Multiple sequence alignment - TraesCS4D01G110200
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS4D01G110200
chr4D
100.000
3323
0
0
1
3323
89931986
89928664
0.000000e+00
6137.0
1
TraesCS4D01G110200
chr4A
96.741
2639
60
8
695
3323
502358236
502355614
0.000000e+00
4373.0
2
TraesCS4D01G110200
chr4A
92.878
337
23
1
360
695
502358602
502358266
3.850000e-134
488.0
3
TraesCS4D01G110200
chr4B
93.403
2880
103
34
360
3196
126730862
126728027
0.000000e+00
4185.0
4
TraesCS4D01G110200
chr4B
95.789
95
3
1
3229
3323
126728030
126727937
5.740000e-33
152.0
5
TraesCS4D01G110200
chr4B
93.103
58
4
0
94
151
126730941
126730884
5.910000e-13
86.1
6
TraesCS4D01G110200
chr1D
85.369
1613
184
26
832
2400
487953461
487951857
0.000000e+00
1624.0
7
TraesCS4D01G110200
chr1A
85.357
1598
188
21
832
2400
586954261
586952681
0.000000e+00
1613.0
8
TraesCS4D01G110200
chr1B
85.294
1598
190
24
832
2400
679749437
679747856
0.000000e+00
1607.0
9
TraesCS4D01G110200
chr7D
98.113
212
4
0
149
360
29555515
29555726
1.460000e-98
370.0
10
TraesCS4D01G110200
chr2D
98.086
209
3
1
152
359
449513509
449513301
2.440000e-96
363.0
11
TraesCS4D01G110200
chr5D
97.183
213
3
3
149
359
537643098
537643309
1.130000e-94
357.0
12
TraesCS4D01G110200
chr3D
96.714
213
5
2
148
359
481706724
481706513
1.470000e-93
353.0
13
TraesCS4D01G110200
chr3A
96.190
210
6
1
150
359
123703753
123703960
3.170000e-90
342.0
14
TraesCS4D01G110200
chr3A
95.755
212
6
2
149
359
651189514
651189305
4.110000e-89
339.0
15
TraesCS4D01G110200
chr3A
96.154
208
5
2
152
359
184272622
184272418
1.480000e-88
337.0
16
TraesCS4D01G110200
chr2A
95.327
214
6
2
148
359
35678506
35678295
1.480000e-88
337.0
17
TraesCS4D01G110200
chr6D
93.274
223
13
2
139
360
46938922
46939143
8.890000e-86
327.0
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS4D01G110200
chr4D
89928664
89931986
3322
True
6137.000000
6137
100.000000
1
3323
1
chr4D.!!$R1
3322
1
TraesCS4D01G110200
chr4A
502355614
502358602
2988
True
2430.500000
4373
94.809500
360
3323
2
chr4A.!!$R1
2963
2
TraesCS4D01G110200
chr4B
126727937
126730941
3004
True
1474.366667
4185
94.098333
94
3323
3
chr4B.!!$R1
3229
3
TraesCS4D01G110200
chr1D
487951857
487953461
1604
True
1624.000000
1624
85.369000
832
2400
1
chr1D.!!$R1
1568
4
TraesCS4D01G110200
chr1A
586952681
586954261
1580
True
1613.000000
1613
85.357000
832
2400
1
chr1A.!!$R1
1568
5
TraesCS4D01G110200
chr1B
679747856
679749437
1581
True
1607.000000
1607
85.294000
832
2400
1
chr1B.!!$R1
1568
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
207
208
0.032117
TGAGACCCGTCCTGATGGAT
60.032
55.0
6.98
0.00
45.29
3.41
F
222
223
0.036022
TGGATGACACGTGGCATTCA
59.964
50.0
36.64
36.64
46.54
2.57
F
312
313
0.036022
TGAATGCCACGTGTCATCCA
59.964
50.0
13.12
2.86
0.00
3.41
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
1090
1147
2.880890
GCTGTTTTCCTGAGCTTGAAGA
59.119
45.455
0.00
0.0
0.00
2.87
R
2250
2337
2.846193
AGCTGAAGTTCCAAACGCTTA
58.154
42.857
0.00
0.0
36.23
3.09
R
2344
2442
9.243105
ACTTTCATACTTACCATATTGCAAACT
57.757
29.630
1.71
0.0
0.00
2.66
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
47
48
4.873129
CGGACAGCGGATCGGGTG
62.873
72.222
25.48
25.48
41.07
4.61
48
49
4.530857
GGACAGCGGATCGGGTGG
62.531
72.222
28.88
15.44
39.65
4.61
49
50
3.771160
GACAGCGGATCGGGTGGT
61.771
66.667
28.88
17.90
39.65
4.16
50
51
3.310860
GACAGCGGATCGGGTGGTT
62.311
63.158
28.88
14.38
39.65
3.67
51
52
2.819595
CAGCGGATCGGGTGGTTG
60.820
66.667
21.12
0.00
0.00
3.77
52
53
4.096003
AGCGGATCGGGTGGTTGG
62.096
66.667
3.96
0.00
0.00
3.77
54
55
4.402528
CGGATCGGGTGGTTGGCA
62.403
66.667
0.00
0.00
0.00
4.92
55
56
2.438434
