TraesCS4D01G110600 chr4B 95.113 1146 47 8 801 1943 127688138 127686999 0.000000e+00 1797.0
4 TraesCS4D01G110600 chr4B 94.118 374 12 7 2296 2660 127687001 127686629 6.440000e-156 560.0
5 TraesCS4D01G110600 chr4B 92.737 358 25 1 1942 2298 18600584 18600227 1.410000e-142 516.0
6 TraesCS4D01G110600 chr4B 90.110 364 31 5 1938 2299 526952945 526952585 4.020000e-128 468.0
7 TraesCS4D01G110600 chr4A 94.108 1171 44 10 787 1943 503236780 503235621 0.000000e+00 1757.0
8 TraesCS4D01G110600 chr4A 89.097 321 23 9 2358 2666 503235488 503235168 3.220000e-104 388.0
9 TraesCS4D01G110600 chr5D 98.354 790 10 3 1 788 277073648 277072860 0.000000e+00 1384.0
10 TraesCS4D01G110600 chr5D 97.977 791 12 3 1 789 212632439 212633227 0.000000e+00 1369.0
11 TraesCS4D01G110600 chr5D 97.592 789 16 3 1 787 421450702 421451489 0.000000e+00 1349.0
12 TraesCS4D01G110600 chr5D 97.475 792 16 4 1 790 543053995 543054784 0.000000e+00 1349.0
13 TraesCS4D01G110600 chr5D 92.697 356 24 2 1941 2295 324787098 324787452 1.830000e-141 512.0
14 TraesCS4D01G110600 chr5D 85.535 159 15 3 1944 2094 276153471 276153629 2.750000e-35 159.0
15 TraesCS4D01G110600 chr5D 91.837 49 2 2 1937 1984 412470814 412470767 1.710000e-07 67.6
16 TraesCS4D01G110600 chr6D 98.099 789 10 4 1 787 127945047 127944262 0.000000e+00 1369.0
17 TraesCS4D01G110600 chr6D 91.460 363 29 2 1938 2298 23787117 23787479 5.130000e-137 497.0
18 TraesCS4D01G110600 chr6D 88.418 354 40 1 1946 2298 473065745 473066098 2.450000e-115 425.0
19 TraesCS4D01G110600 chr1D 97.724 791 15 3 1 788 12190959 12190169 0.000000e+00 1358.0
20 TraesCS4D01G110600 chr1D 87.179 156 17 1 1942 2094 250753051 250752896 9.810000e-40 174.0
21 TraesCS4D01G110600 chr1D 100.000 33 0 0 1941 1973 462107290 462107258 7.970000e-06 62.1
22 TraesCS4D01G110600 chr1D 100.000 32 0 0 1942 1973 33402976 33402945 2.870000e-05 60.2
23 TraesCS4D01G110600 chr7D 97.487 796 15 5 1 793 546261433 546260640 0.000000e+00 1354.0
24 TraesCS4D01G110600 chr7D 90.385 364 34 1 1940 2302 19421869 19421506 6.680000e-131 477.0
25 TraesCS4D01G110600 chrUn 97.595 790 17 2 1 788 95194629 95195418 0.000000e+00 1352.0
26 TraesCS4D01G110600 chrUn 92.347 196 14 1 2104 2298 230605218 230605413 7.270000e-71 278.0
27 TraesCS4D01G110600 chrUn 93.750 144 8 1 1939 2081 230605082 230605225 5.780000e-52 215.0
28 TraesCS4D01G110600 chrUn 100.000 35 0 0 1939 1973 93156260 93156294 6.160000e-07 65.8
29 TraesCS4D01G110600 chr2B 93.478 368 21 3 1934 2298 203097618 203097985 6.490000e-151 544.0
30 TraesCS4D01G110600 chr5B 93.017 358 24 1 1942 2298 545613942 545614299 3.040000e-144 521.0
31 TraesCS4D01G110600 chr7A 92.077 366 26 3 1939 2301 36907354 36906989 1.830000e-141 512.0
32 TraesCS4D01G110600 chr2A 92.265 362 22 5 1941 2298 286450326 286450685 2.370000e-140 508.0
33 TraesCS4D01G110600 chr3D 91.877 357 27 2 1943 2298 137157780 137158135 5.130000e-137 497.0
34 TraesCS4D01G110600 chr5A 90.582 361 33 1 1939 2298 398983152 398983512 6.680000e-131 477.0
35 TraesCS4D01G110600 chr7B 93.060 317 22 0 1942 2258 53170147 53169831 5.200000e-127 464.0
36 TraesCS4D01G110600 chr7B 88.859 368 36 3 1935 2298 32744902 32745268 5.240000e-122 448.0
37 TraesCS4D01G110600 chr6A 90.028 351 33 2 1939 2288 543393898 543394247 1.130000e-123 453.0
38 TraesCS4D01G110600 chr6A 82.799 343 55 4 1959 2299 231160450 231160110 1.200000e-78 303.0
39 TraesCS4D01G110600 chr6A 82.370 346 56 5 1956 2299 190389667 190390009 2.010000e-76 296.0
40 TraesCS4D01G110600 chr6A 78.261 207 32 8 1135 1336 448351793 448351595 1.300000e-23 121.0
41 TraesCS4D01G110600 chr6B 89.041 365 37 3 1935 2298 61533926 61534288 1.460000e-122 449.0
42 TraesCS4D01G110600 chr1A 89.286 280 27 3 1937 2215 339003879 339003602 5.460000e-92 348.0
43 TraesCS4D01G110600 chr1A 92.771 83 5 1 2217 2298 339003492 339003410 4.660000e-23 119.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G110600 chr4D 91058919 91061584 2665 True 4924.0 4924 100.0000 1 2666 1 chr4D.!!$R1 2665
1 TraesCS4D01G110600 chr4D 410654498 410655288 790 False 1358.0 1358 97.7240 1 788 1 chr4D.!!$F1 787
2 TraesCS4D01G110600 chr4B 127686629 127688138 1509 True 1178.5 1797 94.6155 801 2660 2 chr4B.!!$R3 1859
3 TraesCS4D01G110600 chr4A 503235168 503236780 1612 True 1072.5 1757 91.6025 787 2666 2 chr4A.!!$R1 1879
4 TraesCS4D01G110600 chr5D 277072860 277073648 788 True 1384.0 1384 98.3540 1 788 1 chr5D.!!$R1 787
5 TraesCS4D01G110600 chr5D 212632439 212633227 788 False 1369.0 1369 97.9770 1 789 1 chr5D.!!$F1 788
6 TraesCS4D01G110600 chr5D 421450702 421451489 787 False 1349.0 1349 97.5920 1 787 1 chr5D.!!$F4 786
7 TraesCS4D01G110600 chr5D 543053995 543054784 789 False 1349.0 1349 97.4750 1 790 1 chr5D.!!$F5 789
8 TraesCS4D01G110600 chr6D 127944262 127945047 785 True 1369.0 1369 98.0990 1 787 1 chr6D.!!$R1 786
9 TraesCS4D01G110600 chr1D 12190169 12190959 790 True 1358.0 1358 97.7240 1 788 1 chr1D.!!$R1 787
10 TraesCS4D01G110600 chr7D 546260640 546261433 793 True 1354.0 1354 97.4870 1 793 1 chr7D.!!$R2 792
11 TraesCS4D01G110600 chrUn 95194629 95195418 789 False 1352.0 1352 97.5950 1 788 1 chrUn.!!$F2 787

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
916 938 2.278271 GCTCTACTGCCTCGTCGC 60.278 66.667 0.0 0.0 0.0 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2093 2118 0.730494 GCGCATGCAAGACAACCTTC 60.73 55.0 19.57 0.0 42.15 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
409 411 5.726980 TTCGTTAACTTGGCTAAGGTAGA 57.273 39.130 14.86 3.87 37.39 2.59
799 807 5.883180 AGGAGTAGAGATGACCATACCTAC 58.117 45.833 10.63 10.63 0.00 3.18
816 824 7.987458 CCATACCTACATAGTGAAAATGACTGT 59.013 37.037 0.00 0.00 0.00 3.55
916 938 2.278271 GCTCTACTGCCTCGTCGC 60.278 66.667 0.00 0.00 0.00 5.19
961 983 2.484264 GCCACACTCTCGTATGCTTTTT 59.516 45.455 0.00 0.00 0.00 1.94
1005 1027 2.101783 CTGCTCCCACATAAAATGGCA 58.898 47.619 0.00 0.00 35.74 4.92
1029 1051 1.237285 ACAATGACACCAAGCTCGCC 61.237 55.000 0.00 0.00 0.00 5.54
1044 1066 3.827898 GCCGTAGCAGAGCTCGGT 61.828 66.667 21.67 14.23 44.60 4.69
1086 1108 0.464036 TGAAACTCTGCACCGTCTGT 59.536 50.000 0.00 0.00 0.00 3.41
1116 1138 3.311110 ACCCACGACGCCATGTCT 61.311 61.111 0.00 0.00 45.87 3.41
