Multiple sequence alignment - TraesCS4D01G109600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G109600 chr4D 100.000 4133 0 0 1 4133 88907811 88903679 0.000000e+00 7633
1 TraesCS4D01G109600 chr4A 93.410 4082 170 36 31 4051 501641344 501637301 0.000000e+00 5956
2 TraesCS4D01G109600 chr4B 94.951 3605 139 28 540 4131 125682515 125678941 0.000000e+00 5609
3 TraesCS4D01G109600 chr4B 86.081 273 26 9 278 549 125690652 125690391 2.430000e-72 283
4 TraesCS4D01G109600 chr5A 82.885 1338 200 20 1782 3115 267005523 267006835 0.000000e+00 1175
5 TraesCS4D01G109600 chr5D 82.735 1338 202 21 1782 3115 207179064 207180376 0.000000e+00 1164
6 TraesCS4D01G109600 chr5B 82.524 1339 203 18 1782 3115 220581749 220580437 0.000000e+00 1147


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G109600 chr4D 88903679 88907811 4132 True 7633 7633 100.000 1 4133 1 chr4D.!!$R1 4132
1 TraesCS4D01G109600 chr4A 501637301 501641344 4043 True 5956 5956 93.410 31 4051 1 chr4A.!!$R1 4020
2 TraesCS4D01G109600 chr4B 125678941 125682515 3574 True 5609 5609 94.951 540 4131 1 chr4B.!!$R1 3591
3 TraesCS4D01G109600 chr5A 267005523 267006835 1312 False 1175 1175 82.885 1782 3115 1 chr5A.!!$F1 1333
4 TraesCS4D01G109600 chr5D 207179064 207180376 1312 False 1164 1164 82.735 1782 3115 1 chr5D.!!$F1 1333
5 TraesCS4D01G109600 chr5B 220580437 220581749 1312 True 1147 1147 82.524 1782 3115 1 chr5B.!!$R1 1333

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
860 895 0.119155 TGACACCTCCTCCATTCCCT 59.881 55.000 0.0 0.0 0.00 4.20 F
896 931 0.249405 CTCTCTCTCCGCCATTGCTC 60.249 60.000 0.0 0.0 34.43 4.26 F
897 932 1.591059 CTCTCTCCGCCATTGCTCG 60.591 63.158 0.0 0.0 34.43 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2451 2505 1.193650 GTGTTCTTGTATTCGCACGCA 59.806 47.619 0.00 0.0 0.0 5.24 R
2913 2967 2.994995 TCGTCGCTCACCACCCAT 60.995 61.111 0.00 0.0 0.0 4.00 R
3182 3236 1.158434 GGTACATTTTGTCGCCGGAA 58.842 50.000 5.05 0.0 0.0 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 9.859427 TGCAAAAATCATTCTTTACAATAGAGG 57.141 29.630 0.00 0.00 0.00 3.69
28 29 8.811378 GCAAAAATCATTCTTTACAATAGAGGC 58.189 33.333 0.00 0.00 0.00 4.70
29 30 9.013490 CAAAAATCATTCTTTACAATAGAGGCG 57.987 33.333 0.00 0.00 0.00 5.52
50 51 0.541392 AGTCACCGCCATTGAGCATA 59.459 50.000 0.00 0.00 0.00 3.14
53 54 1.065491 TCACCGCCATTGAGCATAGTT 60.065 47.619 0.00 0.00 0.00 2.24
63 64 3.251479 TGAGCATAGTTGTCATTCGCT 57.749 42.857 0.00 0.00 0.00 4.93
70 71 2.679934 TTGTCATTCGCTGCCGCTG 61.680 57.895 0.00 0.00 0.00 5.18
