Multiple sequence alignment - TraesCS4D01G108500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G108500 chr4D 100.000 3323 0 0 1 3323 87944502 87947824 0.000000e+00 6137.0
1 TraesCS4D01G108500 chr4D 87.736 212 24 2 6 216 85885396 85885186 2.560000e-61 246.0
2 TraesCS4D01G108500 chr4B 95.487 2659 100 11 676 3323 124496470 124499119 0.000000e+00 4228.0
3 TraesCS4D01G108500 chr4B 88.732 213 24 0 1 213 120506682 120506470 9.140000e-66 261.0
4 TraesCS4D01G108500 chr4A 95.043 2562 95 16 659 3207 500629461 500632003 0.000000e+00 3999.0
5 TraesCS4D01G108500 chr4A 87.952 83 10 0 567 649 640920324 640920406 7.590000e-17 99.0
6 TraesCS4D01G108500 chr7D 80.249 481 72 9 6 467 477662769 477663245 1.140000e-89 340.0
7 TraesCS4D01G108500 chr7D 80.000 125 21 4 251 375 384988237 384988357 4.570000e-14 89.8
8 TraesCS4D01G108500 chr7D 97.297 37 1 0 614 650 557380435 557380471 2.770000e-06 63.9
9 TraesCS4D01G108500 chr7D 100.000 31 0 0 620 650 26557201 26557231 1.290000e-04 58.4
10 TraesCS4D01G108500 chr3D 81.221 426 62 4 4 412 48051170 48050746 8.890000e-86 327.0
11 TraesCS4D01G108500 chr3D 87.081 209 27 0 6 214 377195076 377194868 1.540000e-58 237.0
12 TraesCS4D01G108500 chr3D 80.357 168 26 6 256 419 504493917 504493753 1.620000e-23 121.0
13 TraesCS4D01G108500 chr3D 87.013 77 10 0 574 650 16586339 16586415 1.640000e-13 87.9
14 TraesCS4D01G108500 chr1D 81.030 427 61 7 6 416 372565789 372565367 4.140000e-84 322.0
15 TraesCS4D01G108500 chr1D 80.742 431 68 2 6 421 479489991 479490421 4.140000e-84 322.0
16 TraesCS4D01G108500 chr1D 78.631 482 79 9 6 467 221022535 221022058 6.970000e-77 298.0
17 TraesCS4D01G108500 chr2D 80.407 393 58 5 1 375 524046796 524046405 7.020000e-72 281.0
18 TraesCS4D01G108500 chr2D 79.121 182 38 0 279 460 373856032 373855851 3.480000e-25 126.0
19 TraesCS4D01G108500 chr2D 80.992 121 19 3 257 375 333987106 333987224 3.530000e-15 93.5
20 TraesCS4D01G108500 chr2B 77.931 435 78 11 6 438 153898766 153898348 4.250000e-64 255.0
21 TraesCS4D01G108500 chr2B 81.928 83 15 0 567 649 512631042 512630960 1.650000e-08 71.3
22 TraesCS4D01G108500 chr2A 80.135 297 35 12 131 407 92480324 92480032 2.020000e-47 200.0
23 TraesCS4D01G108500 chr5B 77.076 301 49 8 131 413 122142157 122142455 4.440000e-34 156.0
24 TraesCS4D01G108500 chr5A 81.875 160 19 6 265 418 613598414 613598259 3.480000e-25 126.0
25 TraesCS4D01G108500 chr5D 82.550 149 18 3 283 424 491448578 491448431 1.250000e-24 124.0
26 TraesCS4D01G108500 chrUn 85.586 111 14 2 311 421 422881748 422881640 7.530000e-22 115.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G108500 chr4D 87944502 87947824 3322 False 6137 6137 100.000 1 3323 1 chr4D.!!$F1 3322
1 TraesCS4D01G108500 chr4B 124496470 124499119 2649 False 4228 4228 95.487 676 3323 1 chr4B.!!$F1 2647
2 TraesCS4D01G108500 chr4A 500629461 500632003 2542 False 3999 3999 95.043 659 3207 1 chr4A.!!$F1 2548

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
826 831 0.034186 TGTCTGCCCATTGACCATCC 60.034 55.000 0.0 0.0 32.67 3.51 F
1503 1520 1.003355 CGTGCTTGTCCATGTCCCT 60.003 57.895 0.0 0.0 0.00 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1953 1970 0.417841 TTGCCTCCCTTACCTCCTCT 59.582 55.0 0.0 0.0 0.0 3.69 R
2444 2461 0.681733 AAGCCAGCAGTCTTTCGAGA 59.318 50.0 0.0 0.0 0.0 4.04 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.179332 CGACATTGCGTTTAATGCCG 58.821 50.000 6.70 0.00 40.80 5.69
20 21 1.201976 CGACATTGCGTTTAATGCCGA 60.202 47.619 6.70 0.00 43.57 5.54
21 22 2.173964 GACATTGCGTTTAATGCCGAC 58.826 47.619 6.70 0.00 40.80 4.79
22 23 1.135517 ACATTGCGTTTAATGCCGACC 60.136 47.619 6.70 0.00 40.80 4.79
23 24 0.454196 ATTGCGTTTAATGCCGACCC 59.546 50.000 6.70 0.00 0.00 4.46
24 25 1.913451 TTGCGTTTAATGCCGACCCG 61.913 55.000 6.70 0.00 0.00 5.28
25 26 2.401990 CGTTTAATGCCGACCCGC 59.598 61.111 0.00 0.00 0.00 6.13
26 27 2.104253 CGTTTAATGCCGACCCGCT 61.104 57.895 0.00 0.00 0.00 5.52
27 28 1.719709 GTTTAATGCCGACCCGCTC 59.280 57.895 0.00 0.00 0.00 5.03
28 29 1.022451 GTTTAATGCCGACCCGCTCA 61.022 55.000 0.00 0.00 0.00 4.26
29 30 0.107410 TTTAATGCCGACCCGCTCAT 60.107 50.000 0.00 0.00 0.00 2.90
30 31 0.813610 TTAATGCCGACCCGCTCATG 60.814 55.000 0.00 0.00 0.00 3.07
31 32 1.681486 TAATGCCGACCCGCTCATGA 61.681 55.000 0.00 0.00 0.00 3.07
32 33 2.535485 AATGCCGACCCGCTCATGAA 62.535 55.000 0.00 0.00 0.00 2.57
33 34 3.195698 GCCGACCCGCTCATGAAC 61.196 66.667 0.00 0.00 0.00 3.18
34 35 2.885644 CCGACCCGCTCATGAACG 60.886 66.667 11.53 11.53 0.00 3.95
40 41 3.072598 CGCTCATGAACGGACGTG 58.927 61.111 10.66 0.00 0.00 4.49
41 42 1.733041 CGCTCATGAACGGACGTGT 60.733 57.895 10.66 0.00 0.00 4.49
42 43 1.781555 GCTCATGAACGGACGTGTG 59.218 57.895 0.00 0.00 0.00 3.82
43 44 1.626654 GCTCATGAACGGACGTGTGG 61.627 60.000 0.00 0.00 0.00 4.17
44 45 1.626654 CTCATGAACGGACGTGTGGC 61.627 60.000 0.00 0.00 0.00 5.01
45 46 2.358247 ATGAACGGACGTGTGGCC 60.358 61.111 0.00 0.00 0.00 5.36
51 52 3.376078 GGACGTGTGGCCGGAGTA 61.376 66.667 5.05 0.00 0.00 2.59
52 53 2.181021 GACGTGTGGCCGGAGTAG 59.819 66.667 5.05 0.00 0.00 2.57
53 54 3.352338 GACGTGTGGCCGGAGTAGG 62.352 68.421 5.05 0.00 0.00 3.18
54 55 3.379445 CGTGTGGCCGGAGTAGGT 61.379 66.667 5.05 0.00 0.00 3.08
55 56 2.939261 CGTGTGGCCGGAGTAGGTT 61.939 63.158 5.05 0.00 0.00 3.50
56 57 1.373812 GTGTGGCCGGAGTAGGTTT 59.626 57.895 5.05 0.00 0.00 3.27
57 58 0.672711 GTGTGGCCGGAGTAGGTTTC 60.673 60.000 5.05 0.00 0.00 2.78
58 59 0.834687 TGTGGCCGGAGTAGGTTTCT 60.835 55.000 5.05 0.00 0.00 2.52
59 60 0.108281 GTGGCCGGAGTAGGTTTCTC 60.108 60.000 5.05 0.00 0.00 2.87
60 61 1.141234 GGCCGGAGTAGGTTTCTCG 59.859 63.158 5.05 0.00 33.26 4.04
61 62 1.141234 GCCGGAGTAGGTTTCTCGG 59.859 63.158 5.05 0.00 33.26 4.63
62 63 1.141234 CCGGAGTAGGTTTCTCGGC 59.859 63.158 0.00 0.00 33.11 5.54
63 64 1.321074 CCGGAGTAGGTTTCTCGGCT 61.321 60.000 0.00 0.00 33.11 5.52
64 65 0.531200 CGGAGTAGGTTTCTCGGCTT 59.469 55.000 0.00 0.00 33.26 4.35
65 66 1.469423 CGGAGTAGGTTTCTCGGCTTC 60.469 57.143 0.00 0.00 33.26 3.86
66 67 1.134759 GGAGTAGGTTTCTCGGCTTCC 60.135 57.143 0.00 0.00 33.26 3.46
67 68 1.549170 GAGTAGGTTTCTCGGCTTCCA 59.451 52.381 0.00 0.00 0.00 3.53
68 69 1.275573 AGTAGGTTTCTCGGCTTCCAC 59.724 52.381 0.00 0.00 0.00 4.02
69 70 1.001633 GTAGGTTTCTCGGCTTCCACA 59.998 52.381 0.00 0.00 0.00 4.17
70 71 0.250338 AGGTTTCTCGGCTTCCACAC 60.250 55.000 0.00 0.00 0.00 3.82
71 72 1.566018 GGTTTCTCGGCTTCCACACG 61.566 60.000 0.00 0.00 0.00 4.49
72 73 1.301401 TTTCTCGGCTTCCACACGG 60.301 57.895 0.00 0.00 0.00 4.94
73 74 2.725203 TTTCTCGGCTTCCACACGGG 62.725 60.000 0.00 0.00 38.37 5.28
74 75 4.003788 CTCGGCTTCCACACGGGT 62.004 66.667 0.00 0.00 38.11 5.28
75 76 3.530910 CTCGGCTTCCACACGGGTT 62.531 63.158 0.00 0.00 38.11 4.11
76 77 2.593436 CGGCTTCCACACGGGTTT 60.593 61.111 0.00 0.00 38.11 3.27
77 78 1.301874 CGGCTTCCACACGGGTTTA 60.302 57.895 0.00 0.00 38.11 2.01
78 79 0.885596 CGGCTTCCACACGGGTTTAA 60.886 55.000 0.00 0.00 38.11 1.52
79 80 1.541379 GGCTTCCACACGGGTTTAAT 58.459 50.000 0.00 0.00 38.11 1.40
