Multiple sequence alignment - TraesCS4D01G109400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G109400 chr4D 100.000 2465 0 0 1 2465 88470869 88473333 0.000000e+00 4553.0
1 TraesCS4D01G109400 chr4A 89.696 1252 71 30 430 1642 501243024 501244256 0.000000e+00 1544.0
2 TraesCS4D01G109400 chr4B 88.974 1043 54 24 607 1625 125425220 125426225 0.000000e+00 1232.0
3 TraesCS4D01G109400 chr4B 82.300 887 82 36 1609 2462 125426528 125427372 0.000000e+00 699.0
4 TraesCS4D01G109400 chr4B 87.143 70 6 2 535 601 125425110 125425179 2.630000e-10 76.8
5 TraesCS4D01G109400 chr3D 78.226 124 24 3 1 123 411006460 411006339 2.630000e-10 76.8
6 TraesCS4D01G109400 chr3A 83.562 73 6 4 1736 1805 32233649 32233580 2.050000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G109400 chr4D 88470869 88473333 2464 False 4553.000000 4553 100.000 1 2465 1 chr4D.!!$F1 2464
1 TraesCS4D01G109400 chr4A 501243024 501244256 1232 False 1544.000000 1544 89.696 430 1642 1 chr4A.!!$F1 1212
2 TraesCS4D01G109400 chr4B 125425110 125427372 2262 False 669.266667 1232 86.139 535 2462 3 chr4B.!!$F1 1927

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
327 328 0.026285 CGCGCGGTGAGATTAAAAGG 59.974 55.0 24.84 0.0 0.0 3.11 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2095 2521 1.008327 TGGAGCTATGGTGAAGAGGGA 59.992 52.381 0.0 0.0 0.0 4.2 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.430473 TTGGTGGTCGCATTTTCCT 57.570 47.368 0.00 0.00 0.00 3.36
19 20 0.958091 TTGGTGGTCGCATTTTCCTG 59.042 50.000 0.00 0.00 0.00 3.86
20 21 0.893270 TGGTGGTCGCATTTTCCTGG 60.893 55.000 0.00 0.00 0.00 4.45
21 22 0.893727 GGTGGTCGCATTTTCCTGGT 60.894 55.000 0.00 0.00 0.00 4.00
22 23 0.958822 GTGGTCGCATTTTCCTGGTT 59.041 50.000 0.00 0.00 0.00 3.67
23 24 1.339929 GTGGTCGCATTTTCCTGGTTT 59.660 47.619 0.00 0.00 0.00 3.27
24 25 2.035632 TGGTCGCATTTTCCTGGTTTT 58.964 42.857 0.00 0.00 0.00 2.43
25 26 3.004944 GTGGTCGCATTTTCCTGGTTTTA 59.995 43.478 0.00 0.00 0.00 1.52
26 27 3.829601 TGGTCGCATTTTCCTGGTTTTAT 59.170 39.130 0.00 0.00 0.00 1.40
27 28 4.282195 TGGTCGCATTTTCCTGGTTTTATT 59.718 37.500 0.00 0.00 0.00 1.40
28 29 5.221541 TGGTCGCATTTTCCTGGTTTTATTT 60.222 36.000 0.00 0.00 0.00 1.40
29 30 5.699001 GGTCGCATTTTCCTGGTTTTATTTT 59.301 36.000 0.00 0.00 0.00 1.82
30 31 6.869388 GGTCGCATTTTCCTGGTTTTATTTTA 59.131 34.615 0.00 0.00 0.00 1.52
31 32 7.062956 GGTCGCATTTTCCTGGTTTTATTTTAG 59.937 37.037 0.00 0.00 0.00 1.85
32 33 7.062956 GTCGCATTTTCCTGGTTTTATTTTAGG 59.937 37.037 0.00 0.00 0.00 2.69
33 34 6.183360 CGCATTTTCCTGGTTTTATTTTAGGC 60.183 38.462 0.00 0.00 0.00 3.93
34 35 6.093495 GCATTTTCCTGGTTTTATTTTAGGCC 59.907 38.462 0.00 0.00 0.00 5.19
35 36 6.749036 TTTTCCTGGTTTTATTTTAGGCCA 57.251 33.333 5.01 0.00 0.00 5.36
36 37 6.943899 TTTCCTGGTTTTATTTTAGGCCAT 57.056 33.333 5.01 0.00 0.00 4.40
37 38 6.943899 TTCCTGGTTTTATTTTAGGCCATT 57.056 33.333 5.01 0.00 0.00 3.16
38 39 6.538945 TCCTGGTTTTATTTTAGGCCATTC 57.461 37.500 5.01 0.00 0.00 2.67
39 40 5.126384 TCCTGGTTTTATTTTAGGCCATTCG 59.874 40.000 5.01 0.00 0.00 3.34
40 41 5.126384 CCTGGTTTTATTTTAGGCCATTCGA 59.874 40.000 5.01 0.00 0.00 3.71
41 42 5.956642 TGGTTTTATTTTAGGCCATTCGAC 58.043 37.500 5.01 0.00 0.00 4.20
42 43 5.032220 GGTTTTATTTTAGGCCATTCGACG 58.968 41.667 5.01 0.00 0.00 5.12
43 44 5.163733 GGTTTTATTTTAGGCCATTCGACGA 60.164 40.000 5.01 0.00 0.00 4.20
44 45 6.459161 GGTTTTATTTTAGGCCATTCGACGAT 60.459 38.462 5.01 0.00 0.00 3.73
45 46 5.666969 TTATTTTAGGCCATTCGACGATG 57.333 39.130 5.01 0.00 0.00 3.84
46 47 2.684001 TTTAGGCCATTCGACGATGT 57.316 45.000 5.01 0.00 0.00 3.06
47 48 1.934589 TTAGGCCATTCGACGATGTG 58.065 50.000 5.01 0.86 0.00 3.21
48 49 0.529773 TAGGCCATTCGACGATGTGC 60.530 55.000 5.01 1.25 0.00 4.57
58 59 3.168271 CGATGTGCGTTCAGTGGG 58.832 61.111 0.00 0.00 34.64 4.61
59 60 1.374125 CGATGTGCGTTCAGTGGGA 60.374 57.895 0.00 0.00 34.64 4.37
60 61 0.948623 CGATGTGCGTTCAGTGGGAA 60.949 55.000 0.00 0.00 34.64 3.97
61 62 0.798776 GATGTGCGTTCAGTGGGAAG 59.201 55.000 0.00 0.00 35.82 3.46
62 63 0.396435 ATGTGCGTTCAGTGGGAAGA 59.604 50.000 0.00 0.00 35.82 2.87
63 64 0.179234 TGTGCGTTCAGTGGGAAGAA 59.821 50.000 0.00 0.00 35.82 2.52
64 65 0.868406 GTGCGTTCAGTGGGAAGAAG 59.132 55.000 0.00 0.00 35.82 2.85
65 66 0.756294 TGCGTTCAGTGGGAAGAAGA 59.244 50.000 0.00 0.00 35.82 2.87
66 67 1.149148 GCGTTCAGTGGGAAGAAGAC 58.851 55.000 0.00 0.00 35.82 3.01
67 68 1.419374 CGTTCAGTGGGAAGAAGACG 58.581 55.000 0.00 0.00 35.82 4.18
68 69 1.269621 CGTTCAGTGGGAAGAAGACGT 60.270 52.381 0.00 0.00 35.82 4.34
69 70 2.802057 CGTTCAGTGGGAAGAAGACGTT 60.802 50.000 0.00 0.00 35.82 3.99
70 71 2.801111 GTTCAGTGGGAAGAAGACGTTC 59.199 50.000 0.00 0.00 35.82 3.95
71 72 2.317040 TCAGTGGGAAGAAGACGTTCT 58.683 47.619 0.00 0.00 45.56 3.01
72 73 2.296471 TCAGTGGGAAGAAGACGTTCTC 59.704 50.000 0.00 0.00 42.59 2.87
73 74 1.269998 AGTGGGAAGAAGACGTTCTCG 59.730 52.381 0.00 0.00 42.59 4.04
74 75 0.038526 TGGGAAGAAGACGTTCTCGC 60.039 55.000 0.00 0.00 42.59 5.03
75 76 0.736672 GGGAAGAAGACGTTCTCGCC 60.737 60.000 0.00 0.00 42.59 5.54
76 77 1.071567 GGAAGAAGACGTTCTCGCCG 61.072 60.000 0.00 0.00 42.59 6.46
77 78 0.109873 GAAGAAGACGTTCTCGCCGA 60.110 55.000 0.00 0.00 42.59 5.54
78 79 0.386985 AAGAAGACGTTCTCGCCGAC 60.387 55.000 0.00 0.00 42.59 4.79
79 80 1.209640 GAAGACGTTCTCGCCGACT 59.790 57.895 0.00 0.00 41.18 4.18
80 81 0.445436 GAAGACGTTCTCGCCGACTA 59.555 55.000 0.00 0.00 41.18 2.59
81 82 0.167689 AAGACGTTCTCGCCGACTAC 59.832 55.000 0.00 0.00 41.18 2.73
82 83 1.579626 GACGTTCTCGCCGACTACG 60.580 63.158 12.86 12.86 41.18 3.51
83 84 1.959899 GACGTTCTCGCCGACTACGA 61.960 60.000 19.14 0.00 40.34 3.43
88 89 3.190849 TCGCCGACTACGAGGACG 61.191 66.667 0.00 0.00 42.66 4.79
98 99 3.700961 CGAGGACGTTTATGGCGG 58.299 61.111 0.00 0.00 34.56 6.13
99 100 2.522638 CGAGGACGTTTATGGCGGC 61.523 63.158 0.00 0.00 36.49 6.53
100 101 1.153429 GAGGACGTTTATGGCGGCT 60.153 57.895 11.43 0.00 37.54 5.52
101 102 0.743345 GAGGACGTTTATGGCGGCTT 60.743 55.000 11.43 6.56 37.54 4.35
102 103 0.743345 AGGACGTTTATGGCGGCTTC 60.743 55.000 11.43 0.00 37.54 3.86
103 104 1.347221 GACGTTTATGGCGGCTTCG 59.653 57.895 11.43 6.71 34.02 3.79
104 105 1.356527 GACGTTTATGGCGGCTTCGT 61.357 55.000 11.43 10.11 34.02 3.85
105 106 1.347221 CGTTTATGGCGGCTTCGTC 59.653 57.895 11.43 0.00 39.24 4.20
110 111 2.662596 TGGCGGCTTCGTCAATCT 59.337 55.556 11.43 0.00 46.10 2.40
111 112 1.447838 TGGCGGCTTCGTCAATCTC 60.448 57.895 11.43 0.00 46.10 2.75
112 113 1.447838 GGCGGCTTCGTCAATCTCA 60.448 57.895 0.00 0.00 38.54 3.27
113 114 1.019278 GGCGGCTTCGTCAATCTCAA 61.019 55.000 0.00 0.00 38.54 3.02
114 115 0.796312 GCGGCTTCGTCAATCTCAAA 59.204 50.000 0.00 0.00 36.07 2.69
115 116 1.196808 GCGGCTTCGTCAATCTCAAAA 59.803 47.619 0.00 0.00 36.07 2.44
116 117 2.159517 GCGGCTTCGTCAATCTCAAAAT 60.160 45.455 0.00 0.00 36.07 1.82
117 118 3.063452 GCGGCTTCGTCAATCTCAAAATA 59.937 43.478 0.00 0.00 36.07 1.40
118 119 4.260784 GCGGCTTCGTCAATCTCAAAATAT 60.261 41.667 0.00 0.00 36.07 1.28
119 120 5.730568 GCGGCTTCGTCAATCTCAAAATATT 60.731 40.000 0.00 0.00 36.07 1.28
120 121 5.678483 CGGCTTCGTCAATCTCAAAATATTG 59.322 40.000 0.00 0.00 37.92 1.90
121 122 6.555315 GGCTTCGTCAATCTCAAAATATTGT 58.445 36.000 0.00 0.00 37.79 2.71
122 123 6.470235 GGCTTCGTCAATCTCAAAATATTGTG 59.530 38.462 0.00 0.00 37.79 3.33
123 124 7.023575 GCTTCGTCAATCTCAAAATATTGTGT 58.976 34.615 5.52 0.00 37.79 3.72
124 125 7.217070 GCTTCGTCAATCTCAAAATATTGTGTC 59.783 37.037 5.52 0.00 37.79 3.67
125 126 6.761117 TCGTCAATCTCAAAATATTGTGTCG 58.239 36.000 5.52 0.00 37.79 4.35
126 127 6.367695 TCGTCAATCTCAAAATATTGTGTCGT 59.632 34.615 5.52 0.00 37.79 4.34
127 128 6.462636 CGTCAATCTCAAAATATTGTGTCGTG 59.537 38.462 5.52 1.44 37.79 4.35
128 129 7.298122 GTCAATCTCAAAATATTGTGTCGTGT 58.702 34.615 5.52 0.00 37.79 4.49
129 130 7.269084 GTCAATCTCAAAATATTGTGTCGTGTG 59.731 37.037 5.52 0.54 37.79 3.82
130 131 5.029650 TCTCAAAATATTGTGTCGTGTGC 57.970 39.130 5.52 0.00 37.79 4.57
131 132 4.513318 TCTCAAAATATTGTGTCGTGTGCA 59.487 37.500 5.52 0.00 37.79 4.57
132 133 5.181056 TCTCAAAATATTGTGTCGTGTGCAT 59.819 36.000 5.52 0.00 37.79 3.96
133 134 5.152804 TCAAAATATTGTGTCGTGTGCATG 58.847 37.500 5.52 0.00 37.79 4.06
134 135 4.764679 AAATATTGTGTCGTGTGCATGT 57.235 36.364 0.00 0.00 0.00 3.21
135 136 4.340894 AATATTGTGTCGTGTGCATGTC 57.659 40.909 0.00 0.00 0.00 3.06
136 137 0.874390 ATTGTGTCGTGTGCATGTCC 59.126 50.000 0.00 0.00 0.00 4.02
137 138 0.179059 TTGTGTCGTGTGCATGTCCT 60.179 50.000 0.00 0.00 0.00 3.85
138 139 0.179059 TGTGTCGTGTGCATGTCCTT 60.179 50.000 0.00 0.00 0.00 3.36