1682 1704 8.985315 TCAGATTGATATATGGCTTGAACTTT 57.015 30.769 0.00 0.00 0.00 2.66
1718 1740 1.065551 GTGTGGGTGAAGCTTGAACAC 59.934 52.381 2.10 9.38 0.00 3.32
1824 1849 9.232473 TCCTAGCTTGTGATGTACAGTATATAG 57.768 37.037 0.33 0.00 41.10 1.31
1947 1972 9.182214 TCGACATGGTATAACTTATATACTCCC 57.818 37.037 0.00 0.00 32.53 4.30
1948 1973 9.186837 CGACATGGTATAACTTATATACTCCCT 57.813 37.037 0.00 0.00 32.53 4.20
1968 1993 8.383947 ACTCCCTCTATTTTTATATACAAGGCC 58.616 37.037 0.00 0.00 0.00 5.19
1969 1994 8.282801 TCCCTCTATTTTTATATACAAGGCCA 57.717 34.615 5.01 0.00 0.00 5.36
1970 1995 8.161425 TCCCTCTATTTTTATATACAAGGCCAC 58.839 37.037 5.01 0.00 0.00 5.01
1971 1996 7.942341 CCCTCTATTTTTATATACAAGGCCACA 59.058 37.037 5.01 0.00 0.00 4.17
1972 1997 9.349713 CCTCTATTTTTATATACAAGGCCACAA 57.650 33.333 5.01 0.00 0.00 3.33
1983 2008 5.543507 ACAAGGCCACAATCAAAATTACA 57.456 34.783 5.01 0.00 0.00 2.41
1984 2009 5.923204 ACAAGGCCACAATCAAAATTACAA 58.077 33.333 5.01 0.00 0.00 2.41
1985 2010 6.532826 ACAAGGCCACAATCAAAATTACAAT 58.467 32.000 5.01 0.00 0.00 2.71
1986 2011 6.997476 ACAAGGCCACAATCAAAATTACAATT 59.003 30.769 5.01 0.00 0.00 2.32
1987 2012 7.501892 ACAAGGCCACAATCAAAATTACAATTT 59.498 29.630 5.01 0.00 40.15 1.82
1988 2013 8.997323 CAAGGCCACAATCAAAATTACAATTTA 58.003 29.630 5.01 0.00 37.62 1.40
1989 2014 8.546597 AGGCCACAATCAAAATTACAATTTAC 57.453 30.769 5.01 0.00 37.62 2.01
1990 2015 8.153550 AGGCCACAATCAAAATTACAATTTACA 58.846 29.630 5.01 0.00 37.62 2.41
1991 2016 8.778358 GGCCACAATCAAAATTACAATTTACAA 58.222 29.630 0.00 0.00 37.62 2.41
1992 2017 9.592720 GCCACAATCAAAATTACAATTTACAAC 57.407 29.630 0.56 0.00 37.62 3.32
2004 2029 8.865420 TTACAATTTACAACTATACAAGGCCA 57.135 30.769 5.01 0.00 0.00 5.36
2005 2030 7.153217 ACAATTTACAACTATACAAGGCCAC 57.847 36.000 5.01 0.00 0.00 5.01
2006 2031 6.717540 ACAATTTACAACTATACAAGGCCACA 59.282 34.615 5.01 0.00 0.00 4.17
2007 2032 7.231722 ACAATTTACAACTATACAAGGCCACAA 59.768 33.333 5.01 0.00 0.00 3.33
2008 2033 7.768807 ATTTACAACTATACAAGGCCACAAA 57.231 32.000 5.01 0.00 0.00 2.83
2009 2034 6.563222 TTACAACTATACAAGGCCACAAAC 57.437 37.500 5.01 0.00 0.00 2.93
2010 2035 4.465886 ACAACTATACAAGGCCACAAACA 58.534 39.130 5.01 0.00 0.00 2.83
2011 2036 4.277423 ACAACTATACAAGGCCACAAACAC 59.723 41.667 5.01 0.00 0.00 3.32
2012 2037 4.367039 ACTATACAAGGCCACAAACACT 57.633 40.909 5.01 0.00 0.00 3.55
2013 2038 5.492855 ACTATACAAGGCCACAAACACTA 57.507 39.130 5.01 0.00 0.00 2.74
2014 2039 5.871834 ACTATACAAGGCCACAAACACTAA 58.128 37.500 5.01 0.00 0.00 2.24
2015 2040 6.481643 ACTATACAAGGCCACAAACACTAAT 58.518 36.000 5.01 0.00 0.00 1.73
2016 2041 5.897377 ATACAAGGCCACAAACACTAATC 57.103 39.130 5.01 0.00 0.00 1.75
2017 2042 2.552315 ACAAGGCCACAAACACTAATCG 59.448 45.455 5.01 0.00 0.00 3.34
2018 2043 2.811431 CAAGGCCACAAACACTAATCGA 59.189 45.455 5.01 0.00 0.00 3.59
2019 2044 2.699954 AGGCCACAAACACTAATCGAG 58.300 47.619 5.01 0.00 0.00 4.04
2020 2045 2.301870 AGGCCACAAACACTAATCGAGA 59.698 45.455 5.01 0.00 0.00 4.04
2021 2046 2.415512 GGCCACAAACACTAATCGAGAC 59.584 50.000 0.00 0.00 0.00 3.36
2022 2047 3.064207 GCCACAAACACTAATCGAGACA 58.936 45.455 0.00 0.00 0.00 3.41
2023 2048 3.496884 GCCACAAACACTAATCGAGACAA 59.503 43.478 0.00 0.00 0.00 3.18
2024 2049 4.024387 GCCACAAACACTAATCGAGACAAA 60.024 41.667 0.00 0.00 0.00 2.83
2025 2050 5.504994 GCCACAAACACTAATCGAGACAAAA 60.505 40.000 0.00 0.00 0.00 2.44
2026 2051 6.668323 CCACAAACACTAATCGAGACAAAAT 58.332 36.000 0.00 0.00 0.00 1.82
2027 2052 7.138736 CCACAAACACTAATCGAGACAAAATT 58.861 34.615 0.00 0.00 0.00 1.82
2028 2053 7.113404 CCACAAACACTAATCGAGACAAAATTG 59.887 37.037 0.00 0.00 0.00 2.32
2029 2054 7.855409 CACAAACACTAATCGAGACAAAATTGA 59.145 33.333 0.00 0.00 0.00 2.57
2030 2055 8.567948 ACAAACACTAATCGAGACAAAATTGAT 58.432 29.630 0.00 0.00 0.00 2.57
2031 2056 8.843733 CAAACACTAATCGAGACAAAATTGATG 58.156 33.333 0.00 0.00 0.00 3.07
2032 2057 7.905604 ACACTAATCGAGACAAAATTGATGA 57.094 32.000 0.00 0.00 0.00 2.92
2033 2058 8.498054 ACACTAATCGAGACAAAATTGATGAT 57.502 30.769 0.00 0.00 0.00 2.45
2034 2059 9.599866 ACACTAATCGAGACAAAATTGATGATA 57.400 29.630 0.00 0.00 0.00 2.15
2039 2064 8.792831 ATCGAGACAAAATTGATGATATTTGC 57.207 30.769 0.00 0.00 36.48 3.68
2040 2065 7.195646 TCGAGACAAAATTGATGATATTTGCC 58.804 34.615 0.00 0.00 36.48 4.52
2041 2066 7.067372 TCGAGACAAAATTGATGATATTTGCCT 59.933 33.333 0.00 0.00 36.48 4.75
2042 2067 7.377928 CGAGACAAAATTGATGATATTTGCCTC 59.622 37.037 0.00 0.00 38.27 4.70
2043 2068 7.198390 AGACAAAATTGATGATATTTGCCTCG 58.802 34.615 0.00 0.00 36.48 4.63
2044 2069 6.866480 ACAAAATTGATGATATTTGCCTCGT 58.134 32.000 0.00 0.00 36.48 4.18
2045 2070 7.995289 ACAAAATTGATGATATTTGCCTCGTA 58.005 30.769 0.00 0.00 36.48 3.43
2046 2071 7.915397 ACAAAATTGATGATATTTGCCTCGTAC 59.085 33.333 0.00 0.00 36.48 3.67
2047 2072 7.807977 AAATTGATGATATTTGCCTCGTACT 57.192 32.000 0.00 0.00 0.00 2.73
2048 2073 8.902540 AAATTGATGATATTTGCCTCGTACTA 57.097 30.769 0.00 0.00 0.00 1.82
2049 2074 8.902540 AATTGATGATATTTGCCTCGTACTAA 57.097 30.769 0.00 0.00 0.00 2.24
2050 2075 7.709269 TTGATGATATTTGCCTCGTACTAAC 57.291 36.000 0.00 0.00 0.00 2.34
2051 2076 6.811954 TGATGATATTTGCCTCGTACTAACA 58.188 36.000 0.00 0.00 0.00 2.41
2052 2077 7.269316 TGATGATATTTGCCTCGTACTAACAA 58.731 34.615 0.00 0.00 0.00 2.83
2053 2078 7.766738 TGATGATATTTGCCTCGTACTAACAAA 59.233 33.333 0.00 0.00 34.97 2.83
2054 2079 7.534085 TGATATTTGCCTCGTACTAACAAAG 57.466 36.000 0.00 0.00 34.08 2.77
2055 2080 7.324935 TGATATTTGCCTCGTACTAACAAAGA 58.675 34.615 0.00 0.00 34.08 2.52
2056 2081 7.820386 TGATATTTGCCTCGTACTAACAAAGAA 59.180 33.333 0.00 0.00 34.08 2.52
2057 2082 5.917541 TTTGCCTCGTACTAACAAAGAAG 57.082 39.130 0.00 0.00 0.00 2.85
2058 2083 3.921677 TGCCTCGTACTAACAAAGAAGG 58.078 45.455 0.00 0.00 0.00 3.46
2059 2084 3.575256 TGCCTCGTACTAACAAAGAAGGA 59.425 43.478 0.00 0.00 0.00 3.36
2060 2085 3.925299 GCCTCGTACTAACAAAGAAGGAC 59.075 47.826 0.00 0.00 0.00 3.85
2061 2086 4.560108 GCCTCGTACTAACAAAGAAGGACA 60.560 45.833 0.00 0.00 0.00 4.02
2062 2087 5.721232 CCTCGTACTAACAAAGAAGGACAT 58.279 41.667 0.00 0.00 0.00 3.06
2063 2088 6.164176 CCTCGTACTAACAAAGAAGGACATT 58.836 40.000 0.00 0.00 0.00 2.71
2064 2089 7.318141 CCTCGTACTAACAAAGAAGGACATTA 58.682 38.462 0.00 0.00 0.00 1.90