80 81 1.201414 GGCTTCCACACGGGTTTAATG 59.799 52.381 0.00 0.00 38.11 1.90
81 82 2.156098 GCTTCCACACGGGTTTAATGA 58.844 47.619 0.00 0.00 38.11 2.57
82 83 2.554893 GCTTCCACACGGGTTTAATGAA 59.445 45.455 0.00 0.00 38.11 2.57
83 84 3.365969 GCTTCCACACGGGTTTAATGAAG 60.366 47.826 0.00 0.00 38.11 3.02
84 85 2.785562 TCCACACGGGTTTAATGAAGG 58.214 47.619 0.00 0.00 38.11 3.46
85 86 1.201414 CCACACGGGTTTAATGAAGGC 59.799 52.381 0.00 0.00 0.00 4.35
86 87 1.135803 CACACGGGTTTAATGAAGGCG 60.136 52.381 0.00 0.00 0.00 5.52
87 88 1.161843 CACGGGTTTAATGAAGGCGT 58.838 50.000 0.00 0.00 0.00 5.68
88 89 1.538075 CACGGGTTTAATGAAGGCGTT 59.462 47.619 0.00 0.00 0.00 4.84
89 90 2.030628 CACGGGTTTAATGAAGGCGTTT 60.031 45.455 0.00 0.00 0.00 3.60
90 91 2.030628 ACGGGTTTAATGAAGGCGTTTG 60.031 45.455 0.00 0.00 0.00 2.93
91 92 2.226912 CGGGTTTAATGAAGGCGTTTGA 59.773 45.455 0.00 0.00 0.00 2.69
92 93 3.304794 CGGGTTTAATGAAGGCGTTTGAA 60.305 43.478 0.00 0.00 0.00 2.69
93 94 4.617298 CGGGTTTAATGAAGGCGTTTGAAT 60.617 41.667 0.00 0.00 0.00 2.57
94 95 4.625311 GGGTTTAATGAAGGCGTTTGAATG 59.375 41.667 0.00 0.00 0.00 2.67
95 96 5.465935 GGTTTAATGAAGGCGTTTGAATGA 58.534 37.500 0.00 0.00 0.00 2.57
96 97 5.572896 GGTTTAATGAAGGCGTTTGAATGAG 59.427 40.000 0.00 0.00 0.00 2.90
97 98 3.855689 AATGAAGGCGTTTGAATGAGG 57.144 42.857 0.00 0.00 0.00 3.86
98 99 0.881118 TGAAGGCGTTTGAATGAGGC 59.119 50.000 0.00 0.00 0.00 4.70
99 100 0.179189 GAAGGCGTTTGAATGAGGCG 60.179 55.000 0.00 0.00 0.00 5.52
100 101 1.586154 AAGGCGTTTGAATGAGGCGG 61.586 55.000 0.00 0.00 0.00 6.13
101 102 2.202479 GCGTTTGAATGAGGCGGC 60.202 61.111 0.00 0.00 0.00 6.53
102 103 2.098298 CGTTTGAATGAGGCGGCG 59.902 61.111 0.51 0.51 0.00 6.46
103 104 2.387445 CGTTTGAATGAGGCGGCGA 61.387 57.895 12.98 0.00 0.00 5.54
104 105 1.425428 GTTTGAATGAGGCGGCGAG 59.575 57.895 12.98 0.00 0.00 5.03
105 106 1.745115 TTTGAATGAGGCGGCGAGG 60.745 57.895 12.98 0.00 0.00 4.63
116 117 3.112709 GGCGAGGCGTGTTCAGTC 61.113 66.667 0.00 0.00 0.00 3.51
117 118 3.470567 GCGAGGCGTGTTCAGTCG 61.471 66.667 0.00 0.00 0.00 4.18
118 119 2.805353 CGAGGCGTGTTCAGTCGG 60.805 66.667 0.00 0.00 0.00 4.79
119 120 2.432628 GAGGCGTGTTCAGTCGGG 60.433 66.667 0.00 0.00 0.00 5.14
120 121 4.681978 AGGCGTGTTCAGTCGGGC 62.682 66.667 0.00 0.00 0.00 6.13
164 165 3.508840 CGCCCCGCTTCAATGACC 61.509 66.667 0.00 0.00 0.00 4.02
165 166 3.508840 GCCCCGCTTCAATGACCG 61.509 66.667 0.00 0.00 0.00 4.79
166 167 2.267642 CCCCGCTTCAATGACCGA 59.732 61.111 4.37 0.00 0.00 4.69
167 168 1.815421 CCCCGCTTCAATGACCGAG 60.815 63.158 4.37 0.00 0.00 4.63
168 169 1.815421 CCCGCTTCAATGACCGAGG 60.815 63.158 4.37 0.27 0.00 4.63
169 170 2.464459 CCGCTTCAATGACCGAGGC 61.464 63.158 4.37 0.00 32.51 4.70
170 171 1.741401 CGCTTCAATGACCGAGGCA 60.741 57.895 0.00 0.00 35.35 4.75
171 172 1.699656 CGCTTCAATGACCGAGGCAG 61.700 60.000 0.00 0.00 35.35 4.85
172 173 0.674895 GCTTCAATGACCGAGGCAGT 60.675 55.000 0.00 0.00 35.68 4.40
173 174 1.813513 CTTCAATGACCGAGGCAGTT 58.186 50.000 0.00 0.00 0.00 3.16
174 175 2.935238 GCTTCAATGACCGAGGCAGTTA 60.935 50.000 0.00 0.00 35.68 2.24
175 176 2.672961 TCAATGACCGAGGCAGTTAG 57.327 50.000 0.00 0.00 0.00 2.34
176 177 2.176045 TCAATGACCGAGGCAGTTAGA 58.824 47.619 0.00 0.00 0.00 2.10
177 178 2.166459 TCAATGACCGAGGCAGTTAGAG 59.834 50.000 0.00 0.00 0.00 2.43
178 179 1.115467 ATGACCGAGGCAGTTAGAGG 58.885 55.000 0.00 0.00 0.00 3.69
179 180 0.251653 TGACCGAGGCAGTTAGAGGT 60.252 55.000 0.00 0.00 34.27 3.85
180 181 0.456628 GACCGAGGCAGTTAGAGGTC 59.543 60.000 0.00 0.00 40.85 3.85
181 182 1.313812 ACCGAGGCAGTTAGAGGTCG 61.314 60.000 0.00 0.00 0.00 4.79
182 183 1.226717 CGAGGCAGTTAGAGGTCGC 60.227 63.158 0.00 0.00 0.00 5.19
183 184 1.226717 GAGGCAGTTAGAGGTCGCG 60.227 63.158 0.00 0.00 0.00 5.87
184 185 1.935327 GAGGCAGTTAGAGGTCGCGT 61.935 60.000 5.77 0.00 0.00 6.01
185 186 1.516603 GGCAGTTAGAGGTCGCGTC 60.517 63.158 5.77 0.00 0.00 5.19
186 187 1.516603 GCAGTTAGAGGTCGCGTCC 60.517 63.158 14.89 14.89 0.00 4.79
187 188 1.226323 CAGTTAGAGGTCGCGTCCG 60.226 63.158 16.59 0.00 0.00 4.79
188 189 2.578981 GTTAGAGGTCGCGTCCGC 60.579 66.667 17.45 17.45 37.85 5.54
189 190 3.818787 TTAGAGGTCGCGTCCGCC 61.819 66.667 20.86 14.56 37.98 6.13
204 205 2.672996 GCCCTGAGCCGCTTTCAA 60.673 61.111 0.00 0.00 34.35 2.69
205 206 2.048603 GCCCTGAGCCGCTTTCAAT 61.049 57.895 0.00 0.00 34.35 2.57
206 207 1.805254 CCCTGAGCCGCTTTCAATG 59.195 57.895 0.00 0.00 0.00 2.82
207 208 0.962356 CCCTGAGCCGCTTTCAATGT 60.962 55.000 0.00 0.00 0.00 2.71
208 209 0.169672 CCTGAGCCGCTTTCAATGTG 59.830 55.000 0.00 0.00 0.00 3.21
209 210 0.169672 CTGAGCCGCTTTCAATGTGG 59.830 55.000 0.00 0.00 38.07 4.17
210 211 0.250684 TGAGCCGCTTTCAATGTGGA 60.251 50.000 7.06 0.00 37.26 4.02
211 212 0.449388 GAGCCGCTTTCAATGTGGAG 59.551 55.000 7.06 0.00 37.26 3.86
212 213 1.153958 GCCGCTTTCAATGTGGAGC 60.154 57.895 7.06 0.00 37.26 4.70
215 216 1.153958 GCTTTCAATGTGGAGCGGC 60.154 57.895 0.00 0.00 0.00 6.53
216 217 1.865788 GCTTTCAATGTGGAGCGGCA 61.866 55.000 1.45 0.00 0.00 5.69
217 218 0.813184 CTTTCAATGTGGAGCGGCAT 59.187 50.000 1.45 0.00 0.00 4.40
218 219 0.527113 TTTCAATGTGGAGCGGCATG 59.473 50.000 1.45 0.00 0.00 4.06
219 220 0.322366 TTCAATGTGGAGCGGCATGA 60.322 50.000 1.45 0.00 0.00 3.07
220 221 0.322366 TCAATGTGGAGCGGCATGAA 60.322 50.000 1.45 0.00 0.00 2.57
221 222 0.742505 CAATGTGGAGCGGCATGAAT 59.257 50.000 1.45 0.00 0.00 2.57
222 223 0.742505 AATGTGGAGCGGCATGAATG 59.257 50.000 1.45 0.00 0.00 2.67
247 248 3.121030 CTGGCGCCCGACAAGAAG 61.121 66.667 26.77 8.02 29.81 2.85
252 253 4.090057 GCCCGACAAGAAGCGCAC 62.090 66.667 11.47 2.78 0.00 5.34
253 254 2.664851 CCCGACAAGAAGCGCACA 60.665 61.111 11.47 0.00 0.00 4.57
254 255 2.551270 CCGACAAGAAGCGCACAC 59.449 61.111 11.47 0.00 0.00 3.82
255 256 2.168621 CGACAAGAAGCGCACACG 59.831 61.111 11.47 1.27 44.07 4.49
256 257 2.551270 GACAAGAAGCGCACACGG 59.449 61.111 11.47 0.00 40.57 4.94
257 258 2.954753 GACAAGAAGCGCACACGGG 61.955 63.158 11.47 0.00 40.57 5.28
258 259 2.664851 CAAGAAGCGCACACGGGA 60.665 61.111 11.47 0.00 40.57 5.14
259 260 2.357517 AAGAAGCGCACACGGGAG 60.358 61.111 11.47 0.00 40.57 4.30
260 261 3.883744 AAGAAGCGCACACGGGAGG 62.884 63.158 11.47 0.00 40.57 4.30
265 266 4.760047 CGCACACGGGAGGGGAAG 62.760 72.222 0.00 0.00 37.82 3.46
266 267 4.410400 GCACACGGGAGGGGAAGG 62.410 72.222 0.00 0.00 37.82 3.46
267 268 3.717294 CACACGGGAGGGGAAGGG 61.717 72.222 0.00 0.00 37.82 3.95
268 269 3.936566 ACACGGGAGGGGAAGGGA 61.937 66.667 0.00 0.00 37.82 4.20
269 270 2.366972 CACGGGAGGGGAAGGGAT 60.367 66.667 0.00 0.00 0.00 3.85
270 271 2.001269 CACGGGAGGGGAAGGGATT 61.001 63.158 0.00 0.00 0.00 3.01
271 272 1.230182 ACGGGAGGGGAAGGGATTT 60.230 57.895 0.00 0.00 0.00 2.17
272 273 0.849540 ACGGGAGGGGAAGGGATTTT 60.850 55.000 0.00 0.00 0.00 1.82
273 274 0.335019 CGGGAGGGGAAGGGATTTTT 59.665 55.000 0.00 0.00 0.00 1.94
274 275 1.866015 GGGAGGGGAAGGGATTTTTG 58.134 55.000 0.00 0.00 0.00 2.44
275 276 1.361197 GGGAGGGGAAGGGATTTTTGA 59.639 52.381 0.00 0.00 0.00 2.69