GGATCGGGTGGTTGGCAG
60.438
66.667
0.00
0.00
0.00
4.85
56
57
2.351276
GATCGGGTGGTTGGCAGT
59.649
61.111
0.00
0.00
0.00
4.40
57
58
2.034066
ATCGGGTGGTTGGCAGTG
59.966
61.111
0.00
0.00
0.00
3.66
58
59
4.947147
TCGGGTGGTTGGCAGTGC
62.947
66.667
6.55
6.55
0.00
4.40
60
61
4.947147
GGGTGGTTGGCAGTGCGA
62.947
66.667
9.45
1.21
0.00
5.10
61
62
3.660111
GGTGGTTGGCAGTGCGAC
61.660
66.667
9.45
10.23
0.00
5.19
62
63
4.012895
GTGGTTGGCAGTGCGACG
62.013
66.667
9.45
0.00
0.00
5.12
71
72
4.796231
AGTGCGACGGCGATGGTC
62.796
66.667
18.90
0.00
44.10
4.02
81
82
3.879682
CGATGGTCGTCGGCGGTA
61.880
66.667
10.62
0.00
37.94
4.02
82
83
2.025727
GATGGTCGTCGGCGGTAG
59.974
66.667
10.62
0.00
38.89
3.18
83
84
2.753043
ATGGTCGTCGGCGGTAGT
60.753
61.111
10.62
0.00
38.89
2.73
84
85
2.659017
GATGGTCGTCGGCGGTAGTC
62.659
65.000
10.62
0.00
38.89
2.59
85
86
3.130160
GGTCGTCGGCGGTAGTCT
61.130
66.667
10.62
0.00
38.89
3.24
86
87
2.099831
GTCGTCGGCGGTAGTCTG
59.900
66.667
10.62
0.00
38.89
3.51
87
88
3.129502
TCGTCGGCGGTAGTCTGG
61.130
66.667
10.62
0.00
38.89
3.86
88
89
4.189188
CGTCGGCGGTAGTCTGGG
62.189
72.222
7.21
0.00
0.00
4.45
89
90
3.834799
GTCGGCGGTAGTCTGGGG
61.835
72.222
7.21
0.00
0.00
4.96
90
91
4.371417
TCGGCGGTAGTCTGGGGT
62.371
66.667
7.21
0.00
0.00
4.95
91
92
4.143333
CGGCGGTAGTCTGGGGTG
62.143
72.222
0.00
0.00
0.00
4.61
92
93
3.782443
GGCGGTAGTCTGGGGTGG
61.782
72.222
0.00
0.00
0.00
4.61
99
100
1.335132
TAGTCTGGGGTGGCGGATTC
61.335
60.000
0.00
0.00
0.00
2.52
111
112
3.810896
GGATTCCGGTTGCGGTGC
61.811
66.667
0.00
0.00
0.00
5.01
151
152
1.927371
GGGAATGTTTAGGGGAAGGGA
59.073
52.381
0.00
0.00
0.00
4.20
152
153
2.313643
GGGAATGTTTAGGGGAAGGGAA
59.686
50.000
0.00
0.00
0.00
3.97
154
155
4.422057
GGAATGTTTAGGGGAAGGGAAAA
58.578
43.478
0.00
0.00
0.00
2.29
155
156
4.841813
GGAATGTTTAGGGGAAGGGAAAAA
59.158
41.667
0.00
0.00
0.00
1.94
181
182
4.621269
AGACCAGGTCTCACGGTT
57.379
55.556
17.31
0.00
38.71
4.44
182
183
3.759865
AGACCAGGTCTCACGGTTA
57.240
52.632
17.31
0.00
38.71
2.85
183
184
1.546961
AGACCAGGTCTCACGGTTAG
58.453
55.000
17.31
0.00
38.71
2.34
184
185
0.108756
GACCAGGTCTCACGGTTAGC
60.109
60.000
12.94
0.00
31.63
3.09
185
186
0.830444
ACCAGGTCTCACGGTTAGCA
60.830
55.000
0.00
0.00
0.00
3.49
186
187
0.108615
CCAGGTCTCACGGTTAGCAG
60.109
60.000
0.00
0.00
0.00
4.24
187
188
0.108615
CAGGTCTCACGGTTAGCAGG
60.109
60.000
0.00
0.00
0.00
4.85
188
189
0.542232
AGGTCTCACGGTTAGCAGGT
60.542
55.000
0.00
0.00
0.00
4.00
189
190
0.389948
GGTCTCACGGTTAGCAGGTG
60.390
60.000
0.00
0.00
0.00
4.00
190
191
0.601558
GTCTCACGGTTAGCAGGTGA
59.398
55.000
3.41
3.41
38.29
4.02
192
193
3.045518
TCACGGTTAGCAGGTGAGA
57.954
52.632
0.00
0.00
35.89
3.27
193
194
0.601558
TCACGGTTAGCAGGTGAGAC
59.398
55.000
0.00
0.00
35.89
3.36
194
195
0.389948
CACGGTTAGCAGGTGAGACC
60.390
60.000
0.00
0.00
38.99
3.85
195
196
1.218316
CGGTTAGCAGGTGAGACCC
59.782
63.158
0.00
0.00
39.75
4.46
196
197
1.218316
GGTTAGCAGGTGAGACCCG
59.782
63.158
0.00
0.00
39.75
5.28
197
198
1.542187
GGTTAGCAGGTGAGACCCGT
61.542
60.000
0.00
0.00
39.75
5.28
198
199
0.108756
GTTAGCAGGTGAGACCCGTC
60.109
60.000
0.00
0.00
39.75
4.79
199
200
1.255667
TTAGCAGGTGAGACCCGTCC
61.256
60.000
0.00
0.00
39.75
4.79
200
201
2.151307
TAGCAGGTGAGACCCGTCCT
62.151
60.000
0.00
0.00
39.75
3.85
201
202
2.973899
CAGGTGAGACCCGTCCTG
59.026
66.667
0.00
0.00
39.75
3.86
202
203
2.851801
AGGTGAGACCCGTCCTGA
59.148
61.111
0.00
0.00
39.75
3.86
203
204
1.388531
AGGTGAGACCCGTCCTGAT
59.611
57.895
0.00
0.00
39.75
2.90
204
205
0.972983
AGGTGAGACCCGTCCTGATG
60.973
60.000
0.00
0.00
39.75
3.07
205
206
1.517832
GTGAGACCCGTCCTGATGG
59.482
63.158
0.00
0.00
37.23
3.51
206
207