139 140 0.512952 GTGTCGTGTGCATGTCCTTC 59.487 55.000 0.00 0.00 0.00 3.46
140 141 0.943835 TGTCGTGTGCATGTCCTTCG 60.944 55.000 0.00 0.00 0.00 3.79
141 142 2.027073 TCGTGTGCATGTCCTTCGC 61.027 57.895 0.00 0.00 0.00 4.70
142 143 2.316867 CGTGTGCATGTCCTTCGCA 61.317 57.895 0.00 0.00 0.00 5.10
143 144 1.638388 CGTGTGCATGTCCTTCGCAT 61.638 55.000 0.00 0.00 38.07 4.73
144 145 0.179181 GTGTGCATGTCCTTCGCATG 60.179 55.000 0.00 0.00 44.62 4.06
145 146 1.307355 TGTGCATGTCCTTCGCATGG 61.307 55.000 7.29 0.00 42.72 3.66
146 147 1.002257 TGCATGTCCTTCGCATGGT 60.002 52.632 7.29 0.00 42.72 3.55
147 148 0.608856 TGCATGTCCTTCGCATGGTT 60.609 50.000 7.29 0.00 42.72 3.67
148 149 0.179156 GCATGTCCTTCGCATGGTTG 60.179 55.000 7.29 0.00 42.72 3.77
149 150 1.452110 CATGTCCTTCGCATGGTTGA 58.548 50.000 0.00 0.00 39.82 3.18
150 151 1.399440 CATGTCCTTCGCATGGTTGAG 59.601 52.381 0.00 0.00 39.82 3.02
151 152 0.396435 TGTCCTTCGCATGGTTGAGT 59.604 50.000 0.00 0.00 0.00 3.41
152 153 0.798776 GTCCTTCGCATGGTTGAGTG 59.201 55.000 0.00 0.00 0.00 3.51
153 154 0.396435 TCCTTCGCATGGTTGAGTGT 59.604 50.000 0.00 0.00 0.00 3.55
154 155 1.621317 TCCTTCGCATGGTTGAGTGTA 59.379 47.619 0.00 0.00 0.00 2.90
155 156 2.236146 TCCTTCGCATGGTTGAGTGTAT 59.764 45.455 0.00 0.00 0.00 2.29
156 157 2.352651 CCTTCGCATGGTTGAGTGTATG 59.647 50.000 0.00 0.00 0.00 2.39
157 158 2.760634 TCGCATGGTTGAGTGTATGT 57.239 45.000 0.00 0.00 0.00 2.29
158 159 2.345876 TCGCATGGTTGAGTGTATGTG 58.654 47.619 0.00 0.00 33.55 3.21
159 160 1.202065 CGCATGGTTGAGTGTATGTGC 60.202 52.381 0.00 0.00 0.00 4.57
160 161 1.202065 GCATGGTTGAGTGTATGTGCG 60.202 52.381 0.00 0.00 0.00 5.34
161 162 2.076100 CATGGTTGAGTGTATGTGCGT 58.924 47.619 0.00 0.00 0.00 5.24
162 163 1.507562 TGGTTGAGTGTATGTGCGTG 58.492 50.000 0.00 0.00 0.00 5.34
163 164 1.202592 TGGTTGAGTGTATGTGCGTGT 60.203 47.619 0.00 0.00 0.00 4.49
164 165 2.036089 TGGTTGAGTGTATGTGCGTGTA 59.964 45.455 0.00 0.00 0.00 2.90
165 166 2.666508 GGTTGAGTGTATGTGCGTGTAG 59.333 50.000 0.00 0.00 0.00 2.74
166 167 3.571571 GTTGAGTGTATGTGCGTGTAGA 58.428 45.455 0.00 0.00 0.00 2.59
167 168 4.174009 GTTGAGTGTATGTGCGTGTAGAT 58.826 43.478 0.00 0.00 0.00 1.98
168 169 5.337554 GTTGAGTGTATGTGCGTGTAGATA 58.662 41.667 0.00 0.00 0.00 1.98
169 170 5.570234 TGAGTGTATGTGCGTGTAGATAA 57.430 39.130 0.00 0.00 0.00 1.75
170 171 5.578776 TGAGTGTATGTGCGTGTAGATAAG 58.421 41.667 0.00 0.00 0.00 1.73
171 172 4.360563 AGTGTATGTGCGTGTAGATAAGC 58.639 43.478 0.00 0.00 0.00 3.09
172 173 4.109766 GTGTATGTGCGTGTAGATAAGCA 58.890 43.478 0.00 0.00 37.26 3.91
173 174 4.745125 GTGTATGTGCGTGTAGATAAGCAT 59.255 41.667 0.00 0.00 41.88 3.79
174 175 4.982295 TGTATGTGCGTGTAGATAAGCATC 59.018 41.667 0.00 0.00 41.88 3.91
175 176 2.821546 TGTGCGTGTAGATAAGCATCC 58.178 47.619 0.00 0.00 41.88 3.51
176 177 1.787155 GTGCGTGTAGATAAGCATCCG 59.213 52.381 0.00 0.00 41.88 4.18
177 178 0.784778 GCGTGTAGATAAGCATCCGC 59.215 55.000 0.00 0.00 33.24 5.54
178 179 1.868109 GCGTGTAGATAAGCATCCGCA 60.868 52.381 0.00 0.00 42.27 5.69
179 180 2.677199 CGTGTAGATAAGCATCCGCAT 58.323 47.619 0.00 0.00 42.27 4.73
180 181 3.059884 CGTGTAGATAAGCATCCGCATT 58.940 45.455 0.00 0.00 42.27 3.56
181 182 3.494626 CGTGTAGATAAGCATCCGCATTT 59.505 43.478 0.00 0.00 42.27 2.32
182 183 4.609113 CGTGTAGATAAGCATCCGCATTTG 60.609 45.833 0.00 0.00 42.27 2.32
183 184 4.273480 GTGTAGATAAGCATCCGCATTTGT 59.727 41.667 0.00 0.00 42.27 2.83
184 185 5.465390 GTGTAGATAAGCATCCGCATTTGTA 59.535 40.000 0.00 0.00 42.27 2.41
185 186 6.147821 GTGTAGATAAGCATCCGCATTTGTAT 59.852 38.462 0.00 0.00 42.27 2.29
186 187 6.710295 TGTAGATAAGCATCCGCATTTGTATT 59.290 34.615 0.00 0.00 42.27 1.89
187 188 6.005583 AGATAAGCATCCGCATTTGTATTG 57.994 37.500 0.00 0.00 42.27 1.90
188 189 5.532406 AGATAAGCATCCGCATTTGTATTGT 59.468 36.000 0.00 0.00 42.27 2.71
189 190 3.425577 AGCATCCGCATTTGTATTGTG 57.574 42.857 0.00 0.00 42.27 3.33
190 191 2.754552 AGCATCCGCATTTGTATTGTGT 59.245 40.909 0.00 0.00 42.27 3.72
191 192 3.108144 GCATCCGCATTTGTATTGTGTC 58.892 45.455 0.00 0.00 38.36 3.67
192 193 3.694734 CATCCGCATTTGTATTGTGTCC 58.305 45.455 0.00 0.00 0.00 4.02
193 194 2.784347 TCCGCATTTGTATTGTGTCCA 58.216 42.857 0.00 0.00 0.00 4.02
194 195 3.149981 TCCGCATTTGTATTGTGTCCAA 58.850 40.909 0.00 0.00 34.45 3.53
195 196 3.570125 TCCGCATTTGTATTGTGTCCAAA 59.430 39.130 0.00 0.00 33.44 3.28
196 197 4.038042 TCCGCATTTGTATTGTGTCCAAAA 59.962 37.500 0.00 0.00 33.44 2.44
197 198 4.747108 CCGCATTTGTATTGTGTCCAAAAA 59.253 37.500 0.00 0.00 33.44 1.94
219 220 8.587952 AAAAATTCAGGTTCTTTTAATCACCG 57.412 30.769 0.00 0.00 34.19 4.94
220 221 4.759516 TTCAGGTTCTTTTAATCACCGC 57.240 40.909 0.00 0.00 34.19 5.68
221 222 3.745799 TCAGGTTCTTTTAATCACCGCA 58.254 40.909 0.00 0.00 34.19 5.69
222 223 3.500680 TCAGGTTCTTTTAATCACCGCAC 59.499 43.478 0.00 0.00 34.19 5.34
223 224 3.502211 CAGGTTCTTTTAATCACCGCACT 59.498 43.478 0.00 0.00 34.19 4.40
224 225 4.693566 CAGGTTCTTTTAATCACCGCACTA 59.306 41.667 0.00 0.00 34.19 2.74
225 226 4.935808 AGGTTCTTTTAATCACCGCACTAG 59.064 41.667 0.00 0.00 34.19 2.57
226 227 4.436986 GGTTCTTTTAATCACCGCACTAGC 60.437 45.833 0.00 0.00 37.42 3.42
227 228 4.202245 TCTTTTAATCACCGCACTAGCT 57.798 40.909 0.00 0.00 39.10 3.32
228 229 3.932710 TCTTTTAATCACCGCACTAGCTG 59.067 43.478 0.00 0.00 39.10 4.24
229 230 3.328382 TTTAATCACCGCACTAGCTGT 57.672 42.857 0.00 0.00 38.86 4.40
230 231 3.328382 TTAATCACCGCACTAGCTGTT 57.672 42.857 0.00 0.00 35.94 3.16
231 232 1.726853 AATCACCGCACTAGCTGTTC 58.273 50.000 0.00 0.00 35.94 3.18
232 233 0.608130 ATCACCGCACTAGCTGTTCA 59.392 50.000 0.00 0.00 35.94 3.18
233 234 0.391228 TCACCGCACTAGCTGTTCAA 59.609 50.000 0.00 0.00 35.94 2.69
234 235 1.001974 TCACCGCACTAGCTGTTCAAT 59.998 47.619 0.00 0.00 35.94 2.57
235 236 1.806542 CACCGCACTAGCTGTTCAATT 59.193 47.619 0.00 0.00 35.94 2.32
236 237 1.806542 ACCGCACTAGCTGTTCAATTG 59.193 47.619 0.00 0.00 34.29 2.32
237 238 2.076100 CCGCACTAGCTGTTCAATTGA 58.924 47.619 3.38 3.38 39.10 2.57
238 239 2.679837 CCGCACTAGCTGTTCAATTGAT 59.320 45.455 9.40 0.00 39.10 2.57
239 240 3.242543 CCGCACTAGCTGTTCAATTGATC 60.243 47.826 9.40 9.29 39.10 2.92
240 241 3.371898 CGCACTAGCTGTTCAATTGATCA 59.628 43.478 16.39 16.39 39.10 2.92
241 242 4.142838 CGCACTAGCTGTTCAATTGATCAA 60.143 41.667 17.59 11.26 39.10 2.57
242 243 5.448225 CGCACTAGCTGTTCAATTGATCAAT 60.448 40.000 15.36 15.36 39.10 2.57
243 244 5.742453 GCACTAGCTGTTCAATTGATCAATG 59.258 40.000 21.39 14.78 37.91 2.82
244 245 5.742453 CACTAGCTGTTCAATTGATCAATGC 59.258 40.000 21.39 17.71 0.00 3.56
245 246 5.651139 ACTAGCTGTTCAATTGATCAATGCT 59.349 36.000 24.81 24.81 33.09 3.79
246 247 6.825213 ACTAGCTGTTCAATTGATCAATGCTA 59.175 34.615 24.54 24.54 31.79 3.49
247 248 6.519679 AGCTGTTCAATTGATCAATGCTAA 57.480 33.333 21.39 12.72 29.28 3.09
248 249 6.927416 AGCTGTTCAATTGATCAATGCTAAA 58.073 32.000 21.39 10.48 29.28 1.85
249 250 7.033791 AGCTGTTCAATTGATCAATGCTAAAG 58.966 34.615 21.39 16.18 29.28 1.85
250 251 6.255020 GCTGTTCAATTGATCAATGCTAAAGG 59.745 38.462 21.39 10.38 0.00 3.11
251 252 7.465353 TGTTCAATTGATCAATGCTAAAGGA 57.535 32.000 21.39 8.11 0.00 3.36
252 253 7.315142 TGTTCAATTGATCAATGCTAAAGGAC 58.685 34.615 21.39 12.00 0.00 3.85
253 254 7.039853 TGTTCAATTGATCAATGCTAAAGGACA 60.040 33.333 21.39 14.04 0.00 4.02
254 255 7.092137 TCAATTGATCAATGCTAAAGGACAG 57.908 36.000 21.39 1.58 0.00 3.51
255 256 6.095860 TCAATTGATCAATGCTAAAGGACAGG 59.904 38.462 21.39 0.00 0.00 4.00
256 257 4.842531 TGATCAATGCTAAAGGACAGGA 57.157 40.909 0.00 0.00 0.00 3.86
257 258 5.378230 TGATCAATGCTAAAGGACAGGAT 57.622 39.130 0.00 0.00 0.00 3.24
258 259 5.371526 TGATCAATGCTAAAGGACAGGATC 58.628 41.667 0.00 0.00 34.04 3.36
259 260 3.797039 TCAATGCTAAAGGACAGGATCG 58.203 45.455 0.00 0.00 0.00 3.69
260 261 3.197766 TCAATGCTAAAGGACAGGATCGT 59.802 43.478 0.00 0.00 0.00 3.73
261 262 3.914426 ATGCTAAAGGACAGGATCGTT 57.086 42.857 0.00 0.00 36.99 3.85
262 263 3.247006 TGCTAAAGGACAGGATCGTTC 57.753 47.619 0.00 0.00 34.29 3.95
263 264 2.093658 TGCTAAAGGACAGGATCGTTCC 60.094 50.000 4.21 4.21 42.96 3.62
264 265 2.742204 GCTAAAGGACAGGATCGTTCCC 60.742 54.545 8.95 4.55 43.76 3.97
265 266 1.358152 AAAGGACAGGATCGTTCCCA 58.642 50.000 8.95 0.00 43.76 4.37
266 267 1.358152 AAGGACAGGATCGTTCCCAA 58.642 50.000 8.95 0.00 43.76 4.12
267 268 1.584724 AGGACAGGATCGTTCCCAAT 58.415 50.000 8.95 0.00 43.76 3.16
268 269 1.916181 AGGACAGGATCGTTCCCAATT 59.084 47.619 8.95 0.00 43.76 2.32
269 270 2.308866 AGGACAGGATCGTTCCCAATTT 59.691 45.455 8.95 0.00 43.76 1.82
270 271 2.423538 GGACAGGATCGTTCCCAATTTG 59.576 50.000 8.95 3.35 43.76 2.32