276 277 2.023015 GGGAGGGGAAGGGATTTTTGAT 60.023 50.000 0.00 0.00 0.00 2.57
277 278 3.206639 GGGAGGGGAAGGGATTTTTGATA 59.793 47.826 0.00 0.00 0.00 2.15
278 279 4.474394 GGAGGGGAAGGGATTTTTGATAG 58.526 47.826 0.00 0.00 0.00 2.08
279 280 4.474394 GAGGGGAAGGGATTTTTGATAGG 58.526 47.826 0.00 0.00 0.00 2.57
280 281 2.965831 GGGGAAGGGATTTTTGATAGGC 59.034 50.000 0.00 0.00 0.00 3.93
281 282 2.965831 GGGAAGGGATTTTTGATAGGCC 59.034 50.000 0.00 0.00 0.00 5.19
282 283 3.629796 GGGAAGGGATTTTTGATAGGCCA 60.630 47.826 5.01 0.00 0.00 5.36
283 284 3.638627 GGAAGGGATTTTTGATAGGCCAG 59.361 47.826 5.01 0.00 0.00 4.85
284 285 3.319031 AGGGATTTTTGATAGGCCAGG 57.681 47.619 5.01 0.00 0.00 4.45
285 286 2.091111 AGGGATTTTTGATAGGCCAGGG 60.091 50.000 5.01 0.00 0.00 4.45
286 287 1.688735 GGATTTTTGATAGGCCAGGGC 59.311 52.381 5.01 4.33 41.06 5.19
287 288 1.338020 GATTTTTGATAGGCCAGGGCG 59.662 52.381 5.01 0.00 43.06 6.13
288 289 0.682855 TTTTTGATAGGCCAGGGCGG 60.683 55.000 5.01 0.00 43.06 6.13
289 290 1.858739 TTTTGATAGGCCAGGGCGGT 61.859 55.000 5.01 0.00 43.06 5.68
290 291 2.265467 TTTGATAGGCCAGGGCGGTC 62.265 60.000 5.01 10.32 43.06 4.79
291 292 3.161450 GATAGGCCAGGGCGGTCA 61.161 66.667 5.01 0.00 44.49 4.02
292 293 3.164269 ATAGGCCAGGGCGGTCAG 61.164 66.667 5.01 0.00 44.49 3.51
293 294 3.696518 ATAGGCCAGGGCGGTCAGA 62.697 63.158 5.01 0.00 44.49 3.27
294 295 3.916438 TAGGCCAGGGCGGTCAGAA 62.916 63.158 5.01 0.00 44.49 3.02
295 296 4.785453 GGCCAGGGCGGTCAGAAG 62.785 72.222 0.00 0.00 40.18 2.85
303 304 3.197790 CGGTCAGAAGCGGGCATG 61.198 66.667 0.00 0.00 42.53 4.06
304 305 2.825836 GGTCAGAAGCGGGCATGG 60.826 66.667 0.00 0.00 0.00 3.66
305 306 2.825836 GTCAGAAGCGGGCATGGG 60.826 66.667 0.00 0.00 0.00 4.00
306 307 3.008517 TCAGAAGCGGGCATGGGA 61.009 61.111 0.00 0.00 0.00 4.37
307 308 2.194056 CAGAAGCGGGCATGGGAT 59.806 61.111 0.00 0.00 0.00 3.85
308 309 1.895707 CAGAAGCGGGCATGGGATC 60.896 63.158 0.00 0.00 0.00 3.36
309 310 2.974698 GAAGCGGGCATGGGATCG 60.975 66.667 0.00 0.00 0.00 3.69
310 311 4.569180 AAGCGGGCATGGGATCGG 62.569 66.667 0.00 0.00 0.00 4.18
313 314 4.626081 CGGGCATGGGATCGGTCC 62.626 72.222 6.02 6.02 44.29 4.46
314 315 4.626081 GGGCATGGGATCGGTCCG 62.626 72.222 9.04 4.39 46.09 4.79
315 316 4.626081 GGCATGGGATCGGTCCGG 62.626 72.222 12.29 0.00 46.09 5.14
316 317 3.546543 GCATGGGATCGGTCCGGA 61.547 66.667 12.29 0.00 46.09 5.14
317 318 2.421739 CATGGGATCGGTCCGGAC 59.578 66.667 27.04 27.04 46.09 4.79
318 319 2.134287 CATGGGATCGGTCCGGACT 61.134 63.158 32.52 14.86 46.09 3.85
319 320 1.833049 ATGGGATCGGTCCGGACTC 60.833 63.158 32.52 22.18 46.09 3.36
320 321 3.225061 GGGATCGGTCCGGACTCC 61.225 72.222 32.52 28.90 46.09 3.85
321 322 3.225061 GGATCGGTCCGGACTCCC 61.225 72.222 32.52 22.69 34.13 4.30
331 332 4.542075 GGACTCCCGCAAATCTCC 57.458 61.111 0.00 0.00 0.00 3.71
332 333 1.153147 GGACTCCCGCAAATCTCCC 60.153 63.158 0.00 0.00 0.00 4.30
333 334 1.153147 GACTCCCGCAAATCTCCCC 60.153 63.158 0.00 0.00 0.00 4.81
334 335 1.910580 GACTCCCGCAAATCTCCCCA 61.911 60.000 0.00 0.00 0.00 4.96
335 336 1.452108 CTCCCGCAAATCTCCCCAC 60.452 63.158 0.00 0.00 0.00 4.61
336 337 2.824041 CCCGCAAATCTCCCCACG 60.824 66.667 0.00 0.00 0.00 4.94
337 338 2.046314 CCGCAAATCTCCCCACGT 60.046 61.111 0.00 0.00 0.00 4.49
338 339 1.674322 CCGCAAATCTCCCCACGTT 60.674 57.895 0.00 0.00 0.00 3.99
339 340 1.241315 CCGCAAATCTCCCCACGTTT 61.241 55.000 0.00 0.00 0.00 3.60
340 341 0.109781 CGCAAATCTCCCCACGTTTG 60.110 55.000 0.00 0.00 35.30 2.93
341 342 0.958822 GCAAATCTCCCCACGTTTGT 59.041 50.000 0.00 0.00 34.82 2.83
342 343 1.068541 GCAAATCTCCCCACGTTTGTC 60.069 52.381 0.00 0.00 34.82 3.18
343 344 2.504367 CAAATCTCCCCACGTTTGTCT 58.496 47.619 0.00 0.00 0.00 3.41
344 345 2.474410 AATCTCCCCACGTTTGTCTC 57.526 50.000 0.00 0.00 0.00 3.36
345 346 0.613777 ATCTCCCCACGTTTGTCTCC 59.386 55.000 0.00 0.00 0.00 3.71
346 347 0.471211 TCTCCCCACGTTTGTCTCCT 60.471 55.000 0.00 0.00 0.00 3.69
347 348 0.320771 CTCCCCACGTTTGTCTCCTG 60.321 60.000 0.00 0.00 0.00 3.86
348 349 1.052124 TCCCCACGTTTGTCTCCTGT 61.052 55.000 0.00 0.00 0.00 4.00
349 350 0.179029 CCCCACGTTTGTCTCCTGTT 60.179 55.000 0.00 0.00 0.00 3.16
350 351 1.675552 CCCACGTTTGTCTCCTGTTT 58.324 50.000 0.00 0.00 0.00 2.83
351 352 2.485835 CCCCACGTTTGTCTCCTGTTTA 60.486 50.000 0.00 0.00 0.00 2.01
352 353 2.546789 CCCACGTTTGTCTCCTGTTTAC 59.453 50.000 0.00 0.00 0.00 2.01
353 354 2.220133 CCACGTTTGTCTCCTGTTTACG 59.780 50.000 0.00 0.00 0.00 3.18
354 355 2.220133 CACGTTTGTCTCCTGTTTACGG 59.780 50.000 0.00 0.00 32.33 4.02
355 356 1.796459 CGTTTGTCTCCTGTTTACGGG 59.204 52.381 1.07 1.07 43.86 5.28
363 364 3.842007 TCCTGTTTACGGGAGAAAACA 57.158 42.857 6.34 0.00 46.04 2.83
364 365 3.469739 TCCTGTTTACGGGAGAAAACAC 58.530 45.455 6.34 0.00 46.04 3.32
365 366 2.222445 CCTGTTTACGGGAGAAAACACG 59.778 50.000 1.26 0.00 45.36 4.49
369 370 3.545911 CGGGAGAAAACACGTCCG 58.454 61.111 0.00 0.00 31.63 4.79
370 371 1.007038 CGGGAGAAAACACGTCCGA 60.007 57.895 2.16 0.00 39.83 4.55
371 372 0.598158 CGGGAGAAAACACGTCCGAA 60.598 55.000 2.16 0.00 39.83 4.30
372 373 0.863799 GGGAGAAAACACGTCCGAAC 59.136 55.000 0.00 0.00 0.00 3.95
373 374 0.863799 GGAGAAAACACGTCCGAACC 59.136 55.000 0.00 0.00 0.00 3.62
374 375 0.505655 GAGAAAACACGTCCGAACCG 59.494 55.000 0.00 0.00 0.00 4.44
375 376 1.083209 GAAAACACGTCCGAACCGC 60.083 57.895 0.00 0.00 0.00 5.68
376 377 2.737665 GAAAACACGTCCGAACCGCG 62.738 60.000 0.00 0.00 40.47 6.46
389 390 3.192230 CCGCGCTGCAAACCGATA 61.192 61.111 5.56 0.00 0.00 2.92
390 391 2.021380 CGCGCTGCAAACCGATAC 59.979 61.111 5.56 0.00 0.00 2.24
391 392 2.735677 CGCGCTGCAAACCGATACA 61.736 57.895 5.56 0.00 0.00 2.29
392 393 1.499949 GCGCTGCAAACCGATACAA 59.500 52.632 0.00 0.00 0.00 2.41
393 394 0.521242 GCGCTGCAAACCGATACAAG 60.521 55.000 0.00 0.00 0.00 3.16
394 395 1.075542 CGCTGCAAACCGATACAAGA 58.924 50.000 0.00 0.00 0.00 3.02
395 396 1.201921 CGCTGCAAACCGATACAAGAC 60.202 52.381 0.00 0.00 0.00 3.01
396 397 2.076863 GCTGCAAACCGATACAAGACT 58.923 47.619 0.00 0.00 0.00 3.24
397 398 2.159653 GCTGCAAACCGATACAAGACTG 60.160 50.000 0.00 0.00 0.00 3.51
398 399 3.067106 CTGCAAACCGATACAAGACTGT 58.933 45.455 0.00 0.00 39.75 3.55
399 400 2.805671 TGCAAACCGATACAAGACTGTG 59.194 45.455 0.00 0.00 36.96 3.66
400 401 2.806244 GCAAACCGATACAAGACTGTGT 59.194 45.455 0.00 0.00 36.96 3.72
401 402 3.250040 GCAAACCGATACAAGACTGTGTT 59.750 43.478 0.00 0.00 36.96 3.32
402 403 4.772434 CAAACCGATACAAGACTGTGTTG 58.228 43.478 15.25 15.25 36.96 3.33
404 405 2.631062 ACCGATACAAGACTGTGTTGGA 59.369 45.455 20.00 13.39 46.48 3.53
405 406 3.260884 ACCGATACAAGACTGTGTTGGAT 59.739 43.478 14.60 14.60 46.48 3.41
406 407 3.618594 CCGATACAAGACTGTGTTGGATG 59.381 47.826 18.97 11.29 46.48 3.51
407 408 4.494484 CGATACAAGACTGTGTTGGATGA 58.506 43.478 18.97 3.70 36.96 2.92
408 409 4.327357 CGATACAAGACTGTGTTGGATGAC 59.673 45.833 18.97 5.93 36.96 3.06
409 410 3.845781 ACAAGACTGTGTTGGATGACT 57.154 42.857 20.00 0.00 33.30 3.41
410 411 4.156455 ACAAGACTGTGTTGGATGACTT 57.844 40.909 20.00 0.00 33.30 3.01