0.970937
GTGAGACCCGTCCTGATGGA
60.971
60.000
6.98
0.00
39.90
3.41
207
208
0.032117
TGAGACCCGTCCTGATGGAT
60.032
55.000
6.98
0.00
45.29
3.41
208
209
0.390860
GAGACCCGTCCTGATGGATG
59.609
60.000
6.98
0.00
45.29
3.51
215
216
1.645034
GTCCTGATGGATGACACGTG
58.355
55.000
15.48
15.48
45.29
4.49
216
217
0.536724
TCCTGATGGATGACACGTGG
59.463
55.000
21.57
1.66
37.46
4.94
217
218
1.091771
CCTGATGGATGACACGTGGC
61.092
60.000
21.57
19.24
34.57
5.01
218
219
0.391528
CTGATGGATGACACGTGGCA
60.392
55.000
29.28
29.28
37.54
4.92
220
221
1.339920
TGATGGATGACACGTGGCATT
60.340
47.619
36.07
22.11
45.42
3.56
221
222
1.331756
GATGGATGACACGTGGCATTC
59.668
52.381
36.07
34.16
45.42
2.67
222
223
0.036022
TGGATGACACGTGGCATTCA
59.964
50.000
36.64
36.64
46.54
2.57
223
224
0.447801
GGATGACACGTGGCATTCAC
59.552
55.000
36.07
24.74
45.42
3.18
224
225
1.155889
GATGACACGTGGCATTCACA
58.844
50.000
36.07
9.07
45.42
3.58
225
226
1.535028
GATGACACGTGGCATTCACAA
59.465
47.619
36.07
8.22
45.42
3.33
226
227
1.383523
TGACACGTGGCATTCACAAA
58.616
45.000
23.03
0.00
46.36
2.83
227
228
1.952990
TGACACGTGGCATTCACAAAT
59.047
42.857
23.03
0.00
46.36
2.32
228
229
2.031245
TGACACGTGGCATTCACAAATC
60.031
45.455
23.03
3.54
46.36
2.17
229
230
2.226437
GACACGTGGCATTCACAAATCT
59.774
45.455
18.77
0.00
46.36
2.40
230
231
2.226437
ACACGTGGCATTCACAAATCTC
59.774
45.455
21.57
0.00
46.36
2.75
231
232
2.226200
CACGTGGCATTCACAAATCTCA
59.774
45.455
7.95
0.00
46.36
3.27
232
233
2.884012
ACGTGGCATTCACAAATCTCAA
59.116
40.909
0.00
0.00
46.36
3.02
233
234
3.317711
ACGTGGCATTCACAAATCTCAAA
59.682
39.130
0.00
0.00
46.36
2.69
234
235
3.916172
CGTGGCATTCACAAATCTCAAAG
59.084
43.478
0.00
0.00
46.36
2.77
235
236
3.676646
GTGGCATTCACAAATCTCAAAGC
59.323
43.478
0.00
0.00
45.39
3.51
236
237
3.321396
TGGCATTCACAAATCTCAAAGCA
59.679
39.130
0.00
0.00
0.00
3.91
237
238
4.020928
TGGCATTCACAAATCTCAAAGCAT
60.021
37.500
0.00
0.00
0.00
3.79
238
239
4.565564
GGCATTCACAAATCTCAAAGCATC
59.434
41.667
0.00
0.00
0.00
3.91
239
240
5.408356
GCATTCACAAATCTCAAAGCATCT
58.592
37.500
0.00
0.00
0.00
2.90
240
241
6.405065
GGCATTCACAAATCTCAAAGCATCTA
60.405
38.462
0.00
0.00
0.00
1.98
241
242
7.031372
GCATTCACAAATCTCAAAGCATCTAA
58.969
34.615
0.00
0.00
0.00
2.10
242
243
7.705325
GCATTCACAAATCTCAAAGCATCTAAT
59.295
33.333
0.00
0.00
0.00
1.73
243
244
9.234384
CATTCACAAATCTCAAAGCATCTAATC
57.766
33.333
0.00
0.00
0.00
1.75
244
245
8.571461
TTCACAAATCTCAAAGCATCTAATCT
57.429
30.769
0.00
0.00
0.00
2.40
245
246
8.206325
TCACAAATCTCAAAGCATCTAATCTC
57.794
34.615
0.00
0.00
0.00
2.75
246
247
8.045507
TCACAAATCTCAAAGCATCTAATCTCT
58.954
33.333
0.00
0.00
0.00
3.10
247
248
8.336806
CACAAATCTCAAAGCATCTAATCTCTC
58.663
37.037
0.00
0.00
0.00
3.20
248
249
7.498570
ACAAATCTCAAAGCATCTAATCTCTCC
59.501
37.037
0.00
0.00
0.00
3.71
249
250
5.543507
TCTCAAAGCATCTAATCTCTCCC
57.456
43.478
0.00
0.00
0.00
4.30
250
251
4.346418
TCTCAAAGCATCTAATCTCTCCCC
59.654
45.833
0.00
0.00
0.00
4.81
251
252
3.392616
TCAAAGCATCTAATCTCTCCCCC
59.607
47.826
0.00
0.00
0.00
5.40
266
267
3.288099
CCCCCTGATTTCAAGTGGG
57.712
57.895
0.00
0.00
37.68
4.61
268
269
3.288099
CCCTGATTTCAAGTGGGGG
57.712
57.895
0.00
0.00
34.46
5.40
283
284
3.672503
GGGGTGGGGTGGATGCTT
61.673
66.667
0.00
0.00
0.00
3.91
284
285
2.445155
GGGTGGGGTGGATGCTTT
59.555
61.111
0.00
0.00
0.00
3.51
285
286
1.984026
GGGTGGGGTGGATGCTTTG
60.984
63.158
0.00
0.00
0.00
2.77
286
287
1.228862
GGTGGGGTGGATGCTTTGT
60.229
57.895
0.00
0.00
0.00
2.83
287
288
1.535204
GGTGGGGTGGATGCTTTGTG
61.535
60.000
0.00
0.00
0.00
3.33
288
289
0.539438
GTGGGGTGGATGCTTTGTGA
60.539
55.000
0.00
0.00
0.00
3.58
289
290
0.409092
TGGGGTGGATGCTTTGTGAT