271 272 1.818674 ACAGGATCGTTCCCAATTTGC 59.181 47.619 8.95 0.00 43.76 3.68
272 273 1.818060 CAGGATCGTTCCCAATTTGCA 59.182 47.619 8.95 0.00 43.76 4.08
273 274 2.230992 CAGGATCGTTCCCAATTTGCAA 59.769 45.455 8.95 0.00 43.76 4.08
274 275 3.099141 AGGATCGTTCCCAATTTGCAAT 58.901 40.909 8.95 0.00 43.76 3.56
275 276 3.119029 AGGATCGTTCCCAATTTGCAATG 60.119 43.478 8.95 0.00 43.76 2.82
276 277 2.739885 TCGTTCCCAATTTGCAATGG 57.260 45.000 11.50 11.50 36.42 3.16
277 278 1.967066 TCGTTCCCAATTTGCAATGGT 59.033 42.857 16.11 0.00 34.79 3.55
278 279 2.067766 CGTTCCCAATTTGCAATGGTG 58.932 47.619 16.11 9.02 34.79 4.17
293 294 5.840243 CAATGGTGCTGATGGAGATTAAA 57.160 39.130 0.00 0.00 0.00 1.52
294 295 6.211587 CAATGGTGCTGATGGAGATTAAAA 57.788 37.500 0.00 0.00 0.00 1.52
295 296 6.270815 CAATGGTGCTGATGGAGATTAAAAG 58.729 40.000 0.00 0.00 0.00 2.27
296 297 4.272489 TGGTGCTGATGGAGATTAAAAGG 58.728 43.478 0.00 0.00 0.00 3.11
297 298 3.067320 GGTGCTGATGGAGATTAAAAGGC 59.933 47.826 0.00 0.00 0.00 4.35
298 299 3.950395 GTGCTGATGGAGATTAAAAGGCT 59.050 43.478 0.00 0.00 0.00 4.58
299 300 4.400567 GTGCTGATGGAGATTAAAAGGCTT 59.599 41.667 0.00 0.00 0.00 4.35
300 301 5.018809 TGCTGATGGAGATTAAAAGGCTTT 58.981 37.500 6.68 6.68 0.00 3.51
301 302 5.481473 TGCTGATGGAGATTAAAAGGCTTTT 59.519 36.000 26.65 26.65 36.67 2.27
302 303 6.014327 TGCTGATGGAGATTAAAAGGCTTTTT 60.014 34.615 28.33 13.23 39.69 1.94
319 320 3.273084 TTTTTGCGCGCGGTGAGA 61.273 55.556 33.06 4.09 0.00 3.27
320 321 2.612567 TTTTTGCGCGCGGTGAGAT 61.613 52.632 33.06 0.00 0.00 2.75
321 322 2.123988 TTTTTGCGCGCGGTGAGATT 62.124 50.000 33.06 0.00 0.00 2.40
322 323 1.292571 TTTTGCGCGCGGTGAGATTA 61.293 50.000 33.06 1.38 0.00 1.75
323 324 1.292571 TTTGCGCGCGGTGAGATTAA 61.293 50.000 33.06 8.76 0.00 1.40
324 325 1.292571 TTGCGCGCGGTGAGATTAAA 61.293 50.000 33.06 7.92 0.00 1.52
325 326 1.292571 TGCGCGCGGTGAGATTAAAA 61.293 50.000 33.06 0.00 0.00 1.52
326 327 0.586502 GCGCGCGGTGAGATTAAAAG 60.587 55.000 33.06 0.00 0.00 2.27
327 328 0.026285 CGCGCGGTGAGATTAAAAGG 59.974 55.000 24.84 0.00 0.00 3.11
328 329 0.248094 GCGCGGTGAGATTAAAAGGC 60.248 55.000 8.83 0.00 0.00 4.35
329 330 1.369625 CGCGGTGAGATTAAAAGGCT 58.630 50.000 0.00 0.00 0.00 4.58
330 331 1.737793 CGCGGTGAGATTAAAAGGCTT 59.262 47.619 0.00 0.00 0.00 4.35
331 332 2.161609 CGCGGTGAGATTAAAAGGCTTT 59.838 45.455 6.68 6.68 0.00 3.51
332 333 3.365969 CGCGGTGAGATTAAAAGGCTTTT 60.366 43.478 26.65 26.65 36.67 2.27
333 334 3.920412 GCGGTGAGATTAAAAGGCTTTTG 59.080 43.478 30.27 14.20 34.19 2.44
334 335 4.485163 CGGTGAGATTAAAAGGCTTTTGG 58.515 43.478 30.27 8.27 34.19 3.28
335 336 4.022329 CGGTGAGATTAAAAGGCTTTTGGT 60.022 41.667 30.27 19.92 34.19 3.67
336 337 5.508994 CGGTGAGATTAAAAGGCTTTTGGTT 60.509 40.000 30.27 16.86 34.19 3.67
337 338 6.294286 CGGTGAGATTAAAAGGCTTTTGGTTA 60.294 38.462 30.27 15.57 34.19 2.85
338 339 7.438564 GGTGAGATTAAAAGGCTTTTGGTTAA 58.561 34.615 30.27 18.88 34.19 2.01
339 340 7.384115 GGTGAGATTAAAAGGCTTTTGGTTAAC 59.616 37.037 30.27 20.51 34.19 2.01
340 341 7.114388 GTGAGATTAAAAGGCTTTTGGTTAACG 59.886 37.037 30.27 0.00 34.19 3.18
341 342 6.452242 AGATTAAAAGGCTTTTGGTTAACGG 58.548 36.000 30.27 0.00 34.19 4.44
342 343 5.848833 TTAAAAGGCTTTTGGTTAACGGA 57.151 34.783 30.27 8.48 34.19 4.69
343 344 4.739587 AAAAGGCTTTTGGTTAACGGAA 57.260 36.364 23.56 0.00 0.00 4.30
344 345 4.316205 AAAGGCTTTTGGTTAACGGAAG 57.684 40.909 6.68 4.93 0.00 3.46
345 346 5.360429 TAAAAGGCTTTTGGTTAACGGAAGT 59.640 36.000 30.27 5.95 39.10 3.01
346 347 6.680872 TAAAAGGCTTTTGGTTAACGGAAGTG 60.681 38.462 30.27 4.42 38.07 3.16
347 348 8.978432 TAAAAGGCTTTTGGTTAACGGAAGTGT 61.978 37.037 30.27 4.98 38.07 3.55
362 363 7.642082 ACGGAAGTGTAGAACTACTCATATT 57.358 36.000 12.25 1.64 46.97 1.28
363 364 8.064336 ACGGAAGTGTAGAACTACTCATATTT 57.936 34.615 12.25 1.35 46.97 1.40
364 365 8.189460 ACGGAAGTGTAGAACTACTCATATTTC 58.811 37.037 12.25 8.49 46.97 2.17
365 366 7.376336 CGGAAGTGTAGAACTACTCATATTTCG 59.624 40.741 12.25 7.01 38.56 3.46
366 367 8.404000 GGAAGTGTAGAACTACTCATATTTCGA 58.596 37.037 12.25 0.00 38.56 3.71
367 368 9.440784 GAAGTGTAGAACTACTCATATTTCGAG 57.559 37.037 12.25 0.00 38.56 4.04
368 369 8.734218 AGTGTAGAACTACTCATATTTCGAGA 57.266 34.615 12.25 0.00 37.36 4.04
369 370 8.832521 AGTGTAGAACTACTCATATTTCGAGAG 58.167 37.037 12.25 0.00 37.36 3.20
370 371 7.588488 GTGTAGAACTACTCATATTTCGAGAGC 59.412 40.741 12.25 0.00 37.00 4.09
371 372 6.701145 AGAACTACTCATATTTCGAGAGCA 57.299 37.500 0.00 0.00 34.47 4.26
372 373 6.734137 AGAACTACTCATATTTCGAGAGCAG 58.266 40.000 0.00 0.00 34.47 4.24
373 374 5.446143 ACTACTCATATTTCGAGAGCAGG 57.554 43.478 4.45 0.00 34.47 4.85
374 375 5.133941 ACTACTCATATTTCGAGAGCAGGA 58.866 41.667 4.45 0.00 34.47 3.86
375 376 5.772672 ACTACTCATATTTCGAGAGCAGGAT 59.227 40.000 4.45 0.00 34.47 3.24
376 377 6.943146 ACTACTCATATTTCGAGAGCAGGATA 59.057 38.462 4.45 0.00 34.47 2.59
377 378 6.656632 ACTCATATTTCGAGAGCAGGATAA 57.343 37.500 0.00 0.00 34.47 1.75
378 379 7.238486 ACTCATATTTCGAGAGCAGGATAAT 57.762 36.000 0.00 0.00 34.47 1.28
379 380 7.095910 ACTCATATTTCGAGAGCAGGATAATG 58.904 38.462 0.00 0.00 34.47 1.90
380 381 6.997655 TCATATTTCGAGAGCAGGATAATGT 58.002 36.000 0.00 0.00 0.00 2.71
381 382 7.445121 TCATATTTCGAGAGCAGGATAATGTT 58.555 34.615 0.00 0.00 0.00 2.71
382 383 8.585018 TCATATTTCGAGAGCAGGATAATGTTA 58.415 33.333 0.00 0.00 0.00 2.41
383 384 8.867935 CATATTTCGAGAGCAGGATAATGTTAG 58.132 37.037 0.00 0.00 0.00 2.34
384 385 4.244425 TCGAGAGCAGGATAATGTTAGC 57.756 45.455 0.00 0.00 0.00 3.09
385 386 3.005897 TCGAGAGCAGGATAATGTTAGCC 59.994 47.826 0.00 0.00 39.46 3.93
386 387 3.243873 CGAGAGCAGGATAATGTTAGCCA 60.244 47.826 9.48 0.00 41.57 4.75
387 388 4.562347 CGAGAGCAGGATAATGTTAGCCAT 60.562 45.833 9.48 0.00 41.57 4.40
388 389 4.649692 AGAGCAGGATAATGTTAGCCATG 58.350 43.478 9.48 6.14 41.57 3.66
389 390 4.103785 AGAGCAGGATAATGTTAGCCATGT 59.896 41.667 9.48 0.00 41.57 3.21
390 391 4.796606 AGCAGGATAATGTTAGCCATGTT 58.203 39.130 9.48 1.38 41.57 2.71
391 392 5.203528 AGCAGGATAATGTTAGCCATGTTT 58.796 37.500 9.48 0.00 41.57 2.83
392 393 5.658190 AGCAGGATAATGTTAGCCATGTTTT 59.342 36.000 9.48 0.00 41.57 2.43
393 394 6.833416 AGCAGGATAATGTTAGCCATGTTTTA 59.167 34.615 9.48 0.00 41.57 1.52
394 395 7.013655 AGCAGGATAATGTTAGCCATGTTTTAG 59.986 37.037 9.48 0.00 41.57 1.85
395 396 7.013274 GCAGGATAATGTTAGCCATGTTTTAGA 59.987 37.037 9.48 0.00 41.57 2.10
396 397 8.902806 CAGGATAATGTTAGCCATGTTTTAGAA 58.097 33.333 9.48 0.00 41.57 2.10
397 398 8.903820 AGGATAATGTTAGCCATGTTTTAGAAC 58.096 33.333 9.48 0.00 41.57 3.01
398 399 8.903820 GGATAATGTTAGCCATGTTTTAGAACT 58.096 33.333 2.34 0.00 39.00 3.01
401 402 7.759489 ATGTTAGCCATGTTTTAGAACTTCA 57.241 32.000 0.00 0.00 36.70 3.02
402 403 7.202016 TGTTAGCCATGTTTTAGAACTTCAG 57.798 36.000 0.00 0.00 36.70 3.02
403 404 6.206634 TGTTAGCCATGTTTTAGAACTTCAGG 59.793 38.462 0.00 0.00 36.70 3.86
404 405 4.985538 AGCCATGTTTTAGAACTTCAGGA 58.014 39.130 0.00 0.00 36.70 3.86
405 406 5.006386 AGCCATGTTTTAGAACTTCAGGAG 58.994 41.667 0.00 0.00 36.70 3.69
406 407 5.003804 GCCATGTTTTAGAACTTCAGGAGA 58.996 41.667 0.00 0.00 36.70 3.71
407 408 5.473504 GCCATGTTTTAGAACTTCAGGAGAA 59.526 40.000 0.00 0.00 36.70 2.87
408 409 6.568653 GCCATGTTTTAGAACTTCAGGAGAAC 60.569 42.308 0.00 0.00 36.70 3.01
409 410 6.347725 CCATGTTTTAGAACTTCAGGAGAACG 60.348 42.308 0.00 0.00 36.70 3.95
410 411 5.909477 TGTTTTAGAACTTCAGGAGAACGA 58.091 37.500 0.00 0.00 36.70 3.85
411 412 6.342906 TGTTTTAGAACTTCAGGAGAACGAA 58.657 36.000 0.00 0.00 36.70 3.85
412 413 6.479001 TGTTTTAGAACTTCAGGAGAACGAAG 59.521 38.462 0.00 0.00 43.48 3.79
413 414 3.669251 AGAACTTCAGGAGAACGAAGG 57.331 47.619 0.00 0.00 42.40 3.46
414 415 3.231818 AGAACTTCAGGAGAACGAAGGA 58.768 45.455 0.00 0.00 42.40 3.36
415 416 3.006003 AGAACTTCAGGAGAACGAAGGAC 59.994 47.826 0.00 0.00 42.40 3.85
416 417 1.619332 ACTTCAGGAGAACGAAGGACC 59.381 52.381 0.00 0.00 42.40 4.46
417 418 1.618837 CTTCAGGAGAACGAAGGACCA 59.381 52.381 0.00 0.00 35.93 4.02
418 419 1.938585 TCAGGAGAACGAAGGACCAT 58.061 50.000 0.00 0.00 0.00 3.55
419 420 3.095912 TCAGGAGAACGAAGGACCATA 57.904 47.619 0.00 0.00 0.00 2.74
420 421 3.643237 TCAGGAGAACGAAGGACCATAT 58.357 45.455 0.00 0.00 0.00 1.78
421 422 4.030913 TCAGGAGAACGAAGGACCATATT 58.969 43.478 0.00 0.00 0.00 1.28
422 423 4.122776 CAGGAGAACGAAGGACCATATTG 58.877 47.826 0.00 0.00 0.00 1.90
423 424 3.775316 AGGAGAACGAAGGACCATATTGT 59.225 43.478 0.00 0.00 0.00 2.71
424 425 3.871594 GGAGAACGAAGGACCATATTGTG 59.128 47.826 0.00 0.00 0.00 3.33