411 412 4.130118 ACAAGACTGTGTTGGATGACTTC 58.870 43.478 20.00 0.00 33.30 3.01
412 413 3.409026 AGACTGTGTTGGATGACTTCC 57.591 47.619 0.30 0.30 45.69 3.46
413 414 7.382667 ACAAGACTGTGTTGGATGACTTCCA 62.383 44.000 20.00 5.98 43.15 3.53
414 415 8.605350 ACAAGACTGTGTTGGATGACTTCCAT 62.605 42.308 20.00 0.00 43.79 3.41
420 421 3.386543 GGATGACTTCCATGGTCCG 57.613 57.895 12.58 3.91 44.74 4.79
421 422 0.830648 GGATGACTTCCATGGTCCGA 59.169 55.000 12.58 0.00 44.74 4.55
422 423 1.209504 GGATGACTTCCATGGTCCGAA 59.790 52.381 12.58 0.00 44.74 4.30
423 424 2.158755 GGATGACTTCCATGGTCCGAAT 60.159 50.000 12.58 1.62 44.74 3.34
424 425 3.071023 GGATGACTTCCATGGTCCGAATA 59.929 47.826 12.58 0.00 44.74 1.75
425 426 3.819564 TGACTTCCATGGTCCGAATAG 57.180 47.619 12.58 2.08 33.22 1.73
426 427 2.158957 TGACTTCCATGGTCCGAATAGC 60.159 50.000 12.58 0.00 33.22 2.97
427 428 1.837439 ACTTCCATGGTCCGAATAGCA 59.163 47.619 12.58 0.00 0.00 3.49
428 429 2.213499 CTTCCATGGTCCGAATAGCAC 58.787 52.381 12.58 0.00 0.00 4.40
429 430 0.104120 TCCATGGTCCGAATAGCACG 59.896 55.000 12.58 0.00 0.00 5.34
435 436 2.279252 CCGAATAGCACGGTCCGG 60.279 66.667 17.28 5.79 44.57 5.14
436 437 2.777972 CCGAATAGCACGGTCCGGA 61.778 63.158 17.28 0.00 44.57 5.14
437 438 1.588139 CGAATAGCACGGTCCGGAC 60.588 63.158 27.04 27.04 0.00 4.79
438 439 1.514087 GAATAGCACGGTCCGGACA 59.486 57.895 34.40 14.72 0.00 4.02
439 440 0.108520 GAATAGCACGGTCCGGACAA 60.109 55.000 34.40 13.31 0.00 3.18
440 441 0.539986 AATAGCACGGTCCGGACAAT 59.460 50.000 34.40 19.75 0.00 2.71
441 442 0.539986 ATAGCACGGTCCGGACAATT 59.460 50.000 34.40 15.95 0.00 2.32
442 443 0.390603 TAGCACGGTCCGGACAATTG 60.391 55.000 34.40 26.19 0.00 2.32
443 444 2.867472 CACGGTCCGGACAATTGC 59.133 61.111 34.40 16.59 0.00 3.56
444 445 1.963855 CACGGTCCGGACAATTGCA 60.964 57.895 34.40 0.00 0.00 4.08
445 446 1.671054 ACGGTCCGGACAATTGCAG 60.671 57.895 34.40 17.75 0.00 4.41
446 447 2.398554 CGGTCCGGACAATTGCAGG 61.399 63.158 34.40 8.83 0.00 4.85
447 448 1.002624 GGTCCGGACAATTGCAGGA 60.003 57.895 34.40 14.35 0.00 3.86
448 449 1.026718 GGTCCGGACAATTGCAGGAG 61.027 60.000 34.40 2.22 0.00 3.69
449 450 0.321653 GTCCGGACAATTGCAGGAGT 60.322 55.000 29.75 0.00 0.00 3.85
450 451 0.400213 TCCGGACAATTGCAGGAGTT 59.600 50.000 0.00 0.00 0.00 3.01
451 452 0.804989 CCGGACAATTGCAGGAGTTC 59.195 55.000 5.05 0.00 0.00 3.01
452 453 1.611673 CCGGACAATTGCAGGAGTTCT 60.612 52.381 5.05 0.00 0.00 3.01
453 454 1.466167 CGGACAATTGCAGGAGTTCTG 59.534 52.381 5.05 0.00 46.03 3.02
454 455 2.783135 GGACAATTGCAGGAGTTCTGA 58.217 47.619 1.33 0.00 46.18 3.27
455 456 2.746362 GGACAATTGCAGGAGTTCTGAG 59.254 50.000 1.33 0.00 46.18 3.35
456 457 2.746362 GACAATTGCAGGAGTTCTGAGG 59.254 50.000 1.33 0.00 46.18 3.86
457 458 2.089980 CAATTGCAGGAGTTCTGAGGG 58.910 52.381 1.33 0.00 46.18 4.30
458 459 1.366319 ATTGCAGGAGTTCTGAGGGT 58.634 50.000 1.33 0.00 46.18 4.34
459 460 0.687354 TTGCAGGAGTTCTGAGGGTC 59.313 55.000 1.33 0.00 46.18 4.46
460 461 1.216710 GCAGGAGTTCTGAGGGTCG 59.783 63.158 1.33 0.00 46.18 4.79
461 462 1.893786 CAGGAGTTCTGAGGGTCGG 59.106 63.158 0.00 0.00 46.18 4.79
462 463 1.985116 AGGAGTTCTGAGGGTCGGC 60.985 63.158 0.00 0.00 0.00 5.54
463 464 2.182030 GAGTTCTGAGGGTCGGCG 59.818 66.667 0.00 0.00 0.00 6.46
464 465 2.600769 AGTTCTGAGGGTCGGCGT 60.601 61.111 6.85 0.00 0.00 5.68
465 466 2.156051 GAGTTCTGAGGGTCGGCGTT 62.156 60.000 6.85 0.00 0.00 4.84
466 467 2.027625 GTTCTGAGGGTCGGCGTTG 61.028 63.158 6.85 0.00 0.00 4.10
467 468 3.876589 TTCTGAGGGTCGGCGTTGC 62.877 63.158 6.85 0.00 0.00 4.17
479 480 2.734276 GGCGTTGCCCTTATGAAAAA 57.266 45.000 0.00 0.00 44.06 1.94
494 495 2.341452 AAAAAGAAGTGGCCCTCGC 58.659 52.632 0.00 0.00 0.00 5.03
495 496 0.178990 AAAAAGAAGTGGCCCTCGCT 60.179 50.000 0.00 0.00 37.93 4.93
496 497 0.690762 AAAAGAAGTGGCCCTCGCTA 59.309 50.000 0.00 0.00 34.68 4.26
497 498 0.912486 AAAGAAGTGGCCCTCGCTAT 59.088 50.000 0.00 0.00 34.68 2.97
498 499 0.466124 AAGAAGTGGCCCTCGCTATC 59.534 55.000 0.00 0.00 34.68 2.08
499 500 1.300233 GAAGTGGCCCTCGCTATCG 60.300 63.158 0.00 0.00 34.68 2.92
500 501 2.017559 GAAGTGGCCCTCGCTATCGT 62.018 60.000 0.00 0.00 34.68 3.73
501 502 2.279517 GTGGCCCTCGCTATCGTG 60.280 66.667 0.00 0.00 36.96 4.35
502 503 4.221422 TGGCCCTCGCTATCGTGC 62.221 66.667 0.00 0.00 36.96 5.34
503 504 4.971125 GGCCCTCGCTATCGTGCC 62.971 72.222 0.00 2.34 38.17 5.01
504 505 4.971125 GCCCTCGCTATCGTGCCC 62.971 72.222 0.00 0.00 36.96 5.36
505 506 3.227276 CCCTCGCTATCGTGCCCT 61.227 66.667 0.00 0.00 36.96 5.19
506 507 2.336809 CCTCGCTATCGTGCCCTC 59.663 66.667 0.00 0.00 36.96 4.30
507 508 2.336809 CTCGCTATCGTGCCCTCC 59.663 66.667 0.00 0.00 36.96 4.30
508 509 2.441348 TCGCTATCGTGCCCTCCA 60.441 61.111 0.00 0.00 36.96 3.86
509 510 2.279517 CGCTATCGTGCCCTCCAC 60.280 66.667 0.00 0.00 41.15 4.02
510 511 2.109181 GCTATCGTGCCCTCCACC 59.891 66.667 0.00 0.00 41.53 4.61
511 512 2.435693 GCTATCGTGCCCTCCACCT 61.436 63.158 0.00 0.00 41.53 4.00
512 513 1.742768 CTATCGTGCCCTCCACCTC 59.257 63.158 0.00 0.00 41.53 3.85
513 514 2.076622 CTATCGTGCCCTCCACCTCG 62.077 65.000 0.00 0.00 41.53 4.63
519 520 3.402681 CCCTCCACCTCGGCACAT 61.403 66.667 0.00 0.00 33.14 3.21
520 521 2.124983 CCTCCACCTCGGCACATG 60.125 66.667 0.00 0.00 33.14 3.21
521 522 2.821366 CTCCACCTCGGCACATGC 60.821 66.667 0.00 0.00 41.14 4.06
522 523 3.610619 CTCCACCTCGGCACATGCA 62.611 63.158 6.15 0.00 44.36 3.96
523 524 2.438975 CCACCTCGGCACATGCAT 60.439 61.111 6.15 0.00 44.36 3.96
524 525 1.153188 CCACCTCGGCACATGCATA 60.153 57.895 0.00 0.00 44.36 3.14
525 526 0.535780 CCACCTCGGCACATGCATAT 60.536 55.000 0.00 0.00 44.36 1.78
526 527 1.311859 CACCTCGGCACATGCATATT 58.688 50.000 0.00 0.00 44.36 1.28
527 528 1.265095 CACCTCGGCACATGCATATTC 59.735 52.381 0.00 0.00 44.36 1.75
528 529 1.141657 ACCTCGGCACATGCATATTCT 59.858 47.619 0.00 0.00 44.36 2.40
529 530 2.224606 CCTCGGCACATGCATATTCTT 58.775 47.619 0.00 0.00 44.36 2.52
530 531 2.620115 CCTCGGCACATGCATATTCTTT 59.380 45.455 0.00 0.00 44.36 2.52
531 532 3.067180 CCTCGGCACATGCATATTCTTTT 59.933 43.478 0.00 0.00 44.36 2.27
532 533 4.440525 CCTCGGCACATGCATATTCTTTTT 60.441 41.667 0.00 0.00 44.36 1.94
559 560 2.493035 TGGCACATGCATATTCGTAGG 58.507 47.619 0.00 0.00 44.36 3.18
560 561 2.158827 TGGCACATGCATATTCGTAGGT 60.159 45.455 0.00 0.00 44.36 3.08
561 562 2.878406 GGCACATGCATATTCGTAGGTT 59.122 45.455 0.00 0.00 44.36 3.50
562 563 4.062293 GGCACATGCATATTCGTAGGTTA 58.938 43.478 0.00 0.00 44.36 2.85
563 564 4.084013 GGCACATGCATATTCGTAGGTTAC 60.084 45.833 0.00 0.00 44.36 2.50
564 565 4.509970 GCACATGCATATTCGTAGGTTACA 59.490 41.667 0.00 0.00 41.59 2.41
565 566 5.333339 GCACATGCATATTCGTAGGTTACAG 60.333 44.000 0.00 0.00 41.59 2.74
566 567 5.753438 CACATGCATATTCGTAGGTTACAGT 59.247 40.000 0.00 0.00 0.00 3.55
567 568 5.983720 ACATGCATATTCGTAGGTTACAGTC 59.016 40.000 0.00 0.00 0.00 3.51
568 569 5.847111 TGCATATTCGTAGGTTACAGTCT 57.153 39.130 0.00 0.00 0.00 3.24
569 570 5.828747 TGCATATTCGTAGGTTACAGTCTC 58.171 41.667 0.00 0.00 0.00 3.36
570 571 4.910456 GCATATTCGTAGGTTACAGTCTCG 59.090 45.833 0.00 0.00 0.00 4.04