93 94 4.100707 TGCAAAAGCTCATCTACATTGC 57.899 40.909 0.00 0.00 38.45 3.56
96 97 1.303309 AAGCTCATCTACATTGCCGC 58.697 50.000 0.00 0.00 0.00 6.53
99 100 0.249447 CTCATCTACATTGCCGCCGA 60.249 55.000 0.00 0.00 0.00 5.54
115 116 1.153823 CGACGAGCACCACCTTAGG 60.154 63.158 0.00 0.00 0.00 2.69
120 121 1.809684 GAGCACCACCTTAGGTTGTC 58.190 55.000 5.05 1.78 40.77 3.18
130 131 3.511934 ACCTTAGGTTGTCTCTGCTACTG 59.488 47.826 0.00 0.00 27.29 2.74
145 146 2.030007 GCTACTGCAAAAGCCACATCAA 60.030 45.455 8.44 0.00 39.41 2.57
154 155 0.610232 AGCCACATCAAGACCCTTGC 60.610 55.000 2.04 0.00 0.00 4.01
155 156 0.895100 GCCACATCAAGACCCTTGCA 60.895 55.000 2.04 0.00 0.00 4.08
161 166 1.999648 TCAAGACCCTTGCAGCAAAT 58.000 45.000 9.65 0.00 0.00 2.32
165 170 2.450476 AGACCCTTGCAGCAAATAAGG 58.550 47.619 9.65 6.58 40.48 2.69
182 187 0.610232 AGGACTTGCACATCCAAGCC 60.610 55.000 16.07 3.01 44.66 4.35
183 188 1.598701 GGACTTGCACATCCAAGCCC 61.599 60.000 10.07 0.00 44.66 5.19
186 191 3.203086 TTGCACATCCAAGCCCGGA 62.203 57.895 0.73 0.00 40.07 5.14
190 195 2.438434 CATCCAAGCCCGGACACC 60.438 66.667 0.73 0.00 38.07 4.16
191 196 2.933287 ATCCAAGCCCGGACACCA 60.933 61.111 0.73 0.00 38.07 4.17
219 224 1.271597 GGACATGGACAAGCTCAAGGT 60.272 52.381 0.00 0.00 0.00 3.50
226 231 1.738099 CAAGCTCAAGGTCGGGTCG 60.738 63.158 0.00 0.00 0.00 4.79
246 251 0.693049 TCCCCTTCTTGCTTCACTCC 59.307 55.000 0.00 0.00 0.00 3.85
253 258 0.957395 CTTGCTTCACTCCGCACCAT 60.957 55.000 0.00 0.00 35.60 3.55
279 294 4.314440 GTCCCAGCCACGTCTGCA 62.314 66.667 9.09 0.00 32.87 4.41
298 314 4.650734 TGCACACTCCTTGATTATGTCAA 58.349 39.130 0.00 0.00 44.36 3.18
301 317 5.575957 CACACTCCTTGATTATGTCAATGC 58.424 41.667 0.00 0.00 45.36 3.56
304 320 4.943705 ACTCCTTGATTATGTCAATGCGTT 59.056 37.500 0.00 0.00 45.36 4.84
306 322 4.033932 TCCTTGATTATGTCAATGCGTTCG 59.966 41.667 0.00 0.00 45.36 3.95
366 382 6.458342 GCATGGCTAGTTTGTTTATGTAGGAC 60.458 42.308 0.00 0.00 0.00 3.85
368 384 4.569564 GGCTAGTTTGTTTATGTAGGACCG 59.430 45.833 0.00 0.00 0.00 4.79
383 399 0.674895 GACCGCACTGCTTCTCCATT 60.675 55.000 0.00 0.00 0.00 3.16
403 419 5.454062 CATTAAGAGAAGAGGAGGAGGAGA 58.546 45.833 0.00 0.00 0.00 3.71
404 420 3.382083 AAGAGAAGAGGAGGAGGAGAC 57.618 52.381 0.00 0.00 0.00 3.36
408 424 1.511316 AAGAGGAGGAGGAGACGGGT 61.511 60.000 0.00 0.00 0.00 5.28
411 427 3.462678 GAGGAGGAGACGGGTGCC 61.463 72.222 0.00 0.00 0.00 5.01
460 482 1.522355 CGGCGTTCATGATCCAGCT 60.522 57.895 0.00 0.00 0.00 4.24
465 487 1.202348 CGTTCATGATCCAGCTCGTCT 60.202 52.381 0.00 0.00 0.00 4.18
