Multiple sequence alignment - TraesCS4D01G109500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G109500 chr4D 100.000 1909 0 0 855 2763 88700367 88702275 0.000000e+00 3526.0
1 TraesCS4D01G109500 chr4D 100.000 522 0 0 1 522 88699513 88700034 0.000000e+00 965.0
2 TraesCS4D01G109500 chr4D 91.860 516 39 2 2247 2762 439860784 439860272 0.000000e+00 717.0
3 TraesCS4D01G109500 chr4D 91.618 513 37 6 2247 2759 53195243 53195749 0.000000e+00 704.0
4 TraesCS4D01G109500 chr4B 93.364 1085 37 20 871 1932 125481248 125482320 0.000000e+00 1572.0
5 TraesCS4D01G109500 chr4B 92.023 514 39 1 2250 2763 108414429 108413918 0.000000e+00 721.0
6 TraesCS4D01G109500 chr4B 91.739 230 19 0 2017 2246 108415404 108415175 1.230000e-83 320.0
7 TraesCS4D01G109500 chr4A 92.069 1097 49 20 855 1932 501468316 501469393 0.000000e+00 1509.0
8 TraesCS4D01G109500 chr6D 94.197 517 27 2 2247 2763 227393834 227394347 0.000000e+00 785.0
9 TraesCS4D01G109500 chr6D 91.266 229 18 2 2020 2247 227392884 227393111 7.430000e-81 311.0
10 TraesCS4D01G109500 chr6B 93.424 517 26 4 2247 2763 339363768 339364276 0.000000e+00 760.0
11 TraesCS4D01G109500 chr6B 90.222 225 22 0 2021 2245 579093858 579093634 7.480000e-76 294.0
12 TraesCS4D01G109500 chr5B 92.871 519 33 3 2247 2763 7850894 7850378 0.000000e+00 750.0
13 TraesCS4D01G109500 chr5B 90.222 225 21 1 2023 2247 546970044 546969821 2.690000e-75 292.0
14 TraesCS4D01G109500 chr5B 85.520 221 19 9 64 272 143315612 143315831 4.630000e-53 219.0
15 TraesCS4D01G109500 chr5B 84.581 227 21 10 64 280 43823329 43823551 2.160000e-51 213.0
16 TraesCS4D01G109500 chr5B 87.342 79 8 2 1932 2009 544508020 544507943 3.790000e-14 89.8
17 TraesCS4D01G109500 chr6A 92.843 517 35 1 2247 2763 315609165 315609679 0.000000e+00 749.0
18 TraesCS4D01G109500 chr6A 90.830 229 18 3 2020 2247 315608197 315608423 1.240000e-78 303.0
19 TraesCS4D01G109500 chr1D 92.456 517 37 1 2247 2763 57072076 57071562 0.000000e+00 737.0
20 TraesCS4D01G109500 chr5A 92.008 513 39 1 2247 2759 477429253 477429763 0.000000e+00 719.0
21 TraesCS4D01G109500 chr5A 86.878 221 16 10 64 272 494858654 494858873 4.600000e-58 235.0
22 TraesCS4D01G109500 chr5A 88.158 76 6 3 1932 2006 632761209 632761282 1.360000e-13 87.9
23 TraesCS4D01G109500 chr3A 92.727 220 16 0 2027 2246 100428119 100427900 4.440000e-83 318.0
24 TraesCS4D01G109500 chr3D 90.456 241 21 2 2008 2247 76942089 76942328 1.600000e-82 316.0
25 TraesCS4D01G109500 chr3D 85.782 211 21 8 64 266 303781156 303781365 5.990000e-52 215.0
26 TraesCS4D01G109500 chr3D 86.076 79 10 1 1932 2009 103231015 103230937 1.760000e-12 84.2
27 TraesCS4D01G109500 chr7D 90.789 228 21 0 2018 2245 557080176 557080403 3.460000e-79 305.0
28 TraesCS4D01G109500 chr7D 87.037 216 20 6 64 272 371842656 371842870 1.280000e-58 237.0
29 TraesCS4D01G109500 chr7D 85.714 91 8 4 1918 2006 3331700 3331613 1.050000e-14 91.6
30 TraesCS4D01G109500 chr1A 90.667 225 21 0 2021 2245 499925642 499925418 1.610000e-77 300.0
31 TraesCS4D01G109500 chr1A 84.279 229 20 12 68 283 369581895 369581670 2.790000e-50 209.0
32 TraesCS4D01G109500 chr2D 85.965 228 18 10 64 279 2078928 2079153 5.950000e-57 231.0
33 TraesCS4D01G109500 chr2D 84.889 225 21 8 64 276 5419872 5420095 5.990000e-52 215.0
34 TraesCS4D01G109500 chr2D 87.500 80 10 0 1263 1342 382196107 382196186 2.930000e-15 93.5
35 TraesCS4D01G109500 chr2D 91.803 61 5 0 3 63 459350310 459350250 4.900000e-13 86.1
36 TraesCS4D01G109500 chr5D 85.586 222 18 10 64 272 481752935 481752715 1.290000e-53 220.0
37 TraesCS4D01G109500 chr5D 87.179 78 9 1 1930 2006 57825775 57825698 1.360000e-13 87.9
38 TraesCS4D01G109500 chr7B 88.462 78 9 0 1932 2009 143052253 143052176 8.150000e-16 95.3
39 TraesCS4D01G109500 chr7B 86.076 79 9 2 1932 2009 142862915 142862838 1.760000e-12 84.2
40 TraesCS4D01G109500 chr2B 87.500 80 10 0 1263 1342 453078525 453078604 2.930000e-15 93.5
41 TraesCS4D01G109500 chr2B 87.179 78 7 3 1930 2006 430225576 430225651 4.900000e-13 86.1
42 TraesCS4D01G109500 chr2A 88.462 78 8 1 1930 2006 83707838 83707761 2.930000e-15 93.5
43 TraesCS4D01G109500 chr2A 87.500 80 10 0 1263 1342 516532384 516532463 2.930000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G109500 chr4D 88699513 88702275 2762 False 2245.5 3526 100.0000 1 2763 2 chr4D.!!$F2 2762
1 TraesCS4D01G109500 chr4D 439860272 439860784 512 True 717.0 717 91.8600 2247 2762 1 chr4D.!!$R1 515
2 TraesCS4D01G109500 chr4D 53195243 53195749 506 False 704.0 704 91.6180 2247 2759 1 chr4D.!!$F1 512
3 TraesCS4D01G109500 chr4B 125481248 125482320 1072 False 1572.0 1572 93.3640 871 1932 1 chr4B.!!$F1 1061
4 TraesCS4D01G109500 chr4B 108413918 108415404 1486 True 520.5 721 91.8810 2017 2763 2 chr4B.!!$R1 746
5 TraesCS4D01G109500 chr4A 501468316 501469393 1077 False 1509.0 1509 92.0690 855 1932 1 chr4A.!!$F1 1077
6 TraesCS4D01G109500 chr6D 227392884 227394347 1463 False 548.0 785 92.7315 2020 2763 2 chr6D.!!$F1 743
7 TraesCS4D01G109500 chr6B 339363768 339364276 508 False 760.0 760 93.4240 2247 2763 1 chr6B.!!$F1 516
8 TraesCS4D01G109500 chr5B 7850378 7850894 516 True 750.0 750 92.8710 2247 2763 1 chr5B.!!$R1 516
9 TraesCS4D01G109500 chr6A 315608197 315609679 1482 False 526.0 749 91.8365 2020 2763 2 chr6A.!!$F1 743
10 TraesCS4D01G109500 chr1D 57071562 57072076 514 True 737.0 737 92.4560 2247 2763 1 chr1D.!!$R1 516
11 TraesCS4D01G109500 chr5A 477429253 477429763 510 False 719.0 719 92.0080 2247 2759 1 chr5A.!!$F1 512

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
477 478 0.036022 GAGCTGGAACTCTGCCAAGT 59.964 55.0 0.0 0.0 40.63 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2009 2036 0.038983 TTCGATTTGTGGAGACGCGA 60.039 50.0 15.93 0.0 46.31 5.87 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.143333 GCAAGCTGCATGCCTGGG 62.143 66.667 18.28 3.99 44.26 4.45
24 25 3.458163 CAAGCTGCATGCCTGGGG 61.458 66.667 16.68 0.00 44.23 4.96
36 37 4.748144 CTGGGGCTTGCCTGGGTC 62.748 72.222 11.71 0.00 0.00 4.46
39 40 3.015145 GGGCTTGCCTGGGTCCTA 61.015 66.667 11.71 0.00 0.00 2.94
40 41 2.592308 GGCTTGCCTGGGTCCTAG 59.408 66.667 4.11 0.00 0.00 3.02
41 42 2.124529 GCTTGCCTGGGTCCTAGC 60.125 66.667 0.00 0.00 0.00 3.42
42 43 2.592308 CTTGCCTGGGTCCTAGCC 59.408 66.667 0.00 0.00 36.00 3.93
43 44 2.204074 TTGCCTGGGTCCTAGCCA 60.204 61.111 0.00 0.00 44.64 4.75
44 45 1.850289 TTGCCTGGGTCCTAGCCAA 60.850 57.895 0.00 0.00 46.28 4.52
45 46 1.431195 TTGCCTGGGTCCTAGCCAAA 61.431 55.000 0.00 0.00 46.28 3.28
46 47 1.214305 TGCCTGGGTCCTAGCCAAAT 61.214 55.000 0.00 0.00 46.28 2.32
47 48 0.466372 GCCTGGGTCCTAGCCAAATC 60.466 60.000 0.00 0.00 46.28 2.17
48 49 0.183731 CCTGGGTCCTAGCCAAATCC 59.816 60.000 0.00 0.00 46.28 3.01
49 50 1.216990 CTGGGTCCTAGCCAAATCCT 58.783 55.000 0.00 0.00 46.28 3.24
50 51 2.408565 CTGGGTCCTAGCCAAATCCTA 58.591 52.381 0.00 0.00 46.28 2.94
51 52 2.370189 CTGGGTCCTAGCCAAATCCTAG 59.630 54.545 0.00 0.00 46.28 3.02
52 53 1.072489 GGGTCCTAGCCAAATCCTAGC 59.928 57.143 0.00 0.00 35.40 3.42
53 54 1.270358 GGTCCTAGCCAAATCCTAGCG 60.270 57.143 0.00 0.00 32.74 4.26
54 55 0.393077 TCCTAGCCAAATCCTAGCGC 59.607 55.000 0.00 0.00 32.74 5.92
55 56 0.603975 CCTAGCCAAATCCTAGCGCC 60.604 60.000 2.29 0.00 32.74 6.53
56 57 0.946221 CTAGCCAAATCCTAGCGCCG 60.946 60.000 2.29 0.00 0.00 6.46
57 58 2.989055 TAGCCAAATCCTAGCGCCGC 62.989 60.000 2.29 0.00 0.00 6.53
58 59 2.203070 CCAAATCCTAGCGCCGCT 60.203 61.111 18.67 18.67 43.41 5.52
59 60 1.069090 CCAAATCCTAGCGCCGCTA 59.931 57.895 18.96 18.96 40.44 4.26
60 61 1.222115 CCAAATCCTAGCGCCGCTAC 61.222 60.000 15.99 0.00 40.44 3.58
61 62 0.249489 CAAATCCTAGCGCCGCTACT 60.249 55.000 15.99 0.00 40.44 2.57
62 63 0.249489 AAATCCTAGCGCCGCTACTG 60.249 55.000 15.99 9.56 40.44 2.74
63 64 1.107538 AATCCTAGCGCCGCTACTGA 61.108 55.000 15.99 14.74 40.44 3.41
64 65 1.797211 ATCCTAGCGCCGCTACTGAC 61.797 60.000 15.99 0.00 40.44 3.51
65 66 2.352457 CTAGCGCCGCTACTGACG 60.352 66.667 15.99 0.81 40.44 4.35
66 67 2.820619 CTAGCGCCGCTACTGACGA 61.821 63.158 15.99 0.00 40.44 4.20
67 68 2.968330 CTAGCGCCGCTACTGACGAC 62.968 65.000 15.99 0.00 40.44 4.34
69 70 4.156622 CGCCGCTACTGACGACGA 62.157 66.667 0.00 0.00 38.74 4.20
70 71 2.277373 GCCGCTACTGACGACGAG 60.277 66.667 0.00 0.00 0.00 4.18
71 72 2.403987 CCGCTACTGACGACGAGG 59.596 66.667 0.00 0.00 0.00 4.63
72 73 2.403987 CGCTACTGACGACGAGGG 59.596 66.667 0.00 0.00 0.00 4.30
73 74 2.104859 CGCTACTGACGACGAGGGA 61.105 63.158 0.00 0.00 0.00 4.20
74 75 1.437772 CGCTACTGACGACGAGGGAT 61.438 60.000 0.00 0.00 0.00 3.85
75 76 1.590932 GCTACTGACGACGAGGGATA 58.409 55.000 0.00 0.00 0.00 2.59
76 77 2.152830 GCTACTGACGACGAGGGATAT 58.847 52.381 0.00 0.00 0.00 1.63
77 78 2.553172 GCTACTGACGACGAGGGATATT 59.447 50.000 0.00 0.00 0.00 1.28
78 79 3.004524 GCTACTGACGACGAGGGATATTT 59.995 47.826 0.00 0.00 0.00 1.40
79 80 4.499357 GCTACTGACGACGAGGGATATTTT 60.499 45.833 0.00 0.00 0.00 1.82
80 81 4.467198 ACTGACGACGAGGGATATTTTT 57.533 40.909 0.00 0.00 0.00 1.94
81 82 5.587388 ACTGACGACGAGGGATATTTTTA 57.413 39.130 0.00 0.00 0.00 1.52
82 83 5.346522 ACTGACGACGAGGGATATTTTTAC 58.653 41.667 0.00 0.00 0.00 2.01