571 572 5.277683 GCATATTCGTAGGTTACAGTCTCGA 60.278 44.000 0.00 0.00 0.00 4.04
572 573 6.568081 GCATATTCGTAGGTTACAGTCTCGAT 60.568 42.308 0.00 0.00 0.00 3.59
573 574 5.831702 ATTCGTAGGTTACAGTCTCGATT 57.168 39.130 0.00 0.00 0.00 3.34
574 575 5.633830 TTCGTAGGTTACAGTCTCGATTT 57.366 39.130 0.00 0.00 0.00 2.17
575 576 6.741992 TTCGTAGGTTACAGTCTCGATTTA 57.258 37.500 0.00 0.00 0.00 1.40
576 577 6.932356 TCGTAGGTTACAGTCTCGATTTAT 57.068 37.500 0.00 0.00 0.00 1.40
577 578 6.722301 TCGTAGGTTACAGTCTCGATTTATG 58.278 40.000 0.00 0.00 0.00 1.90
578 579 5.398711 CGTAGGTTACAGTCTCGATTTATGC 59.601 44.000 0.00 0.00 0.00 3.14
579 580 4.360563 AGGTTACAGTCTCGATTTATGCG 58.639 43.478 0.00 0.00 0.00 4.73
580 581 4.110482 GGTTACAGTCTCGATTTATGCGT 58.890 43.478 0.00 0.00 0.00 5.24
581 582 4.026804 GGTTACAGTCTCGATTTATGCGTG 60.027 45.833 0.00 0.00 0.00 5.34
582 583 3.232213 ACAGTCTCGATTTATGCGTGT 57.768 42.857 0.00 0.00 0.00 4.49
583 584 3.179830 ACAGTCTCGATTTATGCGTGTC 58.820 45.455 0.00 0.00 0.00 3.67
584 585 3.179048 CAGTCTCGATTTATGCGTGTCA 58.821 45.455 0.00 0.00 0.00 3.58
585 586 3.798878 CAGTCTCGATTTATGCGTGTCAT 59.201 43.478 0.00 0.00 39.17 3.06
586 587 4.268644 CAGTCTCGATTTATGCGTGTCATT 59.731 41.667 0.00 0.00 36.63 2.57
587 588 4.504461 AGTCTCGATTTATGCGTGTCATTC 59.496 41.667 0.00 0.00 36.63 2.67
588 589 4.504461 GTCTCGATTTATGCGTGTCATTCT 59.496 41.667 0.00 0.00 36.63 2.40
589 590 5.005779 GTCTCGATTTATGCGTGTCATTCTT 59.994 40.000 0.00 0.00 36.63 2.52
590 591 6.198403 GTCTCGATTTATGCGTGTCATTCTTA 59.802 38.462 0.00 0.00 36.63 2.10
591 592 6.198403 TCTCGATTTATGCGTGTCATTCTTAC 59.802 38.462 0.00 0.00 36.63 2.34
592 593 5.808030 TCGATTTATGCGTGTCATTCTTACA 59.192 36.000 0.00 0.00 36.63 2.41
593 594 5.896432 CGATTTATGCGTGTCATTCTTACAC 59.104 40.000 0.00 0.00 43.04 2.90
594 595 6.454981 CGATTTATGCGTGTCATTCTTACACA 60.455 38.462 7.10 0.00 46.05 3.72
595 596 5.778161 TTATGCGTGTCATTCTTACACAG 57.222 39.130 7.10 1.72 46.05 3.66
596 597 2.412870 TGCGTGTCATTCTTACACAGG 58.587 47.619 7.10 0.00 46.05 4.00
597 598 1.732259 GCGTGTCATTCTTACACAGGG 59.268 52.381 7.10 0.00 46.05 4.45
598 599 2.611971 GCGTGTCATTCTTACACAGGGA 60.612 50.000 7.10 0.00 46.05 4.20
599 600 2.993899 CGTGTCATTCTTACACAGGGAC 59.006 50.000 7.10 0.00 46.05 4.46
600 601 3.335579 GTGTCATTCTTACACAGGGACC 58.664 50.000 0.00 0.00 45.26 4.46
601 602 2.028476 TGTCATTCTTACACAGGGACCG 60.028 50.000 0.00 0.00 0.00 4.79
602 603 2.028385 GTCATTCTTACACAGGGACCGT 60.028 50.000 0.00 0.00 0.00 4.83
603 604 2.028476 TCATTCTTACACAGGGACCGTG 60.028 50.000 12.66 12.66 40.32 4.94
604 605 0.034337 TTCTTACACAGGGACCGTGC 59.966 55.000 14.12 0.00 37.93 5.34
605 606 0.830444 TCTTACACAGGGACCGTGCT 60.830 55.000 14.12 2.41 37.93 4.40
606 607 0.892755 CTTACACAGGGACCGTGCTA 59.107 55.000 14.12 1.45 37.93 3.49
607 608 1.274167 CTTACACAGGGACCGTGCTAA 59.726 52.381 14.12 8.91 37.93 3.09
608 609 1.563924 TACACAGGGACCGTGCTAAT 58.436 50.000 14.12 0.31 37.93 1.73
609 610 0.249398 ACACAGGGACCGTGCTAATC 59.751 55.000 14.12 0.00 37.93 1.75
610 611 0.537188 CACAGGGACCGTGCTAATCT 59.463 55.000 14.12 0.00 0.00 2.40
611 612 1.066143 CACAGGGACCGTGCTAATCTT 60.066 52.381 14.12 0.00 0.00 2.40
612 613 1.207329 ACAGGGACCGTGCTAATCTTC 59.793 52.381 14.12 0.00 0.00 2.87
613 614 1.482593 CAGGGACCGTGCTAATCTTCT 59.517 52.381 0.32 0.00 0.00 2.85
614 615 1.757699 AGGGACCGTGCTAATCTTCTC 59.242 52.381 0.00 0.00 0.00 2.87
615 616 1.757699 GGGACCGTGCTAATCTTCTCT 59.242 52.381 0.00 0.00 0.00 3.10
616 617 2.957006 GGGACCGTGCTAATCTTCTCTA 59.043 50.000 0.00 0.00 0.00 2.43
617 618 3.574826 GGGACCGTGCTAATCTTCTCTAT 59.425 47.826 0.00 0.00 0.00 1.98
618 619 4.765856 GGGACCGTGCTAATCTTCTCTATA 59.234 45.833 0.00 0.00 0.00 1.31
619 620 5.419471 GGGACCGTGCTAATCTTCTCTATAT 59.581 44.000 0.00 0.00 0.00 0.86
620 621 6.404954 GGGACCGTGCTAATCTTCTCTATATC 60.405 46.154 0.00 0.00 0.00 1.63
621 622 6.184580 ACCGTGCTAATCTTCTCTATATCG 57.815 41.667 0.00 0.00 0.00 2.92
622 623 5.706369 ACCGTGCTAATCTTCTCTATATCGT 59.294 40.000 0.00 0.00 0.00 3.73
623 624 6.207025 ACCGTGCTAATCTTCTCTATATCGTT 59.793 38.462 0.00 0.00 0.00 3.85
624 625 7.085116 CCGTGCTAATCTTCTCTATATCGTTT 58.915 38.462 0.00 0.00 0.00 3.60
625 626 7.271653 CCGTGCTAATCTTCTCTATATCGTTTC 59.728 40.741 0.00 0.00 0.00 2.78
626 627 7.803659 CGTGCTAATCTTCTCTATATCGTTTCA 59.196 37.037 0.00 0.00 0.00 2.69
627 628 9.464714 GTGCTAATCTTCTCTATATCGTTTCAA 57.535 33.333 0.00 0.00 0.00 2.69
642 643 6.114221 TCGTTTCAATTTTATCGGATGTCC 57.886 37.500 0.00 0.00 0.00 4.02
643 644 5.065474 TCGTTTCAATTTTATCGGATGTCCC 59.935 40.000 0.00 0.00 0.00 4.46
644 645 5.588240 GTTTCAATTTTATCGGATGTCCCC 58.412 41.667 0.00 0.00 0.00 4.81
667 668 5.231568 CCGAAGGCTATAGTGAAACGTTAAG 59.768 44.000 0.00 0.00 46.14 1.85
685 687 8.134905 ACGTTAAGTTTAGGTCAGTACTTTTG 57.865 34.615 0.00 0.00 33.28 2.44
826 831 0.034186 TGTCTGCCCATTGACCATCC 60.034 55.000 0.00 0.00 32.67 3.51
828 833 1.077501 CTGCCCATTGACCATCCGT 60.078 57.895 0.00 0.00 0.00 4.69
1161 1178 3.610669 CTCGCCTCCATCCTCCCG 61.611 72.222 0.00 0.00 0.00 5.14
1455 1472 2.188161 CCTCCTCGCCGTCTACTCC 61.188 68.421 0.00 0.00 0.00 3.85
1503 1520 1.003355 CGTGCTTGTCCATGTCCCT 60.003 57.895 0.00 0.00 0.00 4.20
1806 1823 1.536766 TGCCGTTTTGAGCTTGATGAG 59.463 47.619 0.00 0.00 0.00 2.90
1950 1967 1.202952 AGTGGCCGGAATTGTGGTAAA 60.203 47.619 5.05 0.00 0.00 2.01
1953 1970 2.164338 GGCCGGAATTGTGGTAAAGAA 58.836 47.619 5.05 0.00 0.00 2.52
2280 2297 1.754621 TTCCAAGCCAAACACGCCA 60.755 52.632 0.00 0.00 0.00 5.69
2310 2327 1.394917 CGTAAACCTGACATGCTGCTC 59.605 52.381 0.00 0.00 0.00 4.26
2392 2409 4.451900 ACCAAGCCTAGTATACATTGCAC 58.548 43.478 5.50 0.00 0.00 4.57
2437 2454 1.807142 GAAAGACTGCTGGCTTGGTAC 59.193 52.381 13.02 1.83 0.00 3.34
2444 2461 1.002659 TGCTGGCTTGGTACGTTATGT 59.997 47.619 0.00 0.00 0.00 2.29
2715 2732 6.055231 GGTTGCAACCTTTTATTTTGAACC 57.945 37.500 36.26 9.28 45.75 3.62
2716 2733 5.586643 GGTTGCAACCTTTTATTTTGAACCA 59.413 36.000 36.26 0.00 45.75 3.67
2723 2740 7.315247 ACCTTTTATTTTGAACCAAAACAGC 57.685 32.000 6.97 0.00 44.40 4.40
2743 2760 6.476378 ACAGCAGGAGAGTTTTGTAATGTAT 58.524 36.000 0.00 0.00 0.00 2.29
2786 2803 3.201726 AGCAATGTACAACGATGCAAC 57.798 42.857 20.91 0.00 35.56 4.17
2792 2809 2.766875 TACAACGATGCAACGGCGGA 62.767 55.000 20.87 4.71 45.35 5.54
2812 2829 7.035612 GGCGGATAAAAATGATCAAAAGAAGT 58.964 34.615 0.00 0.00 0.00 3.01
2857 2874 8.895737 GCTACTCAGTTTCTGATAGTTAGTAGT 58.104 37.037 17.75 0.00 39.92 2.73
2884 2901 5.639506 TGATTGAGTTTGCTACTTGCTAGTC 59.360 40.000 3.45 0.00 43.37 2.59
2899 2916 6.480320 ACTTGCTAGTCGATGGATTGAATAAC 59.520 38.462 0.00 0.00 0.00 1.89
2919 2936 5.387113 AACTAATGCATTCCAGGGACATA 57.613 39.130 16.86 0.00 0.00 2.29
3071 3088 8.553459 TTTCTTGTTTACCAAATTTTCTTGCA 57.447 26.923 0.00 0.00 31.20 4.08
3171 3191 3.788333 ATGCCCATCTTCACAAATTCG 57.212 42.857 0.00 0.00 0.00 3.34
3178 3198 5.450412 CCCATCTTCACAAATTCGTAATGGG 60.450 44.000 0.00 0.00 43.41 4.00
3261 3283 1.740025 GCTGCGTGAGGCTAGATTTTT 59.260 47.619 0.00 0.00 44.05 1.94