59.591
50.000
0.00
0.00
0.00
3.06
290
291
1.203162
TGGGGTGGATGCTTTGTGATT
60.203
47.619
0.00
0.00
0.00
2.57
291
292
1.901833
GGGGTGGATGCTTTGTGATTT
59.098
47.619
0.00
0.00
0.00
2.17
292
293
2.354003
GGGGTGGATGCTTTGTGATTTG
60.354
50.000
0.00
0.00
0.00
2.32
293
294
2.299867
GGGTGGATGCTTTGTGATTTGT
59.700
45.455
0.00
0.00
0.00
2.83
294
295
3.319755
GGTGGATGCTTTGTGATTTGTG
58.680
45.455
0.00
0.00
0.00
3.33
295
296
3.005684
GGTGGATGCTTTGTGATTTGTGA
59.994
43.478
0.00
0.00
0.00
3.58
296
297
4.501229
GGTGGATGCTTTGTGATTTGTGAA
60.501
41.667
0.00
0.00
0.00
3.18
297
298
5.232463
GTGGATGCTTTGTGATTTGTGAAT
58.768
37.500
0.00
0.00
0.00
2.57
298
299
5.119588
GTGGATGCTTTGTGATTTGTGAATG
59.880
40.000
0.00
0.00
0.00
2.67
299
300
4.092383
GGATGCTTTGTGATTTGTGAATGC
59.908
41.667
0.00
0.00
0.00
3.56
300
301
3.391965
TGCTTTGTGATTTGTGAATGCC
58.608
40.909
0.00
0.00
0.00
4.40
301
302
3.181468
TGCTTTGTGATTTGTGAATGCCA
60.181
39.130
0.00
0.00
0.00
4.92
302
303
3.184986
GCTTTGTGATTTGTGAATGCCAC
59.815
43.478
0.00
0.00
45.88
5.01
310
311
3.975992
GTGAATGCCACGTGTCATC
57.024
52.632
13.12
7.23
35.86
2.92
311
312
0.447801
GTGAATGCCACGTGTCATCC
59.552
55.000
13.12
0.00
35.86
3.51
312
313
0.036022
TGAATGCCACGTGTCATCCA
59.964
50.000
13.12
2.86
0.00
3.41
313
314
1.339920
TGAATGCCACGTGTCATCCAT
60.340
47.619
13.12
0.00
0.00
3.41
314
315
1.331756
GAATGCCACGTGTCATCCATC
59.668
52.381
13.12
3.25
0.00
3.51
315
316
0.252761
ATGCCACGTGTCATCCATCA
59.747
50.000
15.65
0.00
0.00
3.07
316
317
0.391528
TGCCACGTGTCATCCATCAG
60.392
55.000
15.65
0.00
0.00
2.90
317
318
1.091771
GCCACGTGTCATCCATCAGG
61.092
60.000
15.65
0.00
0.00
3.86
326
327
4.356979
TCCATCAGGACGGGTCTC
57.643
61.111
0.00
0.00
39.61
3.36
327
328
1.753078
TCCATCAGGACGGGTCTCG
60.753
63.158
0.00
0.00
39.61
4.04
328
329
2.105128
CATCAGGACGGGTCTCGC
59.895
66.667
0.00
0.00
43.89
5.03
329
330
3.518998
ATCAGGACGGGTCTCGCG
61.519
66.667
0.00
0.00
45.13
5.87
340
341
2.282251
TCTCGCGTGAGACCTGGT
60.282
61.111
24.28
0.00
46.25
4.00
341
342
2.179517
CTCGCGTGAGACCTGGTC
59.820
66.667
21.40
19.20
45.57
4.02
342
343
2.282251
TCGCGTGAGACCTGGTCT
60.282
61.111
28.70
28.70
46.42
3.85
355
356
6.882768
AGACCTGGTCTCATAGAATTCTTT
57.117
37.500
23.49
2.41
38.71
2.52
356
357
7.264294
AGACCTGGTCTCATAGAATTCTTTT
57.736
36.000
23.49
0.00
38.71
2.27
357
358
7.334858
AGACCTGGTCTCATAGAATTCTTTTC
58.665
38.462
23.49
0.00
38.71
2.29
358
359
6.418946
ACCTGGTCTCATAGAATTCTTTTCC
58.581
40.000
14.36
8.65
0.00
3.13
394
395
6.121590
TGATTATACGGGGTCCCTTAAAAAC
58.878
40.000
8.15
0.00
0.00
2.43
499
502
1.107945
TGATGCTCGACGATTACCCA
58.892
50.000
0.00
0.00
0.00
4.51
633
636
4.449743
CAGTGACAAATCCCTGCAAATTTG
59.550
41.667
14.03
14.03
44.60
2.32
635
638
4.448732
GTGACAAATCCCTGCAAATTTGAC
59.551
41.667
22.31
20.50
42.71
3.18
664
667
2.496871
CCTGATTGCCTAATTTGGTGCA
59.503
45.455
7.77
0.00
0.00
4.57
1113
1170
2.224606
TCAAGCTCAGGAAAACAGCTG
58.775
47.619
13.48
13.48
42.86
4.24
1230
1293
2.746277
GATCGCCACCACCACCAC
60.746
66.667
0.00
0.00
0.00
4.16
1290
1374
1.189752
TCAGTGATGAGGAGGAGCAC
58.810
55.000
0.00
0.00
0.00
4.40
1438
1525
4.113815
CTGGGGCGGATCAAGGCA
62.114
66.667
14.19
0.00
35.71
4.75
2104
2191
4.035675
GGAAGGACTTGACTTCACAACAAG
59.964
45.833
0.00
0.00
44.69
3.16
2131
2218
1.159285
TCAGAAACATCGCTTGCAGG
58.841
50.000
0.00
0.00
0.00
4.85
2362
2460
9.297037
AGAGTTTTAGTTTGCAATATGGTAAGT
57.703
29.630
0.00
0.00
0.00
2.24
2416
2514
1.446907
CTTCTGCTTGGTGCTACTGG
58.553
55.000
0.00
0.00
43.37
4.00
2507
2605
4.551702
TGTGGAGTATTACATGCACTGT
57.448
40.909
14.21
0.00
38.45
3.55
2660
2766
1.811965
GCTGTCATGCACATGGTGTTA
59.188
47.619
10.58
0.00
39.24
2.41
2673