83 84 4.685924 TGACGACGAGGGATATTTTTACC 58.314 43.478 0.00 0.00 0.00 2.85
84 85 4.053983 GACGACGAGGGATATTTTTACCC 58.946 47.826 0.00 0.00 43.55 3.69
85 86 3.451902 ACGACGAGGGATATTTTTACCCA 59.548 43.478 0.00 0.00 45.43 4.51
86 87 4.080975 ACGACGAGGGATATTTTTACCCAA 60.081 41.667 0.00 0.00 45.43 4.12
87 88 4.271776 CGACGAGGGATATTTTTACCCAAC 59.728 45.833 0.00 0.00 45.43 3.77
88 89 5.182169 ACGAGGGATATTTTTACCCAACA 57.818 39.130 0.00 0.00 45.43 3.33
89 90 5.762279 ACGAGGGATATTTTTACCCAACAT 58.238 37.500 0.00 0.00 45.43 2.71
90 91 5.592688 ACGAGGGATATTTTTACCCAACATG 59.407 40.000 0.00 0.00 45.43 3.21
91 92 5.009610 CGAGGGATATTTTTACCCAACATGG 59.990 44.000 0.00 0.00 45.43 3.66
100 101 2.601067 CCAACATGGGTGGCAGCA 60.601 61.111 19.48 5.16 32.67 4.41
101 102 1.985662 CCAACATGGGTGGCAGCAT 60.986 57.895 19.48 7.36 32.67 3.79
102 103 1.216977 CAACATGGGTGGCAGCATG 59.783 57.895 19.48 19.83 40.87 4.06
103 104 1.077086 AACATGGGTGGCAGCATGA 59.923 52.632 25.12 9.60 39.69 3.07
104 105 0.324923 AACATGGGTGGCAGCATGAT 60.325 50.000 25.12 16.18 39.69 2.45
105 106 0.754217 ACATGGGTGGCAGCATGATC 60.754 55.000 25.12 8.91 39.69 2.92
106 107 0.467474 CATGGGTGGCAGCATGATCT 60.467 55.000 19.48 0.00 39.69 2.75
107 108 0.260816 ATGGGTGGCAGCATGATCTT 59.739 50.000 19.48 0.00 39.69 2.40
108 109 0.918258 TGGGTGGCAGCATGATCTTA 59.082 50.000 19.48 0.00 39.69 2.10
109 110 1.134007 TGGGTGGCAGCATGATCTTAG 60.134 52.381 19.48 0.00 39.69 2.18
110 111 1.602311 GGTGGCAGCATGATCTTAGG 58.398 55.000 12.58 0.00 39.69 2.69
111 112 1.141657 GGTGGCAGCATGATCTTAGGA 59.858 52.381 12.58 0.00 39.69 2.94
112 113 2.224719 GGTGGCAGCATGATCTTAGGAT 60.225 50.000 12.58 0.00 39.69 3.24
113 114 3.484407 GTGGCAGCATGATCTTAGGATT 58.516 45.455 0.00 0.00 39.69 3.01
114 115 3.252701 GTGGCAGCATGATCTTAGGATTG 59.747 47.826 0.00 0.00 39.69 2.67
115 116 2.818432 GGCAGCATGATCTTAGGATTGG 59.182 50.000 0.00 0.00 39.69 3.16
116 117 2.818432 GCAGCATGATCTTAGGATTGGG 59.182 50.000 0.00 0.00 39.69 4.12
117 118 2.818432 CAGCATGATCTTAGGATTGGGC 59.182 50.000 0.00 0.00 39.69 5.36
118 119 2.165998 GCATGATCTTAGGATTGGGCC 58.834 52.381 0.00 0.00 31.46 5.80
119 120 2.489619 GCATGATCTTAGGATTGGGCCA 60.490 50.000 0.00 0.00 31.46 5.36
120 121 3.152341 CATGATCTTAGGATTGGGCCAC 58.848 50.000 5.23 0.00 31.46 5.01
121 122 1.494721 TGATCTTAGGATTGGGCCACC 59.505 52.381 5.23 5.11 31.46 4.61
122 123 0.474184 ATCTTAGGATTGGGCCACCG 59.526 55.000 5.23 0.00 40.75 4.94
123 124 0.912487 TCTTAGGATTGGGCCACCGT 60.912 55.000 5.23 5.58 40.75 4.83
124 125 0.463833 CTTAGGATTGGGCCACCGTC 60.464 60.000 5.23 4.81 40.75 4.79
125 126 2.246761 TTAGGATTGGGCCACCGTCG 62.247 60.000 5.23 0.00 40.75 5.12
127 128 4.404098 GATTGGGCCACCGTCGGT 62.404 66.667 12.23 12.23 40.75 4.69
128 129 3.004354 ATTGGGCCACCGTCGGTA 61.004 61.111 18.38 0.00 40.75 4.02
129 130 2.319890 GATTGGGCCACCGTCGGTAT 62.320 60.000 18.38 5.62 40.75 2.73
130 131 1.049855 ATTGGGCCACCGTCGGTATA 61.050 55.000 18.38 0.00 40.75 1.47
131 132 1.678598 TTGGGCCACCGTCGGTATAG 61.679 60.000 18.38 10.17 40.75 1.31
132 133 2.732658 GGCCACCGTCGGTATAGG 59.267 66.667 18.38 15.61 32.11 2.57
133 134 2.028631 GCCACCGTCGGTATAGGC 59.971 66.667 23.77 23.77 35.63 3.93
134 135 2.333938 CCACCGTCGGTATAGGCG 59.666 66.667 18.38 3.15 39.19 5.52
135 136 2.484062 CCACCGTCGGTATAGGCGT 61.484 63.158 18.38 0.00 37.56 5.68
136 137 1.434696 CACCGTCGGTATAGGCGTT 59.565 57.895 18.38 0.00 37.56 4.84
137 138 0.662619 CACCGTCGGTATAGGCGTTA 59.337 55.000 18.38 0.00 37.56 3.18
138 139 1.267806 CACCGTCGGTATAGGCGTTAT 59.732 52.381 18.38 0.00 37.56 1.89
139 140 2.483877 CACCGTCGGTATAGGCGTTATA 59.516 50.000 18.38 0.00 37.56 0.98
140 141 2.484264 ACCGTCGGTATAGGCGTTATAC 59.516 50.000 17.19 9.43 42.23 1.47
141 142 2.483877 CCGTCGGTATAGGCGTTATACA 59.516 50.000 2.08 0.94 43.94 2.29
142 143 3.425359 CCGTCGGTATAGGCGTTATACAG 60.425 52.174 2.08 13.36 43.94 2.74
143 144 3.433274 CGTCGGTATAGGCGTTATACAGA 59.567 47.826 16.05 14.81 43.94 3.41
144 145 4.093998 CGTCGGTATAGGCGTTATACAGAT 59.906 45.833 17.60 0.00 45.11 2.90
145 146 5.291858 CGTCGGTATAGGCGTTATACAGATA 59.708 44.000 17.60 3.07 45.11 1.98
146 147 6.018425 CGTCGGTATAGGCGTTATACAGATAT 60.018 42.308 17.60 0.00 45.11 1.63
147 148 7.169813 CGTCGGTATAGGCGTTATACAGATATA 59.830 40.741 17.60 2.36 45.11 0.86
148 149 8.279103 GTCGGTATAGGCGTTATACAGATATAC 58.721 40.741 17.60 3.58 45.11 1.47
149 150 7.986889 TCGGTATAGGCGTTATACAGATATACA 59.013 37.037 16.05 0.22 43.94 2.29
150 151 8.781196 CGGTATAGGCGTTATACAGATATACAT 58.219 37.037 16.05 0.00 43.94 2.29
156 157 9.998106 AGGCGTTATACAGATATACATTTTTCT 57.002 29.630 0.00 0.00 0.00 2.52
171 172 9.705290 ATACATTTTTCTTTGTATTTCGCCTTT 57.295 25.926 0.00 0.00 35.96 3.11
172 173 8.432110 ACATTTTTCTTTGTATTTCGCCTTTT 57.568 26.923 0.00 0.00 0.00 2.27
173 174 8.888716 ACATTTTTCTTTGTATTTCGCCTTTTT 58.111 25.926 0.00 0.00 0.00 1.94
201 202 4.327854 GTCGTGAAGACTTTATTGGCTG 57.672 45.455 0.00 0.00 46.13 4.85
202 203 2.742053 TCGTGAAGACTTTATTGGCTGC 59.258 45.455 0.00 0.00 0.00 5.25
203 204 2.474526 CGTGAAGACTTTATTGGCTGCG 60.475 50.000 0.00 0.00 0.00 5.18
204 205 2.484264 GTGAAGACTTTATTGGCTGCGT 59.516 45.455 0.00 0.00 0.00 5.24
205 206 2.483877 TGAAGACTTTATTGGCTGCGTG 59.516 45.455 0.00 0.00 0.00 5.34
206 207 0.804989 AGACTTTATTGGCTGCGTGC 59.195 50.000 0.00 0.00 41.94 5.34
207 208 0.521291 GACTTTATTGGCTGCGTGCA 59.479 50.000 3.97 0.00 45.15 4.57
208 209 1.133025 GACTTTATTGGCTGCGTGCAT 59.867 47.619 0.00 0.00 45.15 3.96
209 210 1.133025 ACTTTATTGGCTGCGTGCATC 59.867 47.619 0.00 0.00 45.15 3.91
210 211 1.402968 CTTTATTGGCTGCGTGCATCT 59.597 47.619 0.00 0.00 45.15 2.90
211 212 1.462616 TTATTGGCTGCGTGCATCTT 58.537 45.000 0.00 0.00 45.15 2.40
212 213 2.323968 TATTGGCTGCGTGCATCTTA 57.676 45.000 0.00 0.00 45.15 2.10
213 214 1.019673 ATTGGCTGCGTGCATCTTAG 58.980 50.000 0.00 0.00 45.15 2.18
214 215 0.321564 TTGGCTGCGTGCATCTTAGT 60.322 50.000 0.00 0.00 45.15 2.24
215 216 0.321564 TGGCTGCGTGCATCTTAGTT 60.322 50.000 0.00 0.00 45.15 2.24
216 217 1.066502 TGGCTGCGTGCATCTTAGTTA 60.067 47.619 0.00 0.00 45.15 2.24
217 218 2.213499 GGCTGCGTGCATCTTAGTTAT 58.787 47.619 0.00 0.00 45.15 1.89
218 219 2.032549 GGCTGCGTGCATCTTAGTTATG 60.033 50.000 0.00 0.00 45.15 1.90
227 228 2.890808 TCTTAGTTATGCAGAGGCCG 57.109 50.000 0.00 0.00 40.13 6.13
228 229 1.412710 TCTTAGTTATGCAGAGGCCGG 59.587 52.381 0.00 0.00 40.13 6.13
229 230 0.468226 TTAGTTATGCAGAGGCCGGG 59.532 55.000 2.18 0.00 40.13 5.73
230 231 0.689745 TAGTTATGCAGAGGCCGGGT 60.690 55.000 2.18 0.00 40.13 5.28
231 232 1.819632 GTTATGCAGAGGCCGGGTG 60.820 63.158 2.18 0.00 40.13 4.61
232 233 2.297895 TTATGCAGAGGCCGGGTGT 61.298 57.895 2.18 0.00 40.13 4.16
233 234 0.978667 TTATGCAGAGGCCGGGTGTA 60.979 55.000 2.18 0.00 40.13 2.90
234 235 0.978667 TATGCAGAGGCCGGGTGTAA 60.979 55.000 2.18 0.00 40.13 2.41
235 236 1.635817 ATGCAGAGGCCGGGTGTAAT 61.636 55.000 2.18 0.00 40.13 1.89
236 237 0.978667 TGCAGAGGCCGGGTGTAATA 60.979 55.000 2.18 0.00 40.13 0.98
237 238 0.396811 GCAGAGGCCGGGTGTAATAT 59.603 55.000 2.18 0.00 0.00 1.28
238 239 1.202770 GCAGAGGCCGGGTGTAATATT 60.203 52.381 2.18 0.00 0.00 1.28
239 240 2.748465 GCAGAGGCCGGGTGTAATATTT 60.748 50.000 2.18 0.00 0.00 1.40
240 241 3.495453 GCAGAGGCCGGGTGTAATATTTA 60.495 47.826 2.18 0.00 0.00 1.40
241 242 4.710324 CAGAGGCCGGGTGTAATATTTAA 58.290 43.478 2.18 0.00 0.00 1.52
242 243 5.127491 CAGAGGCCGGGTGTAATATTTAAA 58.873 41.667 2.18 0.00 0.00 1.52
243 244 5.008316 CAGAGGCCGGGTGTAATATTTAAAC 59.992 44.000 2.18 0.00 0.00 2.01
244 245 4.209538 AGGCCGGGTGTAATATTTAAACC 58.790 43.478 2.18 0.00 0.00 3.27
245 246 4.079615 AGGCCGGGTGTAATATTTAAACCT 60.080 41.667 2.18 0.00 0.00 3.50
246 247 4.646040 GGCCGGGTGTAATATTTAAACCTT 59.354 41.667 2.18 0.00 0.00 3.50
247 248 5.127519 GGCCGGGTGTAATATTTAAACCTTT 59.872 40.000 2.18 0.00 0.00 3.11
248 249 6.351202 GGCCGGGTGTAATATTTAAACCTTTT 60.351 38.462 2.18 0.00 0.00 2.27
249 250 7.147932 GGCCGGGTGTAATATTTAAACCTTTTA 60.148 37.037 2.18 0.00 0.00 1.52
250 251 8.249638 GCCGGGTGTAATATTTAAACCTTTTAA 58.750 33.333 2.18 0.00 0.00 1.52
261 262 7.655236 TTTAAACCTTTTAAATAAAGCGCCC 57.345 32.000 2.29 0.00 0.00 6.13
262 263 5.477607 AAACCTTTTAAATAAAGCGCCCT 57.522 34.783 2.29 0.00 0.00 5.19
263 264 5.477607 AACCTTTTAAATAAAGCGCCCTT 57.522 34.783 2.29 0.00 0.00 3.95
264 265 5.477607 ACCTTTTAAATAAAGCGCCCTTT 57.522 34.783 2.29 0.94 43.43 3.11
265 266 5.860611 ACCTTTTAAATAAAGCGCCCTTTT 58.139 33.333 2.29 0.06 41.37 2.27
266 267 6.292923 ACCTTTTAAATAAAGCGCCCTTTTT 58.707 32.000 2.29 0.00 41.37 1.94
267 268 6.203915 ACCTTTTAAATAAAGCGCCCTTTTTG 59.796 34.615 2.29 0.00 41.37 2.44
268 269 6.425417 CCTTTTAAATAAAGCGCCCTTTTTGA 59.575 34.615 2.29 0.00 41.37 2.69
269 270 7.041712 CCTTTTAAATAAAGCGCCCTTTTTGAA 60.042 33.333 2.29 0.17 41.37 2.69
270 271 7.787725 TTTAAATAAAGCGCCCTTTTTGAAA 57.212 28.000 2.29 2.83 41.37 2.69
271 272 7.787725 TTAAATAAAGCGCCCTTTTTGAAAA 57.212 28.000 2.29 0.00 41.37 2.29
272 273 5.922739 AATAAAGCGCCCTTTTTGAAAAG 57.077 34.783 2.29 8.83 43.82 2.27
273 274 3.535280 AAAGCGCCCTTTTTGAAAAGA 57.465 38.095 15.79 0.00 46.39 2.52
274 275 3.751479 AAGCGCCCTTTTTGAAAAGAT 57.249 38.095 15.79 0.00 46.39 2.40