3265 3287 4.127171 TGCGTGAGGCTAGATTTTTATCC 58.873 43.478 0.00 0.00 44.05 2.59
3268 3290 5.989777 GCGTGAGGCTAGATTTTTATCCTTA 59.010 40.000 0.00 0.00 39.11 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.173964 GTCGGCATTAAACGCAATGTC 58.826 47.619 3.02 3.92 38.04 3.06
2 3 1.135517 GGTCGGCATTAAACGCAATGT 60.136 47.619 0.00 0.00 38.04 2.71
3 4 1.544686 GGTCGGCATTAAACGCAATG 58.455 50.000 0.00 1.68 38.65 2.82
4 5 0.454196 GGGTCGGCATTAAACGCAAT 59.546 50.000 0.00 0.00 0.00 3.56
5 6 1.877367 GGGTCGGCATTAAACGCAA 59.123 52.632 0.00 0.00 0.00 4.85
6 7 2.392181 CGGGTCGGCATTAAACGCA 61.392 57.895 0.00 0.00 0.00 5.24
7 8 2.401990 CGGGTCGGCATTAAACGC 59.598 61.111 0.00 0.00 0.00 4.84
8 9 2.032185 GAGCGGGTCGGCATTAAACG 62.032 60.000 0.00 0.00 34.64 3.60
9 10 1.022451 TGAGCGGGTCGGCATTAAAC 61.022 55.000 2.41 0.00 34.64 2.01
10 11 0.107410 ATGAGCGGGTCGGCATTAAA 60.107 50.000 2.41 0.00 34.64 1.52
11 12 0.813610 CATGAGCGGGTCGGCATTAA 60.814 55.000 2.41 0.00 34.64 1.40
12 13 1.227527 CATGAGCGGGTCGGCATTA 60.228 57.895 2.41 0.00 34.64 1.90
13 14 2.514592 CATGAGCGGGTCGGCATT 60.515 61.111 2.41 0.00 34.64 3.56
14 15 3.030168 TTCATGAGCGGGTCGGCAT 62.030 57.895 2.41 0.00 34.64 4.40
15 16 3.700970 TTCATGAGCGGGTCGGCA 61.701 61.111 2.41 0.00 34.64 5.69
16 17 3.195698 GTTCATGAGCGGGTCGGC 61.196 66.667 2.41 0.00 0.00 5.54
17 18 2.885644 CGTTCATGAGCGGGTCGG 60.886 66.667 22.60 0.00 0.00 4.79
23 24 1.733041 ACACGTCCGTTCATGAGCG 60.733 57.895 23.26 23.26 34.75 5.03
24 25 1.626654 CCACACGTCCGTTCATGAGC 61.627 60.000 0.00 0.00 0.00 4.26
25 26 1.626654 GCCACACGTCCGTTCATGAG 61.627 60.000 0.00 0.00 0.00 2.90
26 27 1.666553 GCCACACGTCCGTTCATGA 60.667 57.895 0.00 0.00 0.00 3.07
27 28 2.677003 GGCCACACGTCCGTTCATG 61.677 63.158 0.00 0.00 0.00 3.07
28 29 2.358247 GGCCACACGTCCGTTCAT 60.358 61.111 0.00 0.00 0.00 2.57
29 30 4.953868 CGGCCACACGTCCGTTCA 62.954 66.667 2.24 0.00 40.72 3.18
34 35 3.352338 CTACTCCGGCCACACGTCC 62.352 68.421 2.24 0.00 0.00 4.79
35 36 2.181021 CTACTCCGGCCACACGTC 59.819 66.667 2.24 0.00 0.00 4.34
36 37 3.379445 CCTACTCCGGCCACACGT 61.379 66.667 2.24 0.00 0.00 4.49
37 38 2.444700 AAACCTACTCCGGCCACACG 62.445 60.000 2.24 0.00 0.00 4.49
38 39 0.672711 GAAACCTACTCCGGCCACAC 60.673 60.000 2.24 0.00 0.00 3.82
39 40 0.834687 AGAAACCTACTCCGGCCACA 60.835 55.000 2.24 0.00 0.00 4.17
40 41 0.108281 GAGAAACCTACTCCGGCCAC 60.108 60.000 2.24 0.00 0.00 5.01
41 42 1.601419 CGAGAAACCTACTCCGGCCA 61.601 60.000 2.24 0.00 0.00 5.36
42 43 1.141234 CGAGAAACCTACTCCGGCC 59.859 63.158 0.00 0.00 0.00 6.13
43 44 1.141234 CCGAGAAACCTACTCCGGC 59.859 63.158 0.00 0.00 0.00 6.13
44 45 1.141234 GCCGAGAAACCTACTCCGG 59.859 63.158 0.00 0.00 34.14 5.14
45 46 0.531200 AAGCCGAGAAACCTACTCCG 59.469 55.000 0.00 0.00 0.00 4.63
46 47 1.134759 GGAAGCCGAGAAACCTACTCC 60.135 57.143 0.00 0.00 0.00 3.85
47 48 1.549170 TGGAAGCCGAGAAACCTACTC 59.451 52.381 0.00 0.00 0.00 2.59
48 49 1.275573 GTGGAAGCCGAGAAACCTACT 59.724 52.381 0.00 0.00 0.00 2.57
49 50 1.001633 TGTGGAAGCCGAGAAACCTAC 59.998 52.381 0.00 0.00 0.00 3.18
50 51 1.001633 GTGTGGAAGCCGAGAAACCTA 59.998 52.381 0.00 0.00 0.00 3.08
51 52 0.250338 GTGTGGAAGCCGAGAAACCT 60.250 55.000 0.00 0.00 0.00 3.50
52 53 1.566018 CGTGTGGAAGCCGAGAAACC 61.566 60.000 0.00 0.00 0.00 3.27
53 54 1.566018 CCGTGTGGAAGCCGAGAAAC 61.566 60.000 0.00 0.00 37.49 2.78
54 55 1.301401 CCGTGTGGAAGCCGAGAAA 60.301 57.895 0.00 0.00 37.49 2.52
55 56 2.342279 CCGTGTGGAAGCCGAGAA 59.658 61.111 0.00 0.00 37.49 2.87
56 57 3.691342 CCCGTGTGGAAGCCGAGA 61.691 66.667 0.00 0.00 37.49 4.04
57 58 3.530910 AACCCGTGTGGAAGCCGAG 62.531 63.158 0.00 0.00 37.49 4.63
58 59 1.756408 TAAACCCGTGTGGAAGCCGA 61.756 55.000 0.00 0.00 37.49 5.54
59 60 0.885596 TTAAACCCGTGTGGAAGCCG 60.886 55.000 0.00 0.00 37.49 5.52
60 61 1.201414 CATTAAACCCGTGTGGAAGCC 59.799 52.381 0.00 0.00 37.49 4.35
61 62 2.156098 TCATTAAACCCGTGTGGAAGC 58.844 47.619 0.00 0.00 37.49 3.86
62 63 3.190535 CCTTCATTAAACCCGTGTGGAAG 59.809 47.826 0.00 0.00 37.49 3.46
63 64 3.150767 CCTTCATTAAACCCGTGTGGAA 58.849 45.455 0.00 0.00 37.49 3.53
64 65 2.785562 CCTTCATTAAACCCGTGTGGA 58.214 47.619 0.00 0.00 37.49 4.02
65 66 1.201414 GCCTTCATTAAACCCGTGTGG 59.799 52.381 0.00 0.00 41.37 4.17
66 67 1.135803 CGCCTTCATTAAACCCGTGTG 60.136 52.381 0.00 0.00 0.00 3.82
67 68 1.161843 CGCCTTCATTAAACCCGTGT 58.838 50.000 0.00 0.00 0.00 4.49
68 69 1.161843 ACGCCTTCATTAAACCCGTG 58.838 50.000 0.00 0.00 0.00 4.94
69 70 1.900245 AACGCCTTCATTAAACCCGT 58.100 45.000 0.00 0.00 0.00 5.28
70 71 2.226912 TCAAACGCCTTCATTAAACCCG 59.773 45.455 0.00 0.00 0.00 5.28
71 72 3.926821 TCAAACGCCTTCATTAAACCC 57.073 42.857 0.00 0.00 0.00 4.11
72 73 5.465935 TCATTCAAACGCCTTCATTAAACC 58.534 37.500 0.00 0.00 0.00 3.27
73 74 5.572896 CCTCATTCAAACGCCTTCATTAAAC 59.427 40.000 0.00 0.00 0.00 2.01
74 75 5.708948 CCTCATTCAAACGCCTTCATTAAA 58.291 37.500 0.00 0.00 0.00 1.52
75 76 4.380444 GCCTCATTCAAACGCCTTCATTAA 60.380 41.667 0.00 0.00 0.00 1.40
76 77 3.128589 GCCTCATTCAAACGCCTTCATTA 59.871 43.478 0.00 0.00 0.00 1.90
77 78 2.094545 GCCTCATTCAAACGCCTTCATT 60.095 45.455 0.00 0.00 0.00 2.57
78 79 1.474077 GCCTCATTCAAACGCCTTCAT 59.526 47.619 0.00 0.00 0.00 2.57
79 80 0.881118 GCCTCATTCAAACGCCTTCA 59.119 50.000 0.00 0.00 0.00 3.02
80 81 0.179189 CGCCTCATTCAAACGCCTTC 60.179 55.000 0.00 0.00 0.00 3.46
81 82 1.586154 CCGCCTCATTCAAACGCCTT 61.586 55.000 0.00 0.00 0.00 4.35
82 83 2.040544 CCGCCTCATTCAAACGCCT 61.041 57.895 0.00 0.00 0.00 5.52
83 84 2.485122 CCGCCTCATTCAAACGCC 59.515 61.111 0.00 0.00 0.00 5.68
84 85 2.202479 GCCGCCTCATTCAAACGC 60.202 61.111 0.00 0.00 0.00 4.84
85 86 2.098298 CGCCGCCTCATTCAAACG 59.902 61.111 0.00 0.00 0.00 3.60
86 87 1.425428 CTCGCCGCCTCATTCAAAC 59.575 57.895 0.00 0.00 0.00 2.93
87 88 1.745115 CCTCGCCGCCTCATTCAAA 60.745 57.895 0.00 0.00 0.00 2.69
88 89 2.125147 CCTCGCCGCCTCATTCAA 60.125 61.111 0.00 0.00 0.00 2.69
89 90 4.838152 GCCTCGCCGCCTCATTCA 62.838 66.667 0.00 0.00 0.00 2.57
99 100 3.112709 GACTGAACACGCCTCGCC 61.113 66.667 0.00 0.00 0.00 5.54
100 101 3.470567 CGACTGAACACGCCTCGC 61.471 66.667 0.00 0.00 0.00 5.03
101 102 2.805353 CCGACTGAACACGCCTCG 60.805 66.667 0.00 0.00 0.00 4.63
102 103 2.432628 CCCGACTGAACACGCCTC 60.433 66.667 0.00 0.00 0.00 4.70
103 104 4.681978 GCCCGACTGAACACGCCT 62.682 66.667 0.00 0.00 0.00 5.52
147 148 3.508840 GGTCATTGAAGCGGGGCG 61.509 66.667 0.00 0.00 0.00 6.13
148 149 3.508840 CGGTCATTGAAGCGGGGC 61.509 66.667 0.00 0.00 36.55 5.80
149 150 1.815421 CTCGGTCATTGAAGCGGGG 60.815 63.158 0.00 0.00 40.39 5.73
150 151 1.815421 CCTCGGTCATTGAAGCGGG 60.815 63.158 0.00 0.00 40.24 6.13
151 152 2.464459 GCCTCGGTCATTGAAGCGG 61.464 63.158 0.00 0.00 40.39 5.52
152 153 1.699656 CTGCCTCGGTCATTGAAGCG 61.700 60.000 0.00 0.00 41.30 4.68
153 154 0.674895 ACTGCCTCGGTCATTGAAGC 60.675 55.000 0.00 0.00 0.00 3.86
154 155 1.813513 AACTGCCTCGGTCATTGAAG 58.186 50.000 0.00 0.00 0.00 3.02
155 156 2.565391 TCTAACTGCCTCGGTCATTGAA 59.435 45.455 0.00 0.00 0.00 2.69