2779
3.688694
TGGTGTTACTGGGTGATACAC
57.311
47.619
0.00
0.00
38.62
2.90
2822
2929
4.263462
TGACAGGCCACACTGAGAATTTAT
60.263
41.667
5.01
0.00
40.97
1.40
2915
3022
1.102154
TGGTGTCAGTTTGCCACTTG
58.898
50.000
0.00
0.00
30.92
3.16
2980
3087
8.100164
TGTATGAAATGGATGACTGTTCTTACA
58.900
33.333
0.00
0.00
36.91
2.41
3134
3241
8.762426
AGCTTACTCTAAGTTTAGTTTTGAACG
58.238
33.333
0.00
0.00
38.07
3.95
3219
3336
1.371635
GGTTGACATGTGCGTTGGC
60.372
57.895
1.15
0.00
40.52
4.52
3313
3430
2.620251
TCAAATGATAGACCGGCTGG
57.380
50.000
11.02
11.02
42.84
4.85
3314
3431
1.140852
TCAAATGATAGACCGGCTGGG
59.859
52.381
18.00
4.46
40.75
4.45
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
30
31
4.873129
CACCCGATCCGCTGTCCG
62.873
72.222
0.00
0.00
0.00
4.79
31
32
4.530857
CCACCCGATCCGCTGTCC
62.531
72.222
0.00
0.00
0.00
4.02
32
33
3.310860
AACCACCCGATCCGCTGTC
62.311
63.158
0.00
0.00
0.00
3.51
33
34
3.319198
AACCACCCGATCCGCTGT
61.319
61.111
0.00
0.00
0.00
4.40
34
35
2.819595
CAACCACCCGATCCGCTG
60.820
66.667
0.00
0.00
0.00
5.18
35
36
4.096003
CCAACCACCCGATCCGCT
62.096
66.667
0.00
0.00
0.00
5.52
37
38
4.402528
TGCCAACCACCCGATCCG
62.403
66.667
0.00
0.00
0.00
4.18
38
39
2.438434
CTGCCAACCACCCGATCC
60.438
66.667
0.00
0.00
0.00
3.36
39
40
2.040544
CACTGCCAACCACCCGATC
61.041
63.158
0.00
0.00
0.00
3.69
40
41
2.034066
CACTGCCAACCACCCGAT
59.966
61.111
0.00
0.00
0.00
4.18
41
42
4.947147
GCACTGCCAACCACCCGA
62.947
66.667
0.00
0.00
0.00
5.14
43
44
4.947147
TCGCACTGCCAACCACCC
62.947
66.667
0.00
0.00
0.00
4.61
44
45
3.660111
GTCGCACTGCCAACCACC
61.660
66.667
0.00
0.00
0.00
4.61
45
46
4.012895
CGTCGCACTGCCAACCAC
62.013
66.667
0.00
0.00
0.00
4.16
54
55
4.796231
GACCATCGCCGTCGCACT
62.796
66.667
0.00
0.00
35.26
4.40
64
65
3.802008
CTACCGCCGACGACCATCG
62.802
68.421
0.00
0.00
46.93
3.84
65
66
2.025727
CTACCGCCGACGACCATC
59.974
66.667
0.00
0.00
43.93
3.51
66
67
2.753043
ACTACCGCCGACGACCAT
60.753
61.111
0.00
0.00
43.93
3.55
67
68
3.434319
GACTACCGCCGACGACCA
61.434
66.667
0.00
0.00
43.93
4.02
68
69
3.130160
AGACTACCGCCGACGACC
61.130
66.667
0.00
0.00
43.93
4.79
69
70
2.099831
CAGACTACCGCCGACGAC
59.900
66.667
0.00
0.00
43.93
4.34
70
71
3.129502
CCAGACTACCGCCGACGA
61.130
66.667
0.00
0.00
43.93
4.20
71
72
4.189188
CCCAGACTACCGCCGACG
62.189
72.222
0.00
0.00
39.67
5.12
72
73
3.834799
CCCCAGACTACCGCCGAC
61.835
72.222
0.00
0.00
0.00
4.79
73
74
4.371417
ACCCCAGACTACCGCCGA
62.371
66.667
0.00
0.00
0.00
5.54
74
75
4.143333
CACCCCAGACTACCGCCG
62.143
72.222
0.00
0.00
0.00
6.46
75
76
3.782443
CCACCCCAGACTACCGCC
61.782
72.222
0.00
0.00
0.00
6.13
76
77
4.468689
GCCACCCCAGACTACCGC
62.469
72.222
0.00
0.00
0.00
5.68
77
78
4.143333
CGCCACCCCAGACTACCG
62.143
72.222
0.00
0.00
0.00
4.02
78
79
3.782443
CCGCCACCCCAGACTACC
61.782
72.222
0.00
0.00
0.00
3.18
79
80
1.623542
AATCCGCCACCCCAGACTAC
61.624
60.000
0.00
0.00
0.00
2.73
80
81
1.306654
AATCCGCCACCCCAGACTA
60.307
57.895
0.00
0.00
0.00
2.59
81
82
2.610859
AATCCGCCACCCCAGACT
60.611
61.111
0.00
0.00
0.00
3.24
82
83
2.124695
GAATCCGCCACCCCAGAC
60.125
66.667
0.00
0.00
0.00
3.51
83
84
3.407967
GGAATCCGCCACCCCAGA
61.408
66.667
0.00
0.00
0.00
3.86
84
85
4.856801
CGGAATCCGCCACCCCAG
62.857
72.222
9.39
0.00
41.17
4.45
87
88
4.419921
AACCGGAATCCGCCACCC
62.420
66.667
17.50
0.00
46.86
4.61
88
89
3.131478
CAACCGGAATCCGCCACC
61.131
66.667
17.50
0.00
46.86
4.61
89
90
3.810896
GCAACCGGAATCCGCCAC
61.811
66.667
17.50
1.15
46.86
5.01
109
110
4.908687
AACTGCCACGTCAGCGCA
62.909
61.111
11.47
0.64
42.83
6.09
111
112
0.796312
ATAAAACTGCCACGTCAGCG
59.204
50.000
4.28
1.76
44.93
5.18
164
165
1.546961
CTAACCGTGAGACCTGGTCT
58.453
55.000
28.70
28.70