457 458 3.806949 TCTGGCCTTGTTAACATTCCT 57.193 42.857 9.56 0.00 0.00 3.36
461 462 4.993028 TGGCCTTGTTAACATTCCTAGTT 58.007 39.130 9.56 0.00 0.00 2.24
462 463 5.390387 TGGCCTTGTTAACATTCCTAGTTT 58.610 37.500 9.56 0.00 0.00 2.66
463 464 5.242838 TGGCCTTGTTAACATTCCTAGTTTG 59.757 40.000 9.56 0.00 0.00 2.93
464 465 5.243060 GGCCTTGTTAACATTCCTAGTTTGT 59.757 40.000 9.56 0.00 0.00 2.83
465 466 6.431852 GGCCTTGTTAACATTCCTAGTTTGTA 59.568 38.462 9.56 0.00 0.00 2.41
466 467 7.122204 GGCCTTGTTAACATTCCTAGTTTGTAT 59.878 37.037 9.56 0.00 0.00 2.29
467 468 9.169592 GCCTTGTTAACATTCCTAGTTTGTATA 57.830 33.333 9.56 0.00 0.00 1.47
504 505 7.391148 TTTGCTCTTGAGTAATACATTTCCC 57.609 36.000 2.27 0.00 0.00 3.97
511 512 5.920903 TGAGTAATACATTTCCCTTACCCG 58.079 41.667 0.00 0.00 0.00 5.28
512 513 4.711399 AGTAATACATTTCCCTTACCCGC 58.289 43.478 0.00 0.00 0.00 6.13
513 514 2.651382 ATACATTTCCCTTACCCGCC 57.349 50.000 0.00 0.00 0.00 6.13
514 515 1.287217 TACATTTCCCTTACCCGCCA 58.713 50.000 0.00 0.00 0.00 5.69
515 516 0.034477 ACATTTCCCTTACCCGCCAG 60.034 55.000 0.00 0.00 0.00 4.85
516 517 0.254747 CATTTCCCTTACCCGCCAGA 59.745 55.000 0.00 0.00 0.00 3.86
570 601 1.234821 ATGTGGCACGGTTAACAGTG 58.765 50.000 27.93 27.93 43.37 3.66
604 641 3.936453 CCCTTTTACATTCGTTCCGATCA 59.064 43.478 0.00 0.00 35.23 2.92
621 687 4.320953 CCGATCACGATGTTCATATGTACG 59.679 45.833 7.82 7.72 42.66 3.67
625 696 5.513376 TCACGATGTTCATATGTACGTACC 58.487 41.667 22.43 6.13 0.00 3.34
667 739 3.065648 CGTGATCCATGCAACATGATCAA 59.934 43.478 17.13 5.09 31.95 2.57
690 762 4.389772 GCAGGCGCAAATCATCAC 57.610 55.556 10.83 0.00 38.36 3.06
730 802 2.131972 CGTTCCCGCGATCAATTATCA 58.868 47.619 8.23 0.00 33.87 2.15
735 807 4.951254 TCCCGCGATCAATTATCAAGTTA 58.049 39.130 8.23 0.00 33.87 2.24
758 830 4.063529 CGGGGCATCAATACGCAT 57.936 55.556 0.00 0.00 0.00 4.73
769 841 6.348458 GGCATCAATACGCATAATCAAGCTAA 60.348 38.462 0.00 0.00 0.00 3.09
771 843 6.785488 TCAATACGCATAATCAAGCTAAGG 57.215 37.500 0.00 0.00 0.00 2.69
772 844 5.179368 TCAATACGCATAATCAAGCTAAGGC 59.821 40.000 0.00 0.00 39.06 4.35
773 845 2.917933 ACGCATAATCAAGCTAAGGCA 58.082 42.857 0.00 0.00 41.70 4.75
774 846 2.614057 ACGCATAATCAAGCTAAGGCAC 59.386 45.455 0.00 0.00 41.70 5.01
775 847 2.031682 CGCATAATCAAGCTAAGGCACC 60.032 50.000 0.00 0.00 41.70 5.01
776 848 3.217626 GCATAATCAAGCTAAGGCACCT 58.782 45.455 0.00 0.00 41.70 4.00
777 849 3.004106 GCATAATCAAGCTAAGGCACCTG 59.996 47.826 0.00 0.00 41.70 4.00
841 916 2.122989 GTCTCCCCCGCATCCCTA 60.123 66.667 0.00 0.00 0.00 3.53
842 917 1.764854 GTCTCCCCCGCATCCCTAA 60.765 63.158 0.00 0.00 0.00 2.69
843 918 1.764854 TCTCCCCCGCATCCCTAAC 60.765 63.158 0.00 0.00 0.00 2.34
844 919 2.041430 TCCCCCGCATCCCTAACA 59.959 61.111 0.00 0.00 0.00 2.41
845 920 2.044806 CTCCCCCGCATCCCTAACAG 62.045 65.000 0.00 0.00 0.00 3.16
864 939 3.770424 GAAACGTACGCGCGCCTT 61.770 61.111 32.58 15.78 42.83 4.35
898 976 1.807165 CAGGCACGTCGATCCACTG 60.807 63.158 0.00 0.00 0.00 3.66
914 992 1.060553 CACTGTATAAACACGCCGCTG 59.939 52.381 0.00 0.00 0.00 5.18
954 1032 2.409870 ACGGCCTTGCATTGCTAGC 61.410 57.895 8.10 8.10 30.63 3.42
955 1033 2.117156 CGGCCTTGCATTGCTAGCT 61.117 57.895 17.23 0.00 30.63 3.32
956 1034 0.815213 CGGCCTTGCATTGCTAGCTA 60.815 55.000 17.23 9.14 30.63 3.32
957 1035 0.665298 GGCCTTGCATTGCTAGCTAC 59.335 55.000 17.23 3.16 30.63 3.58
958 1036 0.665298 GCCTTGCATTGCTAGCTACC 59.335 55.000 17.23 4.08 30.63 3.18
959 1037 1.748591 GCCTTGCATTGCTAGCTACCT 60.749 52.381 17.23 0.00 30.63 3.08
960 1038 2.648059 CCTTGCATTGCTAGCTACCTT 58.352 47.619 17.23 0.00 30.63 3.50
961 1039 2.357009 CCTTGCATTGCTAGCTACCTTG 59.643 50.000 17.23 5.10 30.63 3.61
962 1040 1.382522 TGCATTGCTAGCTACCTTGC 58.617 50.000 17.23 15.29 39.75 4.01
964 1042 1.939974 CATTGCTAGCTACCTTGCGA 58.060 50.000 17.23 0.00 41.78 5.10
981 1061 4.344865 ACCACAAATCGCCGGGCT 62.345 61.111 18.34 0.00 0.00 5.19
1032 1115 4.338539 AAGTTCGTCGTCGCCGCT 62.339 61.111 0.00 0.00 36.96 5.52
1042 1125 3.062466 TCGCCGCTCTGCTAGTGT 61.062 61.111 0.00 0.00 33.58 3.55
1046 1129 1.213013 CCGCTCTGCTAGTGTTCGT 59.787 57.895 0.00 0.00 33.58 3.85
1047 1130 0.798771 CCGCTCTGCTAGTGTTCGTC 60.799 60.000 0.00 0.00 33.58 4.20
1286 1380 2.363795 CGAGTCCTACCTGGGCCA 60.364 66.667 5.85 5.85 42.71 5.36
1404 1498 1.080995 GCTTCTGCGACGCTGAGATT 61.081 55.000 25.15 0.00 37.75 2.40
1468 1562 1.033202 TGCTGCGCAACCATGATCAT 61.033 50.000 13.05 1.18 34.76 2.45
1470 1564 0.736636 CTGCGCAACCATGATCATGT 59.263 50.000 29.23 17.14 37.11 3.21
1472 1566 2.551032 CTGCGCAACCATGATCATGTAT 59.449 45.455 29.23 17.15 37.11 2.29
1474 1568 2.919387 GCGCAACCATGATCATGTATGC 60.919 50.000 32.57 32.57 41.27 3.14
1482 1576 5.163269 ACCATGATCATGTATGCAGTAGTGT 60.163 40.000 29.23 15.12 37.11 3.55
1483 1577 5.178809 CCATGATCATGTATGCAGTAGTGTG 59.821 44.000 29.23 9.15 37.11 3.82
1582 1676 2.551887 TGCGTATGTGCACTCATTTTGT 59.448 40.909 19.41 0.00 40.62 2.83
1649 2063 0.943673 TCGTTCCTCGACAACGTACA 59.056 50.000 19.28 3.67 45.50 2.90
1687 2101 4.543689 TCCCTGTCGAGATGGTATTTACT 58.456 43.478 3.83 0.00 0.00 2.24
1691 2105 6.700520 CCCTGTCGAGATGGTATTTACTTTAC 59.299 42.308 0.00 0.00 0.00 2.01
1703 2117 6.646653 GGTATTTACTTTACGGGTATGGCTAC 59.353 42.308 0.00 0.00 0.00 3.58
1709 2123 2.082140 ACGGGTATGGCTACATCTCA 57.918 50.000 0.00 0.00 38.53 3.27
1714 2128 3.580458 GGGTATGGCTACATCTCAGATGT 59.420 47.826 23.79 23.79 38.53 3.06
1715 2129 4.322349 GGGTATGGCTACATCTCAGATGTC 60.322 50.000 24.00 10.59 38.53 3.06
1716 2130 4.526262 GGTATGGCTACATCTCAGATGTCT 59.474 45.833 24.00 3.13 38.53 3.41
1717 2131 5.712446 GGTATGGCTACATCTCAGATGTCTA 59.288 44.000 24.00 9.18 38.53 2.59
1718 2132 6.209589 GGTATGGCTACATCTCAGATGTCTAA 59.790 42.308 24.00 6.07 38.53 2.10
1719 2133 5.781210 TGGCTACATCTCAGATGTCTAAG 57.219 43.478 24.00 16.45 33.76 2.18
1720 2134 5.449553 TGGCTACATCTCAGATGTCTAAGA 58.550 41.667 24.00 5.30 33.76 2.10
1721 2135 6.073981 TGGCTACATCTCAGATGTCTAAGAT 58.926 40.000 24.00 0.01 33.76 2.40
1722 2136 6.552725 TGGCTACATCTCAGATGTCTAAGATT 59.447 38.462 24.00 0.00 33.76 2.40
1723 2137 7.070447 TGGCTACATCTCAGATGTCTAAGATTT 59.930 37.037 24.00 0.00 33.76 2.17
1724 2138 8.580720 GGCTACATCTCAGATGTCTAAGATTTA 58.419 37.037 24.00 2.30 33.76 1.40
1752 2166 2.301870 TCTTAGTCAAGTGGCGGAACAT 59.698 45.455 0.00 0.00 33.20 2.71
1802 2216 7.734538 ATAAAATTTTGCACGGATCTTTACG 57.265 32.000 13.76 0.00 0.00 3.18
1850 2264 5.943706 TCCAAATTCAATTTGTGCAATGG 57.056 34.783 19.35 5.42 46.22 3.16
1860 2275 5.754543 ATTTGTGCAATGGGAAACAAAAG 57.245 34.783 4.17 0.00 43.49 2.27
1863 2278 3.130633 GTGCAATGGGAAACAAAAGGAC 58.869 45.455 0.00 0.00 0.00 3.85
1871 2286 5.669477 TGGGAAACAAAAGGACAAATTCAG 58.331 37.500 0.00 0.00 0.00 3.02
1934 2349 6.959639 ACTACACCATTCACAACAGATTTT 57.040 33.333 0.00 0.00 0.00 1.82
1935 2350 6.970484 ACTACACCATTCACAACAGATTTTC 58.030 36.000 0.00 0.00 0.00 2.29
1967 2382 9.743057 TTGTTTGTCAAAGTGTATCTAATTTGG 57.257 29.630 0.00 0.00 34.25 3.28
1968 2383 9.126151 TGTTTGTCAAAGTGTATCTAATTTGGA 57.874 29.630 0.00 0.00 34.25 3.53
1971 2386 9.739276 TTGTCAAAGTGTATCTAATTTGGATCT 57.261 29.630 0.00 0.00 34.25 2.75
2007 2428 5.163953 GGTTTGTAGACACATGAGAACATCG 60.164 44.000 0.00 0.00 33.76 3.84
2094 2520 7.275920 AGAAGTGTTGGTATCACCTGATATTC 58.724 38.462 0.00 0.00 39.58 1.75
2095 2521 6.814954 AGTGTTGGTATCACCTGATATTCT 57.185 37.500 0.00 0.00 39.58 2.40
2096 2522 6.821388 AGTGTTGGTATCACCTGATATTCTC 58.179 40.000 0.00 0.00 39.58 2.87
2103 2530 6.071051 GGTATCACCTGATATTCTCCCTCTTC 60.071 46.154 0.00 0.00 39.03 2.87
2114 2541 1.691434 CTCCCTCTTCACCATAGCTCC 59.309 57.143 0.00 0.00 0.00 4.70
2115 2542 1.008327 TCCCTCTTCACCATAGCTCCA 59.992 52.381 0.00 0.00 0.00 3.86
2135 2562 6.455360 TCCATGGCTCACAAAATTATTCTC 57.545 37.500 6.96 0.00 0.00 2.87
2136 2563 5.360714 TCCATGGCTCACAAAATTATTCTCC 59.639 40.000 6.96 0.00 0.00 3.71
2141 2574 7.734942 TGGCTCACAAAATTATTCTCCTTTTT 58.265 30.769 0.00 0.00 0.00 1.94
2164 2597 1.985159 TGTGATAACCTCCAGGCAGTT 59.015 47.619 0.00 0.19 39.32 3.16
2170 2603 5.427157 TGATAACCTCCAGGCAGTTTATACA 59.573 40.000 0.00 0.00 39.32 2.29
2171 2604 4.650972 AACCTCCAGGCAGTTTATACAA 57.349 40.909 0.00 0.00 39.32 2.41
2221 2654 2.223688 CGTCAGGGATAGAGCTTCACTG 60.224 54.545 9.50 9.50 44.40 3.66
2253 2686 2.552373 CCTCTAAAGCTTCCGGGTTTGT 60.552 50.000 0.00 0.00 44.14 2.83
2254 2687 3.307199 CCTCTAAAGCTTCCGGGTTTGTA 60.307 47.826 0.00 0.00 44.14 2.41
2255 2688 4.514401 CTCTAAAGCTTCCGGGTTTGTAT 58.486 43.478 0.00 0.00 44.14 2.29
2256 2689 4.510571 TCTAAAGCTTCCGGGTTTGTATC 58.489 43.478 0.00 0.00 44.14 2.24