275 276 4.864704 AAGCGCCCTTTTTGAAAAGATA 57.135 36.364 15.79 0.00 46.39 1.98
276 277 4.174411 AGCGCCCTTTTTGAAAAGATAC 57.826 40.909 15.79 5.71 46.39 2.24
277 278 3.826729 AGCGCCCTTTTTGAAAAGATACT 59.173 39.130 15.79 6.52 46.39 2.12
278 279 3.920412 GCGCCCTTTTTGAAAAGATACTG 59.080 43.478 15.79 1.40 46.39 2.74
279 280 4.558697 GCGCCCTTTTTGAAAAGATACTGT 60.559 41.667 15.79 0.00 46.39 3.55
280 281 5.528870 CGCCCTTTTTGAAAAGATACTGTT 58.471 37.500 15.79 0.00 46.39 3.16
281 282 5.983118 CGCCCTTTTTGAAAAGATACTGTTT 59.017 36.000 15.79 0.00 46.39 2.83
282 283 6.478673 CGCCCTTTTTGAAAAGATACTGTTTT 59.521 34.615 15.79 0.00 46.39 2.43
283 284 7.306574 CGCCCTTTTTGAAAAGATACTGTTTTC 60.307 37.037 15.79 3.33 46.39 2.29
284 285 7.306574 GCCCTTTTTGAAAAGATACTGTTTTCG 60.307 37.037 15.79 0.00 46.39 3.46
285 286 7.169140 CCCTTTTTGAAAAGATACTGTTTTCGG 59.831 37.037 15.79 2.72 46.39 4.30
286 287 7.169140 CCTTTTTGAAAAGATACTGTTTTCGGG 59.831 37.037 15.79 0.00 46.39 5.14
287 288 6.702716 TTTGAAAAGATACTGTTTTCGGGT 57.297 33.333 5.40 0.00 43.81 5.28
288 289 5.682943 TGAAAAGATACTGTTTTCGGGTG 57.317 39.130 5.40 0.00 43.81 4.61
289 290 5.369833 TGAAAAGATACTGTTTTCGGGTGA 58.630 37.500 5.40 0.00 43.81 4.02
290 291 5.237779 TGAAAAGATACTGTTTTCGGGTGAC 59.762 40.000 5.40 0.00 43.81 3.67
291 292 4.618920 AAGATACTGTTTTCGGGTGACT 57.381 40.909 0.00 0.00 0.00 3.41
292 293 3.926616 AGATACTGTTTTCGGGTGACTG 58.073 45.455 0.00 0.00 38.41 3.51
293 294 3.576982 AGATACTGTTTTCGGGTGACTGA 59.423 43.478 0.00 0.00 46.33 3.41
299 300 3.544772 TCGGGTGACTGACTTGCA 58.455 55.556 0.00 0.00 42.04 4.08
311 312 4.494350 CTGACTTGCAGCTATTGTGTTT 57.506 40.909 0.00 0.00 37.90 2.83
312 313 4.470462 CTGACTTGCAGCTATTGTGTTTC 58.530 43.478 0.00 0.00 37.90 2.78
313 314 3.253188 TGACTTGCAGCTATTGTGTTTCC 59.747 43.478 0.00 0.00 0.00 3.13
314 315 3.221771 ACTTGCAGCTATTGTGTTTCCA 58.778 40.909 0.00 0.00 0.00 3.53
315 316 3.254166 ACTTGCAGCTATTGTGTTTCCAG 59.746 43.478 0.00 0.00 0.00 3.86
316 317 2.862541 TGCAGCTATTGTGTTTCCAGT 58.137 42.857 0.00 0.00 0.00 4.00
317 318 4.014569 TGCAGCTATTGTGTTTCCAGTA 57.985 40.909 0.00 0.00 0.00 2.74
318 319 4.393834 TGCAGCTATTGTGTTTCCAGTAA 58.606 39.130 0.00 0.00 0.00 2.24
319 320 5.009631 TGCAGCTATTGTGTTTCCAGTAAT 58.990 37.500 0.00 0.00 0.00 1.89
320 321 6.176896 TGCAGCTATTGTGTTTCCAGTAATA 58.823 36.000 0.00 0.00 0.00 0.98
321 322 6.093495 TGCAGCTATTGTGTTTCCAGTAATAC 59.907 38.462 0.00 0.00 0.00 1.89
322 323 6.316390 GCAGCTATTGTGTTTCCAGTAATACT 59.684 38.462 0.00 0.00 0.00 2.12
323 324 7.677276 GCAGCTATTGTGTTTCCAGTAATACTG 60.677 40.741 13.20 13.20 45.53 2.74
324 325 6.316390 AGCTATTGTGTTTCCAGTAATACTGC 59.684 38.462 14.60 2.24 44.63 4.40
325 326 5.545658 ATTGTGTTTCCAGTAATACTGCG 57.454 39.130 14.60 8.42 44.63 5.18
326 327 3.997762 TGTGTTTCCAGTAATACTGCGT 58.002 40.909 14.60 0.00 44.63 5.24
327 328 5.136816 TGTGTTTCCAGTAATACTGCGTA 57.863 39.130 14.60 0.12 44.63 4.42
328 329 5.726397 TGTGTTTCCAGTAATACTGCGTAT 58.274 37.500 14.60 0.00 44.63 3.06
329 330 5.579119 TGTGTTTCCAGTAATACTGCGTATG 59.421 40.000 14.60 1.48 44.63 2.39
330 331 5.579511 GTGTTTCCAGTAATACTGCGTATGT 59.420 40.000 14.60 0.00 44.63 2.29
331 332 5.579119 TGTTTCCAGTAATACTGCGTATGTG 59.421 40.000 14.60 0.11 44.63 3.21
332 333 4.316205 TCCAGTAATACTGCGTATGTGG 57.684 45.455 14.60 0.14 44.63 4.17
333 334 3.069016 TCCAGTAATACTGCGTATGTGGG 59.931 47.826 14.60 0.00 44.63 4.61
334 335 3.181469 CCAGTAATACTGCGTATGTGGGT 60.181 47.826 14.60 0.00 44.63 4.51
335 336 4.038282 CCAGTAATACTGCGTATGTGGGTA 59.962 45.833 14.60 0.00 44.63 3.69
336 337 5.279306 CCAGTAATACTGCGTATGTGGGTAT 60.279 44.000 14.60 0.00 44.63 2.73
337 338 6.071784 CCAGTAATACTGCGTATGTGGGTATA 60.072 42.308 14.60 0.00 44.63 1.47
338 339 7.027760 CAGTAATACTGCGTATGTGGGTATAG 58.972 42.308 7.55 0.00 39.62 1.31
339 340 5.401531 AATACTGCGTATGTGGGTATAGG 57.598 43.478 2.68 0.00 0.00 2.57
340 341 2.674420 ACTGCGTATGTGGGTATAGGT 58.326 47.619 0.00 0.00 0.00 3.08
341 342 3.036091 ACTGCGTATGTGGGTATAGGTT 58.964 45.455 0.00 0.00 0.00 3.50
342 343 3.181469 ACTGCGTATGTGGGTATAGGTTG 60.181 47.826 0.00 0.00 0.00 3.77
343 344 2.140717 GCGTATGTGGGTATAGGTTGC 58.859 52.381 0.00 0.00 0.00 4.17
344 345 2.224209 GCGTATGTGGGTATAGGTTGCT 60.224 50.000 0.00 0.00 0.00 3.91
345 346 3.390135 CGTATGTGGGTATAGGTTGCTG 58.610 50.000 0.00 0.00 0.00 4.41
346 347 3.740115 GTATGTGGGTATAGGTTGCTGG 58.260 50.000 0.00 0.00 0.00 4.85
347 348 1.959710 TGTGGGTATAGGTTGCTGGA 58.040 50.000 0.00 0.00 0.00 3.86
348 349 2.487775 TGTGGGTATAGGTTGCTGGAT 58.512 47.619 0.00 0.00 0.00 3.41
349 350 3.659841 TGTGGGTATAGGTTGCTGGATA 58.340 45.455 0.00 0.00 0.00 2.59
350 351 3.646162 TGTGGGTATAGGTTGCTGGATAG 59.354 47.826 0.00 0.00 0.00 2.08
351 352 3.646637 GTGGGTATAGGTTGCTGGATAGT 59.353 47.826 0.00 0.00 0.00 2.12
352 353 3.646162 TGGGTATAGGTTGCTGGATAGTG 59.354 47.826 0.00 0.00 0.00 2.74
353 354 3.008049 GGGTATAGGTTGCTGGATAGTGG 59.992 52.174 0.00 0.00 0.00 4.00
354 355 3.901844 GGTATAGGTTGCTGGATAGTGGA 59.098 47.826 0.00 0.00 0.00 4.02
355 356 4.262506 GGTATAGGTTGCTGGATAGTGGAC 60.263 50.000 0.00 0.00 0.00 4.02
356 357 0.537188 AGGTTGCTGGATAGTGGACG 59.463 55.000 0.00 0.00 0.00 4.79
357 358 1.090052 GGTTGCTGGATAGTGGACGC 61.090 60.000 0.00 0.00 0.00 5.19
358 359 1.153647 TTGCTGGATAGTGGACGCG 60.154 57.895 3.53 3.53 0.00 6.01
359 360 2.279517 GCTGGATAGTGGACGCGG 60.280 66.667 12.47 0.00 0.00 6.46
360 361 3.077519 GCTGGATAGTGGACGCGGT 62.078 63.158 12.47 0.00 0.00 5.68
361 362 1.226974 CTGGATAGTGGACGCGGTG 60.227 63.158 12.47 0.00 0.00 4.94
362 363 1.663379 CTGGATAGTGGACGCGGTGA 61.663 60.000 12.47 0.00 0.00 4.02
363 364 1.065928 GGATAGTGGACGCGGTGAG 59.934 63.158 12.47 0.00 0.00 3.51
364 365 1.589196 GATAGTGGACGCGGTGAGC 60.589 63.158 12.47 0.00 43.95 4.26
374 375 2.747855 CGGTGAGCAGGGAAAGGC 60.748 66.667 0.00 0.00 0.00 4.35
375 376 2.747855 GGTGAGCAGGGAAAGGCG 60.748 66.667 0.00 0.00 34.54 5.52
376 377 2.032681 GTGAGCAGGGAAAGGCGT 59.967 61.111 0.00 0.00 34.54 5.68
377 378 2.032528 TGAGCAGGGAAAGGCGTG 59.967 61.111 0.00 0.00 34.54 5.34
378 379 3.435186 GAGCAGGGAAAGGCGTGC 61.435 66.667 0.00 0.00 36.10 5.34
381 382 3.726517 CAGGGAAAGGCGTGCGTG 61.727 66.667 0.00 0.00 0.00 5.34
384 385 4.025401 GGAAAGGCGTGCGTGGTG 62.025 66.667 0.00 0.00 0.00 4.17
385 386 4.683334 GAAAGGCGTGCGTGGTGC 62.683 66.667 0.00 0.00 46.70 5.01
391 392 4.088762 CGTGCGTGGTGCCACATC 62.089 66.667 19.86 11.67 46.47 3.06
392 393 2.977456 GTGCGTGGTGCCACATCA 60.977 61.111 19.86 13.84 46.47 3.07
393 394 2.977456 TGCGTGGTGCCACATCAC 60.977 61.111 19.86 3.04 46.47 3.06
398 399 2.031919 GGTGCCACATCACCGTCA 59.968 61.111 0.00 0.00 45.95 4.35
399 400 2.034879 GGTGCCACATCACCGTCAG 61.035 63.158 0.00 0.00 45.95 3.51
400 401 2.358615 TGCCACATCACCGTCAGC 60.359 61.111 0.00 0.00 0.00 4.26
401 402 3.127533 GCCACATCACCGTCAGCC 61.128 66.667 0.00 0.00 0.00 4.85
402 403 2.347114 CCACATCACCGTCAGCCA 59.653 61.111 0.00 0.00 0.00 4.75
403 404 1.302431 CCACATCACCGTCAGCCAA 60.302 57.895 0.00 0.00 0.00 4.52
404 405 0.677731 CCACATCACCGTCAGCCAAT 60.678 55.000 0.00 0.00 0.00 3.16
405 406 0.729116 CACATCACCGTCAGCCAATC 59.271 55.000 0.00 0.00 0.00 2.67
406 407 0.392998 ACATCACCGTCAGCCAATCC 60.393 55.000 0.00 0.00 0.00 3.01
407 408 1.153369 ATCACCGTCAGCCAATCCG 60.153 57.895 0.00 0.00 0.00 4.18
408 409 1.899437 ATCACCGTCAGCCAATCCGT 61.899 55.000 0.00 0.00 0.00 4.69
409 410 2.047274 ACCGTCAGCCAATCCGTG 60.047 61.111 0.00 0.00 0.00 4.94
410 411 3.499737 CCGTCAGCCAATCCGTGC 61.500 66.667 0.00 0.00 0.00 5.34
411 412 2.741985 CGTCAGCCAATCCGTGCA 60.742 61.111 0.00 0.00 0.00 4.57
412 413 2.108514 CGTCAGCCAATCCGTGCAT 61.109 57.895 0.00 0.00 0.00 3.96
413 414 1.430632 GTCAGCCAATCCGTGCATG 59.569 57.895 0.00 0.00 0.00 4.06
414 415 2.103538 CAGCCAATCCGTGCATGC 59.896 61.111 11.82 11.82 0.00 4.06
415 416 3.142838 AGCCAATCCGTGCATGCC 61.143 61.111 16.68 5.63 0.00 4.40
416 417 4.557605 GCCAATCCGTGCATGCCG 62.558 66.667 16.68 17.54 0.00 5.69
417 418 2.823593 CCAATCCGTGCATGCCGA 60.824 61.111 24.22 14.22 0.00 5.54
418 419 2.404789 CAATCCGTGCATGCCGAC 59.595 61.111 24.22 13.04 0.00 4.79
419 420 2.046411 AATCCGTGCATGCCGACA 60.046 55.556 24.22 13.68 0.00 4.35
420 421 2.398554 AATCCGTGCATGCCGACAC 61.399 57.895 24.22 12.04 0.00 3.67
421 422 2.803155 AATCCGTGCATGCCGACACT 62.803 55.000 24.22 7.88 34.58 3.55
422 423 2.803155 ATCCGTGCATGCCGACACTT 62.803 55.000 24.22 6.53 34.58 3.16
423 424 2.616330 CCGTGCATGCCGACACTTT 61.616 57.895 24.22 0.00 34.58 2.66
424 425 1.282570 CGTGCATGCCGACACTTTT 59.717 52.632 16.68 0.00 34.58 2.27
425 426 0.725784 CGTGCATGCCGACACTTTTC 60.726 55.000 16.68 0.00 34.58 2.29
426 427 0.593128 GTGCATGCCGACACTTTTCT 59.407 50.000 16.68 0.00 33.92 2.52
427 428 1.804151 GTGCATGCCGACACTTTTCTA 59.196 47.619 16.68 0.00 33.92 2.10
428 429 2.225491 GTGCATGCCGACACTTTTCTAA 59.775 45.455 16.68 0.00 33.92 2.10
429 430 2.881513 TGCATGCCGACACTTTTCTAAA 59.118 40.909 16.68 0.00 0.00 1.85
430 431 3.234386 GCATGCCGACACTTTTCTAAAC 58.766 45.455 6.36 0.00 0.00 2.01
431 432 3.058224 GCATGCCGACACTTTTCTAAACT 60.058 43.478 6.36 0.00 0.00 2.66