46.42
3.85
165
166
0.108756
GCTAACCGTGAGACCTGGTC
60.109
60.000
19.20
19.20
34.11
4.02
166
167
0.830444
TGCTAACCGTGAGACCTGGT
60.830
55.000
0.00
0.00
37.68
4.00
167
168
0.108615
CTGCTAACCGTGAGACCTGG
60.109
60.000
0.00
0.00
0.00
4.45
168
169
0.108615
CCTGCTAACCGTGAGACCTG
60.109
60.000
0.00
0.00
0.00
4.00
172
173
3.045518
TCACCTGCTAACCGTGAGA
57.954
52.632
0.00
0.00
32.85
3.27
173
174
3.425578
CTCACCTGCTAACCGTGAG
57.574
57.895
2.35
2.35
45.33
3.51
174
175
0.601558
GTCTCACCTGCTAACCGTGA
59.398
55.000
0.00
0.00
35.34
4.35
175
176
0.389948
GGTCTCACCTGCTAACCGTG
60.390
60.000
0.00
0.00
34.73
4.94
176
177
1.542187
GGGTCTCACCTGCTAACCGT
61.542
60.000
0.00
0.00
38.64
4.83
177
178
1.218316
GGGTCTCACCTGCTAACCG
59.782
63.158
0.00
0.00
38.64
4.44
178
179
1.218316
CGGGTCTCACCTGCTAACC
59.782
63.158
0.00
0.00
37.90
2.85
179
180
4.913126
CGGGTCTCACCTGCTAAC
57.087
61.111
0.00
0.00
37.90
2.34
185
186
0.972983
CATCAGGACGGGTCTCACCT
60.973
60.000
0.00
0.00
38.64
4.00
186
187
1.517832
CATCAGGACGGGTCTCACC
59.482
63.158
0.00
0.00
37.60
4.02
187
188
0.970937
TCCATCAGGACGGGTCTCAC
60.971
60.000
0.00
0.00
39.61
3.51
188
189
1.386550
TCCATCAGGACGGGTCTCA
59.613
57.895
0.00
0.00
39.61
3.27
189
190
4.356979
TCCATCAGGACGGGTCTC
57.643
61.111
0.00
0.00
39.61
3.36
198
199
1.091771
GCCACGTGTCATCCATCAGG
61.092
60.000
15.65
0.00
0.00
3.86
199
200
0.391528
TGCCACGTGTCATCCATCAG
60.392
55.000
15.65
0.00
0.00
2.90
200
201
0.252761
ATGCCACGTGTCATCCATCA
59.747
50.000
15.65
0.00
0.00
3.07
201
202
1.331756
GAATGCCACGTGTCATCCATC
59.668
52.381
13.12
3.25
0.00
3.51
202
203
1.339920
TGAATGCCACGTGTCATCCAT
60.340
47.619
13.12
0.00
0.00
3.41
203
204
0.036022
TGAATGCCACGTGTCATCCA
59.964
50.000
13.12
2.86
0.00
3.41
204
205
0.447801
GTGAATGCCACGTGTCATCC
59.552
55.000
13.12
0.00
35.86
3.51
205
206
3.975992
GTGAATGCCACGTGTCATC
57.024
52.632
13.12
7.23
35.86
2.92
213
214
3.676646
GCTTTGAGATTTGTGAATGCCAC
59.323
43.478
0.00
0.00
45.88
5.01
214
215
3.321396
TGCTTTGAGATTTGTGAATGCCA
59.679
39.130
0.00
0.00
0.00
4.92
215
216
3.916761
TGCTTTGAGATTTGTGAATGCC
58.083
40.909
0.00
0.00
0.00
4.40
216
217
5.408356
AGATGCTTTGAGATTTGTGAATGC
58.592
37.500
0.00
0.00
0.00
3.56
217
218
9.234384
GATTAGATGCTTTGAGATTTGTGAATG
57.766
33.333
0.00
0.00
0.00
2.67
218
219
9.186837
AGATTAGATGCTTTGAGATTTGTGAAT
57.813
29.630
0.00
0.00
0.00
2.57
219
220
8.571461
AGATTAGATGCTTTGAGATTTGTGAA
57.429
30.769
0.00
0.00
0.00
3.18
220
221
8.045507
AGAGATTAGATGCTTTGAGATTTGTGA
58.954
33.333
0.00
0.00
0.00
3.58
221
222
8.211116
AGAGATTAGATGCTTTGAGATTTGTG
57.789
34.615
0.00
0.00
0.00
3.33
222
223
7.498570
GGAGAGATTAGATGCTTTGAGATTTGT
59.501
37.037
0.00
0.00
0.00
2.83
223
224
7.041235
GGGAGAGATTAGATGCTTTGAGATTTG
60.041
40.741
0.00
0.00
0.00
2.32
224
225
6.997476
GGGAGAGATTAGATGCTTTGAGATTT
59.003
38.462
0.00
0.00
0.00
2.17
225
226
6.465607
GGGGAGAGATTAGATGCTTTGAGATT
60.466
42.308
0.00
0.00
0.00
2.40
226
227
5.012975
GGGGAGAGATTAGATGCTTTGAGAT
59.987
44.000
0.00
0.00
0.00
2.75
227
228
4.346418
GGGGAGAGATTAGATGCTTTGAGA
59.654
45.833
0.00
0.00
0.00
3.27
228
229
4.504689
GGGGGAGAGATTAGATGCTTTGAG
60.505
50.000
0.00
0.00
0.00
3.02
229
230
3.392616
GGGGGAGAGATTAGATGCTTTGA
59.607
47.826
0.00
0.00
0.00
2.69
230
231
3.749226
GGGGGAGAGATTAGATGCTTTG
58.251
50.000
0.00
0.00
0.00
2.77
248
249
3.288099
CCCACTTGAAATCAGGGGG
57.712
57.895
6.84
6.84
45.21
5.40
250
251
3.288099
CCCCCACTTGAAATCAGGG
57.712
57.895
0.00
0.00
39.29
4.45
266
267
3.238197
AAAGCATCCACCCCACCCC
62.238
63.158
0.00
0.00
0.00
4.95
267
268
1.984026
CAAAGCATCCACCCCACCC
60.984
63.158
0.00
0.00
0.00
4.61
268
269
1.228862
ACAAAGCATCCACCCCACC
60.229
57.895
0.00