2065 2090 7.816031 CCTCGTACTAACAAAGAAGGACATTAA 59.184 37.037 0.00 0.00 0.00 1.40
2066 2091 9.367444 CTCGTACTAACAAAGAAGGACATTAAT 57.633 33.333 0.00 0.00 0.00 1.40
2067 2092 9.715121 TCGTACTAACAAAGAAGGACATTAATT 57.285 29.630 0.00 0.00 0.00 1.40
2080 2105 6.752168 AGGACATTAATTATCCTTTGCATGC 58.248 36.000 11.82 11.82 40.03 4.06
2081 2106 6.324512 AGGACATTAATTATCCTTTGCATGCA 59.675 34.615 18.46 18.46 40.03 3.96
2082 2107 7.015877 AGGACATTAATTATCCTTTGCATGCAT 59.984 33.333 23.37 8.77 40.03 3.96
2083 2108 7.117236 GGACATTAATTATCCTTTGCATGCATG 59.883 37.037 23.37 22.70 0.00 4.06
2084 2109 7.502696 ACATTAATTATCCTTTGCATGCATGT 58.497 30.769 26.79 14.68 0.00 3.21
2085 2110 7.439955 ACATTAATTATCCTTTGCATGCATGTG 59.560 33.333 26.79 14.02 0.00 3.21
2086 2111 5.601583 AATTATCCTTTGCATGCATGTGA 57.398 34.783 26.79 17.55 0.00 3.58
2087 2112 4.642445 TTATCCTTTGCATGCATGTGAG 57.358 40.909 26.79 19.97 0.00 3.51
2088 2113 1.913778 TCCTTTGCATGCATGTGAGT 58.086 45.000 26.79 0.00 0.00 3.41
2089 2114 1.542472 TCCTTTGCATGCATGTGAGTG 59.458 47.619 26.79 13.60 0.00 3.51
2090 2115 1.271379 CCTTTGCATGCATGTGAGTGT 59.729 47.619 26.79 0.00 0.00 3.55
2091 2116 2.324860 CTTTGCATGCATGTGAGTGTG 58.675 47.619 26.79 1.63 0.00 3.82
2092 2117 1.606903 TTGCATGCATGTGAGTGTGA 58.393 45.000 26.79 0.00 0.00 3.58
2093 2118 1.161843 TGCATGCATGTGAGTGTGAG 58.838 50.000 26.79 0.00 0.00 3.51
2094 2119 1.270947 TGCATGCATGTGAGTGTGAGA 60.271 47.619 26.79 0.00 0.00 3.27
2095 2120 1.808343 GCATGCATGTGAGTGTGAGAA 59.192 47.619 26.79 0.00 0.00 2.87
2096 2121 2.159558 GCATGCATGTGAGTGTGAGAAG 60.160 50.000 26.79 0.00 0.00 2.85
2097 2122 2.174363 TGCATGTGAGTGTGAGAAGG 57.826 50.000 0.00 0.00 0.00 3.46
2098 2123 1.417517 TGCATGTGAGTGTGAGAAGGT 59.582 47.619 0.00 0.00 0.00 3.50
2099 2124 2.158769 TGCATGTGAGTGTGAGAAGGTT 60.159 45.455 0.00 0.00 0.00 3.50
2100 2125 2.225019 GCATGTGAGTGTGAGAAGGTTG 59.775 50.000 0.00 0.00 0.00 3.77
2101 2126 3.470709 CATGTGAGTGTGAGAAGGTTGT 58.529 45.455 0.00 0.00 0.00 3.32
2102 2127 3.179443 TGTGAGTGTGAGAAGGTTGTC 57.821 47.619 0.00 0.00 0.00 3.18
2103 2128 2.766263 TGTGAGTGTGAGAAGGTTGTCT 59.234 45.455 0.00 0.00 0.00 3.41
2104 2129 3.197766 TGTGAGTGTGAGAAGGTTGTCTT 59.802 43.478 0.00 0.00 38.65 3.01
2105 2130 3.557595 GTGAGTGTGAGAAGGTTGTCTTG 59.442 47.826 0.00 0.00 35.50 3.02
2106 2131 2.545946 GAGTGTGAGAAGGTTGTCTTGC 59.454 50.000 0.00 0.00 35.50 4.01
2107 2132 2.092968 AGTGTGAGAAGGTTGTCTTGCA 60.093 45.455 0.00 0.00 35.50 4.08
2108 2133 2.880890 GTGTGAGAAGGTTGTCTTGCAT 59.119 45.455 0.00 0.00 35.50 3.96
2109 2134 2.880268 TGTGAGAAGGTTGTCTTGCATG 59.120 45.455 0.00 0.00 35.50 4.06
2110 2135 1.881973 TGAGAAGGTTGTCTTGCATGC 59.118 47.619 11.82 11.82 35.50 4.06
2111 2136 0.877071 AGAAGGTTGTCTTGCATGCG 59.123 50.000 14.09 0.00 35.50 4.73
2112 2137 0.730494 GAAGGTTGTCTTGCATGCGC 60.730 55.000 14.09 0.00 35.50 6.09
2113 2138 2.126346 GGTTGTCTTGCATGCGCC 60.126 61.111 14.09 0.87 37.32 6.53
2114 2139 2.629656 GGTTGTCTTGCATGCGCCT 61.630 57.895 14.09 0.00 37.32 5.52
2115 2140 1.154150 GTTGTCTTGCATGCGCCTC 60.154 57.895 14.09 4.58 37.32 4.70
2116 2141 1.600356 TTGTCTTGCATGCGCCTCA 60.600 52.632 14.09 7.25 37.32 3.86
2117 2142 0.961857 TTGTCTTGCATGCGCCTCAT 60.962 50.000 14.09 0.00 37.32 2.90
2118 2143 0.961857 TGTCTTGCATGCGCCTCATT 60.962 50.000 14.09 0.00 37.32 2.57
2119 2144 1.016627 GTCTTGCATGCGCCTCATTA 58.983 50.000 14.09 0.00 37.32 1.90
2120 2145 1.401552 GTCTTGCATGCGCCTCATTAA 59.598 47.619 14.09 0.00 37.32 1.40
2121 2146 2.033801 GTCTTGCATGCGCCTCATTAAT 59.966 45.455 14.09 0.00 37.32 1.40
2122 2147 2.291465 TCTTGCATGCGCCTCATTAATC 59.709 45.455 14.09 0.00 37.32 1.75
2123 2148 1.677942 TGCATGCGCCTCATTAATCA 58.322 45.000 14.09 0.00 37.32 2.57
2124 2149 2.022934 TGCATGCGCCTCATTAATCAA 58.977 42.857 14.09 0.00 37.32 2.57
2125 2150 2.223548 TGCATGCGCCTCATTAATCAAC 60.224 45.455 14.09 0.00 37.32 3.18
2126 2151 2.859806 GCATGCGCCTCATTAATCAACC 60.860 50.000 4.18 0.00 31.79 3.77
2127 2152 2.121291 TGCGCCTCATTAATCAACCA 57.879 45.000 4.18 0.00 0.00 3.67
2128 2153 2.441410 TGCGCCTCATTAATCAACCAA 58.559 42.857 4.18 0.00 0.00 3.67
2129 2154 2.822561 TGCGCCTCATTAATCAACCAAA 59.177 40.909 4.18 0.00 0.00 3.28
2130 2155 3.256879 TGCGCCTCATTAATCAACCAAAA 59.743 39.130 4.18 0.00 0.00 2.44
2131 2156 3.859386 GCGCCTCATTAATCAACCAAAAG 59.141 43.478 0.00 0.00 0.00 2.27
2132 2157 4.423732 CGCCTCATTAATCAACCAAAAGG 58.576 43.478 0.00 0.00 0.00 3.11
2133 2158 4.157656 CGCCTCATTAATCAACCAAAAGGA 59.842 41.667 0.00 0.00 0.00 3.36
2134 2159 5.654497 GCCTCATTAATCAACCAAAAGGAG 58.346 41.667 0.00 0.00 31.41 3.69
2135 2160 5.185828 GCCTCATTAATCAACCAAAAGGAGT 59.814 40.000 0.00 0.00 30.02 3.85
2136 2161 6.624423 CCTCATTAATCAACCAAAAGGAGTG 58.376 40.000 0.00 0.00 30.02 3.51
2137 2162 6.209391 CCTCATTAATCAACCAAAAGGAGTGT 59.791 38.462 0.00 0.00 30.02 3.55
2138 2163 6.980593 TCATTAATCAACCAAAAGGAGTGTG 58.019 36.000 0.00 0.00 0.00 3.82
2139 2164 6.775142 TCATTAATCAACCAAAAGGAGTGTGA 59.225 34.615 0.00 0.00 0.00 3.58
2140 2165 6.633500 TTAATCAACCAAAAGGAGTGTGAG 57.367 37.500 0.00 0.00 0.00 3.51
2141 2166 2.297701 TCAACCAAAAGGAGTGTGAGC 58.702 47.619 0.00 0.00 0.00 4.26
2142 2167 2.023673 CAACCAAAAGGAGTGTGAGCA 58.976 47.619 0.00 0.00 0.00 4.26
2143 2168 2.624838 CAACCAAAAGGAGTGTGAGCAT 59.375 45.455 0.00 0.00 0.00 3.79
2144 2169 2.949447 ACCAAAAGGAGTGTGAGCATT 58.051 42.857 0.00 0.00 0.00 3.56
2145 2170 2.624838 ACCAAAAGGAGTGTGAGCATTG 59.375 45.455 0.00 0.00 0.00 2.82
2146 2171 2.029649 CCAAAAGGAGTGTGAGCATTGG 60.030 50.000 0.00 0.00 0.00 3.16
2147 2172 2.886523 CAAAAGGAGTGTGAGCATTGGA 59.113 45.455 0.00 0.00 0.00 3.53
2148 2173 3.446442 AAAGGAGTGTGAGCATTGGAT 57.554 42.857 0.00 0.00 0.00 3.41
2149 2174 3.446442 AAGGAGTGTGAGCATTGGATT 57.554 42.857 0.00 0.00 0.00 3.01
2150 2175 2.719739 AGGAGTGTGAGCATTGGATTG 58.280 47.619 0.00 0.00 0.00 2.67
2151 2176 2.040813 AGGAGTGTGAGCATTGGATTGT 59.959 45.455 0.00 0.00 0.00 2.71
2152 2177 2.821969 GGAGTGTGAGCATTGGATTGTT 59.178 45.455 0.00 0.00 0.00 2.83
2153 2178 3.366679 GGAGTGTGAGCATTGGATTGTTG 60.367 47.826 0.00 0.00 0.00 3.33
2154 2179 3.225104 AGTGTGAGCATTGGATTGTTGT 58.775 40.909 0.00 0.00 0.00 3.32