432 433 4.556699 GCATGCCGACACTTTTCTAAACTT 60.557 41.667 6.36 0.00 0.00 2.66
433 434 5.519722 CATGCCGACACTTTTCTAAACTTT 58.480 37.500 0.00 0.00 0.00 2.66
434 435 5.164606 TGCCGACACTTTTCTAAACTTTC 57.835 39.130 0.00 0.00 0.00 2.62
435 436 4.209112 GCCGACACTTTTCTAAACTTTCG 58.791 43.478 0.00 0.00 0.00 3.46
436 437 4.260497 GCCGACACTTTTCTAAACTTTCGT 60.260 41.667 0.00 0.00 0.00 3.85
437 438 5.728621 GCCGACACTTTTCTAAACTTTCGTT 60.729 40.000 0.00 0.00 34.03 3.85
438 439 6.509997 GCCGACACTTTTCTAAACTTTCGTTA 60.510 38.462 0.00 0.00 31.86 3.18
439 440 6.842780 CCGACACTTTTCTAAACTTTCGTTAC 59.157 38.462 0.00 0.00 31.86 2.50
440 441 7.254218 CCGACACTTTTCTAAACTTTCGTTACT 60.254 37.037 0.00 0.00 31.86 2.24
441 442 7.786572 CGACACTTTTCTAAACTTTCGTTACTC 59.213 37.037 0.00 0.00 31.86 2.59
442 443 8.483307 ACACTTTTCTAAACTTTCGTTACTCA 57.517 30.769 0.00 0.00 31.86 3.41
443 444 8.385858 ACACTTTTCTAAACTTTCGTTACTCAC 58.614 33.333 0.00 0.00 31.86 3.51
444 445 8.385111 CACTTTTCTAAACTTTCGTTACTCACA 58.615 33.333 0.00 0.00 31.86 3.58
445 446 9.106070 ACTTTTCTAAACTTTCGTTACTCACAT 57.894 29.630 0.00 0.00 31.86 3.21
446 447 9.370126 CTTTTCTAAACTTTCGTTACTCACATG 57.630 33.333 0.00 0.00 31.86 3.21
447 448 7.416154 TTCTAAACTTTCGTTACTCACATGG 57.584 36.000 0.00 0.00 31.86 3.66
448 449 5.929992 TCTAAACTTTCGTTACTCACATGGG 59.070 40.000 0.00 0.00 31.86 4.00
449 450 4.345859 AACTTTCGTTACTCACATGGGA 57.654 40.909 0.00 0.00 0.00 4.37
450 451 3.926616 ACTTTCGTTACTCACATGGGAG 58.073 45.455 23.68 23.68 40.79 4.30
451 452 2.380084 TTCGTTACTCACATGGGAGC 57.620 50.000 25.15 7.93 38.50 4.70
452 453 1.557099 TCGTTACTCACATGGGAGCT 58.443 50.000 25.15 14.18 38.50 4.09
453 454 2.730382 TCGTTACTCACATGGGAGCTA 58.270 47.619 25.15 13.18 38.50 3.32
454 455 2.426024 TCGTTACTCACATGGGAGCTAC 59.574 50.000 25.15 20.01 38.50 3.58
455 456 2.481449 CGTTACTCACATGGGAGCTACC 60.481 54.545 25.15 8.55 38.50 3.18
467 468 2.187163 GCTACCCCGAGCTGGAAC 59.813 66.667 0.00 0.00 42.00 3.62
468 469 2.359967 GCTACCCCGAGCTGGAACT 61.360 63.158 0.00 0.00 42.00 3.01
469 470 1.817209 CTACCCCGAGCTGGAACTC 59.183 63.158 0.00 0.00 42.00 3.01
470 471 0.684805 CTACCCCGAGCTGGAACTCT 60.685 60.000 0.00 0.00 42.00 3.24
471 472 0.970937 TACCCCGAGCTGGAACTCTG 60.971 60.000 0.00 0.00 42.00 3.35
472 473 2.125350 CCCGAGCTGGAACTCTGC 60.125 66.667 0.00 0.00 42.00 4.26
473 474 2.125350 CCGAGCTGGAACTCTGCC 60.125 66.667 0.00 0.00 42.00 4.85
474 475 2.659016 CGAGCTGGAACTCTGCCA 59.341 61.111 0.00 0.00 40.63 4.92
475 476 1.004560 CGAGCTGGAACTCTGCCAA 60.005 57.895 0.00 0.00 40.63 4.52
476 477 1.018226 CGAGCTGGAACTCTGCCAAG 61.018 60.000 0.00 0.00 40.63 3.61
477 478 0.036022 GAGCTGGAACTCTGCCAAGT 59.964 55.000 0.00 0.00 40.63 3.16
478 479 0.250640 AGCTGGAACTCTGCCAAGTG 60.251 55.000 0.00 0.00 40.63 3.16
479 480 1.860484 GCTGGAACTCTGCCAAGTGC 61.860 60.000 0.00 0.00 41.77 4.40
480 481 1.228245 TGGAACTCTGCCAAGTGCC 60.228 57.895 5.76 5.76 44.39 5.01
481 482 1.228245 GGAACTCTGCCAAGTGCCA 60.228 57.895 7.57 0.00 43.67 4.92
482 483 0.823356 GGAACTCTGCCAAGTGCCAA 60.823 55.000 7.57 0.00 43.67 4.52
483 484 0.595095 GAACTCTGCCAAGTGCCAAG 59.405 55.000 0.00 0.00 40.16 3.61
484 485 0.183492 AACTCTGCCAAGTGCCAAGA 59.817 50.000 0.00 0.00 40.16 3.02
485 486 0.183492 ACTCTGCCAAGTGCCAAGAA 59.817 50.000 0.00 0.00 40.16 2.52
486 487 0.879765 CTCTGCCAAGTGCCAAGAAG 59.120 55.000 0.00 0.00 40.16 2.85
487 488 0.538057 TCTGCCAAGTGCCAAGAAGG 60.538 55.000 0.00 0.00 40.16 3.46
488 489 0.825010 CTGCCAAGTGCCAAGAAGGT 60.825 55.000 0.00 0.00 40.61 3.50
489 490 1.108727 TGCCAAGTGCCAAGAAGGTG 61.109 55.000 0.00 0.00 40.61 4.00
490 491 1.809567 GCCAAGTGCCAAGAAGGTGG 61.810 60.000 0.00 0.00 42.05 4.61
491 492 0.468029 CCAAGTGCCAAGAAGGTGGT 60.468 55.000 0.00 0.00 41.12 4.16
492 493 0.670162 CAAGTGCCAAGAAGGTGGTG 59.330 55.000 0.00 0.00 41.12 4.17
493 494 0.468029 AAGTGCCAAGAAGGTGGTGG 60.468 55.000 0.00 0.00 41.12 4.61
494 495 1.903404 GTGCCAAGAAGGTGGTGGG 60.903 63.158 0.00 0.00 41.12 4.61
495 496 2.991540 GCCAAGAAGGTGGTGGGC 60.992 66.667 0.00 0.00 41.12 5.36
496 497 2.283173 CCAAGAAGGTGGTGGGCC 60.283 66.667 0.00 0.00 33.63 5.80
497 498 2.672996 CAAGAAGGTGGTGGGCCG 60.673 66.667 0.00 0.00 37.67 6.13
498 499 4.660938 AAGAAGGTGGTGGGCCGC 62.661 66.667 9.05 9.05 44.31 6.53
513 514 3.049674 CGCTGCACCGTTGTCCAT 61.050 61.111 0.00 0.00 0.00 3.41
514 515 1.739929 CGCTGCACCGTTGTCCATA 60.740 57.895 0.00 0.00 0.00 2.74
515 516 1.695893 CGCTGCACCGTTGTCCATAG 61.696 60.000 0.00 0.00 0.00 2.23
516 517 0.391130 GCTGCACCGTTGTCCATAGA 60.391 55.000 0.00 0.00 0.00 1.98
517 518 1.943968 GCTGCACCGTTGTCCATAGAA 60.944 52.381 0.00 0.00 0.00 2.10
518 519 1.732259 CTGCACCGTTGTCCATAGAAC 59.268 52.381 0.00 0.00 0.00 3.01
883 884 1.477700 CCAATAACTCCGGGACACGTA 59.522 52.381 0.00 0.00 42.24 3.57
886 887 0.881118 TAACTCCGGGACACGTACAC 59.119 55.000 0.00 0.00 42.24 2.90
887 888 1.108727 AACTCCGGGACACGTACACA 61.109 55.000 0.00 0.00 42.24 3.72
890 891 0.822944 TCCGGGACACGTACACAAGA 60.823 55.000 0.00 0.00 42.24 3.02
894 895 2.352421 CGGGACACGTACACAAGAAGAT 60.352 50.000 0.00 0.00 37.93 2.40
976 978 2.353323 GTTAGTTCCACCGTCCATTCC 58.647 52.381 0.00 0.00 0.00 3.01
985 987 1.635663 CCGTCCATTCCAACAGTCGC 61.636 60.000 0.00 0.00 0.00 5.19
1063 1065 0.244994 AAGCAGCTGTCCTACTGTCG 59.755 55.000 16.64 0.00 36.26 4.35
1102 1108 1.201181 AGCTAGCTAATCGATCAGCCG 59.799 52.381 17.69 9.74 38.61 5.52
1103 1109 1.734047 GCTAGCTAATCGATCAGCCGG 60.734 57.143 17.16 10.94 38.61 6.13
1104 1110 0.243907 TAGCTAATCGATCAGCCGGC 59.756 55.000 21.89 21.89 38.61 6.13
1105 1111 2.375766 GCTAATCGATCAGCCGGCG 61.376 63.158 23.20 16.49 0.00 6.46
1352 1361 0.653636 CCTCGTACGCTCTCTCTCAC 59.346 60.000 11.24 0.00 0.00 3.51
1367 1387 7.273320 TCTCTCTCACCATAACTAATTACCG 57.727 40.000 0.00 0.00 0.00 4.02
1374 1394 5.043248 ACCATAACTAATTACCGTACGCAC 58.957 41.667 10.49 0.00 0.00 5.34
1388 1408 4.042398 CGTACGCACATATAGCTCTTGTT 58.958 43.478 0.52 0.00 0.00 2.83
1398 1418 1.905354 GCTCTTGTTGGGCTTGGCT 60.905 57.895 0.00 0.00 0.00 4.75
1399 1419 0.609131 GCTCTTGTTGGGCTTGGCTA 60.609 55.000 0.00 0.00 0.00 3.93
1400 1420 1.909700 CTCTTGTTGGGCTTGGCTAA 58.090 50.000 0.00 0.00 0.00 3.09
1615 1635 0.824109 CCACCACTTCGGCTAGATCA 59.176 55.000 0.00 0.00 39.03 2.92
1746 1769 1.195448 CGTGATTTTCTCTGCGTGCTT 59.805 47.619 0.00 0.00 0.00 3.91
1755 1778 1.446099 CTGCGTGCTTAGCTTCCGA 60.446 57.895 5.60 0.00 35.28 4.55
1773 1797 1.383523 GAGTGCTGAATAAGTGGGGC 58.616 55.000 0.00 0.00 0.00 5.80
1897 1924 2.550830 ATGCAAGTCCTCACGAAACT 57.449 45.000 0.00 0.00 0.00 2.66
1928 1955 5.163374 GGCCCATCTATCTCAAAATTTGCTT 60.163 40.000 0.00 0.00 0.00 3.91
1932 1959 9.525409 CCCATCTATCTCAAAATTTGCTTTAAG 57.475 33.333 0.00 0.00 0.00 1.85
1950 1977 6.859112 TTTAAGAGCAACTCTATCAGACCT 57.141 37.500 0.00 0.00 40.28 3.85
1951 1978 6.458232 TTAAGAGCAACTCTATCAGACCTC 57.542 41.667 0.00 0.00 40.28 3.85
1952 1979 2.948979 AGAGCAACTCTATCAGACCTCG 59.051 50.000 0.00 0.00 39.28 4.63
1953 1980 2.685897 GAGCAACTCTATCAGACCTCGT 59.314 50.000 0.00 0.00 0.00 4.18
1954 1981 3.878103 GAGCAACTCTATCAGACCTCGTA 59.122 47.826 0.00 0.00 0.00 3.43
1955 1982 4.270834 AGCAACTCTATCAGACCTCGTAA 58.729 43.478 0.00 0.00 0.00 3.18
1956 1983 4.705507 AGCAACTCTATCAGACCTCGTAAA 59.294 41.667 0.00 0.00 0.00 2.01
1957 1984 5.185249 AGCAACTCTATCAGACCTCGTAAAA 59.815 40.000 0.00 0.00 0.00 1.52
1958 1985 6.043411 GCAACTCTATCAGACCTCGTAAAAT 58.957 40.000 0.00 0.00 0.00 1.82
1959 1986 7.068348 AGCAACTCTATCAGACCTCGTAAAATA 59.932 37.037 0.00 0.00 0.00 1.40
1960 1987 7.167801 GCAACTCTATCAGACCTCGTAAAATAC 59.832 40.741 0.00 0.00 0.00 1.89
1961 1988 7.274603 ACTCTATCAGACCTCGTAAAATACC 57.725 40.000 0.00 0.00 0.00 2.73
1962 1989 6.017275 ACTCTATCAGACCTCGTAAAATACCG 60.017 42.308 0.00 0.00 0.00 4.02
1963 1990 6.057533 TCTATCAGACCTCGTAAAATACCGA 58.942 40.000 0.00 0.00 0.00 4.69
1964 1991 4.361451 TCAGACCTCGTAAAATACCGAC 57.639 45.455 0.00 0.00 0.00 4.79
1965 1992 3.129287 TCAGACCTCGTAAAATACCGACC 59.871 47.826 0.00 0.00 0.00 4.79
1966 1993 2.428530 AGACCTCGTAAAATACCGACCC 59.571 50.000 0.00 0.00 0.00 4.46
1967 1994 1.134946 ACCTCGTAAAATACCGACCCG 59.865 52.381 0.00 0.00 0.00 5.28
1968 1995 1.203065 CTCGTAAAATACCGACCCGC 58.797 55.000 0.00 0.00 0.00 6.13
1969 1996 0.529833 TCGTAAAATACCGACCCGCA 59.470 50.000 0.00 0.00 0.00 5.69
1970 1997 1.067283 TCGTAAAATACCGACCCGCAA 60.067 47.619 0.00 0.00 0.00 4.85
1971 1998 1.731160 CGTAAAATACCGACCCGCAAA 59.269 47.619 0.00 0.00 0.00 3.68
1972 1999 2.159234 CGTAAAATACCGACCCGCAAAA 59.841 45.455 0.00 0.00 0.00 2.44
1973 2000 2.710220 AAAATACCGACCCGCAAAAC 57.290 45.000 0.00 0.00 0.00 2.43
1974 2001 1.900245 AAATACCGACCCGCAAAACT 58.100 45.000 0.00 0.00 0.00 2.66
1975 2002 1.445871 AATACCGACCCGCAAAACTC 58.554 50.000 0.00 0.00 0.00 3.01
1976 2003 0.738412 ATACCGACCCGCAAAACTCG 60.738 55.000 0.00 0.00 0.00 4.18
1977 2004 2.086251 TACCGACCCGCAAAACTCGT 62.086 55.000 0.00 0.00 0.00 4.18
1978 2005 2.248835 CCGACCCGCAAAACTCGTT 61.249 57.895 0.00 0.00 0.00 3.85
1979 2006 1.644913 CGACCCGCAAAACTCGTTT 59.355 52.632 0.00 0.00 0.00 3.60
1980 2007 0.860533 CGACCCGCAAAACTCGTTTA 59.139 50.000 0.00 0.00 31.63 2.01