2257 2690 2.871096 AAGCTTCCGGGTTTGTATCA 57.129 45.000 0.00 0.00 30.77 2.15
2258 2691 3.366052 AAGCTTCCGGGTTTGTATCAT 57.634 42.857 0.00 0.00 30.77 2.45
2259 2692 2.643551 AGCTTCCGGGTTTGTATCATG 58.356 47.619 0.00 0.00 0.00 3.07
2260 2693 2.238646 AGCTTCCGGGTTTGTATCATGA 59.761 45.455 0.00 0.00 0.00 3.07
2261 2694 2.614057 GCTTCCGGGTTTGTATCATGAG 59.386 50.000 0.00 0.00 0.00 2.90
2262 2695 3.681594 GCTTCCGGGTTTGTATCATGAGA 60.682 47.826 0.00 0.00 0.00 3.27
2270 2703 6.116126 GGGTTTGTATCATGAGATATAGGGC 58.884 44.000 0.09 0.00 38.88 5.19
2289 2722 3.206964 GGCCTCCTATTTCACACTTAGC 58.793 50.000 0.00 0.00 0.00 3.09
2301 2734 4.487948 TCACACTTAGCGCGTTAAATAGT 58.512 39.130 16.26 8.29 0.00 2.12
2302 2735 4.925054 TCACACTTAGCGCGTTAAATAGTT 59.075 37.500 16.26 0.86 0.00 2.24
2303 2736 5.061311 TCACACTTAGCGCGTTAAATAGTTC 59.939 40.000 16.26 0.00 0.00 3.01
2304 2737 4.925054 ACACTTAGCGCGTTAAATAGTTCA 59.075 37.500 16.26 0.00 0.00 3.18
2305 2738 5.061808 ACACTTAGCGCGTTAAATAGTTCAG 59.938 40.000 16.26 4.85 0.00 3.02
2306 2739 5.061808 CACTTAGCGCGTTAAATAGTTCAGT 59.938 40.000 16.26 5.47 0.00 3.41
2307 2740 5.287992 ACTTAGCGCGTTAAATAGTTCAGTC 59.712 40.000 16.26 0.00 0.00 3.51
2309 2742 3.612860 AGCGCGTTAAATAGTTCAGTCAG 59.387 43.478 8.43 0.00 0.00 3.51
2313 2771 4.250464 CGTTAAATAGTTCAGTCAGCCCA 58.750 43.478 0.00 0.00 0.00 5.36
2388 2846 6.616774 TTCATTTTTCAAATTGGTTCCAGC 57.383 33.333 0.00 0.00 0.00 4.85
2392 2850 7.440856 TCATTTTTCAAATTGGTTCCAGCTTAC 59.559 33.333 0.00 0.00 0.00 2.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.958091 CAGGAAAATGCGACCACCAA 59.042 50.000 0.00 0.00 0.00 3.67
1 2 0.893270 CCAGGAAAATGCGACCACCA 60.893 55.000 0.00 0.00 0.00 4.17
2 3 0.893727 ACCAGGAAAATGCGACCACC 60.894 55.000 0.00 0.00 0.00 4.61
3 4 0.958822 AACCAGGAAAATGCGACCAC 59.041 50.000 0.00 0.00 0.00 4.16
4 5 1.698506 AAACCAGGAAAATGCGACCA 58.301 45.000 0.00 0.00 0.00 4.02
5 6 2.812358 AAAACCAGGAAAATGCGACC 57.188 45.000 0.00 0.00 0.00 4.79
6 7 6.779115 AAAATAAAACCAGGAAAATGCGAC 57.221 33.333 0.00 0.00 0.00 5.19
7 8 7.093992 CCTAAAATAAAACCAGGAAAATGCGA 58.906 34.615 0.00 0.00 0.00 5.10
8 9 6.183360 GCCTAAAATAAAACCAGGAAAATGCG 60.183 38.462 0.00 0.00 0.00 4.73
9 10 6.093495 GGCCTAAAATAAAACCAGGAAAATGC 59.907 38.462 0.00 0.00 0.00 3.56
10 11 7.164803 TGGCCTAAAATAAAACCAGGAAAATG 58.835 34.615 3.32 0.00 0.00 2.32
11 12 7.323052 TGGCCTAAAATAAAACCAGGAAAAT 57.677 32.000 3.32 0.00 0.00 1.82
12 13 6.749036 TGGCCTAAAATAAAACCAGGAAAA 57.251 33.333 3.32 0.00 0.00 2.29
13 14 6.943899 ATGGCCTAAAATAAAACCAGGAAA 57.056 33.333 3.32 0.00 0.00 3.13
14 15 6.350612 CGAATGGCCTAAAATAAAACCAGGAA 60.351 38.462 3.32 0.00 0.00 3.36
15 16 5.126384 CGAATGGCCTAAAATAAAACCAGGA 59.874 40.000 3.32 0.00 0.00 3.86
16 17 5.126384 TCGAATGGCCTAAAATAAAACCAGG 59.874 40.000 3.32 0.00 0.00 4.45
17 18 6.033966 GTCGAATGGCCTAAAATAAAACCAG 58.966 40.000 3.32 0.00 0.00 4.00
18 19 5.392165 CGTCGAATGGCCTAAAATAAAACCA 60.392 40.000 3.32 0.00 0.00 3.67
19 20 5.032220 CGTCGAATGGCCTAAAATAAAACC 58.968 41.667 3.32 0.00 0.00 3.27
20 21 5.871539 TCGTCGAATGGCCTAAAATAAAAC 58.128 37.500 3.32 0.00 0.00 2.43
21 22 6.094325 ACATCGTCGAATGGCCTAAAATAAAA 59.906 34.615 3.32 0.00 0.00 1.52
22 23 5.587043 ACATCGTCGAATGGCCTAAAATAAA 59.413 36.000 3.32 0.00 0.00 1.40
23 24 5.007234 CACATCGTCGAATGGCCTAAAATAA 59.993 40.000 3.32 0.00 0.00 1.40
24 25 4.509970 CACATCGTCGAATGGCCTAAAATA 59.490 41.667 3.32 0.00 0.00 1.40
25 26 3.312421 CACATCGTCGAATGGCCTAAAAT 59.688 43.478 3.32 0.00 0.00 1.82
26 27 2.675844 CACATCGTCGAATGGCCTAAAA 59.324 45.455 3.32 0.00 0.00 1.52
27 28 2.276201 CACATCGTCGAATGGCCTAAA 58.724 47.619 3.32 0.00 0.00 1.85
28 29 1.934589 CACATCGTCGAATGGCCTAA 58.065 50.000 3.32 0.00 0.00 2.69
29 30 0.529773 GCACATCGTCGAATGGCCTA 60.530 55.000 3.32 0.00 0.00 3.93
30 31 1.815421 GCACATCGTCGAATGGCCT 60.815 57.895 3.32 0.00 0.00 5.19
31 32 2.709475 GCACATCGTCGAATGGCC 59.291 61.111 0.00 0.00 0.00 5.36
32 33 2.321060 CGCACATCGTCGAATGGC 59.679 61.111 0.00 2.09 0.00 4.40
41 42 0.948623 TTCCCACTGAACGCACATCG 60.949 55.000 0.00 0.00 45.38 3.84
42 43 0.798776 CTTCCCACTGAACGCACATC 59.201 55.000 0.00 0.00 0.00 3.06
43 44 0.396435 TCTTCCCACTGAACGCACAT 59.604 50.000 0.00 0.00 0.00 3.21
44 45 0.179234 TTCTTCCCACTGAACGCACA 59.821 50.000 0.00 0.00 0.00 4.57
45 46 0.868406 CTTCTTCCCACTGAACGCAC 59.132 55.000 0.00 0.00 0.00 5.34
46 47 0.756294 TCTTCTTCCCACTGAACGCA 59.244 50.000 0.00 0.00 0.00 5.24
47 48 1.149148 GTCTTCTTCCCACTGAACGC 58.851 55.000 0.00 0.00 0.00 4.84
48 49 1.269621 ACGTCTTCTTCCCACTGAACG 60.270 52.381 0.00 0.00 0.00 3.95
49 50 2.528041 ACGTCTTCTTCCCACTGAAC 57.472 50.000 0.00 0.00 0.00 3.18
50 51 2.698797 AGAACGTCTTCTTCCCACTGAA 59.301 45.455 0.00 0.00 32.29 3.02
51 52 2.296471 GAGAACGTCTTCTTCCCACTGA 59.704 50.000 0.00 0.00 36.82 3.41
52 53 2.678324 GAGAACGTCTTCTTCCCACTG 58.322 52.381 0.00 0.00 36.82 3.66
53 54 1.269998 CGAGAACGTCTTCTTCCCACT 59.730 52.381 0.00 0.00 36.82 4.00
54 55 1.699343 CGAGAACGTCTTCTTCCCAC 58.301 55.000 0.00 0.00 36.82 4.61
55 56 0.038526 GCGAGAACGTCTTCTTCCCA 60.039 55.000 0.00 0.00 36.82 4.37
56 57 0.736672 GGCGAGAACGTCTTCTTCCC 60.737 60.000 0.00 0.00 41.20 3.97
57 58 1.071567 CGGCGAGAACGTCTTCTTCC 61.072 60.000 0.00 0.00 42.31 3.46
58 59 0.109873 TCGGCGAGAACGTCTTCTTC 60.110 55.000 4.99 0.00 42.31 2.87
59 60 0.386985 GTCGGCGAGAACGTCTTCTT 60.387 55.000 11.20 0.00 42.31 2.52
60 61 1.209640 GTCGGCGAGAACGTCTTCT 59.790 57.895 11.20 0.00 42.31 2.85
61 62 0.445436 TAGTCGGCGAGAACGTCTTC 59.555 55.000 11.20 0.00 42.31 2.87
62 63 0.167689 GTAGTCGGCGAGAACGTCTT 59.832 55.000 11.20 0.00 42.31 3.01
63 64 1.792941 GTAGTCGGCGAGAACGTCT 59.207 57.895 11.20 5.10 42.31 4.18
64 65 1.579626 CGTAGTCGGCGAGAACGTC 60.580 63.158 26.57 9.78 41.98 4.34
65 66 2.029288 TCGTAGTCGGCGAGAACGT 61.029 57.895 30.57 11.03 35.32 3.99
66 67 2.780643 TCGTAGTCGGCGAGAACG 59.219 61.111 28.10 28.10 35.16 3.95
71 72 3.190849 CGTCCTCGTAGTCGGCGA 61.191 66.667 4.99 4.99 37.69 5.54
81 82 2.522638 GCCGCCATAAACGTCCTCG 61.523 63.158 0.00 0.00 43.34 4.63
82 83 0.743345 AAGCCGCCATAAACGTCCTC 60.743 55.000 0.00 0.00 0.00 3.71
83 84 0.743345 GAAGCCGCCATAAACGTCCT 60.743 55.000 0.00 0.00 0.00 3.85
84 85 1.719709 GAAGCCGCCATAAACGTCC 59.280 57.895 0.00 0.00 0.00 4.79
85 86 1.347221 CGAAGCCGCCATAAACGTC 59.653 57.895 0.00 0.00 0.00 4.34
86 87 1.356527 GACGAAGCCGCCATAAACGT 61.357 55.000 0.00 0.00 39.95 3.99
87 88 1.347221 GACGAAGCCGCCATAAACG 59.653 57.895 0.00 0.00 39.95 3.60
88 89 0.800012 TTGACGAAGCCGCCATAAAC 59.200 50.000 0.00 0.00 39.95 2.01
89 90 1.668751 GATTGACGAAGCCGCCATAAA 59.331 47.619 0.00 0.00 39.95 1.40
90 91 1.134521 AGATTGACGAAGCCGCCATAA 60.135 47.619 0.00 0.00 39.95 1.90
91 92 0.464036 AGATTGACGAAGCCGCCATA 59.536 50.000 0.00 0.00 39.95 2.74
92 93 0.811616 GAGATTGACGAAGCCGCCAT 60.812 55.000 0.00 0.00 39.95 4.40
93 94 1.447838 GAGATTGACGAAGCCGCCA 60.448 57.895 0.00 0.00 39.95 5.69
94 95 1.019278 TTGAGATTGACGAAGCCGCC 61.019 55.000 0.00 0.00 39.95 6.13
95 96 0.796312 TTTGAGATTGACGAAGCCGC 59.204 50.000 0.00 0.00 39.95 6.53
96 97 3.747099 ATTTTGAGATTGACGAAGCCG 57.253 42.857 0.00 0.00 42.50 5.52
97 98 6.470235 CACAATATTTTGAGATTGACGAAGCC 59.530 38.462 2.69 0.00 36.69 4.35
98 99 7.023575 ACACAATATTTTGAGATTGACGAAGC 58.976 34.615 8.57 0.00 36.69 3.86
99 100 7.423598 CGACACAATATTTTGAGATTGACGAAG 59.576 37.037 8.57 0.00 36.69 3.79
100 101 7.095397 ACGACACAATATTTTGAGATTGACGAA 60.095 33.333 8.57 0.00 36.69 3.85
101 102 6.367695 ACGACACAATATTTTGAGATTGACGA 59.632 34.615 8.57 0.00 36.69 4.20
102 103 6.462636 CACGACACAATATTTTGAGATTGACG 59.537 38.462 8.57 5.50 36.69 4.35
103 104 7.269084 CACACGACACAATATTTTGAGATTGAC 59.731 37.037 8.57 0.00 36.69 3.18
104 105 7.297391 CACACGACACAATATTTTGAGATTGA 58.703 34.615 8.57 0.00 36.69 2.57
105 106 6.032775 GCACACGACACAATATTTTGAGATTG 59.967 38.462 8.57 3.11 38.70 2.67
106 107 6.086222 GCACACGACACAATATTTTGAGATT 58.914 36.000 8.57 0.00 36.64 2.40
107 108 5.181056 TGCACACGACACAATATTTTGAGAT 59.819 36.000 8.57 0.00 36.64 2.75
108 109 4.513318 TGCACACGACACAATATTTTGAGA 59.487 37.500 8.57 0.00 36.64 3.27
109 110 4.782156 TGCACACGACACAATATTTTGAG 58.218 39.130 8.57 4.83 36.64 3.02
110 111 4.820284 TGCACACGACACAATATTTTGA 57.180 36.364 8.57 0.00 36.64 2.69
111 112 4.916831 ACATGCACACGACACAATATTTTG 59.083 37.500 0.00 0.00 38.86 2.44
112 113 5.119931 ACATGCACACGACACAATATTTT 57.880 34.783 0.00 0.00 0.00 1.82
113 114 4.379394 GGACATGCACACGACACAATATTT 60.379 41.667 0.00 0.00 0.00 1.40
114 115 3.126858 GGACATGCACACGACACAATATT 59.873 43.478 0.00 0.00 0.00 1.28