156 157 2.166459 CTCTAACTGCCTCGGTCATTGA 59.834 50.000 0.00 0.00 0.00 2.57
157 158 2.544685 CTCTAACTGCCTCGGTCATTG 58.455 52.381 0.00 0.00 0.00 2.82
158 159 1.482593 CCTCTAACTGCCTCGGTCATT 59.517 52.381 0.00 0.00 0.00 2.57
159 160 1.115467 CCTCTAACTGCCTCGGTCAT 58.885 55.000 0.00 0.00 0.00 3.06
160 161 0.251653 ACCTCTAACTGCCTCGGTCA 60.252 55.000 0.00 0.00 0.00 4.02
161 162 0.456628 GACCTCTAACTGCCTCGGTC 59.543 60.000 0.00 0.00 34.79 4.79
162 163 1.313812 CGACCTCTAACTGCCTCGGT 61.314 60.000 0.00 0.00 0.00 4.69
163 164 1.433879 CGACCTCTAACTGCCTCGG 59.566 63.158 0.00 0.00 0.00 4.63
164 165 1.226717 GCGACCTCTAACTGCCTCG 60.227 63.158 0.00 0.00 0.00 4.63
165 166 1.226717 CGCGACCTCTAACTGCCTC 60.227 63.158 0.00 0.00 0.00 4.70
166 167 1.935327 GACGCGACCTCTAACTGCCT 61.935 60.000 15.93 0.00 0.00 4.75
167 168 1.516603 GACGCGACCTCTAACTGCC 60.517 63.158 15.93 0.00 0.00 4.85
168 169 1.516603 GGACGCGACCTCTAACTGC 60.517 63.158 20.46 0.00 0.00 4.40
169 170 1.226323 CGGACGCGACCTCTAACTG 60.226 63.158 24.38 4.12 0.00 3.16
170 171 3.048941 GCGGACGCGACCTCTAACT 62.049 63.158 24.38 0.00 0.00 2.24
171 172 2.578981 GCGGACGCGACCTCTAAC 60.579 66.667 24.38 5.96 0.00 2.34
172 173 3.818787 GGCGGACGCGACCTCTAA 61.819 66.667 24.38 0.00 43.06 2.10
187 188 2.048603 ATTGAAAGCGGCTCAGGGC 61.049 57.895 1.45 0.00 40.90 5.19
188 189 0.962356 ACATTGAAAGCGGCTCAGGG 60.962 55.000 1.45 0.00 0.00 4.45
189 190 0.169672 CACATTGAAAGCGGCTCAGG 59.830 55.000 1.45 0.00 0.00 3.86
190 191 0.169672 CCACATTGAAAGCGGCTCAG 59.830 55.000 1.45 0.00 0.00 3.35
191 192 0.250684 TCCACATTGAAAGCGGCTCA 60.251 50.000 1.45 0.00 0.00 4.26
192 193 0.449388 CTCCACATTGAAAGCGGCTC 59.551 55.000 1.45 0.00 0.00 4.70
193 194 1.589716 GCTCCACATTGAAAGCGGCT 61.590 55.000 0.00 0.00 0.00 5.52
194 195 1.153958 GCTCCACATTGAAAGCGGC 60.154 57.895 0.00 0.00 0.00 6.53
197 198 1.153958 GCCGCTCCACATTGAAAGC 60.154 57.895 0.00 0.00 0.00 3.51
198 199 0.813184 ATGCCGCTCCACATTGAAAG 59.187 50.000 0.00 0.00 0.00 2.62
199 200 0.527113 CATGCCGCTCCACATTGAAA 59.473 50.000 0.00 0.00 0.00 2.69
200 201 0.322366 TCATGCCGCTCCACATTGAA 60.322 50.000 0.00 0.00 0.00 2.69
201 202 0.322366 TTCATGCCGCTCCACATTGA 60.322 50.000 0.00 0.00 0.00 2.57
202 203 0.742505 ATTCATGCCGCTCCACATTG 59.257 50.000 0.00 0.00 0.00 2.82
203 204 0.742505 CATTCATGCCGCTCCACATT 59.257 50.000 0.00 0.00 0.00 2.71
204 205 2.411535 CATTCATGCCGCTCCACAT 58.588 52.632 0.00 0.00 0.00 3.21
205 206 3.908189 CATTCATGCCGCTCCACA 58.092 55.556 0.00 0.00 0.00 4.17
215 216 1.725665 CCAGCTGGTCGCATTCATG 59.274 57.895 25.53 0.00 42.61 3.07
216 217 2.117156 GCCAGCTGGTCGCATTCAT 61.117 57.895 32.81 0.00 42.61 2.57
217 218 2.747460 GCCAGCTGGTCGCATTCA 60.747 61.111 32.81 0.00 42.61 2.57
218 219 3.869272 CGCCAGCTGGTCGCATTC 61.869 66.667 32.81 13.99 42.61 2.67
230 231 3.121030 CTTCTTGTCGGGCGCCAG 61.121 66.667 30.85 26.21 0.00 4.85
235 236 4.090057 GTGCGCTTCTTGTCGGGC 62.090 66.667 9.73 0.00 39.27 6.13
236 237 2.664851 TGTGCGCTTCTTGTCGGG 60.665 61.111 9.73 0.00 0.00 5.14
237 238 2.551270 GTGTGCGCTTCTTGTCGG 59.449 61.111 9.73 0.00 0.00 4.79
238 239 2.168621 CGTGTGCGCTTCTTGTCG 59.831 61.111 9.73 0.10 0.00 4.35
239 240 2.551270 CCGTGTGCGCTTCTTGTC 59.449 61.111 9.73 0.00 36.67 3.18
240 241 2.972505 CCCGTGTGCGCTTCTTGT 60.973 61.111 9.73 0.00 36.67 3.16
241 242 2.664851 TCCCGTGTGCGCTTCTTG 60.665 61.111 9.73 0.00 36.67 3.02
242 243 2.357517 CTCCCGTGTGCGCTTCTT 60.358 61.111 9.73 0.00 36.67 2.52
243 244 4.379243 CCTCCCGTGTGCGCTTCT 62.379 66.667 9.73 0.00 36.67 2.85
248 249 4.760047 CTTCCCCTCCCGTGTGCG 62.760 72.222 0.00 0.00 37.95 5.34
249 250 4.410400 CCTTCCCCTCCCGTGTGC 62.410 72.222 0.00 0.00 0.00 4.57
250 251 3.717294 CCCTTCCCCTCCCGTGTG 61.717 72.222 0.00 0.00 0.00 3.82
251 252 2.782997 AATCCCTTCCCCTCCCGTGT 62.783 60.000 0.00 0.00 0.00 4.49
252 253 1.571773 AAATCCCTTCCCCTCCCGTG 61.572 60.000 0.00 0.00 0.00 4.94
253 254 0.849540 AAAATCCCTTCCCCTCCCGT 60.850 55.000 0.00 0.00 0.00 5.28
254 255 0.335019 AAAAATCCCTTCCCCTCCCG 59.665 55.000 0.00 0.00 0.00 5.14
255 256 1.361197 TCAAAAATCCCTTCCCCTCCC 59.639 52.381 0.00 0.00 0.00 4.30
256 257 2.919772 TCAAAAATCCCTTCCCCTCC 57.080 50.000 0.00 0.00 0.00 4.30
257 258 4.474394 CCTATCAAAAATCCCTTCCCCTC 58.526 47.826 0.00 0.00 0.00 4.30
258 259 3.374208 GCCTATCAAAAATCCCTTCCCCT 60.374 47.826 0.00 0.00 0.00 4.79
259 260 2.965831 GCCTATCAAAAATCCCTTCCCC 59.034 50.000 0.00 0.00 0.00 4.81
260 261 2.965831 GGCCTATCAAAAATCCCTTCCC 59.034 50.000 0.00 0.00 0.00 3.97
261 262 3.638627 CTGGCCTATCAAAAATCCCTTCC 59.361 47.826 3.32 0.00 0.00 3.46
262 263 3.638627 CCTGGCCTATCAAAAATCCCTTC 59.361 47.826 3.32 0.00 0.00 3.46
263 264 3.630828 CCCTGGCCTATCAAAAATCCCTT 60.631 47.826 3.32 0.00 0.00 3.95
264 265 2.091111 CCCTGGCCTATCAAAAATCCCT 60.091 50.000 3.32 0.00 0.00 4.20
265 266 2.319844 CCCTGGCCTATCAAAAATCCC 58.680 52.381 3.32 0.00 0.00 3.85
266 267 1.688735 GCCCTGGCCTATCAAAAATCC 59.311 52.381 3.32 0.00 34.56 3.01
267 268 1.338020 CGCCCTGGCCTATCAAAAATC 59.662 52.381 3.32 0.00 37.98 2.17
268 269 1.402787 CGCCCTGGCCTATCAAAAAT 58.597 50.000 3.32 0.00 37.98 1.82
269 270 0.682855 CCGCCCTGGCCTATCAAAAA 60.683 55.000 3.32 0.00 37.98 1.94
270 271 1.077068 CCGCCCTGGCCTATCAAAA 60.077 57.895 3.32 0.00 37.98 2.44
271 272 2.265467 GACCGCCCTGGCCTATCAAA 62.265 60.000 3.32 0.00 43.94 2.69
272 273 2.690881 ACCGCCCTGGCCTATCAA 60.691 61.111 3.32 0.00 43.94 2.57
273 274 3.161450 GACCGCCCTGGCCTATCA 61.161 66.667 3.32 0.00 43.94 2.15
274 275 3.161450 TGACCGCCCTGGCCTATC 61.161 66.667 3.32 0.00 43.94 2.08
275 276 3.164269 CTGACCGCCCTGGCCTAT 61.164 66.667 3.32 0.00 43.94 2.57
276 277 3.916438 TTCTGACCGCCCTGGCCTA 62.916 63.158 3.32 0.00 43.94 3.93
278 279 4.785453 CTTCTGACCGCCCTGGCC 62.785 72.222 1.86 0.00 43.94 5.36
286 287 3.197790 CATGCCCGCTTCTGACCG 61.198 66.667 0.00 0.00 0.00 4.79
287 288 2.825836 CCATGCCCGCTTCTGACC 60.826 66.667 0.00 0.00 0.00 4.02
288 289 2.615227 ATCCCATGCCCGCTTCTGAC 62.615 60.000 0.00 0.00 0.00 3.51
289 290 2.329539 GATCCCATGCCCGCTTCTGA 62.330 60.000 0.00 0.00 0.00 3.27
290 291 1.895707 GATCCCATGCCCGCTTCTG 60.896 63.158 0.00 0.00 0.00 3.02
291 292 2.512896 GATCCCATGCCCGCTTCT 59.487 61.111 0.00 0.00 0.00 2.85
292 293 2.974698 CGATCCCATGCCCGCTTC 60.975 66.667 0.00 0.00 0.00 3.86
293 294 4.569180 CCGATCCCATGCCCGCTT 62.569 66.667 0.00 0.00 0.00 4.68
296 297 4.626081 GGACCGATCCCATGCCCG 62.626 72.222 0.00 0.00 39.39 6.13
297 298 4.626081 CGGACCGATCCCATGCCC 62.626 72.222 8.64 0.00 42.83 5.36
298 299 4.626081 CCGGACCGATCCCATGCC 62.626 72.222 17.49 0.00 42.83 4.40
299 300 3.546543 TCCGGACCGATCCCATGC 61.547 66.667 17.49 0.00 42.83 4.06
300 301 2.088674 GAGTCCGGACCGATCCCATG 62.089 65.000 30.82 0.00 42.83 3.66
301 302 1.833049 GAGTCCGGACCGATCCCAT 60.833 63.158 30.82 9.91 42.83 4.00
302 303 2.441532 GAGTCCGGACCGATCCCA 60.442 66.667 30.82 0.00 42.83 4.37
303 304 3.225061 GGAGTCCGGACCGATCCC 61.225 72.222 30.82 19.11 42.83 3.85
304 305 3.225061 GGGAGTCCGGACCGATCC 61.225 72.222 30.82 28.06 42.28 3.36