1981 2008 1.397567 CGACCCGCAAAACTCGTTTAC 60.398 52.381 0.00 0.00 31.63 2.01
1982 2009 1.598601 GACCCGCAAAACTCGTTTACA 59.401 47.619 0.00 0.00 31.63 2.41
1983 2010 1.600485 ACCCGCAAAACTCGTTTACAG 59.400 47.619 0.00 0.00 31.63 2.74
1984 2011 1.600485 CCCGCAAAACTCGTTTACAGT 59.400 47.619 0.00 0.00 31.63 3.55
1985 2012 2.032426 CCCGCAAAACTCGTTTACAGTT 59.968 45.455 0.00 0.00 35.51 3.16
1986 2013 3.285745 CCGCAAAACTCGTTTACAGTTC 58.714 45.455 0.00 0.00 32.71 3.01
1987 2014 2.955799 CGCAAAACTCGTTTACAGTTCG 59.044 45.455 0.00 0.00 32.71 3.95
1988 2015 2.712466 GCAAAACTCGTTTACAGTTCGC 59.288 45.455 0.00 0.00 32.71 4.70
1989 2016 2.916735 AAACTCGTTTACAGTTCGCG 57.083 45.000 0.00 0.00 32.71 5.87
1990 2017 2.124011 AACTCGTTTACAGTTCGCGA 57.876 45.000 3.71 3.71 27.00 5.87
1991 2018 2.124011 ACTCGTTTACAGTTCGCGAA 57.876 45.000 19.38 19.38 0.00 4.70
1992 2019 2.462889 ACTCGTTTACAGTTCGCGAAA 58.537 42.857 25.24 4.71 0.00 3.46
1993 2020 2.859538 ACTCGTTTACAGTTCGCGAAAA 59.140 40.909 25.24 11.59 0.00 2.29
1994 2021 3.306703 ACTCGTTTACAGTTCGCGAAAAA 59.693 39.130 25.24 17.20 0.00 1.94
1995 2022 3.596319 TCGTTTACAGTTCGCGAAAAAC 58.404 40.909 25.24 25.65 0.00 2.43
1996 2023 3.061831 TCGTTTACAGTTCGCGAAAAACA 59.938 39.130 30.67 21.04 0.00 2.83
1997 2024 3.413142 CGTTTACAGTTCGCGAAAAACAG 59.587 43.478 30.67 23.32 0.00 3.16
1998 2025 4.336932 GTTTACAGTTCGCGAAAAACAGT 58.663 39.130 28.64 21.05 32.15 3.55
1999 2026 4.603231 TTACAGTTCGCGAAAAACAGTT 57.397 36.364 25.24 6.37 30.33 3.16
2000 2027 3.481112 ACAGTTCGCGAAAAACAGTTT 57.519 38.095 25.24 0.00 0.00 2.66
2001 2028 3.828786 ACAGTTCGCGAAAAACAGTTTT 58.171 36.364 25.24 5.37 39.70 2.43
2002 2029 3.606346 ACAGTTCGCGAAAAACAGTTTTG 59.394 39.130 25.24 8.45 37.07 2.44
2003 2030 2.596862 AGTTCGCGAAAAACAGTTTTGC 59.403 40.909 25.24 9.32 37.07 3.68
2008 2035 1.849829 CGAAAAACAGTTTTGCGGTCC 59.150 47.619 25.94 6.42 45.64 4.46
2009 2036 2.478879 CGAAAAACAGTTTTGCGGTCCT 60.479 45.455 25.94 4.17 45.64 3.85
2010 2037 2.863401 AAAACAGTTTTGCGGTCCTC 57.137 45.000 10.62 0.00 0.00 3.71
2011 2038 0.661020 AAACAGTTTTGCGGTCCTCG 59.339 50.000 0.00 0.00 42.76 4.63
2024 2051 0.389948 GTCCTCGCGTCTCCACAAAT 60.390 55.000 5.77 0.00 0.00 2.32
2052 2079 3.011708 ACCCCAGATTAGCCAATTTGACT 59.988 43.478 0.00 0.00 29.71 3.41
2054 2081 4.019174 CCCAGATTAGCCAATTTGACTGT 58.981 43.478 0.00 0.00 29.71 3.55
2059 2086 7.318141 CAGATTAGCCAATTTGACTGTGATTT 58.682 34.615 0.00 0.00 29.71 2.17
2083 2110 6.720343 TCGACAATTGAGTTCAAATTCGAAA 58.280 32.000 13.59 0.00 39.37 3.46
2127 2154 7.272515 GCGCAAATAAAAGCATAGTTTTCTACA 59.727 33.333 0.30 0.00 35.02 2.74
2140 2167 8.751335 CATAGTTTTCTACAACAAACGCAAAAT 58.249 29.630 0.00 0.00 37.85 1.82
2221 2248 0.179100 ATGATCTTCACTCCGCACCG 60.179 55.000 0.00 0.00 0.00 4.94
2414 3184 1.371558 GAAAGGTGCGTGGAGTCCT 59.628 57.895 11.33 0.00 0.00 3.85
2415 3185 0.606604 GAAAGGTGCGTGGAGTCCTA 59.393 55.000 11.33 0.00 0.00 2.94
2494 3264 0.537143 TTGGCGGTTTGAGATGTGCT 60.537 50.000 0.00 0.00 0.00 4.40
2534 3304 1.521457 CGCGCTCCAAGCCTTGATA 60.521 57.895 5.89 0.00 38.18 2.15
2759 3536 0.298707 CGGCAATGACATCGTTCGAG 59.701 55.000 0.80 0.00 0.00 4.04
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 0.609957 AGGCATGCAGCTTGCTACAA 60.610 50.000 27.26 0.00 45.31 2.41
2 3 1.001764 AGGCATGCAGCTTGCTACA 60.002 52.632 27.26 0.00 45.31 2.74
4 5 3.914094 CAGGCATGCAGCTTGCTA 58.086 55.556 27.26 0.00 43.71 3.49
19 20 4.748144 GACCCAGGCAAGCCCCAG 62.748 72.222 7.62 0.00 36.58 4.45
22 23 3.015145 TAGGACCCAGGCAAGCCC 61.015 66.667 7.62 0.00 36.58 5.19
23 24 2.592308 CTAGGACCCAGGCAAGCC 59.408 66.667 2.02 2.02 0.00 4.35
24 25 2.124529 GCTAGGACCCAGGCAAGC 60.125 66.667 0.00 0.00 0.00 4.01
25 26 2.300967 TGGCTAGGACCCAGGCAAG 61.301 63.158 13.81 0.00 44.65 4.01
26 27 2.204074 TGGCTAGGACCCAGGCAA 60.204 61.111 13.81 0.00 44.65 4.52
27 28 1.214305 ATTTGGCTAGGACCCAGGCA 61.214 55.000 12.21 12.21 45.79 4.75
28 29 0.466372 GATTTGGCTAGGACCCAGGC 60.466 60.000 6.54 6.54 38.97 4.85
29 30 0.183731 GGATTTGGCTAGGACCCAGG 59.816 60.000 0.00 0.00 33.13 4.45
30 31 1.216990 AGGATTTGGCTAGGACCCAG 58.783 55.000 0.00 0.00 33.13 4.45
31 32 2.408565 CTAGGATTTGGCTAGGACCCA 58.591 52.381 0.00 0.00 0.00 4.51
32 33 1.072489 GCTAGGATTTGGCTAGGACCC 59.928 57.143 0.00 0.00 0.00 4.46
33 34 1.270358 CGCTAGGATTTGGCTAGGACC 60.270 57.143 0.00 0.00 0.00 4.46
34 35 1.874320 GCGCTAGGATTTGGCTAGGAC 60.874 57.143 0.00 0.00 0.00 3.85
35 36 0.393077 GCGCTAGGATTTGGCTAGGA 59.607 55.000 0.00 0.00 0.00 2.94
36 37 0.603975 GGCGCTAGGATTTGGCTAGG 60.604 60.000 7.64 0.00 0.00 3.02
37 38 0.946221 CGGCGCTAGGATTTGGCTAG 60.946 60.000 7.64 0.00 0.00 3.42
38 39 1.069090 CGGCGCTAGGATTTGGCTA 59.931 57.895 7.64 0.00 0.00 3.93
39 40 2.203070 CGGCGCTAGGATTTGGCT 60.203 61.111 7.64 0.00 0.00 4.75
40 41 2.989055 TAGCGGCGCTAGGATTTGGC 62.989 60.000 35.39 0.42 40.44 4.52
41 42 1.069090 TAGCGGCGCTAGGATTTGG 59.931 57.895 35.39 0.00 40.44 3.28
42 43 0.249489 AGTAGCGGCGCTAGGATTTG 60.249 55.000 38.90 0.00 42.11 2.32
43 44 0.249489 CAGTAGCGGCGCTAGGATTT 60.249 55.000 38.90 20.11 42.11 2.17
44 45 1.107538 TCAGTAGCGGCGCTAGGATT 61.108 55.000 38.90 22.45 42.11 3.01
45 46 1.528542 TCAGTAGCGGCGCTAGGAT 60.529 57.895 38.90 25.32 42.11 3.24
46 47 2.124445 TCAGTAGCGGCGCTAGGA 60.124 61.111 38.90 33.08 42.11 2.94
47 48 2.026301 GTCAGTAGCGGCGCTAGG 59.974 66.667 38.90 31.57 42.11 3.02
48 49 2.352457 CGTCAGTAGCGGCGCTAG 60.352 66.667 38.90 28.15 42.11 3.42
49 50 2.820922 TCGTCAGTAGCGGCGCTA 60.821 61.111 35.39 35.39 40.44 4.26
50 51 4.477975 GTCGTCAGTAGCGGCGCT 62.478 66.667 37.84 37.84 43.41 5.92
53 54 2.277373 CTCGTCGTCAGTAGCGGC 60.277 66.667 0.00 0.00 0.00 6.53
54 55 2.403987 CCTCGTCGTCAGTAGCGG 59.596 66.667 0.00 0.00 0.00 5.52
55 56 1.437772 ATCCCTCGTCGTCAGTAGCG 61.438 60.000 0.00 0.00 0.00 4.26
56 57 1.590932 TATCCCTCGTCGTCAGTAGC 58.409 55.000 0.00 0.00 0.00 3.58
57 58 4.832590 AAATATCCCTCGTCGTCAGTAG 57.167 45.455 0.00 0.00 0.00 2.57
58 59 5.587388 AAAAATATCCCTCGTCGTCAGTA 57.413 39.130 0.00 0.00 0.00 2.74
59 60 4.467198 AAAAATATCCCTCGTCGTCAGT 57.533 40.909 0.00 0.00 0.00 3.41
60 61 4.743644 GGTAAAAATATCCCTCGTCGTCAG 59.256 45.833 0.00 0.00 0.00 3.51
61 62 4.441913 GGGTAAAAATATCCCTCGTCGTCA 60.442 45.833 0.00 0.00 38.29 4.35
62 63 4.053983 GGGTAAAAATATCCCTCGTCGTC 58.946 47.826 0.00 0.00 38.29 4.20
63 64 3.451902 TGGGTAAAAATATCCCTCGTCGT 59.548 43.478 0.00 0.00 41.58 4.34
64 65 4.062677 TGGGTAAAAATATCCCTCGTCG 57.937 45.455 0.00 0.00 41.58 5.12
65 66 5.187687 TGTTGGGTAAAAATATCCCTCGTC 58.812 41.667 0.00 0.00 41.58 4.20
66 67 5.182169 TGTTGGGTAAAAATATCCCTCGT 57.818 39.130 0.00 0.00 41.58 4.18
67 68 5.009610 CCATGTTGGGTAAAAATATCCCTCG 59.990 44.000 0.00 0.00 41.58 4.63
68 69 6.405278 CCATGTTGGGTAAAAATATCCCTC 57.595 41.667 0.00 0.00 41.58 4.30
83 84 1.985662 ATGCTGCCACCCATGTTGG 60.986 57.895 6.28 6.28 37.25 3.77
84 85 1.216977 CATGCTGCCACCCATGTTG 59.783 57.895 0.00 0.00 35.33 3.33
85 86 0.324923 ATCATGCTGCCACCCATGTT 60.325 50.000 0.00 0.00 39.74 2.71
86 87 0.754217 GATCATGCTGCCACCCATGT 60.754 55.000 0.00 0.00 39.74 3.21
87 88 0.467474 AGATCATGCTGCCACCCATG 60.467 55.000 0.00 0.00 40.05 3.66
88 89 0.260816 AAGATCATGCTGCCACCCAT 59.739 50.000 0.00 0.00 0.00 4.00
89 90 0.918258 TAAGATCATGCTGCCACCCA 59.082 50.000 0.00 0.00 0.00 4.51
90 91 1.602311 CTAAGATCATGCTGCCACCC 58.398 55.000 0.00 0.00 0.00 4.61
91 92 1.141657 TCCTAAGATCATGCTGCCACC 59.858 52.381 0.00 0.00 0.00 4.61
92 93 2.627515 TCCTAAGATCATGCTGCCAC 57.372 50.000 0.00 0.00 0.00 5.01
93 94 3.483421 CAATCCTAAGATCATGCTGCCA 58.517 45.455 0.00 0.00 0.00 4.92
94 95 2.818432 CCAATCCTAAGATCATGCTGCC 59.182 50.000 0.00 0.00 0.00 4.85
95 96 2.818432 CCCAATCCTAAGATCATGCTGC 59.182 50.000 0.00 0.00 0.00 5.25
96 97 2.818432 GCCCAATCCTAAGATCATGCTG 59.182 50.000 0.00 0.00 0.00 4.41
97 98 2.224967 GGCCCAATCCTAAGATCATGCT 60.225 50.000 0.00 0.00 0.00 3.79
98 99 2.165998 GGCCCAATCCTAAGATCATGC 58.834 52.381 0.00 0.00 0.00 4.06
99 100 3.152341 GTGGCCCAATCCTAAGATCATG 58.848 50.000 0.00 0.00 0.00 3.07
100 101 2.108952 GGTGGCCCAATCCTAAGATCAT 59.891 50.000 0.00 0.00 0.00 2.45
101 102 1.494721 GGTGGCCCAATCCTAAGATCA 59.505 52.381 0.00 0.00 0.00 2.92
102 103 1.543429 CGGTGGCCCAATCCTAAGATC 60.543 57.143 0.00 0.00 0.00 2.75
103 104 0.474184 CGGTGGCCCAATCCTAAGAT 59.526 55.000 0.00 0.00 0.00 2.40
104 105 0.912487 ACGGTGGCCCAATCCTAAGA 60.912 55.000 0.00 0.00 0.00 2.10
105 106 0.463833 GACGGTGGCCCAATCCTAAG 60.464 60.000 0.00 0.00 0.00 2.18
106 107 1.605453 GACGGTGGCCCAATCCTAA 59.395 57.895 0.00 0.00 0.00 2.69
107 108 2.727392 CGACGGTGGCCCAATCCTA 61.727 63.158 0.00 0.00 0.00 2.94
108 109 4.096003 CGACGGTGGCCCAATCCT 62.096 66.667 0.00 0.00 0.00 3.24
110 111 2.319890 ATACCGACGGTGGCCCAATC 62.320 60.000 29.55 0.00 36.19 2.67
111 112 1.049855 TATACCGACGGTGGCCCAAT 61.050 55.000 29.55 15.68 36.19 3.16
112 113 1.678598 CTATACCGACGGTGGCCCAA 61.679 60.000 29.55 8.72 36.19 4.12
113 114 2.043147 TATACCGACGGTGGCCCA 60.043 61.111 29.55 9.54 36.19 5.36
114 115 2.732658 CTATACCGACGGTGGCCC 59.267 66.667 29.55 0.00 36.19 5.80