115 116 2.677836 GGACATGCACACGACACAATAT 59.322 45.455 0.00 0.00 0.00 1.28
116 117 2.073056 GGACATGCACACGACACAATA 58.927 47.619 0.00 0.00 0.00 1.90
117 118 0.874390 GGACATGCACACGACACAAT 59.126 50.000 0.00 0.00 0.00 2.71
118 119 0.179059 AGGACATGCACACGACACAA 60.179 50.000 0.00 0.00 0.00 3.33
119 120 0.179059 AAGGACATGCACACGACACA 60.179 50.000 0.00 0.00 0.00 3.72
120 121 0.512952 GAAGGACATGCACACGACAC 59.487 55.000 0.00 0.00 0.00 3.67
121 122 0.943835 CGAAGGACATGCACACGACA 60.944 55.000 0.00 0.00 0.00 4.35
122 123 1.781555 CGAAGGACATGCACACGAC 59.218 57.895 0.00 0.00 0.00 4.34
123 124 2.027073 GCGAAGGACATGCACACGA 61.027 57.895 0.00 0.00 0.00 4.35
124 125 1.638388 ATGCGAAGGACATGCACACG 61.638 55.000 0.00 0.00 42.11 4.49
125 126 0.179181 CATGCGAAGGACATGCACAC 60.179 55.000 0.00 0.00 42.11 3.82
126 127 1.307355 CCATGCGAAGGACATGCACA 61.307 55.000 0.00 0.00 42.89 4.57
127 128 1.308069 ACCATGCGAAGGACATGCAC 61.308 55.000 0.00 0.00 42.89 4.57
128 129 0.608856 AACCATGCGAAGGACATGCA 60.609 50.000 0.00 0.00 42.89 3.96
129 130 0.179156 CAACCATGCGAAGGACATGC 60.179 55.000 0.00 0.00 42.89 4.06
130 131 1.399440 CTCAACCATGCGAAGGACATG 59.601 52.381 0.00 0.00 43.67 3.21
131 132 1.003580 ACTCAACCATGCGAAGGACAT 59.996 47.619 0.00 0.00 0.00 3.06
132 133 0.396435 ACTCAACCATGCGAAGGACA 59.604 50.000 0.00 0.00 0.00 4.02
133 134 0.798776 CACTCAACCATGCGAAGGAC 59.201 55.000 0.00 0.00 0.00 3.85
134 135 0.396435 ACACTCAACCATGCGAAGGA 59.604 50.000 0.00 0.00 0.00 3.36
135 136 2.093306 TACACTCAACCATGCGAAGG 57.907 50.000 0.00 0.00 0.00 3.46
136 137 3.002791 ACATACACTCAACCATGCGAAG 58.997 45.455 0.00 0.00 0.00 3.79
137 138 2.741517 CACATACACTCAACCATGCGAA 59.258 45.455 0.00 0.00 0.00 4.70
138 139 2.345876 CACATACACTCAACCATGCGA 58.654 47.619 0.00 0.00 0.00 5.10
139 140 1.202065 GCACATACACTCAACCATGCG 60.202 52.381 0.00 0.00 0.00 4.73
140 141 1.202065 CGCACATACACTCAACCATGC 60.202 52.381 0.00 0.00 0.00 4.06
141 142 2.076100 ACGCACATACACTCAACCATG 58.924 47.619 0.00 0.00 0.00 3.66
142 143 2.076100 CACGCACATACACTCAACCAT 58.924 47.619 0.00 0.00 0.00 3.55
143 144 1.202592 ACACGCACATACACTCAACCA 60.203 47.619 0.00 0.00 0.00 3.67
144 145 1.508632 ACACGCACATACACTCAACC 58.491 50.000 0.00 0.00 0.00 3.77
145 146 3.571571 TCTACACGCACATACACTCAAC 58.428 45.455 0.00 0.00 0.00 3.18
146 147 3.926821 TCTACACGCACATACACTCAA 57.073 42.857 0.00 0.00 0.00 3.02
147 148 5.570234 TTATCTACACGCACATACACTCA 57.430 39.130 0.00 0.00 0.00 3.41
148 149 4.441415 GCTTATCTACACGCACATACACTC 59.559 45.833 0.00 0.00 0.00 3.51
149 150 4.142249 TGCTTATCTACACGCACATACACT 60.142 41.667 0.00 0.00 0.00 3.55
150 151 4.109766 TGCTTATCTACACGCACATACAC 58.890 43.478 0.00 0.00 0.00 2.90
151 152 4.379339 TGCTTATCTACACGCACATACA 57.621 40.909 0.00 0.00 0.00 2.29
152 153 4.386049 GGATGCTTATCTACACGCACATAC 59.614 45.833 0.00 0.00 34.93 2.39
153 154 4.556233 GGATGCTTATCTACACGCACATA 58.444 43.478 0.00 0.00 34.93 2.29
154 155 3.393800 GGATGCTTATCTACACGCACAT 58.606 45.455 0.00 0.00 34.93 3.21
155 156 2.798145 CGGATGCTTATCTACACGCACA 60.798 50.000 0.00 0.00 34.93 4.57
156 157 1.787155 CGGATGCTTATCTACACGCAC 59.213 52.381 0.00 0.00 34.93 5.34
157 158 1.868109 GCGGATGCTTATCTACACGCA 60.868 52.381 0.00 0.00 44.52 5.24
158 159 0.784778 GCGGATGCTTATCTACACGC 59.215 55.000 0.00 0.00 38.39 5.34
159 160 2.134201 TGCGGATGCTTATCTACACG 57.866 50.000 0.00 0.00 43.34 4.49
160 161 4.273480 ACAAATGCGGATGCTTATCTACAC 59.727 41.667 0.00 0.00 43.34 2.90
161 162 4.450976 ACAAATGCGGATGCTTATCTACA 58.549 39.130 0.00 0.00 43.34 2.74
162 163 6.727824 ATACAAATGCGGATGCTTATCTAC 57.272 37.500 0.00 0.00 43.34 2.59
163 164 6.710295 ACAATACAAATGCGGATGCTTATCTA 59.290 34.615 0.00 0.00 43.34 1.98
164 165 5.532406 ACAATACAAATGCGGATGCTTATCT 59.468 36.000 0.00 0.00 43.34 1.98
165 166 5.626543 CACAATACAAATGCGGATGCTTATC 59.373 40.000 0.00 0.00 43.34 1.75
166 167 5.067674 ACACAATACAAATGCGGATGCTTAT 59.932 36.000 0.00 0.00 43.34 1.73
167 168 4.397730 ACACAATACAAATGCGGATGCTTA 59.602 37.500 0.00 0.00 43.34 3.09
168 169 3.193267 ACACAATACAAATGCGGATGCTT 59.807 39.130 0.00 0.00 43.34 3.91
169 170 2.754552 ACACAATACAAATGCGGATGCT 59.245 40.909 0.00 0.00 43.34 3.79
170 171 3.108144 GACACAATACAAATGCGGATGC 58.892 45.455 0.00 0.00 43.20 3.91
171 172 3.128415 TGGACACAATACAAATGCGGATG 59.872 43.478 0.00 0.00 0.00 3.51
172 173 3.351740 TGGACACAATACAAATGCGGAT 58.648 40.909 0.00 0.00 0.00 4.18
173 174 2.784347 TGGACACAATACAAATGCGGA 58.216 42.857 0.00 0.00 0.00 5.54
174 175 3.567576 TTGGACACAATACAAATGCGG 57.432 42.857 0.00 0.00 0.00 5.69
175 176 5.896922 TTTTTGGACACAATACAAATGCG 57.103 34.783 0.00 0.00 36.29 4.73
194 195 7.170828 GCGGTGATTAAAAGAACCTGAATTTTT 59.829 33.333 0.00 0.00 0.00 1.94
195 196 6.645003 GCGGTGATTAAAAGAACCTGAATTTT 59.355 34.615 0.00 0.00 0.00 1.82
196 197 6.156519 GCGGTGATTAAAAGAACCTGAATTT 58.843 36.000 0.00 0.00 0.00 1.82
197 198 5.242838 TGCGGTGATTAAAAGAACCTGAATT 59.757 36.000 0.00 0.00 0.00 2.17
198 199 4.764823 TGCGGTGATTAAAAGAACCTGAAT 59.235 37.500 0.00 0.00 0.00 2.57
199 200 4.023536 GTGCGGTGATTAAAAGAACCTGAA 60.024 41.667 0.00 0.00 0.00 3.02
200 201 3.500680 GTGCGGTGATTAAAAGAACCTGA 59.499 43.478 0.00 0.00 0.00 3.86
201 202 3.502211 AGTGCGGTGATTAAAAGAACCTG 59.498 43.478 0.00 0.00 0.00 4.00
202 203 3.751518 AGTGCGGTGATTAAAAGAACCT 58.248 40.909 0.00 0.00 0.00 3.50
203 204 4.436986 GCTAGTGCGGTGATTAAAAGAACC 60.437 45.833 0.00 0.00 0.00 3.62
204 205 4.392138 AGCTAGTGCGGTGATTAAAAGAAC 59.608 41.667 0.00 0.00 45.42 3.01
205 206 4.391830 CAGCTAGTGCGGTGATTAAAAGAA 59.608 41.667 0.00 0.00 45.42 2.52
206 207 3.932710 CAGCTAGTGCGGTGATTAAAAGA 59.067 43.478 0.00 0.00 45.42 2.52
207 208 3.684788 ACAGCTAGTGCGGTGATTAAAAG 59.315 43.478 0.00 0.00 45.32 2.27
208 209 3.670625 ACAGCTAGTGCGGTGATTAAAA 58.329 40.909 0.00 0.00 45.32 1.52
209 210 3.328382 ACAGCTAGTGCGGTGATTAAA 57.672 42.857 0.00 0.00 45.32 1.52
210 211 3.259064 GAACAGCTAGTGCGGTGATTAA 58.741 45.455 0.00 0.00 46.27 1.40
211 212 2.232696 TGAACAGCTAGTGCGGTGATTA 59.767 45.455 0.00 0.00 46.27 1.75
212 213 1.001974 TGAACAGCTAGTGCGGTGATT 59.998 47.619 0.00 0.00 46.27 2.57
213 214 0.608130 TGAACAGCTAGTGCGGTGAT 59.392 50.000 0.00 0.00 46.27 3.06
214 215 0.391228 TTGAACAGCTAGTGCGGTGA 59.609 50.000 0.00 0.00 46.27 4.02
215 216 1.442769 ATTGAACAGCTAGTGCGGTG 58.557 50.000 0.00 0.00 46.27 4.94
217 218 2.076100 TCAATTGAACAGCTAGTGCGG 58.924 47.619 5.45 0.00 45.42 5.69
218 219 3.371898 TGATCAATTGAACAGCTAGTGCG 59.628 43.478 13.09 0.00 45.42 5.34
219 220 4.952262 TGATCAATTGAACAGCTAGTGC 57.048 40.909 13.09 0.00 40.05 4.40
220 221 5.742453 GCATTGATCAATTGAACAGCTAGTG 59.258 40.000 18.41 12.76 0.00 2.74
221 222 5.651139 AGCATTGATCAATTGAACAGCTAGT 59.349 36.000 22.70 7.25 30.52 2.57
222 223 6.132791 AGCATTGATCAATTGAACAGCTAG 57.867 37.500 22.70 13.79 30.52 3.42
223 224 7.628769 TTAGCATTGATCAATTGAACAGCTA 57.371 32.000 23.91 23.91 33.06 3.32
224 225 6.519679 TTAGCATTGATCAATTGAACAGCT 57.480 33.333 25.36 25.36 34.47 4.24
225 226 6.255020 CCTTTAGCATTGATCAATTGAACAGC 59.745 38.462 18.41 16.41 0.00 4.40
226 227 7.487189 GTCCTTTAGCATTGATCAATTGAACAG 59.513 37.037 18.41 11.36 0.00 3.16
227 228 7.039853 TGTCCTTTAGCATTGATCAATTGAACA 60.040 33.333 18.41 13.50 0.00 3.18
228 229 7.315142 TGTCCTTTAGCATTGATCAATTGAAC 58.685 34.615 18.41 10.68 0.00 3.18
229 230 7.363181 CCTGTCCTTTAGCATTGATCAATTGAA 60.363 37.037 18.41 9.76 0.00 2.69
230 231 6.095860 CCTGTCCTTTAGCATTGATCAATTGA 59.904 38.462 18.41 11.26 0.00 2.57
231 232 6.095860 TCCTGTCCTTTAGCATTGATCAATTG 59.904 38.462 18.41 14.19 0.00 2.32
232 233 6.189859 TCCTGTCCTTTAGCATTGATCAATT 58.810 36.000 18.41 7.97 0.00 2.32
233 234 5.759059 TCCTGTCCTTTAGCATTGATCAAT 58.241 37.500 15.36 15.36 0.00 2.57
234 235 5.178096 TCCTGTCCTTTAGCATTGATCAA 57.822 39.130 11.26 11.26 0.00 2.57
235 236 4.842531 TCCTGTCCTTTAGCATTGATCA 57.157 40.909 0.00 0.00 0.00 2.92
236 237 4.450419 CGATCCTGTCCTTTAGCATTGATC 59.550 45.833 0.00 0.00 0.00 2.92
237 238 4.141620 ACGATCCTGTCCTTTAGCATTGAT 60.142 41.667 0.00 0.00 0.00 2.57
238 239 3.197766 ACGATCCTGTCCTTTAGCATTGA 59.802 43.478 0.00 0.00 0.00 2.57
239 240 3.535561 ACGATCCTGTCCTTTAGCATTG 58.464 45.455 0.00 0.00 0.00 2.82
240 241 3.914426 ACGATCCTGTCCTTTAGCATT 57.086 42.857 0.00 0.00 0.00 3.56
241 242 3.432326 GGAACGATCCTGTCCTTTAGCAT 60.432 47.826 4.14 0.00 42.93 3.79
242 243 2.093658 GGAACGATCCTGTCCTTTAGCA 60.094 50.000 4.14 0.00 42.93 3.49
243 244 2.552031 GGAACGATCCTGTCCTTTAGC 58.448 52.381 4.14 0.00 42.93 3.09
244 245 2.500098 TGGGAACGATCCTGTCCTTTAG 59.500 50.000 11.90 0.00 45.77 1.85