0.00
0.00
4.61
269
270
0.539438
TCACAAAGCATCCACCCCAC
60.539
55.000
0.00
0.00
0.00
4.61
270
271
0.409092
ATCACAAAGCATCCACCCCA
59.591
50.000
0.00
0.00
0.00
4.96
271
272
1.560505
AATCACAAAGCATCCACCCC
58.439
50.000
0.00
0.00
0.00
4.95
272
273
2.299867
ACAAATCACAAAGCATCCACCC
59.700
45.455
0.00
0.00
0.00
4.61
273
274
3.005684
TCACAAATCACAAAGCATCCACC
59.994
43.478
0.00
0.00
0.00
4.61
274
275
4.241590
TCACAAATCACAAAGCATCCAC
57.758
40.909
0.00
0.00
0.00
4.02
275
276
4.933505
TTCACAAATCACAAAGCATCCA
57.066
36.364
0.00
0.00
0.00
3.41
276
277
4.092383
GCATTCACAAATCACAAAGCATCC
59.908
41.667
0.00
0.00
0.00
3.51
277
278
4.092383
GGCATTCACAAATCACAAAGCATC
59.908
41.667
0.00
0.00
0.00
3.91
278
279
3.998341
GGCATTCACAAATCACAAAGCAT
59.002
39.130
0.00
0.00
0.00
3.79
279
280
3.181468
TGGCATTCACAAATCACAAAGCA
60.181
39.130
0.00
0.00
0.00
3.91
280
281
3.184986
GTGGCATTCACAAATCACAAAGC
59.815
43.478
0.00
0.00
45.39
3.51
281
282
3.426191
CGTGGCATTCACAAATCACAAAG
59.574
43.478
0.00
0.00
46.36
2.77
282
283
3.181482
ACGTGGCATTCACAAATCACAAA
60.181
39.130
0.00
0.00
46.36
2.83
283
284
2.360483
ACGTGGCATTCACAAATCACAA
59.640
40.909
0.00
0.00
46.36
3.33
284
285
1.952990
ACGTGGCATTCACAAATCACA
59.047
42.857
0.00
0.00
46.36
3.58
285
286
2.287547
ACACGTGGCATTCACAAATCAC
60.288
45.455
21.57
0.00
46.36
3.06
286
287
1.952990
ACACGTGGCATTCACAAATCA
59.047
42.857
21.57
0.00
46.36
2.57
287
288
2.031245
TGACACGTGGCATTCACAAATC
60.031
45.455
23.03
3.54
46.36
2.17
288
289
1.952990
TGACACGTGGCATTCACAAAT
59.047
42.857
23.03
0.00
46.36
2.32
289
290
1.383523
TGACACGTGGCATTCACAAA
58.616
45.000
23.03
0.00
46.36
2.83
290
291
1.535028
GATGACACGTGGCATTCACAA
59.465
47.619
36.07
8.22
45.42
3.33
291
292
1.155889
GATGACACGTGGCATTCACA
58.844
50.000
36.07
9.07
45.42
3.58
292
293
0.447801
GGATGACACGTGGCATTCAC
59.552
55.000
36.07
24.74
45.42
3.18
293
294
0.036022
TGGATGACACGTGGCATTCA
59.964
50.000
36.64
36.64
46.54
2.57
294
295
1.331756
GATGGATGACACGTGGCATTC
59.668
52.381
36.07
34.16
45.42
2.67
295
296
1.339920
TGATGGATGACACGTGGCATT
60.340
47.619
36.07
22.11
45.42
3.56
297
298
0.391528
CTGATGGATGACACGTGGCA
60.392
55.000
29.28
29.28
37.54
4.92
298
299
1.091771
CCTGATGGATGACACGTGGC
61.092
60.000
21.57
19.24
34.57
5.01
299
300
0.536724
TCCTGATGGATGACACGTGG
59.463
55.000
21.57
1.66
37.46
4.94
300
301
1.645034
GTCCTGATGGATGACACGTG
58.355
55.000
15.48
15.48
45.29
4.49
307
308
0.390860
GAGACCCGTCCTGATGGATG
59.609
60.000
6.98
0.00
45.29
3.51
308
309
1.109920
CGAGACCCGTCCTGATGGAT
61.110
60.000
6.98
0.00
45.29
3.41
309
310
1.753078
CGAGACCCGTCCTGATGGA
60.753
63.158
6.98
0.00
39.90
3.41
310
311
2.808315
CGAGACCCGTCCTGATGG
59.192
66.667
0.00
0.00
37.23
3.51
311
312
2.105128
GCGAGACCCGTCCTGATG
59.895
66.667
0.00
0.00
41.15
3.07
312
313
3.518998
CGCGAGACCCGTCCTGAT
61.519
66.667
0.00
0.00
41.15
2.90
314
315
4.778415
CACGCGAGACCCGTCCTG
62.778
72.222
15.93
0.00
41.15
3.86
316
317
4.477975
CTCACGCGAGACCCGTCC
62.478
72.222
15.93
0.00
42.34
4.79
317
318
3.429141
TCTCACGCGAGACCCGTC
61.429
66.667
15.93
0.00
43.55
4.79
323
324
2.282251
ACCAGGTCTCACGCGAGA
60.282
61.111
15.93
10.37
46.28
4.04
324
325
2.179517
GACCAGGTCTCACGCGAG
59.820
66.667
15.93
4.59
40.98
5.03
325
326
2.282251
AGACCAGGTCTCACGCGA
60.282
61.111
17.31
0.00
38.71
5.87
332
333
6.882768
AAAGAATTCTATGAGACCAGGTCT
57.117
37.500
23.18
23.18
46.42
3.85
333
334
6.540551
GGAAAAGAATTCTATGAGACCAGGTC
59.459
42.308
12.25
12.25
0.00
3.85
334
335
6.418946
GGAAAAGAATTCTATGAGACCAGGT
58.581
40.000
8.75
0.00
0.00
4.00
335
336
5.525378
CGGAAAAGAATTCTATGAGACCAGG
59.475
44.000
8.75
0.00
0.00
4.45
336
337
5.525378
CCGGAAAAGAATTCTATGAGACCAG
59.475