115 116 2.732658 CCTATACCGACGGTGGCC 59.267 66.667 29.55 0.00 36.19 5.36
116 117 2.028631 GCCTATACCGACGGTGGC 59.971 66.667 29.55 27.36 35.63 5.01
117 118 2.008268 AACGCCTATACCGACGGTGG 62.008 60.000 29.55 22.07 36.19 4.61
118 119 0.662619 TAACGCCTATACCGACGGTG 59.337 55.000 29.55 13.64 36.19 4.94
119 120 1.609208 ATAACGCCTATACCGACGGT 58.391 50.000 25.14 25.14 40.16 4.83
120 121 2.483877 TGTATAACGCCTATACCGACGG 59.516 50.000 13.61 13.61 41.21 4.79
121 122 3.433274 TCTGTATAACGCCTATACCGACG 59.567 47.826 10.99 0.00 41.21 5.12
122 123 5.557891 ATCTGTATAACGCCTATACCGAC 57.442 43.478 10.99 0.00 41.21 4.79
123 124 7.986889 TGTATATCTGTATAACGCCTATACCGA 59.013 37.037 10.99 10.49 41.21 4.69
124 125 8.146479 TGTATATCTGTATAACGCCTATACCG 57.854 38.462 10.99 6.60 41.21 4.02
130 131 9.998106 AGAAAAATGTATATCTGTATAACGCCT 57.002 29.630 0.00 0.00 0.00 5.52
145 146 9.705290 AAAGGCGAAATACAAAGAAAAATGTAT 57.295 25.926 0.00 0.00 42.88 2.29
146 147 9.535878 AAAAGGCGAAATACAAAGAAAAATGTA 57.464 25.926 0.00 0.00 36.54 2.29
147 148 8.432110 AAAAGGCGAAATACAAAGAAAAATGT 57.568 26.923 0.00 0.00 0.00 2.71
170 171 4.932268 AGTCTTCACGACAAACGAAAAA 57.068 36.364 0.00 0.00 45.32 1.94
171 172 4.932268 AAGTCTTCACGACAAACGAAAA 57.068 36.364 0.00 0.00 45.32 2.29
172 173 4.932268 AAAGTCTTCACGACAAACGAAA 57.068 36.364 0.00 0.00 45.32 3.46
173 174 6.415702 CAATAAAGTCTTCACGACAAACGAA 58.584 36.000 0.00 0.00 45.32 3.85
174 175 5.050634 CCAATAAAGTCTTCACGACAAACGA 60.051 40.000 0.00 0.00 45.32 3.85
175 176 5.137403 CCAATAAAGTCTTCACGACAAACG 58.863 41.667 0.00 0.00 45.32 3.60
176 177 4.909880 GCCAATAAAGTCTTCACGACAAAC 59.090 41.667 0.00 0.00 45.32 2.93
177 178 4.819630 AGCCAATAAAGTCTTCACGACAAA 59.180 37.500 0.00 0.00 45.32 2.83
178 179 4.213270 CAGCCAATAAAGTCTTCACGACAA 59.787 41.667 0.00 0.00 45.32 3.18
179 180 3.745975 CAGCCAATAAAGTCTTCACGACA 59.254 43.478 0.00 0.00 45.32 4.35
180 181 3.424962 GCAGCCAATAAAGTCTTCACGAC 60.425 47.826 0.00 0.00 43.17 4.34
181 182 2.742053 GCAGCCAATAAAGTCTTCACGA 59.258 45.455 0.00 0.00 0.00 4.35
182 183 2.474526 CGCAGCCAATAAAGTCTTCACG 60.475 50.000 0.00 0.00 0.00 4.35
183 184 2.484264 ACGCAGCCAATAAAGTCTTCAC 59.516 45.455 0.00 0.00 0.00 3.18
184 185 2.483877 CACGCAGCCAATAAAGTCTTCA 59.516 45.455 0.00 0.00 0.00 3.02
185 186 2.729156 GCACGCAGCCAATAAAGTCTTC 60.729 50.000 0.00 0.00 37.23 2.87
186 187 1.200020 GCACGCAGCCAATAAAGTCTT 59.800 47.619 0.00 0.00 37.23 3.01
187 188 0.804989 GCACGCAGCCAATAAAGTCT 59.195 50.000 0.00 0.00 37.23 3.24
188 189 0.521291 TGCACGCAGCCAATAAAGTC 59.479 50.000 0.00 0.00 44.83 3.01
189 190 1.133025 GATGCACGCAGCCAATAAAGT 59.867 47.619 0.00 0.00 44.83 2.66
190 191 1.402968 AGATGCACGCAGCCAATAAAG 59.597 47.619 3.22 0.00 44.83 1.85
191 192 1.462616 AGATGCACGCAGCCAATAAA 58.537 45.000 3.22 0.00 44.83 1.40
192 193 1.462616 AAGATGCACGCAGCCAATAA 58.537 45.000 3.22 0.00 44.83 1.40
193 194 2.212652 CTAAGATGCACGCAGCCAATA 58.787 47.619 3.22 0.00 44.83 1.90
194 195 1.019673 CTAAGATGCACGCAGCCAAT 58.980 50.000 3.22 0.00 44.83 3.16
195 196 0.321564 ACTAAGATGCACGCAGCCAA 60.322 50.000 3.22 0.00 44.83 4.52
196 197 0.321564 AACTAAGATGCACGCAGCCA 60.322 50.000 3.22 0.00 44.83 4.75
197 198 1.651987 TAACTAAGATGCACGCAGCC 58.348 50.000 3.22 0.00 44.83 4.85
198 199 3.244670 CATAACTAAGATGCACGCAGC 57.755 47.619 0.00 0.00 45.96 5.25
206 207 3.062763 CGGCCTCTGCATAACTAAGATG 58.937 50.000 0.00 0.00 40.13 2.90
207 208 2.037772 CCGGCCTCTGCATAACTAAGAT 59.962 50.000 0.00 0.00 40.13 2.40
208 209 1.412710 CCGGCCTCTGCATAACTAAGA 59.587 52.381 0.00 0.00 40.13 2.10
209 210 1.541233 CCCGGCCTCTGCATAACTAAG 60.541 57.143 0.00 0.00 40.13 2.18
210 211 0.468226 CCCGGCCTCTGCATAACTAA 59.532 55.000 0.00 0.00 40.13 2.24
211 212 0.689745 ACCCGGCCTCTGCATAACTA 60.690 55.000 0.00 0.00 40.13 2.24
212 213 1.995626 ACCCGGCCTCTGCATAACT 60.996 57.895 0.00 0.00 40.13 2.24
213 214 1.819632 CACCCGGCCTCTGCATAAC 60.820 63.158 0.00 0.00 40.13 1.89
214 215 0.978667 TACACCCGGCCTCTGCATAA 60.979 55.000 0.00 0.00 40.13 1.90
215 216 0.978667 TTACACCCGGCCTCTGCATA 60.979 55.000 0.00 0.00 40.13 3.14
216 217 1.635817 ATTACACCCGGCCTCTGCAT 61.636 55.000 0.00 0.00 40.13 3.96
217 218 0.978667 TATTACACCCGGCCTCTGCA 60.979 55.000 0.00 0.00 40.13 4.41
218 219 0.396811 ATATTACACCCGGCCTCTGC 59.603 55.000 0.00 0.00 0.00 4.26
219 220 2.930826 AATATTACACCCGGCCTCTG 57.069 50.000 0.00 0.00 0.00 3.35
220 221 5.128205 GTTTAAATATTACACCCGGCCTCT 58.872 41.667 0.00 0.00 0.00 3.69
221 222 4.276678 GGTTTAAATATTACACCCGGCCTC 59.723 45.833 0.00 0.00 0.00 4.70
222 223 4.079615 AGGTTTAAATATTACACCCGGCCT 60.080 41.667 0.00 0.00 0.00 5.19
223 224 4.209538 AGGTTTAAATATTACACCCGGCC 58.790 43.478 0.00 0.00 0.00 6.13
224 225 5.840243 AAGGTTTAAATATTACACCCGGC 57.160 39.130 0.00 0.00 0.00 6.13
235 236 9.368674 GGGCGCTTTATTTAAAAGGTTTAAATA 57.631 29.630 16.46 16.46 36.39 1.40
236 237 8.098286 AGGGCGCTTTATTTAAAAGGTTTAAAT 58.902 29.630 17.95 17.95 37.99 1.40
237 238 7.443477 AGGGCGCTTTATTTAAAAGGTTTAAA 58.557 30.769 7.64 8.03 0.00 1.52
238 239 6.995364 AGGGCGCTTTATTTAAAAGGTTTAA 58.005 32.000 7.64 0.00 0.00 1.52
239 240 6.593268 AGGGCGCTTTATTTAAAAGGTTTA 57.407 33.333 7.64 0.00 0.00 2.01
240 241 5.477607 AGGGCGCTTTATTTAAAAGGTTT 57.522 34.783 7.64 0.00 0.00 3.27
241 242 5.477607 AAGGGCGCTTTATTTAAAAGGTT 57.522 34.783 10.73 0.00 0.00 3.50
242 243 5.477607 AAAGGGCGCTTTATTTAAAAGGT 57.522 34.783 25.60 0.00 0.00 3.50
243 244 6.425417 TCAAAAAGGGCGCTTTATTTAAAAGG 59.575 34.615 26.79 8.42 0.00 3.11
244 245 7.414814 TCAAAAAGGGCGCTTTATTTAAAAG 57.585 32.000 26.79 11.78 0.00 2.27
245 246 7.787725 TTCAAAAAGGGCGCTTTATTTAAAA 57.212 28.000 26.79 13.71 0.00 1.52
246 247 7.787725 TTTCAAAAAGGGCGCTTTATTTAAA 57.212 28.000 26.79 20.45 0.00 1.52
247 248 7.711339 TCTTTTCAAAAAGGGCGCTTTATTTAA 59.289 29.630 26.79 16.95 44.22 1.52
248 249 7.210873 TCTTTTCAAAAAGGGCGCTTTATTTA 58.789 30.769 26.79 12.94 44.22 1.40
249 250 6.052360 TCTTTTCAAAAAGGGCGCTTTATTT 58.948 32.000 26.79 16.55 44.22 1.40
250 251 5.606505 TCTTTTCAAAAAGGGCGCTTTATT 58.393 33.333 26.79 19.23 44.22 1.40
251 252 5.208463 TCTTTTCAAAAAGGGCGCTTTAT 57.792 34.783 26.79 15.09 44.22 1.40
252 253 4.657436 TCTTTTCAAAAAGGGCGCTTTA 57.343 36.364 26.79 10.82 44.22 1.85
253 254 3.535280 TCTTTTCAAAAAGGGCGCTTT 57.465 38.095 21.93 21.93 44.22 3.51
254 255 3.751479 ATCTTTTCAAAAAGGGCGCTT 57.249 38.095 10.73 10.73 44.22 4.68
255 256 3.826729 AGTATCTTTTCAAAAAGGGCGCT 59.173 39.130 7.64 0.00 44.22 5.92
256 257 3.920412 CAGTATCTTTTCAAAAAGGGCGC 59.080 43.478 13.68 0.00 44.22 6.53
257 258 5.121221 ACAGTATCTTTTCAAAAAGGGCG 57.879 39.130 13.68 3.61 44.22 6.13
258 259 7.306574 CGAAAACAGTATCTTTTCAAAAAGGGC 60.307 37.037 13.68 6.12 44.22 5.19
259 260 7.169140 CCGAAAACAGTATCTTTTCAAAAAGGG 59.831 37.037 13.68 1.41 44.22 3.95
260 261 7.169140 CCCGAAAACAGTATCTTTTCAAAAAGG 59.831 37.037 13.68 2.29 44.22 3.11
261 262 7.704899 ACCCGAAAACAGTATCTTTTCAAAAAG 59.295 33.333 8.60 8.60 45.17 2.27
262 263 7.489757 CACCCGAAAACAGTATCTTTTCAAAAA 59.510 33.333 4.90 0.00 37.44 1.94
263 264 6.975772 CACCCGAAAACAGTATCTTTTCAAAA 59.024 34.615 4.90 0.00 37.44 2.44
264 265 6.319152 TCACCCGAAAACAGTATCTTTTCAAA 59.681 34.615 4.90 0.00 37.44 2.69
265 266 5.823570 TCACCCGAAAACAGTATCTTTTCAA 59.176 36.000 4.90 0.00 37.44 2.69
266 267 5.237779 GTCACCCGAAAACAGTATCTTTTCA 59.762 40.000 4.90 0.00 37.44 2.69
267 268 5.469084 AGTCACCCGAAAACAGTATCTTTTC 59.531 40.000 0.00 0.00 35.24 2.29
268 269 5.238650 CAGTCACCCGAAAACAGTATCTTTT 59.761 40.000 0.00 0.00 0.00 2.27
269 270 4.755123 CAGTCACCCGAAAACAGTATCTTT 59.245 41.667 0.00 0.00 0.00 2.52
270 271 4.039973 TCAGTCACCCGAAAACAGTATCTT 59.960 41.667 0.00 0.00 0.00 2.40
271 272 3.576982 TCAGTCACCCGAAAACAGTATCT 59.423 43.478 0.00 0.00 0.00 1.98
272 273 3.678548 GTCAGTCACCCGAAAACAGTATC 59.321 47.826 0.00 0.00 0.00 2.24
273 274 3.323979 AGTCAGTCACCCGAAAACAGTAT 59.676 43.478 0.00 0.00 0.00 2.12
274 275 2.696707 AGTCAGTCACCCGAAAACAGTA 59.303 45.455 0.00 0.00 0.00 2.74
275 276 1.485066 AGTCAGTCACCCGAAAACAGT 59.515 47.619 0.00 0.00 0.00 3.55
276 277 2.240493 AGTCAGTCACCCGAAAACAG 57.760 50.000 0.00 0.00 0.00 3.16
277 278 2.285083 CAAGTCAGTCACCCGAAAACA 58.715 47.619 0.00 0.00 0.00 2.83
278 279 1.002792 GCAAGTCAGTCACCCGAAAAC 60.003 52.381 0.00 0.00 0.00 2.43
279 280 1.305201 GCAAGTCAGTCACCCGAAAA 58.695 50.000 0.00 0.00 0.00 2.29
280 281 0.179234 TGCAAGTCAGTCACCCGAAA 59.821 50.000 0.00 0.00 0.00 3.46
281 282 0.249868 CTGCAAGTCAGTCACCCGAA 60.250 55.000 0.00 0.00 38.02 4.30
282 283 1.367471 CTGCAAGTCAGTCACCCGA 59.633 57.895 0.00 0.00 38.02 5.14
283 284 2.320587 GCTGCAAGTCAGTCACCCG 61.321 63.158 0.00 0.00 44.66 5.28
284 285 0.321671 TAGCTGCAAGTCAGTCACCC 59.678 55.000 1.02 0.00 44.66 4.61
285 286 2.393271 ATAGCTGCAAGTCAGTCACC 57.607 50.000 1.02 0.00 44.66 4.02
286 287 3.070018 ACAATAGCTGCAAGTCAGTCAC 58.930 45.455 1.02 0.00 44.66 3.67
287 288 3.069289 CACAATAGCTGCAAGTCAGTCA 58.931 45.455 1.02 0.00 44.66 3.41
288 289 3.070018 ACACAATAGCTGCAAGTCAGTC 58.930 45.455 1.02 0.00 44.66 3.51
289 290 3.131709 ACACAATAGCTGCAAGTCAGT 57.868 42.857 1.02 0.00 44.66 3.41
290 291 4.470462 GAAACACAATAGCTGCAAGTCAG 58.530 43.478 1.02 0.00 45.62 3.51