2155 2180 4.397420 AGTGTGAGCATTGGATTGTTGTA 58.603 39.130 0.00 0.00 0.00 2.41
2156 2181 4.456911 AGTGTGAGCATTGGATTGTTGTAG 59.543 41.667 0.00 0.00 0.00 2.74
2157 2182 3.758023 TGTGAGCATTGGATTGTTGTAGG 59.242 43.478 0.00 0.00 0.00 3.18
2158 2183 3.758554 GTGAGCATTGGATTGTTGTAGGT 59.241 43.478 0.00 0.00 0.00 3.08
2159 2184 3.758023 TGAGCATTGGATTGTTGTAGGTG 59.242 43.478 0.00 0.00 0.00 4.00
2160 2185 3.091545 AGCATTGGATTGTTGTAGGTGG 58.908 45.455 0.00 0.00 0.00 4.61
2161 2186 2.166254 GCATTGGATTGTTGTAGGTGGG 59.834 50.000 0.00 0.00 0.00 4.61
2162 2187 3.696045 CATTGGATTGTTGTAGGTGGGA 58.304 45.455 0.00 0.00 0.00 4.37
2163 2188 2.871096 TGGATTGTTGTAGGTGGGAC 57.129 50.000 0.00 0.00 0.00 4.46
2164 2189 2.058705 TGGATTGTTGTAGGTGGGACA 58.941 47.619 0.00 0.00 0.00 4.02
2165 2190 2.647299 TGGATTGTTGTAGGTGGGACAT 59.353 45.455 0.00 0.00 44.52 3.06
2166 2191 3.847184 TGGATTGTTGTAGGTGGGACATA 59.153 43.478 0.00 0.00 44.52 2.29
2167 2192 4.289934 TGGATTGTTGTAGGTGGGACATAA 59.710 41.667 0.00 0.00 44.52 1.90
2168 2193 5.222151 TGGATTGTTGTAGGTGGGACATAAA 60.222 40.000 0.00 0.00 44.52 1.40
2169 2194 5.712917 GGATTGTTGTAGGTGGGACATAAAA 59.287 40.000 0.00 0.00 44.52 1.52
2170 2195 6.209788 GGATTGTTGTAGGTGGGACATAAAAA 59.790 38.462 0.00 0.00 44.52 1.94
2171 2196 7.093509 GGATTGTTGTAGGTGGGACATAAAAAT 60.094 37.037 0.00 0.00 44.52 1.82
2172 2197 8.887264 ATTGTTGTAGGTGGGACATAAAAATA 57.113 30.769 0.00 0.00 44.52 1.40
2173 2198 8.887264 TTGTTGTAGGTGGGACATAAAAATAT 57.113 30.769 0.00 0.00 44.52 1.28
2174 2199 8.287439 TGTTGTAGGTGGGACATAAAAATATG 57.713 34.615 0.00 0.00 44.52 1.78
2175 2200 6.952773 TGTAGGTGGGACATAAAAATATGC 57.047 37.500 0.00 0.00 44.52 3.14
2176 2201 6.427441 TGTAGGTGGGACATAAAAATATGCA 58.573 36.000 0.00 0.00 44.52 3.96
2177 2202 7.066142 TGTAGGTGGGACATAAAAATATGCAT 58.934 34.615 3.79 3.79 44.52 3.96
2178 2203 7.563188 TGTAGGTGGGACATAAAAATATGCATT 59.437 33.333 3.54 0.00 44.52 3.56
2179 2204 9.073475 GTAGGTGGGACATAAAAATATGCATTA 57.927 33.333 3.54 0.00 44.52 1.90
2180 2205 8.546083 AGGTGGGACATAAAAATATGCATTAA 57.454 30.769 3.54 0.00 44.52 1.40
2181 2206 9.158097 AGGTGGGACATAAAAATATGCATTAAT 57.842 29.630 3.54 0.00 44.52 1.40
2182 2207 9.777297 GGTGGGACATAAAAATATGCATTAATT 57.223 29.630 3.54 0.00 44.52 1.40
2198 2223 8.903570 TGCATTAATTAATACGACAAACAAGG 57.096 30.769 10.34 0.00 0.00 3.61
2199 2224 8.731605 TGCATTAATTAATACGACAAACAAGGA 58.268 29.630 10.34 0.00 0.00 3.36
2200 2225 9.221775 GCATTAATTAATACGACAAACAAGGAG 57.778 33.333 10.34 0.00 0.00 3.69
2203 2228 7.972832 AATTAATACGACAAACAAGGAGACA 57.027 32.000 0.00 0.00 0.00 3.41
2204 2229 7.972832 ATTAATACGACAAACAAGGAGACAA 57.027 32.000 0.00 0.00 0.00 3.18
2205 2230 5.668558 AATACGACAAACAAGGAGACAAC 57.331 39.130 0.00 0.00 0.00 3.32
2206 2231 2.285977 ACGACAAACAAGGAGACAACC 58.714 47.619 0.00 0.00 0.00 3.77
2207 2232 2.093128 ACGACAAACAAGGAGACAACCT 60.093 45.455 0.00 0.00 42.69 3.50
2208 2233 3.133362 ACGACAAACAAGGAGACAACCTA 59.867 43.478 0.00 0.00 39.62 3.08
2209 2234 3.741344 CGACAAACAAGGAGACAACCTAG 59.259 47.826 0.00 0.00 39.62 3.02
2210 2235 3.477530 ACAAACAAGGAGACAACCTAGC 58.522 45.455 0.00 0.00 39.62 3.42
2211 2236 3.136626 ACAAACAAGGAGACAACCTAGCT 59.863 43.478 0.00 0.00 39.62 3.32
2212 2237 4.137543 CAAACAAGGAGACAACCTAGCTT 58.862 43.478 0.00 0.00 39.62 3.74
2213 2238 3.409026 ACAAGGAGACAACCTAGCTTG 57.591 47.619 0.00 0.00 39.62 4.01
2214 2239 2.079925 CAAGGAGACAACCTAGCTTGC 58.920 52.381 0.00 0.00 39.62 4.01
2215 2240 1.352083 AGGAGACAACCTAGCTTGCA 58.648 50.000 0.00 0.00 38.65 4.08
2216 2241 1.699634 AGGAGACAACCTAGCTTGCAA 59.300 47.619 0.00 0.00 38.65 4.08
2217 2242 2.307098 AGGAGACAACCTAGCTTGCAAT 59.693 45.455 0.00 0.00 38.65 3.56
2218 2243 3.519510 AGGAGACAACCTAGCTTGCAATA 59.480 43.478 0.00 0.00 38.65 1.90
2219 2244 4.164988 AGGAGACAACCTAGCTTGCAATAT 59.835 41.667 0.00 0.00 38.65 1.28
2220 2245 4.884164 GGAGACAACCTAGCTTGCAATATT 59.116 41.667 0.00 0.00 0.00 1.28
2221 2246 6.055588 GGAGACAACCTAGCTTGCAATATTA 58.944 40.000 0.00 0.00 0.00 0.98
2222 2247 6.542370 GGAGACAACCTAGCTTGCAATATTAA 59.458 38.462 0.00 0.00 0.00 1.40
2223 2248 7.321745 AGACAACCTAGCTTGCAATATTAAC 57.678 36.000 0.00 0.00 0.00 2.01
2224 2249 7.112779 AGACAACCTAGCTTGCAATATTAACT 58.887 34.615 0.00 0.00 0.00 2.24
2225 2250 7.611855 AGACAACCTAGCTTGCAATATTAACTT 59.388 33.333 0.00 0.00 0.00 2.66
2226 2251 8.801882 ACAACCTAGCTTGCAATATTAACTTA 57.198 30.769 0.00 0.00 0.00 2.24
2227 2252 9.238368 ACAACCTAGCTTGCAATATTAACTTAA 57.762 29.630 0.00 0.00 0.00 1.85
2228 2253 9.722056 CAACCTAGCTTGCAATATTAACTTAAG 57.278 33.333 0.00 0.00 0.00 1.85
2229 2254 7.931275 ACCTAGCTTGCAATATTAACTTAAGC 58.069 34.615 0.00 0.00 39.32 3.09
2230 2255 7.556275 ACCTAGCTTGCAATATTAACTTAAGCA 59.444 33.333 0.00 7.02 40.93 3.91
2231 2256 7.857885 CCTAGCTTGCAATATTAACTTAAGCAC 59.142 37.037 0.00 1.56 40.93 4.40
2232 2257 7.156876 AGCTTGCAATATTAACTTAAGCACA 57.843 32.000 0.00 0.00 40.93 4.57
2233 2258 7.029563 AGCTTGCAATATTAACTTAAGCACAC 58.970 34.615 0.00 5.29 40.93 3.82
2234 2259 6.806249 GCTTGCAATATTAACTTAAGCACACA 59.194 34.615 0.00 0.00 38.97 3.72
2235 2260 7.489113 GCTTGCAATATTAACTTAAGCACACAT 59.511 33.333 0.00 0.00 38.97 3.21
2236 2261 9.357652 CTTGCAATATTAACTTAAGCACACATT 57.642 29.630 0.00 0.00 0.00 2.71
2237 2262 9.703892 TTGCAATATTAACTTAAGCACACATTT 57.296 25.926 1.29 0.00 0.00 2.32
2245 2270 7.463469 AACTTAAGCACACATTTACTTTTGC 57.537 32.000 1.29 0.00 0.00 3.68
2246 2271 5.983118 ACTTAAGCACACATTTACTTTTGCC 59.017 36.000 1.29 0.00 0.00 4.52
2247 2272 4.670896 AAGCACACATTTACTTTTGCCT 57.329 36.364 0.00 0.00 0.00 4.75
2248 2273 4.670896 AGCACACATTTACTTTTGCCTT 57.329 36.364 0.00 0.00 0.00 4.35
2249 2274 4.370917 AGCACACATTTACTTTTGCCTTG 58.629 39.130 0.00 0.00 0.00 3.61
2250 2275 3.494251 GCACACATTTACTTTTGCCTTGG 59.506 43.478 0.00 0.00 0.00 3.61
2251 2276 4.692228 CACACATTTACTTTTGCCTTGGT 58.308 39.130 0.00 0.00 0.00 3.67
2252 2277 5.737635 GCACACATTTACTTTTGCCTTGGTA 60.738 40.000 0.00 0.00 0.00 3.25
2253 2278 5.689961 CACACATTTACTTTTGCCTTGGTAC 59.310 40.000 0.00 0.00 0.00 3.34
2254 2279 5.221362 ACACATTTACTTTTGCCTTGGTACC 60.221 40.000 4.43 4.43 0.00 3.34
2255 2280 5.010617 CACATTTACTTTTGCCTTGGTACCT 59.989 40.000 14.36 0.00 0.00 3.08