245 246 2.542550 TGGGAACGATCCTGTCCTTTA 58.457 47.619 11.90 0.00 45.77 1.85
246 247 1.358152 TGGGAACGATCCTGTCCTTT 58.642 50.000 11.90 0.00 45.77 3.11
247 248 1.358152 TTGGGAACGATCCTGTCCTT 58.642 50.000 11.90 0.00 45.77 3.36
248 249 1.584724 ATTGGGAACGATCCTGTCCT 58.415 50.000 11.90 0.00 45.77 3.85
249 250 2.420058 AATTGGGAACGATCCTGTCC 57.580 50.000 11.90 0.00 45.77 4.02
250 251 2.159379 GCAAATTGGGAACGATCCTGTC 60.159 50.000 11.90 0.00 45.77 3.51
251 252 1.818674 GCAAATTGGGAACGATCCTGT 59.181 47.619 11.90 0.00 45.77 4.00
252 253 1.818060 TGCAAATTGGGAACGATCCTG 59.182 47.619 11.90 2.71 45.77 3.86
253 254 2.214376 TGCAAATTGGGAACGATCCT 57.786 45.000 11.90 0.00 45.77 3.24
254 255 3.189285 CATTGCAAATTGGGAACGATCC 58.811 45.455 1.71 2.47 45.77 3.36
255 256 3.189285 CCATTGCAAATTGGGAACGATC 58.811 45.455 10.73 0.00 31.38 3.69
256 257 2.566724 ACCATTGCAAATTGGGAACGAT 59.433 40.909 20.49 0.00 37.32 3.73
257 258 1.967066 ACCATTGCAAATTGGGAACGA 59.033 42.857 20.49 0.00 37.32 3.85
258 259 2.067766 CACCATTGCAAATTGGGAACG 58.932 47.619 20.49 5.23 37.32 3.95
271 272 5.840243 TTTAATCTCCATCAGCACCATTG 57.160 39.130 0.00 0.00 0.00 2.82
272 273 5.361857 CCTTTTAATCTCCATCAGCACCATT 59.638 40.000 0.00 0.00 0.00 3.16
273 274 4.891756 CCTTTTAATCTCCATCAGCACCAT 59.108 41.667 0.00 0.00 0.00 3.55
274 275 4.272489 CCTTTTAATCTCCATCAGCACCA 58.728 43.478 0.00 0.00 0.00 4.17
275 276 3.067320 GCCTTTTAATCTCCATCAGCACC 59.933 47.826 0.00 0.00 0.00 5.01
276 277 3.950395 AGCCTTTTAATCTCCATCAGCAC 59.050 43.478 0.00 0.00 0.00 4.40
277 278 4.240881 AGCCTTTTAATCTCCATCAGCA 57.759 40.909 0.00 0.00 0.00 4.41
278 279 5.588958 AAAGCCTTTTAATCTCCATCAGC 57.411 39.130 0.00 0.00 0.00 4.26
302 303 2.123988 AATCTCACCGCGCGCAAAAA 62.124 50.000 32.61 12.47 0.00 1.94
303 304 1.292571 TAATCTCACCGCGCGCAAAA 61.293 50.000 32.61 12.08 0.00 2.44
304 305 1.292571 TTAATCTCACCGCGCGCAAA 61.293 50.000 32.61 11.70 0.00 3.68
305 306 1.292571 TTTAATCTCACCGCGCGCAA 61.293 50.000 32.61 11.50 0.00 4.85
306 307 1.292571 TTTTAATCTCACCGCGCGCA 61.293 50.000 32.61 11.00 0.00 6.09
307 308 0.586502 CTTTTAATCTCACCGCGCGC 60.587 55.000 27.36 23.91 0.00 6.86
308 309 0.026285 CCTTTTAATCTCACCGCGCG 59.974 55.000 25.67 25.67 0.00 6.86
309 310 0.248094 GCCTTTTAATCTCACCGCGC 60.248 55.000 0.00 0.00 0.00 6.86
310 311 1.369625 AGCCTTTTAATCTCACCGCG 58.630 50.000 0.00 0.00 0.00 6.46
311 312 3.850122 AAAGCCTTTTAATCTCACCGC 57.150 42.857 0.00 0.00 0.00 5.68
312 313 4.022329 ACCAAAAGCCTTTTAATCTCACCG 60.022 41.667 1.38 0.00 0.00 4.94
313 314 5.468540 ACCAAAAGCCTTTTAATCTCACC 57.531 39.130 1.38 0.00 0.00 4.02
314 315 7.114388 CGTTAACCAAAAGCCTTTTAATCTCAC 59.886 37.037 1.38 0.00 0.00 3.51
315 316 7.142680 CGTTAACCAAAAGCCTTTTAATCTCA 58.857 34.615 1.38 0.00 0.00 3.27
316 317 6.584942 CCGTTAACCAAAAGCCTTTTAATCTC 59.415 38.462 1.38 0.00 0.00 2.75
317 318 6.265876 TCCGTTAACCAAAAGCCTTTTAATCT 59.734 34.615 1.38 0.00 0.00 2.40
318 319 6.448852 TCCGTTAACCAAAAGCCTTTTAATC 58.551 36.000 1.38 0.00 0.00 1.75
319 320 6.408107 TCCGTTAACCAAAAGCCTTTTAAT 57.592 33.333 1.38 0.00 0.00 1.40
320 321 5.848833 TCCGTTAACCAAAAGCCTTTTAA 57.151 34.783 1.38 0.00 0.00 1.52
321 322 5.360429 ACTTCCGTTAACCAAAAGCCTTTTA 59.640 36.000 1.38 0.00 0.00 1.52
322 323 4.160814 ACTTCCGTTAACCAAAAGCCTTTT 59.839 37.500 0.00 0.00 0.00 2.27
323 324 3.702548 ACTTCCGTTAACCAAAAGCCTTT 59.297 39.130 0.00 0.00 0.00 3.11
324 325 3.067601 CACTTCCGTTAACCAAAAGCCTT 59.932 43.478 0.00 0.00 0.00 4.35
325 326 2.621526 CACTTCCGTTAACCAAAAGCCT 59.378 45.455 0.00 0.00 0.00 4.58
326 327 2.359848 ACACTTCCGTTAACCAAAAGCC 59.640 45.455 0.00 0.00 0.00 4.35
327 328 3.703286 ACACTTCCGTTAACCAAAAGC 57.297 42.857 0.00 0.00 0.00 3.51
328 329 6.259387 AGTTCTACACTTCCGTTAACCAAAAG 59.741 38.462 0.00 4.16 27.32 2.27
329 330 6.114767 AGTTCTACACTTCCGTTAACCAAAA 58.885 36.000 0.00 0.00 27.32 2.44
330 331 5.673514 AGTTCTACACTTCCGTTAACCAAA 58.326 37.500 0.00 0.00 27.32 3.28
331 332 5.280654 AGTTCTACACTTCCGTTAACCAA 57.719 39.130 0.00 0.00 27.32 3.67
332 333 4.942761 AGTTCTACACTTCCGTTAACCA 57.057 40.909 0.00 0.00 27.32 3.67
333 334 6.018589 AGTAGTTCTACACTTCCGTTAACC 57.981 41.667 11.73 0.00 36.88 2.85
334 335 6.672147 TGAGTAGTTCTACACTTCCGTTAAC 58.328 40.000 11.73 0.00 36.88 2.01
335 336 6.882610 TGAGTAGTTCTACACTTCCGTTAA 57.117 37.500 11.73 0.00 36.88 2.01
336 337 8.743085 ATATGAGTAGTTCTACACTTCCGTTA 57.257 34.615 11.73 0.00 36.88 3.18
337 338 5.979288 ATGAGTAGTTCTACACTTCCGTT 57.021 39.130 11.73 0.00 36.88 4.44
338 339 7.642082 AATATGAGTAGTTCTACACTTCCGT 57.358 36.000 11.73 1.59 36.88 4.69
339 340 7.376336 CGAAATATGAGTAGTTCTACACTTCCG 59.624 40.741 11.73 2.72 36.88 4.30
340 341 8.404000 TCGAAATATGAGTAGTTCTACACTTCC 58.596 37.037 11.73 0.00 36.88 3.46
341 342 9.440784 CTCGAAATATGAGTAGTTCTACACTTC 57.559 37.037 11.73 5.40 36.88 3.01
342 343 9.175312 TCTCGAAATATGAGTAGTTCTACACTT 57.825 33.333 11.73 6.83 33.83 3.16
343 344 8.734218 TCTCGAAATATGAGTAGTTCTACACT 57.266 34.615 11.73 0.00 33.83 3.55
344 345 7.588488 GCTCTCGAAATATGAGTAGTTCTACAC 59.412 40.741 11.73 6.61 33.83 2.90
345 346 7.282450 TGCTCTCGAAATATGAGTAGTTCTACA 59.718 37.037 11.73 0.00 33.83 2.74
346 347 7.640852 TGCTCTCGAAATATGAGTAGTTCTAC 58.359 38.462 2.14 2.14 33.83 2.59
347 348 7.041030 CCTGCTCTCGAAATATGAGTAGTTCTA 60.041 40.741 13.16 0.00 38.35 2.10
348 349 6.238897 CCTGCTCTCGAAATATGAGTAGTTCT 60.239 42.308 13.16 0.00 38.35 3.01
349 350 5.918011 CCTGCTCTCGAAATATGAGTAGTTC 59.082 44.000 13.16 0.00 38.35 3.01
350 351 5.594725 TCCTGCTCTCGAAATATGAGTAGTT 59.405 40.000 13.16 0.00 38.35 2.24
351 352 5.133941 TCCTGCTCTCGAAATATGAGTAGT 58.866 41.667 13.16 0.00 38.35 2.73
352 353 5.697473 TCCTGCTCTCGAAATATGAGTAG 57.303 43.478 8.99 8.99 39.26 2.57
353 354 7.761038 TTATCCTGCTCTCGAAATATGAGTA 57.239 36.000 1.21 0.00 34.99 2.59
354 355 6.656632 TTATCCTGCTCTCGAAATATGAGT 57.343 37.500 1.21 0.00 34.99 3.41
355 356 7.095910 ACATTATCCTGCTCTCGAAATATGAG 58.904 38.462 0.00 0.00 34.72 2.90
356 357 6.997655 ACATTATCCTGCTCTCGAAATATGA 58.002 36.000 0.00 0.00 0.00 2.15
357 358 7.664082 AACATTATCCTGCTCTCGAAATATG 57.336 36.000 0.00 0.00 0.00 1.78
358 359 7.547370 GCTAACATTATCCTGCTCTCGAAATAT 59.453 37.037 0.00 0.00 0.00 1.28
359 360 6.868864 GCTAACATTATCCTGCTCTCGAAATA 59.131 38.462 0.00 0.00 0.00 1.40
360 361 5.698545 GCTAACATTATCCTGCTCTCGAAAT 59.301 40.000 0.00 0.00 0.00 2.17
361 362 5.050490 GCTAACATTATCCTGCTCTCGAAA 58.950 41.667 0.00 0.00 0.00 3.46
362 363 4.501571 GGCTAACATTATCCTGCTCTCGAA 60.502 45.833 0.00 0.00 0.00 3.71
363 364 3.005897 GGCTAACATTATCCTGCTCTCGA 59.994 47.826 0.00 0.00 0.00 4.04
364 365 3.243873 TGGCTAACATTATCCTGCTCTCG 60.244 47.826 0.00 0.00 0.00 4.04
365 366 4.342862 TGGCTAACATTATCCTGCTCTC 57.657 45.455 0.00 0.00 0.00 3.20
366 367 4.103785 ACATGGCTAACATTATCCTGCTCT 59.896 41.667 0.00 0.00 37.84 4.09
367 368 4.392940 ACATGGCTAACATTATCCTGCTC 58.607 43.478 0.00 0.00 37.84 4.26
368 369 4.443978 ACATGGCTAACATTATCCTGCT 57.556 40.909 0.00 0.00 37.84 4.24
369 370 5.520376 AAACATGGCTAACATTATCCTGC 57.480 39.130 0.00 0.00 37.84 4.85
370 371 8.450578 TCTAAAACATGGCTAACATTATCCTG 57.549 34.615 0.00 0.00 37.84 3.86
371 372 8.903820 GTTCTAAAACATGGCTAACATTATCCT 58.096 33.333 0.00 0.00 37.84 3.24
372 373 8.903820 AGTTCTAAAACATGGCTAACATTATCC 58.096 33.333 0.00 0.00 37.84 2.59
375 376 9.290988 TGAAGTTCTAAAACATGGCTAACATTA 57.709 29.630 4.17 0.00 37.84 1.90
376 377 8.177119 TGAAGTTCTAAAACATGGCTAACATT 57.823 30.769 4.17 0.00 37.84 2.71
377 378 7.094205 CCTGAAGTTCTAAAACATGGCTAACAT 60.094 37.037 4.17 0.00 41.57 2.71
378 379 6.206634 CCTGAAGTTCTAAAACATGGCTAACA 59.793 38.462 4.17 0.00 37.88 2.41
379 380 6.430000 TCCTGAAGTTCTAAAACATGGCTAAC 59.570 38.462 4.17 0.00 37.88 2.34
380 381 6.539173 TCCTGAAGTTCTAAAACATGGCTAA 58.461 36.000 4.17 0.00 37.88 3.09
381 382 6.013725 TCTCCTGAAGTTCTAAAACATGGCTA 60.014 38.462 4.17 0.00 37.88 3.93
382 383 4.985538 TCCTGAAGTTCTAAAACATGGCT 58.014 39.130 4.17 0.00 37.88 4.75
383 384 5.003804 TCTCCTGAAGTTCTAAAACATGGC 58.996 41.667 4.17 0.00 37.88 4.40
384 385 6.347725 CGTTCTCCTGAAGTTCTAAAACATGG 60.348 42.308 4.17 0.00 37.88 3.66
385 386 6.423905 TCGTTCTCCTGAAGTTCTAAAACATG 59.576 38.462 4.17 0.00 37.88 3.21
386 387 6.522054 TCGTTCTCCTGAAGTTCTAAAACAT 58.478 36.000 4.17 0.00 37.88 2.71
387 388 5.909477 TCGTTCTCCTGAAGTTCTAAAACA 58.091 37.500 4.17 0.00 37.88 2.83
388 389 6.073711 CCTTCGTTCTCCTGAAGTTCTAAAAC 60.074 42.308 4.17 1.72 39.93 2.43
389 390 5.989777 CCTTCGTTCTCCTGAAGTTCTAAAA 59.010 40.000 4.17 0.00 39.93 1.52
390 391 5.303589 TCCTTCGTTCTCCTGAAGTTCTAAA 59.696 40.000 4.17 0.00 39.93 1.85