469 491 0.467384 ATGATCCAGCTCGTCTTGGG 59.533 55.000 0.00 0.00 0.00 4.12
475 497 2.357034 GCTCGTCTTGGGCGAACA 60.357 61.111 0.00 0.00 37.93 3.18
478 500 3.423154 CGTCTTGGGCGAACAGGC 61.423 66.667 0.00 0.00 45.91 4.85
549 571 0.971386 ATGGAGGCCAAGTTGCAAAG 59.029 50.000 5.01 0.00 36.95 2.77
555 577 1.732917 CCAAGTTGCAAAGCCGTGA 59.267 52.632 0.00 0.00 0.00 4.35
589 611 4.663636 ACCGTTCGATCAAAAACAGATC 57.336 40.909 0.00 0.00 38.77 2.75
594 620 5.622378 GTTCGATCAAAAACAGATCTGACC 58.378 41.667 29.27 7.36 39.73 4.02
637 663 1.333524 CGCGCAACTTCATCCATCATC 60.334 52.381 8.75 0.00 0.00 2.92
860 895 0.119155 TGACACCTCCTCCATTCCCT 59.881 55.000 0.00 0.00 0.00 4.20
894 929 1.227497 CCTCTCTCTCCGCCATTGC 60.227 63.158 0.00 0.00 0.00 3.56
895 930 1.684386 CCTCTCTCTCCGCCATTGCT 61.684 60.000 0.00 0.00 34.43 3.91
896 931 0.249405 CTCTCTCTCCGCCATTGCTC 60.249 60.000 0.00 0.00 34.43 4.26
897 932 1.591059 CTCTCTCCGCCATTGCTCG 60.591 63.158 0.00 0.00 34.43 5.03
898 933 3.267860 CTCTCCGCCATTGCTCGC 61.268 66.667 0.00 0.00 34.43 5.03
899 934 4.838152 TCTCCGCCATTGCTCGCC 62.838 66.667 0.00 0.00 34.43 5.54
1631 1685 3.659092 CTGCCTCGCCAAAACGCA 61.659 61.111 0.00 0.00 0.00 5.24
2124 2178 2.029623 GCCATGCTCCAGATGTTCAAT 58.970 47.619 0.00 0.00 0.00 2.57
2451 2505 6.041069 GCTACCTGATGAACTACCTCAAGTAT 59.959 42.308 0.00 0.00 0.00 2.12
3182 3236 3.528370 CCGCCCTCCGTTCTCGAT 61.528 66.667 0.00 0.00 39.71 3.59
3205 3259 1.816074 GGCGACAAAATGTACCTCCA 58.184 50.000 0.00 0.00 0.00 3.86
3389 3447 7.678837 ACTCTCTTGATTCTTGATTCTTCTGT 58.321 34.615 0.00 0.00 0.00 3.41
3391 3449 7.448420 TCTCTTGATTCTTGATTCTTCTGTGT 58.552 34.615 0.00 0.00 0.00 3.72
3514 3572 3.251974 GCAGAGCACACTGACTGC 58.748 61.111 0.00 0.00 46.25 4.40
3598 3656 4.445452 TCATTTTCTTGGCATGAGAAGC 57.555 40.909 11.17 0.00 34.84 3.86
3644 3704 7.229506 ACAATTCAGCCAAATAATCCTAGCTAC 59.770 37.037 0.00 0.00 0.00 3.58
3720 3786 9.889128 AAAAAGCATAATAACAAATACAGCCAT 57.111 25.926 0.00 0.00 0.00 4.40
3761 3850 2.064573 AATAAAGCCAACAAGCACGC 57.935 45.000 0.00 0.00 34.23 5.34
3782 3871 4.155099 CGCATAAGTTTACAACATCCCACA 59.845 41.667 0.00 0.00 0.00 4.17
3791 3881 1.178534 AACATCCCACAAACGCCCAG 61.179 55.000 0.00 0.00 0.00 4.45
3795 3885 0.395862 TCCCACAAACGCCCAGAAAA 60.396 50.000 0.00 0.00 0.00 2.29
3796 3886 0.461961 CCCACAAACGCCCAGAAAAA 59.538 50.000 0.00 0.00 0.00 1.94
3809 3899 4.767409 GCCCAGAAAAAGAGGATACAAAGT 59.233 41.667 0.00 0.00 41.41 2.66
3844 3934 0.243636 GCCACCGCAGCAATAAGTTT 59.756 50.000 0.00 0.00 34.03 2.66