2256 2281 5.010617 ACATTTACTTTTGCCTTGGTACCTG 59.989 40.000 14.36 5.99 0.00 4.00
2257 2282 2.748209 ACTTTTGCCTTGGTACCTGT 57.252 45.000 14.36 0.00 0.00 4.00
2258 2283 3.868619 ACTTTTGCCTTGGTACCTGTA 57.131 42.857 14.36 0.00 0.00 2.74
2259 2284 4.173290 ACTTTTGCCTTGGTACCTGTAA 57.827 40.909 14.36 4.87 0.00 2.41
2260 2285 4.736473 ACTTTTGCCTTGGTACCTGTAAT 58.264 39.130 14.36 0.00 0.00 1.89
2261 2286 5.883180 ACTTTTGCCTTGGTACCTGTAATA 58.117 37.500 14.36 2.62 0.00 0.98
2262 2287 6.490492 ACTTTTGCCTTGGTACCTGTAATAT 58.510 36.000 14.36 0.00 0.00 1.28
2263 2288 6.377146 ACTTTTGCCTTGGTACCTGTAATATG 59.623 38.462 14.36 0.00 0.00 1.78
2264 2289 5.444744 TTGCCTTGGTACCTGTAATATGT 57.555 39.130 14.36 0.00 0.00 2.29
2265 2290 4.776349 TGCCTTGGTACCTGTAATATGTG 58.224 43.478 14.36 0.00 0.00 3.21
2266 2291 4.226394 TGCCTTGGTACCTGTAATATGTGT 59.774 41.667 14.36 0.00 0.00 3.72
2267 2292 5.190677 GCCTTGGTACCTGTAATATGTGTT 58.809 41.667 14.36 0.00 0.00 3.32
2268 2293 5.650703 GCCTTGGTACCTGTAATATGTGTTT 59.349 40.000 14.36 0.00 0.00 2.83
2269 2294 6.404293 GCCTTGGTACCTGTAATATGTGTTTG 60.404 42.308 14.36 0.00 0.00 2.93
2270 2295 6.657541 CCTTGGTACCTGTAATATGTGTTTGT 59.342 38.462 14.36 0.00 0.00 2.83
2271 2296 7.361713 CCTTGGTACCTGTAATATGTGTTTGTG 60.362 40.741 14.36 0.00 0.00 3.33
2272 2297 6.770542 TGGTACCTGTAATATGTGTTTGTGA 58.229 36.000 14.36 0.00 0.00 3.58
2273 2298 6.651643 TGGTACCTGTAATATGTGTTTGTGAC 59.348 38.462 14.36 0.00 0.00 3.67
2274 2299 6.093082 GGTACCTGTAATATGTGTTTGTGACC 59.907 42.308 4.06 0.00 0.00 4.02
2275 2300 5.876357 ACCTGTAATATGTGTTTGTGACCT 58.124 37.500 0.00 0.00 0.00 3.85
2276 2301 6.303839 ACCTGTAATATGTGTTTGTGACCTT 58.696 36.000 0.00 0.00 0.00 3.50
2277 2302 6.206634 ACCTGTAATATGTGTTTGTGACCTTG 59.793 38.462 0.00 0.00 0.00 3.61
2278 2303 6.206634 CCTGTAATATGTGTTTGTGACCTTGT 59.793 38.462 0.00 0.00 0.00 3.16
2279 2304 7.389330 CCTGTAATATGTGTTTGTGACCTTGTA 59.611 37.037 0.00 0.00 0.00 2.41
2280 2305 8.856153 TGTAATATGTGTTTGTGACCTTGTAT 57.144 30.769 0.00 0.00 0.00 2.29
2281 2306 9.945904 TGTAATATGTGTTTGTGACCTTGTATA 57.054 29.630 0.00 0.00 0.00 1.47
2635 2750 5.712152 AACCAATACTTGCTTGAGAAAGG 57.288 39.130 3.86 0.00 34.93 3.11
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
90 91 3.690460 AGCCAAATCAACGGATCTCTTT 58.310 40.909 0.00 0.00 31.88 2.52
388 390 5.726980 TTCTACCTTAGCCAAGTTAACGA 57.273 39.130 0.00 0.00 0.00 3.85
916 938 6.320171 CGAACACAAGACCCCGTATATATAG 58.680 44.000 0.00 0.00 0.00 1.31
1005 1027 0.951558 GCTTGGTGTCATTGTCGGTT 59.048 50.000 0.00 0.00 0.00 4.44
1029 1051 1.934220 TTGGACCGAGCTCTGCTACG 61.934 60.000 12.85 0.00 39.88 3.51
1064 1086 0.166814 GACGGTGCAGAGTTTCATGC 59.833 55.000 0.00 0.00 42.86 4.06
1275 1297 3.896133 CCGATGGCCATGCTGCAC 61.896 66.667 26.56 6.35 0.00 4.57
1682 1704 6.934645 TCACCCACACAAAACATAAAACAAAA 59.065 30.769 0.00 0.00 0.00 2.44
1685 1707 5.661056 TCACCCACACAAAACATAAAACA 57.339 34.783 0.00 0.00 0.00 2.83
1686 1708 5.006261 GCTTCACCCACACAAAACATAAAAC 59.994 40.000 0.00 0.00 0.00 2.43
1691 1713 2.387757 AGCTTCACCCACACAAAACAT 58.612 42.857 0.00 0.00 0.00 2.71
1693 1715 2.165437 TCAAGCTTCACCCACACAAAAC 59.835 45.455 0.00 0.00 0.00 2.43
1694 1716 2.451490 TCAAGCTTCACCCACACAAAA 58.549 42.857 0.00 0.00 0.00 2.44
1695 1717 2.136298 TCAAGCTTCACCCACACAAA 57.864 45.000 0.00 0.00 0.00 2.83
1696 1718 1.748493 GTTCAAGCTTCACCCACACAA 59.252 47.619 0.00 0.00 0.00 3.33
1697 1719 1.340502 TGTTCAAGCTTCACCCACACA 60.341 47.619 0.00 0.00 0.00 3.72
1698 1720 1.065551 GTGTTCAAGCTTCACCCACAC 59.934 52.381 0.00 1.78 0.00 3.82
1699 1721 1.340502 TGTGTTCAAGCTTCACCCACA 60.341 47.619 12.69 12.12 0.00 4.17
1700 1722 1.065551 GTGTGTTCAAGCTTCACCCAC 59.934 52.381 12.69 9.04 0.00 4.61
1701 1723 1.064758 AGTGTGTTCAAGCTTCACCCA 60.065 47.619 12.69 1.19 0.00 4.51
1718 1740 4.821805 AGAGAAACACACCCATAACAAGTG 59.178 41.667 0.00 0.00 37.53 3.16
1909 1934 4.811969 ACCATGTCGAATACCTTGTACA 57.188 40.909 0.00 0.00 0.00 2.90
1910 1935 8.139989 AGTTATACCATGTCGAATACCTTGTAC 58.860 37.037 0.00 0.00 0.00 2.90
1942 1967 8.383947 GGCCTTGTATATAAAAATAGAGGGAGT 58.616 37.037 0.00 0.00 26.80 3.85
1943 1968 8.383175 TGGCCTTGTATATAAAAATAGAGGGAG 58.617 37.037 3.32 0.00 26.80 4.30
1944 1969 8.161425 GTGGCCTTGTATATAAAAATAGAGGGA 58.839 37.037 3.32 0.00 26.80 4.20
1945 1970 7.942341 TGTGGCCTTGTATATAAAAATAGAGGG 59.058 37.037 3.32 0.00 0.00 4.30
1946 1971 8.918202 TGTGGCCTTGTATATAAAAATAGAGG 57.082 34.615 3.32 0.00 0.00 3.69
1957 1982 8.976353 TGTAATTTTGATTGTGGCCTTGTATAT 58.024 29.630 3.32 0.00 0.00 0.86
1958 1983 8.354711 TGTAATTTTGATTGTGGCCTTGTATA 57.645 30.769 3.32 0.00 0.00 1.47
1959 1984 7.238486 TGTAATTTTGATTGTGGCCTTGTAT 57.762 32.000 3.32 0.00 0.00 2.29
1960 1985 6.656632 TGTAATTTTGATTGTGGCCTTGTA 57.343 33.333 3.32 0.00 0.00 2.41
1961 1986 5.543507 TGTAATTTTGATTGTGGCCTTGT 57.456 34.783 3.32 0.00 0.00 3.16
1962 1987 7.437793 AATTGTAATTTTGATTGTGGCCTTG 57.562 32.000 3.32 0.00 0.00 3.61
1963 1988 8.998377 GTAAATTGTAATTTTGATTGTGGCCTT 58.002 29.630 3.32 0.00 39.24 4.35
1964 1989 8.153550 TGTAAATTGTAATTTTGATTGTGGCCT 58.846 29.630 3.32 0.00 39.24 5.19
1965 1990 8.316640 TGTAAATTGTAATTTTGATTGTGGCC 57.683 30.769 7.78 0.00 39.24 5.36
1966 1991 9.592720 GTTGTAAATTGTAATTTTGATTGTGGC 57.407 29.630 7.78 0.00 39.24 5.01
1978 2003 9.469097 TGGCCTTGTATAGTTGTAAATTGTAAT 57.531 29.630 3.32 0.00 0.00 1.89
1979 2004 8.732531 GTGGCCTTGTATAGTTGTAAATTGTAA 58.267 33.333 3.32 0.00 0.00 2.41
1980 2005 7.883833 TGTGGCCTTGTATAGTTGTAAATTGTA 59.116 33.333 3.32 0.00 0.00 2.41
1981 2006 6.717540 TGTGGCCTTGTATAGTTGTAAATTGT 59.282 34.615 3.32 0.00 0.00 2.71
1982 2007 7.151999 TGTGGCCTTGTATAGTTGTAAATTG 57.848 36.000 3.32 0.00 0.00 2.32
1983 2008 7.768807 TTGTGGCCTTGTATAGTTGTAAATT 57.231 32.000 3.32 0.00 0.00 1.82
1984 2009 7.231722 TGTTTGTGGCCTTGTATAGTTGTAAAT 59.768 33.333 3.32 0.00 0.00 1.40
1985 2010 6.546403 TGTTTGTGGCCTTGTATAGTTGTAAA 59.454 34.615 3.32 0.00 0.00 2.01
1986 2011 6.016943 GTGTTTGTGGCCTTGTATAGTTGTAA 60.017 38.462 3.32 0.00 0.00 2.41
1987 2012 5.470777 GTGTTTGTGGCCTTGTATAGTTGTA 59.529 40.000 3.32 0.00 0.00 2.41
1988 2013 4.277423 GTGTTTGTGGCCTTGTATAGTTGT 59.723 41.667 3.32 0.00 0.00 3.32
1989 2014 4.518970 AGTGTTTGTGGCCTTGTATAGTTG 59.481 41.667 3.32 0.00 0.00 3.16