291 292 3.253188 GGAAACACAATAGCTGCAAGTCA 59.747 43.478 1.02 0.00 35.30 3.41
292 293 3.253188 TGGAAACACAATAGCTGCAAGTC 59.747 43.478 1.02 0.00 31.89 3.01
293 294 3.221771 TGGAAACACAATAGCTGCAAGT 58.778 40.909 1.02 0.00 31.89 3.16
294 295 3.254166 ACTGGAAACACAATAGCTGCAAG 59.746 43.478 1.02 0.00 35.60 4.01
295 296 3.221771 ACTGGAAACACAATAGCTGCAA 58.778 40.909 1.02 0.00 35.60 4.08
296 297 2.862541 ACTGGAAACACAATAGCTGCA 58.137 42.857 1.02 0.00 35.60 4.41
297 298 5.567138 ATTACTGGAAACACAATAGCTGC 57.433 39.130 0.00 0.00 35.60 5.25
298 299 7.677276 GCAGTATTACTGGAAACACAATAGCTG 60.677 40.741 22.11 0.00 46.01 4.24
299 300 6.316390 GCAGTATTACTGGAAACACAATAGCT 59.684 38.462 22.11 0.00 46.01 3.32
300 301 6.487103 GCAGTATTACTGGAAACACAATAGC 58.513 40.000 22.11 2.78 46.01 2.97
301 302 6.312918 ACGCAGTATTACTGGAAACACAATAG 59.687 38.462 22.11 0.00 46.01 1.73
302 303 6.167685 ACGCAGTATTACTGGAAACACAATA 58.832 36.000 22.11 0.00 46.01 1.90
303 304 5.001232 ACGCAGTATTACTGGAAACACAAT 58.999 37.500 22.11 0.00 46.01 2.71
304 305 4.382291 ACGCAGTATTACTGGAAACACAA 58.618 39.130 22.11 0.00 46.01 3.33
305 306 3.997762 ACGCAGTATTACTGGAAACACA 58.002 40.909 22.11 0.00 46.01 3.72
321 322 3.390135 CAACCTATACCCACATACGCAG 58.610 50.000 0.00 0.00 0.00 5.18
322 323 2.484065 GCAACCTATACCCACATACGCA 60.484 50.000 0.00 0.00 0.00 5.24
323 324 2.140717 GCAACCTATACCCACATACGC 58.859 52.381 0.00 0.00 0.00 4.42
324 325 3.390135 CAGCAACCTATACCCACATACG 58.610 50.000 0.00 0.00 0.00 3.06
325 326 3.389983 TCCAGCAACCTATACCCACATAC 59.610 47.826 0.00 0.00 0.00 2.39
326 327 3.659841 TCCAGCAACCTATACCCACATA 58.340 45.455 0.00 0.00 0.00 2.29
327 328 2.487775 TCCAGCAACCTATACCCACAT 58.512 47.619 0.00 0.00 0.00 3.21
328 329 1.959710 TCCAGCAACCTATACCCACA 58.040 50.000 0.00 0.00 0.00 4.17
329 330 3.646637 ACTATCCAGCAACCTATACCCAC 59.353 47.826 0.00 0.00 0.00 4.61
330 331 3.646162 CACTATCCAGCAACCTATACCCA 59.354 47.826 0.00 0.00 0.00 4.51
331 332 3.008049 CCACTATCCAGCAACCTATACCC 59.992 52.174 0.00 0.00 0.00 3.69
332 333 3.901844 TCCACTATCCAGCAACCTATACC 59.098 47.826 0.00 0.00 0.00 2.73
333 334 4.558898 CGTCCACTATCCAGCAACCTATAC 60.559 50.000 0.00 0.00 0.00 1.47
334 335 3.572682 CGTCCACTATCCAGCAACCTATA 59.427 47.826 0.00 0.00 0.00 1.31
335 336 2.365617 CGTCCACTATCCAGCAACCTAT 59.634 50.000 0.00 0.00 0.00 2.57
336 337 1.754803 CGTCCACTATCCAGCAACCTA 59.245 52.381 0.00 0.00 0.00 3.08
337 338 0.537188 CGTCCACTATCCAGCAACCT 59.463 55.000 0.00 0.00 0.00 3.50
338 339 1.090052 GCGTCCACTATCCAGCAACC 61.090 60.000 0.00 0.00 0.00 3.77
339 340 1.421410 CGCGTCCACTATCCAGCAAC 61.421 60.000 0.00 0.00 0.00 4.17
340 341 1.153647 CGCGTCCACTATCCAGCAA 60.154 57.895 0.00 0.00 0.00 3.91
341 342 2.494445 CGCGTCCACTATCCAGCA 59.506 61.111 0.00 0.00 0.00 4.41
342 343 2.279517 CCGCGTCCACTATCCAGC 60.280 66.667 4.92 0.00 0.00 4.85
343 344 1.226974 CACCGCGTCCACTATCCAG 60.227 63.158 4.92 0.00 0.00 3.86
344 345 1.663379 CTCACCGCGTCCACTATCCA 61.663 60.000 4.92 0.00 0.00 3.41
345 346 1.065928 CTCACCGCGTCCACTATCC 59.934 63.158 4.92 0.00 0.00 2.59
346 347 1.589196 GCTCACCGCGTCCACTATC 60.589 63.158 4.92 0.00 0.00 2.08
347 348 2.284798 CTGCTCACCGCGTCCACTAT 62.285 60.000 4.92 0.00 43.27 2.12
348 349 2.986979 TGCTCACCGCGTCCACTA 60.987 61.111 4.92 0.00 43.27 2.74
349 350 4.363990 CTGCTCACCGCGTCCACT 62.364 66.667 4.92 0.00 43.27 4.00
353 354 3.876589 TTTCCCTGCTCACCGCGTC 62.877 63.158 4.92 0.00 43.27 5.19
354 355 3.883744 CTTTCCCTGCTCACCGCGT 62.884 63.158 4.92 0.00 43.27 6.01
355 356 3.121030 CTTTCCCTGCTCACCGCG 61.121 66.667 0.00 0.00 43.27 6.46
356 357 2.747855 CCTTTCCCTGCTCACCGC 60.748 66.667 0.00 0.00 39.77 5.68
357 358 2.747855 GCCTTTCCCTGCTCACCG 60.748 66.667 0.00 0.00 0.00 4.94
358 359 2.747855 CGCCTTTCCCTGCTCACC 60.748 66.667 0.00 0.00 0.00 4.02
359 360 2.032681 ACGCCTTTCCCTGCTCAC 59.967 61.111 0.00 0.00 0.00 3.51
360 361 2.032528 CACGCCTTTCCCTGCTCA 59.967 61.111 0.00 0.00 0.00 4.26
361 362 3.435186 GCACGCCTTTCCCTGCTC 61.435 66.667 0.00 0.00 0.00 4.26
364 365 3.726517 CACGCACGCCTTTCCCTG 61.727 66.667 0.00 0.00 0.00 4.45
367 368 4.025401 CACCACGCACGCCTTTCC 62.025 66.667 0.00 0.00 0.00 3.13
368 369 4.683334 GCACCACGCACGCCTTTC 62.683 66.667 0.00 0.00 41.79 2.62
382 383 2.680913 GCTGACGGTGATGTGGCAC 61.681 63.158 11.55 11.55 38.05 5.01
383 384 2.358615 GCTGACGGTGATGTGGCA 60.359 61.111 0.00 0.00 0.00 4.92
384 385 3.127533 GGCTGACGGTGATGTGGC 61.128 66.667 0.00 0.00 0.00 5.01
385 386 0.677731 ATTGGCTGACGGTGATGTGG 60.678 55.000 0.00 0.00 0.00 4.17
386 387 0.729116 GATTGGCTGACGGTGATGTG 59.271 55.000 0.00 0.00 0.00 3.21
387 388 0.392998 GGATTGGCTGACGGTGATGT 60.393 55.000 0.00 0.00 0.00 3.06
388 389 1.431488 CGGATTGGCTGACGGTGATG 61.431 60.000 0.00 0.00 0.00 3.07
389 390 1.153369 CGGATTGGCTGACGGTGAT 60.153 57.895 0.00 0.00 0.00 3.06
390 391 2.264480 CGGATTGGCTGACGGTGA 59.736 61.111 0.00 0.00 0.00 4.02
391 392 2.047274 ACGGATTGGCTGACGGTG 60.047 61.111 0.00 0.00 0.00 4.94
392 393 2.047274 CACGGATTGGCTGACGGT 60.047 61.111 0.00 0.00 0.00 4.83
393 394 3.499737 GCACGGATTGGCTGACGG 61.500 66.667 0.00 0.00 0.00 4.79
394 395 2.108514 ATGCACGGATTGGCTGACG 61.109 57.895 0.00 0.00 0.00 4.35
395 396 1.430632 CATGCACGGATTGGCTGAC 59.569 57.895 0.00 0.00 0.00 3.51
396 397 2.409055 GCATGCACGGATTGGCTGA 61.409 57.895 14.21 0.00 0.00 4.26
397 398 2.103538 GCATGCACGGATTGGCTG 59.896 61.111 14.21 0.00 0.00 4.85
398 399 3.142838 GGCATGCACGGATTGGCT 61.143 61.111 21.36 0.00 33.51 4.75
399 400 4.557605 CGGCATGCACGGATTGGC 62.558 66.667 21.36 0.00 0.00 4.52
400 401 2.823593 TCGGCATGCACGGATTGG 60.824 61.111 21.36 0.00 0.00 3.16
401 402 2.397754 TGTCGGCATGCACGGATTG 61.398 57.895 21.36 0.00 0.00 2.67
402 403 2.046411 TGTCGGCATGCACGGATT 60.046 55.556 21.36 0.00 0.00 3.01
403 404 2.803155 AAGTGTCGGCATGCACGGAT 62.803 55.000 21.36 5.23 40.26 4.18
404 405 3.529341 AAGTGTCGGCATGCACGGA 62.529 57.895 21.36 10.62 40.26 4.69
405 406 2.128853 AAAAGTGTCGGCATGCACGG 62.129 55.000 21.36 8.19 40.26 4.94
406 407 0.725784 GAAAAGTGTCGGCATGCACG 60.726 55.000 21.36 19.82 40.26 5.34
407 408 0.593128 AGAAAAGTGTCGGCATGCAC 59.407 50.000 21.36 10.78 35.98 4.57
408 409 2.177394 TAGAAAAGTGTCGGCATGCA 57.823 45.000 21.36 0.00 0.00 3.96
409 410 3.058224 AGTTTAGAAAAGTGTCGGCATGC 60.058 43.478 9.90 9.90 0.00 4.06
410 411 4.749245 AGTTTAGAAAAGTGTCGGCATG 57.251 40.909 0.00 0.00 0.00 4.06
411 412 5.560183 CGAAAGTTTAGAAAAGTGTCGGCAT 60.560 40.000 10.57 0.00 0.00 4.40
412 413 4.260456 CGAAAGTTTAGAAAAGTGTCGGCA 60.260 41.667 10.57 0.00 0.00 5.69
413 414 4.209112 CGAAAGTTTAGAAAAGTGTCGGC 58.791 43.478 10.57 0.00 0.00 5.54
414 415 5.399604 ACGAAAGTTTAGAAAAGTGTCGG 57.600 39.130 18.87 6.35 46.40 4.79
425 426 9.203244 GCTCCCATGTGAGTAACGAAAGTTTAG 62.203 44.444 7.06 0.00 42.26 1.85
426 427 7.507425 GCTCCCATGTGAGTAACGAAAGTTTA 61.507 42.308 7.06 0.00 42.26 2.01
427 428 6.766720 GCTCCCATGTGAGTAACGAAAGTTT 61.767 44.000 7.06 0.00 42.26 2.66
428 429 5.334252 GCTCCCATGTGAGTAACGAAAGTT 61.334 45.833 7.06 0.00 43.98 2.66
429 430 3.864921 GCTCCCATGTGAGTAACGAAAGT 60.865 47.826 7.06 0.00 39.54 2.66
430 431 2.673368 GCTCCCATGTGAGTAACGAAAG 59.327 50.000 7.06 0.00 34.74 2.62
431 432 2.301870 AGCTCCCATGTGAGTAACGAAA 59.698 45.455 7.06 0.00 34.74 3.46
432 433 1.899814 AGCTCCCATGTGAGTAACGAA 59.100 47.619 7.06 0.00 34.74 3.85
433 434 1.557099 AGCTCCCATGTGAGTAACGA 58.443 50.000 7.06 0.00 34.74 3.85
434 435 2.481449 GGTAGCTCCCATGTGAGTAACG 60.481 54.545 7.06 0.00 34.74 3.18
435 436 3.180891 GGTAGCTCCCATGTGAGTAAC 57.819 52.381 7.06 5.48 34.74 2.50
450 451 2.187163 GTTCCAGCTCGGGGTAGC 59.813 66.667 0.00 0.00 43.11 3.58
451 452 0.684805 AGAGTTCCAGCTCGGGGTAG 60.685 60.000 0.00 0.00 40.26 3.18
452 453 0.970937 CAGAGTTCCAGCTCGGGGTA 60.971 60.000 0.00 0.00 40.26 3.69
453 454 2.120718 AGAGTTCCAGCTCGGGGT 59.879 61.111 2.86 0.00 40.26 4.95
454 455 2.581354 CAGAGTTCCAGCTCGGGG 59.419 66.667 2.86 0.00 40.26 5.73
455 456 2.125350 GCAGAGTTCCAGCTCGGG 60.125 66.667 2.86 0.00 40.26 5.14
456 457 2.125350 GGCAGAGTTCCAGCTCGG 60.125 66.667 0.00 0.00 40.26 4.63
457 458 1.004560 TTGGCAGAGTTCCAGCTCG 60.005 57.895 0.00 0.00 40.26 5.03
458 459 0.036022 ACTTGGCAGAGTTCCAGCTC 59.964 55.000 0.00 0.00 34.66 4.09
459 460 0.250640 CACTTGGCAGAGTTCCAGCT 60.251 55.000 0.49 0.00 34.66 4.24
460 461 1.860484 GCACTTGGCAGAGTTCCAGC 61.860 60.000 0.49 0.00 43.97 4.85
461 462 2.251600 GCACTTGGCAGAGTTCCAG 58.748 57.895 0.49 0.00 43.97 3.86
462 463 1.993701 TGGCACTTGGCAGAGTTCCA 61.994 55.000 13.78 13.78 46.12 3.53
463 464 1.228245 TGGCACTTGGCAGAGTTCC 60.228 57.895 0.49 10.04 46.12 3.62
464 465 4.481195 TGGCACTTGGCAGAGTTC 57.519 55.556 0.49 0.00 46.12 3.01
471 472 1.662044 CACCTTCTTGGCACTTGGC 59.338 57.895 0.00 0.00 40.22 4.52
472 473 0.468029 ACCACCTTCTTGGCACTTGG 60.468 55.000 0.00 0.00 40.77 3.61
473 474 0.670162 CACCACCTTCTTGGCACTTG 59.330 55.000 0.00 0.00 40.77 3.16
474 475 0.468029 CCACCACCTTCTTGGCACTT 60.468 55.000 0.00 0.00 40.77 3.16
475 476 1.151450 CCACCACCTTCTTGGCACT 59.849 57.895 0.00 0.00 40.77 4.40
476 477 1.903404 CCCACCACCTTCTTGGCAC 60.903 63.158 0.00 0.00 40.77 5.01