3857 3947 7.037438 CAGCAATAAGTTTCAATACTTGGCAT 58.963 34.615 0.00 0.00 38.72 4.40
3858 3948 7.009815 CAGCAATAAGTTTCAATACTTGGCATG 59.990 37.037 0.00 0.00 38.72 4.06
3912 4002 1.548357 ATGAGACGAAGGCAGCCACT 61.548 55.000 15.80 0.00 0.00 4.00
3927 4017 0.617413 CCACTGAGGAGAGCCACAAT 59.383 55.000 0.00 0.00 41.22 2.71
3975 4065 4.096532 TCTTGACGAGATAGCGAAGATGTT 59.903 41.667 0.00 0.00 34.83 2.71
3998 4088 1.727880 GGTACGCACACGCAAGATAAA 59.272 47.619 0.00 0.00 45.53 1.40
4040 4130 3.190874 CTCCTTGTCGCACTCCTTAATC 58.809 50.000 0.00 0.00 0.00 1.75
4041 4131 2.832129 TCCTTGTCGCACTCCTTAATCT 59.168 45.455 0.00 0.00 0.00 2.40
4059 4149 4.713792 ATCTATGATCTCCCAAACCACC 57.286 45.455 0.00 0.00 0.00 4.61
4079 4169 0.321653 AAGGTTCTTAGCCCTGCACG 60.322 55.000 0.00 0.00 0.00 5.34
4080 4170 1.192146 AGGTTCTTAGCCCTGCACGA 61.192 55.000 0.00 0.00 0.00 4.35
4100 4190 7.328249 TGCACGAAATCTTCCATTTAACAAATC 59.672 33.333 0.00 0.00 0.00 2.17
4123 4213 4.326548 CGGTATTTCTTCTTGTTCTCCGTC 59.673 45.833 0.00 0.00 0.00 4.79
4131 4221 2.297880 TCTTGTTCTCCGTCGAATTCCA 59.702 45.455 0.00 0.00 0.00 3.53
4132 4222 2.823924 TGTTCTCCGTCGAATTCCAA 57.176 45.000 0.00 0.00 0.00 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 9.859427 CCTCTATTGTAAAGAATGATTTTTGCA 57.141 29.630 0.00 0.00 0.00 4.08
2 3 8.811378 GCCTCTATTGTAAAGAATGATTTTTGC 58.189 33.333 0.00 0.00 0.00 3.68
3 4 9.013490 CGCCTCTATTGTAAAGAATGATTTTTG 57.987 33.333 0.00 0.00 0.00 2.44
4 5 8.956426 TCGCCTCTATTGTAAAGAATGATTTTT 58.044 29.630 0.00 0.00 0.00 1.94
5 6 8.506168 TCGCCTCTATTGTAAAGAATGATTTT 57.494 30.769 0.00 0.00 0.00 1.82
6 7 8.506168 TTCGCCTCTATTGTAAAGAATGATTT 57.494 30.769 0.00 0.00 0.00 2.17
7 8 7.770897 ACTTCGCCTCTATTGTAAAGAATGATT 59.229 33.333 0.00 0.00 0.00 2.57
8 9 7.275920 ACTTCGCCTCTATTGTAAAGAATGAT 58.724 34.615 0.00 0.00 0.00 2.45
9 10 6.640518 ACTTCGCCTCTATTGTAAAGAATGA 58.359 36.000 0.00 0.00 0.00 2.57
10 11 6.535150 TGACTTCGCCTCTATTGTAAAGAATG 59.465 38.462 0.00 0.00 0.00 2.67
11 12 6.535508 GTGACTTCGCCTCTATTGTAAAGAAT 59.464 38.462 0.00 0.00 0.00 2.40
12 13 5.867716 GTGACTTCGCCTCTATTGTAAAGAA 59.132 40.000 0.00 0.00 0.00 2.52
13 14 5.408356 GTGACTTCGCCTCTATTGTAAAGA 58.592 41.667 0.00 0.00 0.00 2.52
14 15 4.567159 GGTGACTTCGCCTCTATTGTAAAG 59.433 45.833 1.30 0.00 43.02 1.85
15 16 4.501071 GGTGACTTCGCCTCTATTGTAAA 58.499 43.478 1.30 0.00 43.02 2.01
16 17 3.428452 CGGTGACTTCGCCTCTATTGTAA 60.428 47.826 7.23 0.00 44.11 2.41
17 18 2.098607 CGGTGACTTCGCCTCTATTGTA 59.901 50.000 7.23 0.00 44.11 2.41