44.000
8.75
4.42
0.00
4.00
337
338
5.428253
CCGGAAAAGAATTCTATGAGACCA
58.572
41.667
8.75
0.00
0.00
4.02
338
339
4.816925
CCCGGAAAAGAATTCTATGAGACC
59.183
45.833
8.75
6.24
0.00
3.85
339
340
5.671493
TCCCGGAAAAGAATTCTATGAGAC
58.329
41.667
8.75
0.00
0.00
3.36
340
341
5.425539
ACTCCCGGAAAAGAATTCTATGAGA
59.574
40.000
8.75
0.00
0.00
3.27
341
342
5.675538
ACTCCCGGAAAAGAATTCTATGAG
58.324
41.667
8.75
9.17
0.00
2.90
342
343
5.693769
ACTCCCGGAAAAGAATTCTATGA
57.306
39.130
8.75
0.00
0.00
2.15
343
344
5.066505
CCAACTCCCGGAAAAGAATTCTATG
59.933
44.000
8.75
0.00
0.00
2.23
344
345
5.193679
CCAACTCCCGGAAAAGAATTCTAT
58.806
41.667
8.75
0.41
0.00
1.98
345
346
4.566907
CCCAACTCCCGGAAAAGAATTCTA
60.567
45.833
8.75
0.00
0.00
2.10
346
347
3.421844
CCAACTCCCGGAAAAGAATTCT
58.578
45.455
0.73
0.88
0.00
2.40
347
348
2.492088
CCCAACTCCCGGAAAAGAATTC
59.508
50.000
0.73
0.00
0.00
2.17
348
349
2.525368
CCCAACTCCCGGAAAAGAATT
58.475
47.619
0.73
0.00
0.00
2.17
349
350
1.891011
GCCCAACTCCCGGAAAAGAAT
60.891
52.381
0.73
0.00
0.00
2.40
350
351
0.538746
GCCCAACTCCCGGAAAAGAA
60.539
55.000
0.73
0.00
0.00
2.52
351
352
1.074248
GCCCAACTCCCGGAAAAGA
59.926
57.895
0.73
0.00
0.00
2.52
352
353
1.074951
AGCCCAACTCCCGGAAAAG
59.925
57.895
0.73
0.00
0.00
2.27
353
354
1.228429
CAGCCCAACTCCCGGAAAA
60.228
57.895
0.73
0.00
0.00
2.29
354
355
1.497309
ATCAGCCCAACTCCCGGAAA
61.497
55.000
0.73
0.00
0.00
3.13
355
356
1.497309
AATCAGCCCAACTCCCGGAA
61.497
55.000
0.73
0.00
0.00
4.30
356
357
0.619255
TAATCAGCCCAACTCCCGGA
60.619
55.000
0.73
0.00
0.00
5.14
357
358
0.474184
ATAATCAGCCCAACTCCCGG
59.526
55.000
0.00
0.00
0.00
5.73
358
359
2.767505
GTATAATCAGCCCAACTCCCG
58.232
52.381
0.00
0.00
0.00
5.14
461
464
2.243736
TCACCAACAGTTCCCTTTTCCT
59.756
45.455
0.00
0.00
0.00
3.36
467
470
0.773644
AGCATCACCAACAGTTCCCT
59.226
50.000
0.00
0.00
0.00
4.20
499
502
5.928264
GCAAATTGGAACTCAATGCTTAAGT
59.072
36.000
4.02
0.00
44.68
2.24
633
636
2.508526
AGGCAATCAGGACAAACAGTC
58.491
47.619
0.00
0.00
46.83
3.51
635
638
5.649782
AATTAGGCAATCAGGACAAACAG
57.350
39.130
0.00
0.00
0.00
3.16
712
745
3.500982
CATTGTGCAAATGTAACTCCGG
58.499
45.455
0.00
0.00
0.00
5.14
1090
1147
2.880890
GCTGTTTTCCTGAGCTTGAAGA
59.119
45.455
0.00
0.00
0.00
2.87
1113
1170
4.574013
CCTAGCATCTGAGATTGGTTGAAC
59.426
45.833
0.00
0.00
0.00
3.18
1290
1374
4.215613
TCAGTAACATCCTCGGTCATATCG
59.784
45.833
0.00
0.00
0.00
2.92
1438
1525
4.946157
CACTATTGCAATGTTCCTCCTTCT
59.054
41.667
22.27
0.00
0.00
2.85
1629
1716
5.866207
AGATGATGCATGCTATCAAGAAGA
58.134
37.500
25.91
10.55
38.01
2.87
2104
2191
3.516615
AGCGATGTTTCTGAAGCTCTAC
58.483
45.455
5.84
0.00
0.00
2.59
2131
2218
3.118775
ACTTCCAGTTTTTGTTCTTGGGC
60.119
43.478
0.00
0.00
0.00
5.36
2250
2337
2.846193
AGCTGAAGTTCCAAACGCTTA
58.154
42.857
0.00
0.00
36.23
3.09
2344
2442
9.243105
ACTTTCATACTTACCATATTGCAAACT
57.757
29.630
1.71
0.00
0.00
2.66
2413
2511
9.241317
GATTTTATCAATATGAAACAGTGCCAG
57.759
33.333
0.00
0.00
0.00
4.85
2416
2514
8.749499
GCAGATTTTATCAATATGAAACAGTGC
58.251
33.333
0.00
0.00
0.00
4.40
2660
2766
2.054799
ACCAACTGTGTATCACCCAGT
58.945
47.619
0.00
0.00
41.01
4.00
2822
2929
4.645588
GCTCCTACTAGGCTTCTTAGTGAA
59.354
45.833
0.00
0.00
34.61
3.18
2870
2977
2.766313
CACAAGAACACTGAATCCGGA
58.234
47.619
6.61
6.61
0.00
5.14
2915
3022
8.299570
CAATATTTGGATAGTGAAACCCTATGC
58.700
37.037
0.00
0.00
36.24
3.14
3021
3128
0.323178
ATGGCAGCCCAGAGAGTTTG
60.323
55.000
9.64
0.00
46.24
2.93
3134
3241
2.048603
GGACTTGGGAGTGCCATGC
61.049
63.158
15.43
8.88
38.20
4.06
3219
3336
4.855715
TCTCTTCATAGCCTACCAATCG
57.144
45.455
0.00
0.00
0.00
3.34
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.