1990 2015 4.725490 AGTGTTTGTGGCCTTGTATAGTT 58.275 39.130 3.32 0.00 0.00 2.24
1991 2016 4.367039 AGTGTTTGTGGCCTTGTATAGT 57.633 40.909 3.32 0.00 0.00 2.12
1992 2017 6.238103 CGATTAGTGTTTGTGGCCTTGTATAG 60.238 42.308 3.32 0.00 0.00 1.31
1993 2018 5.583061 CGATTAGTGTTTGTGGCCTTGTATA 59.417 40.000 3.32 0.00 0.00 1.47
1994 2019 4.394920 CGATTAGTGTTTGTGGCCTTGTAT 59.605 41.667 3.32 0.00 0.00 2.29
1995 2020 3.749088 CGATTAGTGTTTGTGGCCTTGTA 59.251 43.478 3.32 0.00 0.00 2.41
1996 2021 2.552315 CGATTAGTGTTTGTGGCCTTGT 59.448 45.455 3.32 0.00 0.00 3.16
1997 2022 2.811431 TCGATTAGTGTTTGTGGCCTTG 59.189 45.455 3.32 0.00 0.00 3.61
1998 2023 3.074412 CTCGATTAGTGTTTGTGGCCTT 58.926 45.455 3.32 0.00 0.00 4.35
1999 2024 2.301870 TCTCGATTAGTGTTTGTGGCCT 59.698 45.455 3.32 0.00 0.00 5.19
2000 2025 2.415512 GTCTCGATTAGTGTTTGTGGCC 59.584 50.000 0.00 0.00 0.00 5.36
2001 2026 3.064207 TGTCTCGATTAGTGTTTGTGGC 58.936 45.455 0.00 0.00 0.00 5.01
2002 2027 5.666969 TTTGTCTCGATTAGTGTTTGTGG 57.333 39.130 0.00 0.00 0.00 4.17
2003 2028 7.855409 TCAATTTTGTCTCGATTAGTGTTTGTG 59.145 33.333 0.00 0.00 0.00 3.33
2004 2029 7.925993 TCAATTTTGTCTCGATTAGTGTTTGT 58.074 30.769 0.00 0.00 0.00 2.83
2005 2030 8.843733 CATCAATTTTGTCTCGATTAGTGTTTG 58.156 33.333 0.00 0.00 0.00 2.93
2006 2031 8.783093 TCATCAATTTTGTCTCGATTAGTGTTT 58.217 29.630 0.00 0.00 0.00 2.83
2007 2032 8.322906 TCATCAATTTTGTCTCGATTAGTGTT 57.677 30.769 0.00 0.00 0.00 3.32
2008 2033 7.905604 TCATCAATTTTGTCTCGATTAGTGT 57.094 32.000 0.00 0.00 0.00 3.55
2013 2038 9.241317 GCAAATATCATCAATTTTGTCTCGATT 57.759 29.630 0.00 0.00 32.88 3.34
2014 2039 7.864379 GGCAAATATCATCAATTTTGTCTCGAT 59.136 33.333 0.00 0.00 32.43 3.59
2015 2040 7.067372 AGGCAAATATCATCAATTTTGTCTCGA 59.933 33.333 0.00 0.00 39.15 4.04
2016 2041 7.198390 AGGCAAATATCATCAATTTTGTCTCG 58.802 34.615 0.00 0.00 39.15 4.04
2017 2042 8.571461 GAGGCAAATATCATCAATTTTGTCTC 57.429 34.615 11.60 11.60 46.89 3.36
2018 2043 7.148018 ACGAGGCAAATATCATCAATTTTGTCT 60.148 33.333 1.39 1.39 44.26 3.41
2019 2044 6.974622 ACGAGGCAAATATCATCAATTTTGTC 59.025 34.615 0.00 0.00 34.69 3.18
2020 2045 6.866480 ACGAGGCAAATATCATCAATTTTGT 58.134 32.000 0.00 0.00 32.88 2.83
2021 2046 8.131100 AGTACGAGGCAAATATCATCAATTTTG 58.869 33.333 0.00 0.00 33.32 2.44
2022 2047 8.225603 AGTACGAGGCAAATATCATCAATTTT 57.774 30.769 0.00 0.00 0.00 1.82
2023 2048 7.807977 AGTACGAGGCAAATATCATCAATTT 57.192 32.000 0.00 0.00 0.00 1.82
2024 2049 8.774586 GTTAGTACGAGGCAAATATCATCAATT 58.225 33.333 0.00 0.00 0.00 2.32
2025 2050 7.931407 TGTTAGTACGAGGCAAATATCATCAAT 59.069 33.333 0.00 0.00 0.00 2.57
2026 2051 7.269316 TGTTAGTACGAGGCAAATATCATCAA 58.731 34.615 0.00 0.00 0.00 2.57
2027 2052 6.811954 TGTTAGTACGAGGCAAATATCATCA 58.188 36.000 0.00 0.00 0.00 3.07
2028 2053 7.709269 TTGTTAGTACGAGGCAAATATCATC 57.291 36.000 0.00 0.00 0.00 2.92
2029 2054 7.985184 TCTTTGTTAGTACGAGGCAAATATCAT 59.015 33.333 0.00 0.00 0.00 2.45
2030 2055 7.324935 TCTTTGTTAGTACGAGGCAAATATCA 58.675 34.615 0.00 0.00 0.00 2.15
2031 2056 7.766219 TCTTTGTTAGTACGAGGCAAATATC 57.234 36.000 0.00 0.00 0.00 1.63
2032 2057 7.280205 CCTTCTTTGTTAGTACGAGGCAAATAT 59.720 37.037 0.00 0.00 0.00 1.28
2033 2058 6.592607 CCTTCTTTGTTAGTACGAGGCAAATA 59.407 38.462 0.00 1.20 0.00 1.40
2034 2059 5.411669 CCTTCTTTGTTAGTACGAGGCAAAT 59.588 40.000 0.00 0.00 0.00 2.32
2035 2060 4.753107 CCTTCTTTGTTAGTACGAGGCAAA 59.247 41.667 0.00 7.27 0.00 3.68
2036 2061 4.039488 TCCTTCTTTGTTAGTACGAGGCAA 59.961 41.667 0.00 0.00 0.00 4.52
2037 2062 3.575256 TCCTTCTTTGTTAGTACGAGGCA 59.425 43.478 0.00 0.00 0.00 4.75
2038 2063 3.925299 GTCCTTCTTTGTTAGTACGAGGC 59.075 47.826 0.00 0.00 0.00 4.70
2039 2064 5.130292 TGTCCTTCTTTGTTAGTACGAGG 57.870 43.478 0.00 0.00 0.00 4.63
2040 2065 8.752766 TTAATGTCCTTCTTTGTTAGTACGAG 57.247 34.615 0.00 0.00 0.00 4.18
2041 2066 9.715121 AATTAATGTCCTTCTTTGTTAGTACGA 57.285 29.630 0.00 0.00 0.00 3.43
2056 2081 6.324512 TGCATGCAAAGGATAATTAATGTCCT 59.675 34.615 20.30 14.10 44.04 3.85
2057 2082 6.514947 TGCATGCAAAGGATAATTAATGTCC 58.485 36.000 20.30 10.70 0.00 4.02
2058 2083 7.654520 ACATGCATGCAAAGGATAATTAATGTC 59.345 33.333 26.68 0.00 0.00 3.06
2059 2084 7.439955 CACATGCATGCAAAGGATAATTAATGT 59.560 33.333 26.68 16.15 0.00 2.71
2060 2085 7.654116 TCACATGCATGCAAAGGATAATTAATG 59.346 33.333 26.68 15.47 0.00 1.90
2061 2086 7.728148 TCACATGCATGCAAAGGATAATTAAT 58.272 30.769 26.68 0.00 0.00 1.40
2062 2087 7.110043 TCACATGCATGCAAAGGATAATTAA 57.890 32.000 26.68 0.00 0.00 1.40
2063 2088 6.321945 ACTCACATGCATGCAAAGGATAATTA 59.678 34.615 26.68 0.00 0.00 1.40
2064 2089 5.128171 ACTCACATGCATGCAAAGGATAATT 59.872 36.000 26.68 0.80 0.00 1.40
2065 2090 4.647853 ACTCACATGCATGCAAAGGATAAT 59.352 37.500 26.68 1.67 0.00 1.28
2066 2091 4.018490 ACTCACATGCATGCAAAGGATAA 58.982 39.130 26.68 5.91 0.00 1.75
2067 2092 3.379057 CACTCACATGCATGCAAAGGATA 59.621 43.478 26.68 7.52 0.00 2.59
2068 2093 2.165641 CACTCACATGCATGCAAAGGAT 59.834 45.455 26.68 4.34 0.00 3.24
2069 2094 1.542472 CACTCACATGCATGCAAAGGA 59.458 47.619 26.68 19.58 0.00 3.36
2070 2095 1.271379 ACACTCACATGCATGCAAAGG 59.729 47.619 26.68 19.04 0.00 3.11
2071 2096 2.030628 TCACACTCACATGCATGCAAAG 60.031 45.455 26.68 21.93 0.00 2.77
2072 2097 1.955080 TCACACTCACATGCATGCAAA 59.045 42.857 26.68 11.00 0.00 3.68
2073 2098 1.538075 CTCACACTCACATGCATGCAA 59.462 47.619 26.68 13.54 0.00 4.08
2074 2099 1.161843 CTCACACTCACATGCATGCA 58.838 50.000 26.53 25.04 0.00 3.96
2075 2100 1.445871 TCTCACACTCACATGCATGC 58.554 50.000 26.53 11.82 0.00 4.06
2076 2101 2.418976 CCTTCTCACACTCACATGCATG 59.581 50.000 25.09 25.09 0.00 4.06
2077 2102 2.039480 ACCTTCTCACACTCACATGCAT 59.961 45.455 0.00 0.00 0.00 3.96
2078 2103 1.417517 ACCTTCTCACACTCACATGCA 59.582 47.619 0.00 0.00 0.00 3.96
2079 2104 2.175878 ACCTTCTCACACTCACATGC 57.824 50.000 0.00 0.00 0.00 4.06
2080 2105 3.470709 ACAACCTTCTCACACTCACATG 58.529 45.455 0.00 0.00 0.00 3.21
2081 2106 3.389329 AGACAACCTTCTCACACTCACAT 59.611 43.478 0.00 0.00 0.00 3.21
2082 2107 2.766263 AGACAACCTTCTCACACTCACA 59.234 45.455 0.00 0.00 0.00 3.58
2083 2108 3.460857 AGACAACCTTCTCACACTCAC 57.539 47.619 0.00 0.00 0.00 3.51
2084 2109 3.797039 CAAGACAACCTTCTCACACTCA 58.203 45.455 0.00 0.00 31.42 3.41