391 392 4.831155 TCCTTCGTTCTCCTGAAGTTCTAA 59.169 41.667 4.17 0.00 39.93 2.10
392 393 4.217983 GTCCTTCGTTCTCCTGAAGTTCTA 59.782 45.833 4.17 0.00 39.93 2.10
393 394 3.006003 GTCCTTCGTTCTCCTGAAGTTCT 59.994 47.826 4.17 0.00 39.93 3.01
394 395 3.318886 GTCCTTCGTTCTCCTGAAGTTC 58.681 50.000 0.00 0.00 39.93 3.01
395 396 2.037381 GGTCCTTCGTTCTCCTGAAGTT 59.963 50.000 1.80 0.00 39.93 2.66
396 397 1.619332 GGTCCTTCGTTCTCCTGAAGT 59.381 52.381 1.80 0.00 39.93 3.01
397 398 1.618837 TGGTCCTTCGTTCTCCTGAAG 59.381 52.381 0.00 0.00 40.97 3.02
398 399 1.712056 TGGTCCTTCGTTCTCCTGAA 58.288 50.000 0.00 0.00 0.00 3.02
399 400 1.938585 ATGGTCCTTCGTTCTCCTGA 58.061 50.000 0.00 0.00 0.00 3.86
400 401 4.122776 CAATATGGTCCTTCGTTCTCCTG 58.877 47.826 0.00 0.00 0.00 3.86
401 402 3.775316 ACAATATGGTCCTTCGTTCTCCT 59.225 43.478 0.00 0.00 0.00 3.69
402 403 3.871594 CACAATATGGTCCTTCGTTCTCC 59.128 47.826 0.00 0.00 0.00 3.71
403 404 3.871594 CCACAATATGGTCCTTCGTTCTC 59.128 47.826 0.00 0.00 44.46 2.87
404 405 3.873910 CCACAATATGGTCCTTCGTTCT 58.126 45.455 0.00 0.00 44.46 3.01
416 417 5.472478 CAGAATGGATCCAGACCACAATATG 59.528 44.000 21.33 5.38 40.36 1.78
417 418 5.628130 CAGAATGGATCCAGACCACAATAT 58.372 41.667 21.33 0.00 40.36 1.28
418 419 5.039920 CAGAATGGATCCAGACCACAATA 57.960 43.478 21.33 0.00 40.36 1.90
419 420 3.894759 CAGAATGGATCCAGACCACAAT 58.105 45.455 21.33 0.00 40.36 2.71
420 421 3.354948 CAGAATGGATCCAGACCACAA 57.645 47.619 21.33 0.00 40.36 3.33
529 530 9.388346 CACATTTTATTTTGCGAGTAAGTTGTA 57.612 29.630 0.00 0.00 0.00 2.41
530 531 7.381139 CCACATTTTATTTTGCGAGTAAGTTGT 59.619 33.333 0.00 0.00 0.00 3.32
531 532 7.619161 GCCACATTTTATTTTGCGAGTAAGTTG 60.619 37.037 0.00 0.00 0.00 3.16
552 580 0.178301 TCACTGTTAACCGTGCCACA 59.822 50.000 21.40 5.46 0.00 4.17
570 601 2.750712 TGTAAAAGGGCGCCATAAACTC 59.249 45.455 30.85 8.87 0.00 3.01
604 641 5.066893 ACAGGTACGTACATATGAACATCGT 59.933 40.000 26.02 13.36 0.00 3.73
621 687 2.427360 CGTGCACGTACACAGGTAC 58.573 57.895 30.50 0.00 45.18 3.34
681 753 2.477825 CGATCGGCTCAGTGATGATTT 58.522 47.619 7.38 0.00 0.00 2.17
690 762 4.732106 GGTAACCGATCGGCTCAG 57.268 61.111 33.62 10.51 39.32 3.35
730 802 0.106894 GATGCCCCGCTAGCTAACTT 59.893 55.000 13.93 0.00 0.00 2.66
735 807 0.035458 GTATTGATGCCCCGCTAGCT 59.965 55.000 13.93 0.00 0.00 3.32
758 830 2.026356 TGCAGGTGCCTTAGCTTGATTA 60.026 45.455 0.00 0.00 41.18 1.75
840 915 0.777631 GCGCGTACGTTTCACTGTTA 59.222 50.000 17.90 0.00 42.83 2.41
841 916 1.561250 GCGCGTACGTTTCACTGTT 59.439 52.632 17.90 0.00 42.83 3.16
842 917 2.641783 CGCGCGTACGTTTCACTGT 61.642 57.895 24.19 0.00 42.83 3.55
843 918 2.091421 CGCGCGTACGTTTCACTG 59.909 61.111 24.19 0.00 42.83 3.66
844 919 3.759828 GCGCGCGTACGTTTCACT 61.760 61.111 32.35 0.00 42.83 3.41
845 920 4.764987 GGCGCGCGTACGTTTCAC 62.765 66.667 32.35 10.85 42.83 3.18
864 939 1.975327 CTGGAAGGCGAAGTGGAGA 59.025 57.895 0.00 0.00 0.00 3.71
898 976 0.372334 CACCAGCGGCGTGTTTATAC 59.628 55.000 9.37 0.00 0.00 1.47
954 1032 1.393539 CGATTTGTGGTCGCAAGGTAG 59.606 52.381 0.00 0.00 38.47 3.18
955 1033 1.434555 CGATTTGTGGTCGCAAGGTA 58.565 50.000 0.00 0.00 38.47 3.08
956 1034 2.244000 CGATTTGTGGTCGCAAGGT 58.756 52.632 0.00 0.00 38.47 3.50
962 1040 3.496131 CCCGGCGATTTGTGGTCG 61.496 66.667 9.30 0.00 41.77 4.79
964 1042 3.860930 AAGCCCGGCGATTTGTGGT 62.861 57.895 9.30 0.00 0.00 4.16
1032 1115 1.211969 GGCGACGAACACTAGCAGA 59.788 57.895 0.00 0.00 0.00 4.26
1286 1380 3.670637 ATGGCGATGCAGCAGTCGT 62.671 57.895 20.90 2.81 39.87 4.34
1472 1566 1.044611 TACAGGTGCACACTACTGCA 58.955 50.000 20.43 4.39 45.06 4.41
1474 1568 2.035961 ACAGTACAGGTGCACACTACTG 59.964 50.000 28.72 28.72 40.48 2.74
1505 1599 2.365948 GTCGTGTTATTGCATCGCATG 58.634 47.619 0.00 0.00 38.76 4.06
1514 1608 5.880054 ATTTCCTCAAGGTCGTGTTATTG 57.120 39.130 0.00 0.00 36.34 1.90
1565 1659 5.528043 ACCAAACAAAATGAGTGCACATA 57.472 34.783 21.04 7.63 0.00 2.29
1567 1661 3.883830 ACCAAACAAAATGAGTGCACA 57.116 38.095 21.04 0.00 0.00 4.57
1582 1676 6.201806 GCAAACTGCATATTAACACAACCAAA 59.798 34.615 0.00 0.00 44.26 3.28
1665 2079 4.543689 AGTAAATACCATCTCGACAGGGA 58.456 43.478 0.00 0.00 0.00 4.20
1668 2082 6.417044 CCGTAAAGTAAATACCATCTCGACAG 59.583 42.308 0.00 0.00 0.00 3.51
1669 2083 6.267817 CCGTAAAGTAAATACCATCTCGACA 58.732 40.000 0.00 0.00 0.00 4.35
1670 2084 5.689068 CCCGTAAAGTAAATACCATCTCGAC 59.311 44.000 0.00 0.00 0.00 4.20
1675 2089 6.148315 GCCATACCCGTAAAGTAAATACCATC 59.852 42.308 0.00 0.00 0.00 3.51
1687 2101 3.962063 TGAGATGTAGCCATACCCGTAAA 59.038 43.478 0.00 0.00 0.00 2.01
1691 2105 2.239400 TCTGAGATGTAGCCATACCCG 58.761 52.381 0.00 0.00 0.00 5.28
1703 2117 9.605275 TTGGTTAAATCTTAGACATCTGAGATG 57.395 33.333 20.24 20.24 45.13 2.90
1720 2134 7.574967 CGCCACTTGACTAAGATTTGGTTAAAT 60.575 37.037 0.00 0.00 39.16 1.40
1721 2135 6.293735 CGCCACTTGACTAAGATTTGGTTAAA 60.294 38.462 0.00 0.00 37.36 1.52
1722 2136 5.180492 CGCCACTTGACTAAGATTTGGTTAA 59.820 40.000 0.00 0.00 37.36 2.01
1723 2137 4.693566 CGCCACTTGACTAAGATTTGGTTA 59.306 41.667 0.00 0.00 37.36 2.85
1724 2138 3.502211 CGCCACTTGACTAAGATTTGGTT 59.498 43.478 0.00 0.00 37.36 3.67
1779 2193 6.670233 ACGTAAAGATCCGTGCAAAATTTTA 58.330 32.000 2.44 0.00 35.69 1.52
1850 2264 5.115480 TGCTGAATTTGTCCTTTTGTTTCC 58.885 37.500 0.00 0.00 0.00 3.13
1860 2275 4.874970 ACACTTTCATGCTGAATTTGTCC 58.125 39.130 0.00 0.00 36.11 4.02
1863 2278 6.143438 GTCTTGACACTTTCATGCTGAATTTG 59.857 38.462 0.00 3.76 36.11 2.32
1871 2286 4.207841 GCTTTTGTCTTGACACTTTCATGC 59.792 41.667 2.62 0.00 32.84 4.06
1877 2292 5.581126 TTCATGCTTTTGTCTTGACACTT 57.419 34.783 2.62 0.00 0.00 3.16
1914 2329 4.895297 AGGAAAATCTGTTGTGAATGGTGT 59.105 37.500 0.00 0.00 0.00 4.16
1917 2332 7.790823 AAAAAGGAAAATCTGTTGTGAATGG 57.209 32.000 0.00 0.00 0.00 3.16
1980 2396 5.305902 TGTTCTCATGTGTCTACAAACCCTA 59.694 40.000 0.00 0.00 40.84 3.53
2049 2470 8.748412 CACTTCTCCCATGATACCAATTAAAAA 58.252 33.333 0.00 0.00 0.00 1.94
2050 2471 7.893302 ACACTTCTCCCATGATACCAATTAAAA 59.107 33.333 0.00 0.00 0.00 1.52
2051 2472 7.410174 ACACTTCTCCCATGATACCAATTAAA 58.590 34.615 0.00 0.00 0.00 1.52
2052 2473 6.969043 ACACTTCTCCCATGATACCAATTAA 58.031 36.000 0.00 0.00 0.00 1.40
2053 2474 6.575244 ACACTTCTCCCATGATACCAATTA 57.425 37.500 0.00 0.00 0.00 1.40
2054 2475 5.456921 ACACTTCTCCCATGATACCAATT 57.543 39.130 0.00 0.00 0.00 2.32
2055 2476 5.195940 CAACACTTCTCCCATGATACCAAT 58.804 41.667 0.00 0.00 0.00 3.16
2056 2477 4.567537 CCAACACTTCTCCCATGATACCAA 60.568 45.833 0.00 0.00 0.00 3.67
2057 2478 3.054434 CCAACACTTCTCCCATGATACCA 60.054 47.826 0.00 0.00 0.00 3.25
2058 2479 3.054361 ACCAACACTTCTCCCATGATACC 60.054 47.826 0.00 0.00 0.00 2.73
2059 2480 4.222124 ACCAACACTTCTCCCATGATAC 57.778 45.455 0.00 0.00 0.00 2.24
2071 2492 7.200434 AGAATATCAGGTGATACCAACACTT 57.800 36.000 1.72 0.00 41.95 3.16
2073 2494 5.992217 GGAGAATATCAGGTGATACCAACAC 59.008 44.000 1.72 0.00 41.95 3.32
2094 2520 1.691434 GGAGCTATGGTGAAGAGGGAG 59.309 57.143 0.00 0.00 0.00 4.30
2095 2521 1.008327 TGGAGCTATGGTGAAGAGGGA 59.992 52.381 0.00 0.00 0.00 4.20
2096 2522 1.500474 TGGAGCTATGGTGAAGAGGG 58.500 55.000 0.00 0.00 0.00 4.30
2114 2541 6.461110 AGGAGAATAATTTTGTGAGCCATG 57.539 37.500 0.00 0.00 0.00 3.66
2115 2542 7.486407 AAAGGAGAATAATTTTGTGAGCCAT 57.514 32.000 0.00 0.00 0.00 4.40
2141 2574 3.181434 ACTGCCTGGAGGTTATCACAAAA 60.181 43.478 0.00 0.00 37.57 2.44
2171 2604 9.762933 TGCTCTTAATGCTTCAAAAGTTTTTAT 57.237 25.926 0.00 0.00 0.00 1.40
2184 2617 1.339055 TGACGGCTGCTCTTAATGCTT 60.339 47.619 0.00 0.00 0.00 3.91
2195 2628 1.365633 CTCTATCCCTGACGGCTGC 59.634 63.158 0.00 0.00 0.00 5.25
2196 2629 1.112315 AGCTCTATCCCTGACGGCTG 61.112 60.000 0.00 0.00 0.00 4.85
2221 2654 3.549794 AGCTTTAGAGGCAATGGTGATC 58.450 45.455 0.00 0.00 0.00 2.92
2253 2686 5.758042 AGGAGGCCCTATATCTCATGATA 57.242 43.478 0.00 0.00 42.15 2.15
2254 2687 4.640753 AGGAGGCCCTATATCTCATGAT 57.359 45.455 0.00 0.00 42.15 2.45
2270 2703 2.866762 GCGCTAAGTGTGAAATAGGAGG 59.133 50.000 0.00 0.00 0.00 4.30
2289 2722 3.241995 GGCTGACTGAACTATTTAACGCG 60.242 47.826 3.53 3.53 0.00 6.01
2301 2734 1.279496 ATGCTAGTGGGCTGACTGAA 58.721 50.000 0.00 0.00 0.00 3.02
2302 2735 1.279496 AATGCTAGTGGGCTGACTGA 58.721 50.000 0.00 0.00 0.00 3.41
2303 2736 2.119801 AAATGCTAGTGGGCTGACTG 57.880 50.000 0.00 0.00 0.00 3.51
2304 2737 2.887151 AAAATGCTAGTGGGCTGACT 57.113 45.000 0.00 0.00 0.00 3.41
2369 2827 5.751028 CGTAAGCTGGAACCAATTTGAAAAA 59.249 36.000 0.00 0.00 0.00 1.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.