18 19 1.135083 CGGTGACTTCGCCTCTATTGT 60.135 52.381 7.23 0.00 44.11 2.71
19 20 1.560923 CGGTGACTTCGCCTCTATTG 58.439 55.000 7.23 0.00 44.11 1.90
20 21 0.179108 GCGGTGACTTCGCCTCTATT 60.179 55.000 7.23 0.00 46.55 1.73
21 22 1.437986 GCGGTGACTTCGCCTCTAT 59.562 57.895 7.23 0.00 46.55 1.98
22 23 2.882876 GCGGTGACTTCGCCTCTA 59.117 61.111 7.23 0.00 46.55 2.43
28 29 1.970917 GCTCAATGGCGGTGACTTCG 61.971 60.000 0.00 0.00 0.00 3.79
29 30 0.955428 TGCTCAATGGCGGTGACTTC 60.955 55.000 0.00 0.00 34.52 3.01
50 51 2.680913 GCGGCAGCGAATGACAACT 61.681 57.895 0.00 0.00 36.31 3.16
63 64 2.279385 GCTTTTGCAACAGCGGCA 60.279 55.556 20.85 0.00 46.58 5.69
96 97 1.153823 CTAAGGTGGTGCTCGTCGG 60.154 63.158 0.00 0.00 0.00 4.79
99 100 0.034896 CAACCTAAGGTGGTGCTCGT 59.965 55.000 0.00 0.00 40.73 4.18
130 131 1.337167 GGGTCTTGATGTGGCTTTTGC 60.337 52.381 0.00 0.00 46.64 3.68
145 146 2.041620 TCCTTATTTGCTGCAAGGGTCT 59.958 45.455 15.39 2.53 39.48 3.85
154 155 3.921119 TGTGCAAGTCCTTATTTGCTG 57.079 42.857 10.13 0.00 45.71 4.41
155 156 3.445096 GGATGTGCAAGTCCTTATTTGCT 59.555 43.478 10.59 0.00 45.71 3.91
161 166 2.436417 GCTTGGATGTGCAAGTCCTTA 58.564 47.619 16.94 6.90 35.49 2.69
165 170 1.885871 GGGCTTGGATGTGCAAGTC 59.114 57.895 14.39 12.29 32.72 3.01
182 187 2.829914 CATGGCCATGGTGTCCGG 60.830 66.667 34.31 9.41 35.24 5.14
226 231 1.611936 GGAGTGAAGCAAGAAGGGGAC 60.612 57.143 0.00 0.00 0.00 4.46
236 241 1.672030 CATGGTGCGGAGTGAAGCA 60.672 57.895 0.00 0.00 41.55 3.91
263 268 4.314440 GTGCAGACGTGGCTGGGA 62.314 66.667 4.63 0.00 36.41 4.37
276 281 4.284829 TGACATAATCAAGGAGTGTGCA 57.715 40.909 0.00 0.00 33.02 4.57
298 314 4.802051 ATGGCCAGCCGAACGCAT 62.802 61.111 13.05 0.00 41.38 4.73
366 382 1.667724 CTTAATGGAGAAGCAGTGCGG 59.332 52.381 10.00 0.00 0.00 5.69
368 384 3.866651 TCTCTTAATGGAGAAGCAGTGC 58.133 45.455 7.13 7.13 39.13 4.40
383 399 3.118186 CGTCTCCTCCTCCTCTTCTCTTA 60.118 52.174 0.00 0.00 0.00 2.10
394 410 3.462678 GGCACCCGTCTCCTCCTC 61.463 72.222 0.00 0.00 0.00 3.71
451 473 1.900351 CCCAAGACGAGCTGGATCA 59.100 57.895 1.44 0.00 0.00 2.92
460 482 2.342279 CCTGTTCGCCCAAGACGA 59.658 61.111 0.00 0.00 37.86 4.20
494 516 2.337532 CAACAAGTGGCCTGCTGC 59.662 61.111 3.32 0.00 40.16 5.25
516 538 8.010105 ACTTGGCCTCCATTATAATCCAATTTA 58.990 33.333 13.22 0.00 31.53 1.40
517 539 6.845975 ACTTGGCCTCCATTATAATCCAATTT 59.154 34.615 13.22 4.62 31.53 1.82
528 550 2.300956 TTGCAACTTGGCCTCCATTA 57.699 45.000 3.32 0.00 31.53 1.90
530 552 0.971386 CTTTGCAACTTGGCCTCCAT 59.029 50.000 3.32 0.00 31.53 3.41