2085 2110 2.545946 GCAAGACAACCTTCTCACACTC 59.454 50.000 0.00 0.00 31.42 3.51
2086 2111 2.092968 TGCAAGACAACCTTCTCACACT 60.093 45.455 0.00 0.00 31.42 3.55
2087 2112 2.288666 TGCAAGACAACCTTCTCACAC 58.711 47.619 0.00 0.00 31.42 3.82
2088 2113 2.708216 TGCAAGACAACCTTCTCACA 57.292 45.000 0.00 0.00 31.42 3.58
2089 2114 2.351157 GCATGCAAGACAACCTTCTCAC 60.351 50.000 14.21 0.00 31.42 3.51
2090 2115 1.881973 GCATGCAAGACAACCTTCTCA 59.118 47.619 14.21 0.00 31.42 3.27
2091 2116 1.135859 CGCATGCAAGACAACCTTCTC 60.136 52.381 19.57 0.00 31.42 2.87
2092 2117 0.877071 CGCATGCAAGACAACCTTCT 59.123 50.000 19.57 0.00 31.42 2.85
2093 2118 0.730494 GCGCATGCAAGACAACCTTC 60.730 55.000 19.57 0.00 42.15 3.46
2094 2119 1.286880 GCGCATGCAAGACAACCTT 59.713 52.632 19.57 0.00 42.15 3.50
2095 2120 2.629656 GGCGCATGCAAGACAACCT 61.630 57.895 19.57 0.00 45.35 3.50
2096 2121 2.126346 GGCGCATGCAAGACAACC 60.126 61.111 19.57 3.01 45.35 3.77
2097 2122 1.154150 GAGGCGCATGCAAGACAAC 60.154 57.895 19.57 0.00 45.35 3.32
2098 2123 0.961857 ATGAGGCGCATGCAAGACAA 60.962 50.000 19.57 0.00 45.35 3.18
2099 2124 0.961857 AATGAGGCGCATGCAAGACA 60.962 50.000 19.57 12.30 45.35 3.41
2100 2125 1.016627 TAATGAGGCGCATGCAAGAC 58.983 50.000 19.57 4.10 45.35 3.01
2101 2126 1.748950 TTAATGAGGCGCATGCAAGA 58.251 45.000 19.57 0.00 45.35 3.02
2102 2127 2.033675 TGATTAATGAGGCGCATGCAAG 59.966 45.455 19.57 3.00 45.35 4.01
2103 2128 2.022934 TGATTAATGAGGCGCATGCAA 58.977 42.857 19.57 1.51 45.35 4.08
2104 2129 1.677942 TGATTAATGAGGCGCATGCA 58.322 45.000 19.57 3.78 45.35 3.96
2105 2130 2.388121 GTTGATTAATGAGGCGCATGC 58.612 47.619 10.83 7.91 37.28 4.06
2106 2131 2.358582 TGGTTGATTAATGAGGCGCATG 59.641 45.455 10.83 0.00 37.28 4.06
2107 2132 2.653726 TGGTTGATTAATGAGGCGCAT 58.346 42.857 10.83 0.00 39.43 4.73
2108 2133 2.121291 TGGTTGATTAATGAGGCGCA 57.879 45.000 10.83 0.00 0.00 6.09
2109 2134 3.502191 TTTGGTTGATTAATGAGGCGC 57.498 42.857 0.00 0.00 0.00 6.53
2110 2135 4.157656 TCCTTTTGGTTGATTAATGAGGCG 59.842 41.667 0.00 0.00 41.38 5.52
2111 2136 5.185828 ACTCCTTTTGGTTGATTAATGAGGC 59.814 40.000 0.00 0.00 41.38 4.70
2112 2137 6.209391 ACACTCCTTTTGGTTGATTAATGAGG 59.791 38.462 0.00 0.00 41.38 3.86
2113 2138 7.040478 TCACACTCCTTTTGGTTGATTAATGAG 60.040 37.037 0.00 0.00 41.38 2.90
2114 2139 6.775142 TCACACTCCTTTTGGTTGATTAATGA 59.225 34.615 0.00 0.00 41.38 2.57
2115 2140 6.980593 TCACACTCCTTTTGGTTGATTAATG 58.019 36.000 0.00 0.00 41.38 1.90
2116 2141 6.294731 GCTCACACTCCTTTTGGTTGATTAAT 60.295 38.462 0.00 0.00 41.38 1.40
2117 2142 5.009610 GCTCACACTCCTTTTGGTTGATTAA 59.990 40.000 0.00 0.00 41.38 1.40
2118 2143 4.518970 GCTCACACTCCTTTTGGTTGATTA 59.481 41.667 0.00 0.00 41.38 1.75
2119 2144 3.319122 GCTCACACTCCTTTTGGTTGATT 59.681 43.478 0.00 0.00 41.38 2.57
2120 2145 2.887152 GCTCACACTCCTTTTGGTTGAT 59.113 45.455 0.00 0.00 41.38 2.57
2121 2146 2.297701 GCTCACACTCCTTTTGGTTGA 58.702 47.619 0.00 0.00 41.38 3.18
2122 2147 2.023673 TGCTCACACTCCTTTTGGTTG 58.976 47.619 0.00 0.00 41.38 3.77
2123 2148 2.435372 TGCTCACACTCCTTTTGGTT 57.565 45.000 0.00 0.00 41.38 3.67
2124 2149 2.624838 CAATGCTCACACTCCTTTTGGT 59.375 45.455 0.00 0.00 41.38 3.67
2125 2150 2.029649 CCAATGCTCACACTCCTTTTGG 60.030 50.000 0.00 0.00 42.21 3.28
2126 2151 2.886523 TCCAATGCTCACACTCCTTTTG 59.113 45.455 0.00 0.00 0.00 2.44
2127 2152 3.228188 TCCAATGCTCACACTCCTTTT 57.772 42.857 0.00 0.00 0.00 2.27
2128 2153 2.957402 TCCAATGCTCACACTCCTTT 57.043 45.000 0.00 0.00 0.00 3.11
2129 2154 3.087031 CAATCCAATGCTCACACTCCTT 58.913 45.455 0.00 0.00 0.00 3.36
2130 2155 2.040813 ACAATCCAATGCTCACACTCCT 59.959 45.455 0.00 0.00 0.00 3.69
2131 2156 2.440409 ACAATCCAATGCTCACACTCC 58.560 47.619 0.00 0.00 0.00 3.85
2132 2157 3.254166 ACAACAATCCAATGCTCACACTC 59.746 43.478 0.00 0.00 0.00 3.51
2133 2158 3.225104 ACAACAATCCAATGCTCACACT 58.775 40.909 0.00 0.00 0.00 3.55
2134 2159 3.648339 ACAACAATCCAATGCTCACAC 57.352 42.857 0.00 0.00 0.00 3.82
2135 2160 3.758023 CCTACAACAATCCAATGCTCACA 59.242 43.478 0.00 0.00 0.00 3.58
2136 2161 3.758554 ACCTACAACAATCCAATGCTCAC 59.241 43.478 0.00 0.00 0.00 3.51
2137 2162 3.758023 CACCTACAACAATCCAATGCTCA 59.242 43.478 0.00 0.00 0.00 4.26
2138 2163 3.129287 CCACCTACAACAATCCAATGCTC 59.871 47.826 0.00 0.00 0.00 4.26
2139 2164 3.091545 CCACCTACAACAATCCAATGCT 58.908 45.455 0.00 0.00 0.00 3.79
2140 2165 2.166254 CCCACCTACAACAATCCAATGC 59.834 50.000 0.00 0.00 0.00 3.56
2141 2166 3.443681 GTCCCACCTACAACAATCCAATG 59.556 47.826 0.00 0.00 0.00 2.82
2142 2167 3.075283 TGTCCCACCTACAACAATCCAAT 59.925 43.478 0.00 0.00 0.00 3.16
2143 2168 2.443632 TGTCCCACCTACAACAATCCAA 59.556 45.455 0.00 0.00 0.00 3.53
2144 2169 2.058705 TGTCCCACCTACAACAATCCA 58.941 47.619 0.00 0.00 0.00 3.41
2145 2170 2.871096 TGTCCCACCTACAACAATCC 57.129 50.000 0.00 0.00 0.00 3.01
2146 2171 6.827586 TTTTATGTCCCACCTACAACAATC 57.172 37.500 0.00 0.00 0.00 2.67
2147 2172 7.790782 ATTTTTATGTCCCACCTACAACAAT 57.209 32.000 0.00 0.00 0.00 2.71
2148 2173 8.744652 CATATTTTTATGTCCCACCTACAACAA 58.255 33.333 0.00 0.00 0.00 2.83
2149 2174 7.147983 GCATATTTTTATGTCCCACCTACAACA 60.148 37.037 0.00 0.00 0.00 3.33
2150 2175 7.147983 TGCATATTTTTATGTCCCACCTACAAC 60.148 37.037 0.00 0.00 0.00 3.32
2151 2176 6.892456 TGCATATTTTTATGTCCCACCTACAA 59.108 34.615 0.00 0.00 0.00 2.41
2152 2177 6.427441 TGCATATTTTTATGTCCCACCTACA 58.573 36.000 0.00 0.00 0.00 2.74
2153 2178 6.952773 TGCATATTTTTATGTCCCACCTAC 57.047 37.500 0.00 0.00 0.00 3.18
2154 2179 9.647918 TTAATGCATATTTTTATGTCCCACCTA 57.352 29.630 0.00 0.00 0.00 3.08
2155 2180 8.546083 TTAATGCATATTTTTATGTCCCACCT 57.454 30.769 0.00 0.00 0.00 4.00
2156 2181 9.777297 AATTAATGCATATTTTTATGTCCCACC 57.223 29.630 0.00 0.00 0.00 4.61
2172 2197 9.515020 CCTTGTTTGTCGTATTAATTAATGCAT 57.485 29.630 21.41 0.00 0.00 3.96
2173 2198 8.731605 TCCTTGTTTGTCGTATTAATTAATGCA 58.268 29.630 21.41 12.24 0.00 3.96
2174 2199 9.221775 CTCCTTGTTTGTCGTATTAATTAATGC 57.778 33.333 18.98 16.57 0.00 3.56
2177 2202 9.491675 TGTCTCCTTGTTTGTCGTATTAATTAA 57.508 29.630 0.00 0.00 0.00 1.40
2178 2203 9.491675 TTGTCTCCTTGTTTGTCGTATTAATTA 57.508 29.630 0.00 0.00 0.00 1.40
2179 2204 7.972832 TGTCTCCTTGTTTGTCGTATTAATT 57.027 32.000 0.00 0.00 0.00 1.40