477 478 2.520458 CCCACCACCTTCTTGGCA 59.480 61.111 0.00 0.00 40.77 4.92
478 479 2.991540 GCCCACCACCTTCTTGGC 60.992 66.667 0.00 0.00 40.77 4.52
479 480 2.283173 GGCCCACCACCTTCTTGG 60.283 66.667 0.00 0.00 43.04 3.61
480 481 2.672996 CGGCCCACCACCTTCTTG 60.673 66.667 0.00 0.00 34.57 3.02
481 482 4.660938 GCGGCCCACCACCTTCTT 62.661 66.667 0.00 0.00 34.57 2.52
500 501 0.719465 CGTTCTATGGACAACGGTGC 59.281 55.000 0.00 0.00 41.36 5.01
860 861 0.539986 TGTCCCGGAGTTATTGGAGC 59.460 55.000 0.73 0.00 0.00 4.70
868 869 1.108727 TGTGTACGTGTCCCGGAGTT 61.109 55.000 0.73 0.00 42.24 3.01
869 870 1.108727 TTGTGTACGTGTCCCGGAGT 61.109 55.000 0.73 0.00 42.24 3.85
883 884 6.166279 ACATACGATTGTGATCTTCTTGTGT 58.834 36.000 0.00 0.00 0.00 3.72
929 930 2.101917 CGTTCCACGGGTTATGGATACT 59.898 50.000 0.00 0.00 45.71 2.12
976 978 0.176680 ATAGGCTGAGGCGACTGTTG 59.823 55.000 0.00 0.00 44.43 3.33
1026 1028 3.636300 TGCTTATCTGCTTGGTTTGTGTT 59.364 39.130 0.00 0.00 0.00 3.32
1063 1065 2.159653 GCTAGCACTTGTGTGTGTATGC 60.160 50.000 10.63 0.00 45.44 3.14
1105 1111 3.764160 CTTCTCCTCCGCCATGGCC 62.764 68.421 30.79 13.37 37.80 5.36
1243 1252 1.359475 GGTGATCCGCTCGTACTCC 59.641 63.158 0.00 0.00 0.00 3.85
1352 1361 5.042593 TGTGCGTACGGTAATTAGTTATGG 58.957 41.667 18.39 0.00 0.00 2.74
1367 1387 4.209288 CCAACAAGAGCTATATGTGCGTAC 59.791 45.833 0.00 0.00 35.28 3.67
1374 1394 3.567164 CCAAGCCCAACAAGAGCTATATG 59.433 47.826 0.00 0.00 35.30 1.78
1388 1408 2.513738 AGTCCATTATTAGCCAAGCCCA 59.486 45.455 0.00 0.00 0.00 5.36
1746 1769 3.447586 ACTTATTCAGCACTCGGAAGCTA 59.552 43.478 4.54 0.00 39.50 3.32
1755 1778 0.995024 AGCCCCACTTATTCAGCACT 59.005 50.000 0.00 0.00 0.00 4.40
1897 1924 4.314522 TGAGATAGATGGGCCACAAAAA 57.685 40.909 9.28 0.00 0.00 1.94
1928 1955 5.066634 CGAGGTCTGATAGAGTTGCTCTTAA 59.933 44.000 3.87 0.00 41.50 1.85
1932 1959 2.685897 ACGAGGTCTGATAGAGTTGCTC 59.314 50.000 0.00 0.00 0.00 4.26
1933 1960 2.729194 ACGAGGTCTGATAGAGTTGCT 58.271 47.619 0.00 0.00 0.00 3.91
1934 1961 4.634184 TTACGAGGTCTGATAGAGTTGC 57.366 45.455 0.00 0.00 0.00 4.17
1935 1962 7.648510 GGTATTTTACGAGGTCTGATAGAGTTG 59.351 40.741 0.00 0.00 0.00 3.16
1936 1963 7.468357 CGGTATTTTACGAGGTCTGATAGAGTT 60.468 40.741 0.00 0.00 0.00 3.01
1937 1964 6.017275 CGGTATTTTACGAGGTCTGATAGAGT 60.017 42.308 0.00 0.00 0.00 3.24
1938 1965 6.204301 TCGGTATTTTACGAGGTCTGATAGAG 59.796 42.308 0.00 0.00 34.67 2.43
1939 1966 6.017605 GTCGGTATTTTACGAGGTCTGATAGA 60.018 42.308 0.00 0.00 40.09 1.98
1940 1967 6.141462 GTCGGTATTTTACGAGGTCTGATAG 58.859 44.000 0.00 0.00 40.09 2.08
1941 1968 5.009010 GGTCGGTATTTTACGAGGTCTGATA 59.991 44.000 0.00 0.00 40.09 2.15
1942 1969 4.202090 GGTCGGTATTTTACGAGGTCTGAT 60.202 45.833 0.00 0.00 40.09 2.90
1943 1970 3.129287 GGTCGGTATTTTACGAGGTCTGA 59.871 47.826 0.00 0.00 40.09 3.27
1944 1971 3.442100 GGTCGGTATTTTACGAGGTCTG 58.558 50.000 0.00 0.00 40.09 3.51
1945 1972 2.428530 GGGTCGGTATTTTACGAGGTCT 59.571 50.000 0.00 0.00 40.09 3.85
1946 1973 2.796032 CGGGTCGGTATTTTACGAGGTC 60.796 54.545 0.00 0.00 40.09 3.85
1947 1974 1.134946 CGGGTCGGTATTTTACGAGGT 59.865 52.381 0.00 0.00 40.09 3.85
1948 1975 1.843992 CGGGTCGGTATTTTACGAGG 58.156 55.000 0.00 0.00 40.09 4.63
1949 1976 1.203065 GCGGGTCGGTATTTTACGAG 58.797 55.000 0.00 0.00 40.09 4.18
1950 1977 0.529833 TGCGGGTCGGTATTTTACGA 59.470 50.000 0.00 0.00 36.68 3.43
1951 1978 1.357907 TTGCGGGTCGGTATTTTACG 58.642 50.000 0.00 0.00 0.00 3.18
1952 1979 3.189080 AGTTTTGCGGGTCGGTATTTTAC 59.811 43.478 0.00 0.00 0.00 2.01
1953 1980 3.410508 AGTTTTGCGGGTCGGTATTTTA 58.589 40.909 0.00 0.00 0.00 1.52
1954 1981 2.227149 GAGTTTTGCGGGTCGGTATTTT 59.773 45.455 0.00 0.00 0.00 1.82
1955 1982 1.808343 GAGTTTTGCGGGTCGGTATTT 59.192 47.619 0.00 0.00 0.00 1.40
1956 1983 1.445871 GAGTTTTGCGGGTCGGTATT 58.554 50.000 0.00 0.00 0.00 1.89
1957 1984 0.738412 CGAGTTTTGCGGGTCGGTAT 60.738 55.000 0.00 0.00 0.00 2.73
1958 1985 1.373246 CGAGTTTTGCGGGTCGGTA 60.373 57.895 0.00 0.00 0.00 4.02
1959 1986 2.663852 CGAGTTTTGCGGGTCGGT 60.664 61.111 0.00 0.00 0.00 4.69
1960 1987 1.778027 AAACGAGTTTTGCGGGTCGG 61.778 55.000 0.00 0.00 36.74 4.79
1961 1988 0.860533 TAAACGAGTTTTGCGGGTCG 59.139 50.000 6.53 0.00 38.40 4.79
1962 1989 1.598601 TGTAAACGAGTTTTGCGGGTC 59.401 47.619 6.53 0.00 32.71 4.46
1963 1990 1.600485 CTGTAAACGAGTTTTGCGGGT 59.400 47.619 6.53 0.00 33.65 5.28
1964 1991 1.600485 ACTGTAAACGAGTTTTGCGGG 59.400 47.619 6.53 1.99 39.76 6.13
1965 1992 3.285745 GAACTGTAAACGAGTTTTGCGG 58.714 45.455 6.53 8.01 40.90 5.69
1966 1993 2.955799 CGAACTGTAAACGAGTTTTGCG 59.044 45.455 6.53 0.00 33.71 4.85
1967 1994 2.712466 GCGAACTGTAAACGAGTTTTGC 59.288 45.455 6.53 2.05 33.71 3.68
1968 1995 2.955799 CGCGAACTGTAAACGAGTTTTG 59.044 45.455 0.00 1.52 33.71 2.44
1969 1996 2.859538 TCGCGAACTGTAAACGAGTTTT 59.140 40.909 6.20 0.00 33.71 2.43
1970 1997 2.462889 TCGCGAACTGTAAACGAGTTT 58.537 42.857 6.20 6.46 33.71 2.66
1971 1998 2.124011 TCGCGAACTGTAAACGAGTT 57.876 45.000 6.20 0.00 36.33 3.01
1972 1999 2.124011 TTCGCGAACTGTAAACGAGT 57.876 45.000 19.38 0.00 33.84 4.18
1973 2000 3.492725 TTTTCGCGAACTGTAAACGAG 57.507 42.857 23.33 0.00 33.84 4.18
1974 2001 3.061831 TGTTTTTCGCGAACTGTAAACGA 59.938 39.130 28.02 19.63 0.00 3.85
1975 2002 3.343990 TGTTTTTCGCGAACTGTAAACG 58.656 40.909 28.02 0.00 0.00 3.60
1976 2003 4.336932 ACTGTTTTTCGCGAACTGTAAAC 58.663 39.130 27.65 27.65 37.39 2.01
1977 2004 4.603231 ACTGTTTTTCGCGAACTGTAAA 57.397 36.364 23.33 16.32 37.39 2.01
1978 2005 4.603231 AACTGTTTTTCGCGAACTGTAA 57.397 36.364 23.33 10.55 37.93 2.41
1979 2006 4.603231 AAACTGTTTTTCGCGAACTGTA 57.397 36.364 23.33 3.46 37.93 2.74
1980 2007 3.481112 AAACTGTTTTTCGCGAACTGT 57.519 38.095 23.33 17.72 39.74 3.55
1981 2008 3.539401 GCAAAACTGTTTTTCGCGAACTG 60.539 43.478 23.33 17.05 32.27 3.16
1982 2009 2.596862 GCAAAACTGTTTTTCGCGAACT 59.403 40.909 23.33 0.00 32.27 3.01
1983 2010 2.591083 CGCAAAACTGTTTTTCGCGAAC 60.591 45.455 30.55 12.14 45.18 3.95
1984 2011 1.579808 CGCAAAACTGTTTTTCGCGAA 59.420 42.857 30.55 19.38 45.18 4.70
1985 2012 1.184349 CGCAAAACTGTTTTTCGCGA 58.816 45.000 30.55 3.71 45.18 5.87
1986 2013 0.225986 CCGCAAAACTGTTTTTCGCG 59.774 50.000 28.82 28.82 43.77 5.87
1987 2014 1.254313 GACCGCAAAACTGTTTTTCGC 59.746 47.619 25.28 19.94 32.27 4.70
1988 2015 1.849829 GGACCGCAAAACTGTTTTTCG 59.150 47.619 24.24 24.24 32.27 3.46
1989 2016 3.113322 GAGGACCGCAAAACTGTTTTTC 58.887 45.455 15.41 10.33 32.27 2.29
1990 2017 2.478879 CGAGGACCGCAAAACTGTTTTT 60.479 45.455 15.41 1.86 35.15 1.94
1991 2018 1.064952 CGAGGACCGCAAAACTGTTTT 59.935 47.619 12.50 12.50 0.00 2.43
1992 2019 0.661020 CGAGGACCGCAAAACTGTTT 59.339 50.000 0.00 0.00 0.00 2.83
1993 2020 2.317230 CGAGGACCGCAAAACTGTT 58.683 52.632 0.00 0.00 0.00 3.16
1994 2021 4.043168 CGAGGACCGCAAAACTGT 57.957 55.556 0.00 0.00 0.00 3.55
2003 2030 4.477975 GTGGAGACGCGAGGACCG 62.478 72.222 15.93 0.00 42.21 4.79
2004 2031 2.430382 TTTGTGGAGACGCGAGGACC 62.430 60.000 15.93 11.21 46.31 4.46
2005 2032 0.389948 ATTTGTGGAGACGCGAGGAC 60.390 55.000 15.93 2.10 46.31 3.85
2006 2033 0.108804 GATTTGTGGAGACGCGAGGA 60.109 55.000 15.93 0.00 46.31 3.71
2007 2034 1.413767 CGATTTGTGGAGACGCGAGG 61.414 60.000 15.93 0.00 46.31 4.63
2008 2035 0.456142 TCGATTTGTGGAGACGCGAG 60.456 55.000 15.93 0.00 46.31 5.03
2009 2036 0.038983 TTCGATTTGTGGAGACGCGA 60.039 50.000 15.93 0.00 46.31 5.87
2010 2037 0.787787 TTTCGATTTGTGGAGACGCG 59.212 50.000 3.53 3.53 46.31 6.01
2011 2038 2.571206 GTTTTCGATTTGTGGAGACGC 58.429 47.619 0.00 0.00 42.66 5.19
2012 2039 2.095919 GGGTTTTCGATTTGTGGAGACG 60.096 50.000 0.00 0.00 0.00 4.18
2013 2040 2.228103 GGGGTTTTCGATTTGTGGAGAC 59.772 50.000 0.00 0.00 0.00 3.36
2014 2041 2.158593 TGGGGTTTTCGATTTGTGGAGA 60.159 45.455 0.00 0.00 0.00 3.71
2015 2042 2.228822 CTGGGGTTTTCGATTTGTGGAG 59.771 50.000 0.00 0.00 0.00 3.86
2019 2046 4.157840 GCTAATCTGGGGTTTTCGATTTGT 59.842 41.667 0.00 0.00 0.00 2.83
2024 2051 1.631388 TGGCTAATCTGGGGTTTTCGA 59.369 47.619 0.00 0.00 0.00 3.71
2052 2079 6.370433 TTGAACTCAATTGTCGAAATCACA 57.630 33.333 5.13 0.00 0.00 3.58
2054 2081 7.323416 CGAATTTGAACTCAATTGTCGAAATCA 59.677 33.333 5.13 0.93 35.55 2.57
2059 2086 5.915812 TCGAATTTGAACTCAATTGTCGA 57.084 34.783 5.13 13.93 35.55 4.20
2083 2110 2.246789 CGCGCGAACCATGTTTTATTT 58.753 42.857 28.94 0.00 0.00 1.40
2094 2121 0.633235 CTTTTATTTGCGCGCGAACC 59.367 50.000 34.54 17.29 0.00 3.62
2127 2154 4.025813 GCATGAAGTCATTTTGCGTTTGTT 60.026 37.500 0.00 0.00 33.61 2.83
2240 2267 0.994263 GTGCAAATCATTTGAGGCGC 59.006 50.000 14.65 0.00 43.26 6.53
2388 3158 1.145377 ACGCACCTTTCGGTCACTT 59.855 52.632 0.00 0.00 43.24 3.16
2414 3184 6.425735 CATGATGGCAAGGTATCCCAATATA 58.574 40.000 0.00 0.00 31.43 0.86
2415 3185 5.266788 CATGATGGCAAGGTATCCCAATAT 58.733 41.667 0.00 0.00 31.43 1.28
2494 3264 0.950555 GTCTCTTGATGCGTGCACCA 60.951 55.000 12.15 10.86 0.00 4.17
2690 3465 1.043116 TCGACATCGATCAAGCCCCT 61.043 55.000 0.00 0.00 44.22 4.79
2732 3509 1.061131 GATGTCATTGCCGAGTTCGTG 59.939 52.381 0.48 0.00 37.74 4.35
2745 3522 4.402192 CGGCTCGAACGATGTCAT 57.598 55.556 3.30 0.00 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.