549 571 1.573829 TTCGCAACCATCTTCACGGC 61.574 55.000 0.00 0.00 0.00 5.68
860 895 4.577096 AGAGAGGGAGAAGAGAGAGGATA 58.423 47.826 0.00 0.00 0.00 2.59
898 933 3.443045 GTGCAATGGCTCGTGGGG 61.443 66.667 0.00 0.00 41.91 4.96
907 942 0.817013 ATAGTTTGGGCGTGCAATGG 59.183 50.000 0.00 0.00 0.00 3.16
908 943 1.531677 CGATAGTTTGGGCGTGCAATG 60.532 52.381 0.00 0.00 0.00 2.82
909 944 0.732571 CGATAGTTTGGGCGTGCAAT 59.267 50.000 0.00 0.00 0.00 3.56
910 945 0.320858 TCGATAGTTTGGGCGTGCAA 60.321 50.000 0.00 0.00 37.40 4.08
911 946 0.739462 CTCGATAGTTTGGGCGTGCA 60.739 55.000 0.00 0.00 37.40 4.57
912 947 1.429148 CCTCGATAGTTTGGGCGTGC 61.429 60.000 0.00 0.00 37.40 5.34
1438 1492 2.028190 CTTGATCGCGGCGAGGAT 59.972 61.111 29.64 14.14 39.91 3.24
1631 1685 4.379243 CGGACTCGCTGGCCTTGT 62.379 66.667 3.32 0.00 43.44 3.16
2280 2334 2.584391 GGACTTGAGGTCGGCCAGT 61.584 63.158 9.71 2.06 45.35 4.00
2451 2505 1.193650 GTGTTCTTGTATTCGCACGCA 59.806 47.619 0.00 0.00 0.00 5.24
2913 2967 2.994995 TCGTCGCTCACCACCCAT 60.995 61.111 0.00 0.00 0.00 4.00
3182 3236 1.158434 GGTACATTTTGTCGCCGGAA 58.842 50.000 5.05 0.00 0.00 4.30
3389 3447 6.448053 GCGTATAGAAAATGCGATTAGACA 57.552 37.500 0.00 0.00 0.00 3.41
3443 3501 6.497259 TCCCGCTATTATTATTCTCAGGAACT 59.503 38.462 0.00 0.00 43.88 3.01
3514 3572 1.596260 CAACGTGAGCTCCATATGCAG 59.404 52.381 12.15 0.00 0.00 4.41
3585 3643 1.378911 ATGCCGCTTCTCATGCCAA 60.379 52.632 0.00 0.00 0.00 4.52
3598 3656 1.691196 ATATTTGGTGTCCCATGCCG 58.309 50.000 0.00 0.00 41.49 5.69
3699 3765 9.398170 CAGTAATGGCTGTATTTGTTATTATGC 57.602 33.333 0.00 0.00 0.00 3.14
3720 3786 5.925506 TTATGAAGTCGGGACATCAGTAA 57.074 39.130 11.70 8.13 41.49 2.24
3782 3871 2.358322 TCCTCTTTTTCTGGGCGTTT 57.642 45.000 0.00 0.00 0.00 3.60
3809 3899 4.250464 CGGTGGCAGTCTTCATTACTTTA 58.750 43.478 0.00 0.00 0.00 1.85
3857 3947 1.456705 GGTTGTTTCCTGGGGTGCA 60.457 57.895 0.00 0.00 0.00 4.57
3858 3948 1.456705 TGGTTGTTTCCTGGGGTGC 60.457 57.895 0.00 0.00 0.00 5.01
3912 4002 3.406442 AGGATTGTGGCTCTCCTCA 57.594 52.632 0.00 0.00 34.20 3.86
3949 4039 3.877508 TCTTCGCTATCTCGTCAAGATCA 59.122 43.478 0.00 0.00 43.90 2.92
4040 4130 3.931907 TGGTGGTTTGGGAGATCATAG 57.068 47.619 0.00 0.00 0.00 2.23
4041 4131 3.053693 CCTTGGTGGTTTGGGAGATCATA 60.054 47.826 0.00 0.00 0.00 2.15
4059 4149 1.168714 GTGCAGGGCTAAGAACCTTG 58.831 55.000 0.00 0.00 37.34 3.61
4071 4161 1.755179 ATGGAAGATTTCGTGCAGGG 58.245 50.000 6.56 0.00 0.00 4.45
4100 4190 4.243270 ACGGAGAACAAGAAGAAATACCG 58.757 43.478 0.00 0.00 41.85 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.