2180 2205 7.094933 GGTTGTCTCCTTGTTTGTCGTATTAAT 60.095 37.037 0.00 0.00 0.00 1.40
2181 2206 6.203338 GGTTGTCTCCTTGTTTGTCGTATTAA 59.797 38.462 0.00 0.00 0.00 1.40
2182 2207 5.697633 GGTTGTCTCCTTGTTTGTCGTATTA 59.302 40.000 0.00 0.00 0.00 0.98
2183 2208 4.514066 GGTTGTCTCCTTGTTTGTCGTATT 59.486 41.667 0.00 0.00 0.00 1.89
2184 2209 4.062991 GGTTGTCTCCTTGTTTGTCGTAT 58.937 43.478 0.00 0.00 0.00 3.06
2185 2210 3.133362 AGGTTGTCTCCTTGTTTGTCGTA 59.867 43.478 0.00 0.00 33.52 3.43
2186 2211 2.093128 AGGTTGTCTCCTTGTTTGTCGT 60.093 45.455 0.00 0.00 33.52 4.34
2187 2212 2.561569 AGGTTGTCTCCTTGTTTGTCG 58.438 47.619 0.00 0.00 33.52 4.35
2188 2213 3.498777 GCTAGGTTGTCTCCTTGTTTGTC 59.501 47.826 0.00 0.00 38.86 3.18
2189 2214 3.136626 AGCTAGGTTGTCTCCTTGTTTGT 59.863 43.478 0.00 0.00 38.86 2.83
2190 2215 3.744660 AGCTAGGTTGTCTCCTTGTTTG 58.255 45.455 0.00 0.00 38.86 2.93
2191 2216 4.137543 CAAGCTAGGTTGTCTCCTTGTTT 58.862 43.478 23.52 0.00 38.86 2.83
2192 2217 3.744660 CAAGCTAGGTTGTCTCCTTGTT 58.255 45.455 23.52 0.00 38.86 2.83
2193 2218 2.551071 GCAAGCTAGGTTGTCTCCTTGT 60.551 50.000 29.71 0.00 37.32 3.16
2194 2219 2.079925 GCAAGCTAGGTTGTCTCCTTG 58.920 52.381 29.71 14.99 38.86 3.61
2195 2220 1.699634 TGCAAGCTAGGTTGTCTCCTT 59.300 47.619 29.71 3.16 38.86 3.36
2196 2221 1.352083 TGCAAGCTAGGTTGTCTCCT 58.648 50.000 29.71 0.00 41.20 3.69
2197 2222 2.185004 TTGCAAGCTAGGTTGTCTCC 57.815 50.000 29.71 16.87 0.00 3.71
2198 2223 7.281100 AGTTAATATTGCAAGCTAGGTTGTCTC 59.719 37.037 29.71 17.17 0.00 3.36
2199 2224 7.112779 AGTTAATATTGCAAGCTAGGTTGTCT 58.887 34.615 29.71 18.93 0.00 3.41
2200 2225 7.321745 AGTTAATATTGCAAGCTAGGTTGTC 57.678 36.000 29.71 22.85 0.00 3.18
2201 2226 7.703058 AAGTTAATATTGCAAGCTAGGTTGT 57.297 32.000 29.71 16.52 0.00 3.32
2202 2227 9.722056 CTTAAGTTAATATTGCAAGCTAGGTTG 57.278 33.333 26.61 26.61 0.00 3.77
2203 2228 8.406297 GCTTAAGTTAATATTGCAAGCTAGGTT 58.594 33.333 4.94 0.12 35.27 3.50
2204 2229 7.556275 TGCTTAAGTTAATATTGCAAGCTAGGT 59.444 33.333 4.94 0.00 38.15 3.08
2205 2230 7.857885 GTGCTTAAGTTAATATTGCAAGCTAGG 59.142 37.037 4.94 0.00 38.15 3.02
2206 2231 8.397906 TGTGCTTAAGTTAATATTGCAAGCTAG 58.602 33.333 4.94 0.00 38.15 3.42
2207 2232 8.181573 GTGTGCTTAAGTTAATATTGCAAGCTA 58.818 33.333 4.94 0.00 38.15 3.32
2208 2233 7.029563 GTGTGCTTAAGTTAATATTGCAAGCT 58.970 34.615 4.94 0.00 38.15 3.74
2209 2234 6.806249 TGTGTGCTTAAGTTAATATTGCAAGC 59.194 34.615 4.94 0.00 37.89 4.01
2210 2235 8.915871 ATGTGTGCTTAAGTTAATATTGCAAG 57.084 30.769 4.94 0.00 0.00 4.01
2211 2236 9.703892 AAATGTGTGCTTAAGTTAATATTGCAA 57.296 25.926 0.00 0.00 0.00 4.08
2219 2244 9.026074 GCAAAAGTAAATGTGTGCTTAAGTTAA 57.974 29.630 4.02 0.00 0.00 2.01
2220 2245 7.650104 GGCAAAAGTAAATGTGTGCTTAAGTTA 59.350 33.333 4.02 0.00 32.61 2.24
2221 2246 6.478673 GGCAAAAGTAAATGTGTGCTTAAGTT 59.521 34.615 4.02 0.00 32.61 2.66
2222 2247 5.983118 GGCAAAAGTAAATGTGTGCTTAAGT 59.017 36.000 4.02 0.00 32.61 2.24
2223 2248 6.215845 AGGCAAAAGTAAATGTGTGCTTAAG 58.784 36.000 0.00 0.00 32.61 1.85
2224 2249 6.155475 AGGCAAAAGTAAATGTGTGCTTAA 57.845 33.333 0.00 0.00 32.61 1.85
2225 2250 5.782893 AGGCAAAAGTAAATGTGTGCTTA 57.217 34.783 0.00 0.00 32.61 3.09
2226 2251 4.670896 AGGCAAAAGTAAATGTGTGCTT 57.329 36.364 0.00 0.00 32.61 3.91
2227 2252 4.370917 CAAGGCAAAAGTAAATGTGTGCT 58.629 39.130 0.00 0.00 32.61 4.40
2228 2253 3.494251 CCAAGGCAAAAGTAAATGTGTGC 59.506 43.478 0.00 0.00 0.00 4.57
2229 2254 4.692228 ACCAAGGCAAAAGTAAATGTGTG 58.308 39.130 0.00 0.00 0.00 3.82
2230 2255 5.221362 GGTACCAAGGCAAAAGTAAATGTGT 60.221 40.000 7.15 0.00 0.00 3.72
2231 2256 5.010617 AGGTACCAAGGCAAAAGTAAATGTG 59.989 40.000 15.94 0.00 0.00 3.21
2232 2257 5.010617 CAGGTACCAAGGCAAAAGTAAATGT 59.989 40.000 15.94 0.00 0.00 2.71
2233 2258 5.010617 ACAGGTACCAAGGCAAAAGTAAATG 59.989 40.000 15.94 0.00 0.00 2.32
2234 2259 5.144832 ACAGGTACCAAGGCAAAAGTAAAT 58.855 37.500 15.94 0.00 0.00 1.40
2235 2260 4.538738 ACAGGTACCAAGGCAAAAGTAAA 58.461 39.130 15.94 0.00 0.00 2.01
2236 2261 4.173290 ACAGGTACCAAGGCAAAAGTAA 57.827 40.909 15.94 0.00 0.00 2.24
2237 2262 3.868619 ACAGGTACCAAGGCAAAAGTA 57.131 42.857 15.94 0.00 0.00 2.24
2238 2263 2.748209 ACAGGTACCAAGGCAAAAGT 57.252 45.000 15.94 0.00 0.00 2.66
2239 2264 6.377146 ACATATTACAGGTACCAAGGCAAAAG 59.623 38.462 15.94 0.00 0.00 2.27
2240 2265 6.151985 CACATATTACAGGTACCAAGGCAAAA 59.848 38.462 15.94 0.00 0.00 2.44
2241 2266 5.650266 CACATATTACAGGTACCAAGGCAAA 59.350 40.000 15.94 3.50 0.00 3.68
2242 2267 5.189928 CACATATTACAGGTACCAAGGCAA 58.810 41.667 15.94 5.53 0.00 4.52
2243 2268 4.226394 ACACATATTACAGGTACCAAGGCA 59.774 41.667 15.94 0.00 0.00 4.75
2244 2269 4.777463 ACACATATTACAGGTACCAAGGC 58.223 43.478 15.94 0.00 0.00 4.35
2245 2270 6.657541 ACAAACACATATTACAGGTACCAAGG 59.342 38.462 15.94 5.66 0.00 3.61
2246 2271 7.389330 TCACAAACACATATTACAGGTACCAAG 59.611 37.037 15.94 8.83 0.00 3.61
2247 2272 7.173562 GTCACAAACACATATTACAGGTACCAA 59.826 37.037 15.94 0.00 0.00 3.67
2248 2273 6.651643 GTCACAAACACATATTACAGGTACCA 59.348 38.462 15.94 0.00 0.00 3.25
2249 2274 6.093082 GGTCACAAACACATATTACAGGTACC 59.907 42.308 2.73 2.73 0.00 3.34
2250 2275 6.877322 AGGTCACAAACACATATTACAGGTAC 59.123 38.462 0.00 0.00 0.00 3.34
2251 2276 7.011499 AGGTCACAAACACATATTACAGGTA 57.989 36.000 0.00 0.00 0.00 3.08
2252 2277 5.876357 AGGTCACAAACACATATTACAGGT 58.124 37.500 0.00 0.00 0.00 4.00
2253 2278 6.206634 ACAAGGTCACAAACACATATTACAGG 59.793 38.462 0.00 0.00 0.00 4.00
2254 2279 7.202016 ACAAGGTCACAAACACATATTACAG 57.798 36.000 0.00 0.00 0.00 2.74
2255 2280 8.856153 ATACAAGGTCACAAACACATATTACA 57.144 30.769 0.00 0.00 0.00 2.41
2282 2307 9.628500 GTAATAACAGATACTCCCTCCATTTTT 57.372 33.333 0.00 0.00 0.00 1.94
2283 2308 9.004231 AGTAATAACAGATACTCCCTCCATTTT 57.996 33.333 0.00 0.00 0.00 1.82
2284 2309 8.568617 AGTAATAACAGATACTCCCTCCATTT 57.431 34.615 0.00 0.00 0.00 2.32
2285 2310 8.432805 CAAGTAATAACAGATACTCCCTCCATT 58.567 37.037 0.00 0.00 31.31 3.16
2286 2311 7.789831 TCAAGTAATAACAGATACTCCCTCCAT 59.210 37.037 0.00 0.00 31.31 3.41
2287 2312 7.130099 TCAAGTAATAACAGATACTCCCTCCA 58.870 38.462 0.00 0.00 31.31 3.86
2288 2313 7.598759 TCAAGTAATAACAGATACTCCCTCC 57.401 40.000 0.00 0.00 31.31 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.