314 315 1.153147 GGGAGATTTGCGGGAGTCC 60.153 63.158 0.00 0.00 0.00 3.85
315 316 1.153147 GGGGAGATTTGCGGGAGTC 60.153 63.158 0.00 0.00 0.00 3.36
316 317 1.923395 TGGGGAGATTTGCGGGAGT 60.923 57.895 0.00 0.00 0.00 3.85
317 318 1.452108 GTGGGGAGATTTGCGGGAG 60.452 63.158 0.00 0.00 0.00 4.30
318 319 2.674754 GTGGGGAGATTTGCGGGA 59.325 61.111 0.00 0.00 0.00 5.14
319 320 2.824041 CGTGGGGAGATTTGCGGG 60.824 66.667 0.00 0.00 0.00 6.13
320 321 1.241315 AAACGTGGGGAGATTTGCGG 61.241 55.000 0.00 0.00 0.00 5.69
321 322 0.109781 CAAACGTGGGGAGATTTGCG 60.110 55.000 0.00 0.00 0.00 4.85
322 323 0.958822 ACAAACGTGGGGAGATTTGC 59.041 50.000 0.00 0.00 35.83 3.68
323 324 2.484264 GAGACAAACGTGGGGAGATTTG 59.516 50.000 0.00 0.00 37.91 2.32
324 325 2.552373 GGAGACAAACGTGGGGAGATTT 60.552 50.000 0.00 0.00 0.00 2.17
325 326 1.003233 GGAGACAAACGTGGGGAGATT 59.997 52.381 0.00 0.00 0.00 2.40
326 327 0.613777 GGAGACAAACGTGGGGAGAT 59.386 55.000 0.00 0.00 0.00 2.75
327 328 0.471211 AGGAGACAAACGTGGGGAGA 60.471 55.000 0.00 0.00 0.00 3.71
328 329 0.320771 CAGGAGACAAACGTGGGGAG 60.321 60.000 0.00 0.00 0.00 4.30
329 330 1.052124 ACAGGAGACAAACGTGGGGA 61.052 55.000 0.00 0.00 0.00 4.81
330 331 0.179029 AACAGGAGACAAACGTGGGG 60.179 55.000 0.00 0.00 0.00 4.96
331 332 1.675552 AAACAGGAGACAAACGTGGG 58.324 50.000 0.00 0.00 0.00 4.61
332 333 2.220133 CGTAAACAGGAGACAAACGTGG 59.780 50.000 0.00 0.00 0.00 4.94
333 334 2.220133 CCGTAAACAGGAGACAAACGTG 59.780 50.000 0.00 0.00 0.00 4.49
334 335 2.476821 CCGTAAACAGGAGACAAACGT 58.523 47.619 0.00 0.00 0.00 3.99
335 336 1.796459 CCCGTAAACAGGAGACAAACG 59.204 52.381 0.00 0.00 0.00 3.60
336 337 3.116079 TCCCGTAAACAGGAGACAAAC 57.884 47.619 0.00 0.00 0.00 2.93
343 344 3.469739 GTGTTTTCTCCCGTAAACAGGA 58.530 45.455 0.00 0.00 42.86 3.86
344 345 2.222445 CGTGTTTTCTCCCGTAAACAGG 59.778 50.000 0.00 0.00 42.86 4.00
345 346 2.867975 ACGTGTTTTCTCCCGTAAACAG 59.132 45.455 0.00 0.00 42.86 3.16
346 347 2.865551 GACGTGTTTTCTCCCGTAAACA 59.134 45.455 0.00 0.00 40.76 2.83
347 348 2.221749 GGACGTGTTTTCTCCCGTAAAC 59.778 50.000 0.00 0.00 35.38 2.01
348 349 2.482864 GGACGTGTTTTCTCCCGTAAA 58.517 47.619 0.00 0.00 33.03 2.01
349 350 1.602668 CGGACGTGTTTTCTCCCGTAA 60.603 52.381 0.00 0.00 33.03 3.18
350 351 0.039256 CGGACGTGTTTTCTCCCGTA 60.039 55.000 0.00 0.00 33.03 4.02
351 352 1.300388 CGGACGTGTTTTCTCCCGT 60.300 57.895 0.00 0.00 36.04 5.28
352 353 0.598158 TTCGGACGTGTTTTCTCCCG 60.598 55.000 0.00 0.00 38.41 5.14
353 354 0.863799 GTTCGGACGTGTTTTCTCCC 59.136 55.000 0.00 0.00 0.00 4.30
354 355 0.863799 GGTTCGGACGTGTTTTCTCC 59.136 55.000 0.00 0.00 0.00 3.71
355 356 0.505655 CGGTTCGGACGTGTTTTCTC 59.494 55.000 0.00 0.00 0.00 2.87
356 357 1.493134 GCGGTTCGGACGTGTTTTCT 61.493 55.000 0.00 0.00 0.00 2.52
357 358 1.083209 GCGGTTCGGACGTGTTTTC 60.083 57.895 0.00 0.00 0.00 2.29
358 359 2.873604 CGCGGTTCGGACGTGTTTT 61.874 57.895 0.00 0.00 37.10 2.43
359 360 3.332409 CGCGGTTCGGACGTGTTT 61.332 61.111 0.00 0.00 37.10 2.83
371 372 3.943479 TATCGGTTTGCAGCGCGGT 62.943 57.895 4.23 4.23 43.85 5.68
372 373 3.192230 TATCGGTTTGCAGCGCGG 61.192 61.111 8.83 2.11 43.85 6.46
373 374 2.021380 GTATCGGTTTGCAGCGCG 59.979 61.111 0.00 0.00 43.85 6.86
374 375 0.521242 CTTGTATCGGTTTGCAGCGC 60.521 55.000 0.00 0.00 43.85 5.92
375 376 1.075542 TCTTGTATCGGTTTGCAGCG 58.924 50.000 0.00 0.00 45.61 5.18
376 377 2.076863 AGTCTTGTATCGGTTTGCAGC 58.923 47.619 0.00 0.00 0.00 5.25
377 378 3.067106 ACAGTCTTGTATCGGTTTGCAG 58.933 45.455 0.00 0.00 35.25 4.41
378 379 2.805671 CACAGTCTTGTATCGGTTTGCA 59.194 45.455 0.00 0.00 35.25 4.08
379 380 2.806244 ACACAGTCTTGTATCGGTTTGC 59.194 45.455 0.00 0.00 35.25 3.68
380 381 4.319477 CCAACACAGTCTTGTATCGGTTTG 60.319 45.833 0.00 0.00 35.25 2.93
381 382 3.813166 CCAACACAGTCTTGTATCGGTTT 59.187 43.478 0.00 0.00 35.25 3.27
382 383 3.070446 TCCAACACAGTCTTGTATCGGTT 59.930 43.478 0.00 0.00 35.25 4.44
383 384 2.631062 TCCAACACAGTCTTGTATCGGT 59.369 45.455 0.00 0.00 35.25 4.69
384 385 3.313012 TCCAACACAGTCTTGTATCGG 57.687 47.619 0.00 0.00 35.25 4.18
385 386 4.327357 GTCATCCAACACAGTCTTGTATCG 59.673 45.833 0.00 0.00 35.25 2.92
386 387 5.482908 AGTCATCCAACACAGTCTTGTATC 58.517 41.667 0.00 0.00 35.25 2.24
387 388 5.489792 AGTCATCCAACACAGTCTTGTAT 57.510 39.130 0.00 0.00 35.25 2.29
388 389 4.955811 AGTCATCCAACACAGTCTTGTA 57.044 40.909 0.00 0.00 35.25 2.41
389 390 3.845781 AGTCATCCAACACAGTCTTGT 57.154 42.857 0.00 0.00 38.31 3.16
390 391 4.739046 GAAGTCATCCAACACAGTCTTG 57.261 45.455 0.00 0.00 0.00 3.02
403 404 2.691409 TTCGGACCATGGAAGTCATC 57.309 50.000 21.47 3.68 35.89 2.92
404 405 3.495100 GCTATTCGGACCATGGAAGTCAT 60.495 47.826 21.47 7.21 35.89 3.06
405 406 2.158957 GCTATTCGGACCATGGAAGTCA 60.159 50.000 21.47 0.00 35.89 3.41
406 407 2.158957 TGCTATTCGGACCATGGAAGTC 60.159 50.000 21.47 5.38 0.00 3.01
407 408 1.837439 TGCTATTCGGACCATGGAAGT 59.163 47.619 21.47 0.00 0.00 3.01
408 409 2.213499 GTGCTATTCGGACCATGGAAG 58.787 52.381 21.47 9.15 0.00 3.46
409 410 1.472552 CGTGCTATTCGGACCATGGAA 60.473 52.381 21.47 1.63 0.00 3.53
410 411 0.104120 CGTGCTATTCGGACCATGGA 59.896 55.000 21.47 0.00 0.00 3.41
411 412 2.605094 CGTGCTATTCGGACCATGG 58.395 57.895 11.19 11.19 0.00 3.66
419 420 1.588139 GTCCGGACCGTGCTATTCG 60.588 63.158 24.75 0.00 0.00 3.34
420 421 0.108520 TTGTCCGGACCGTGCTATTC 60.109 55.000 31.19 3.08 0.00 1.75
421 422 0.539986 ATTGTCCGGACCGTGCTATT 59.460 50.000 31.19 5.57 0.00 1.73
422 423 0.539986 AATTGTCCGGACCGTGCTAT 59.460 50.000 31.19 11.97 0.00 2.97
423 424 0.390603 CAATTGTCCGGACCGTGCTA 60.391 55.000 31.19 9.20 0.00 3.49
424 425 1.671054 CAATTGTCCGGACCGTGCT 60.671 57.895 31.19 8.93 0.00 4.40
425 426 2.867472 CAATTGTCCGGACCGTGC 59.133 61.111 31.19 7.14 0.00 5.34
426 427 1.911293 CTGCAATTGTCCGGACCGTG 61.911 60.000 31.19 24.55 0.00 4.94
427 428 1.671054 CTGCAATTGTCCGGACCGT 60.671 57.895 31.19 17.10 0.00 4.83
428 429 2.398554 CCTGCAATTGTCCGGACCG 61.399 63.158 31.19 17.59 0.00 4.79
429 430 1.002624 TCCTGCAATTGTCCGGACC 60.003 57.895 31.19 15.97 0.00 4.46
430 431 0.321653 ACTCCTGCAATTGTCCGGAC 60.322 55.000 28.17 28.17 0.00 4.79
431 432 0.400213 AACTCCTGCAATTGTCCGGA 59.600 50.000 0.00 0.00 0.00 5.14
432 433 0.804989 GAACTCCTGCAATTGTCCGG 59.195 55.000 7.40 0.00 0.00 5.14
433 434 1.466167 CAGAACTCCTGCAATTGTCCG 59.534 52.381 7.40 0.00 35.89 4.79
434 435 2.746362 CTCAGAACTCCTGCAATTGTCC 59.254 50.000 7.40 0.00 42.62 4.02
435 436 2.746362 CCTCAGAACTCCTGCAATTGTC 59.254 50.000 7.40 0.07 42.62 3.18
436 437 2.553904 CCCTCAGAACTCCTGCAATTGT 60.554 50.000 7.40 0.00 42.62 2.71
437 438 2.089980 CCCTCAGAACTCCTGCAATTG 58.910 52.381 0.00 0.00 42.62 2.32
438 439 1.707427 ACCCTCAGAACTCCTGCAATT 59.293 47.619 0.00 0.00 42.62 2.32
439 440 1.280421 GACCCTCAGAACTCCTGCAAT 59.720 52.381 0.00 0.00 42.62 3.56
440 441 0.687354 GACCCTCAGAACTCCTGCAA 59.313 55.000 0.00 0.00 42.62 4.08
441 442 1.536073 CGACCCTCAGAACTCCTGCA 61.536 60.000 0.00 0.00 42.62 4.41
442 443 1.216710 CGACCCTCAGAACTCCTGC 59.783 63.158 0.00 0.00 42.62 4.85
443 444 1.893786 CCGACCCTCAGAACTCCTG 59.106 63.158 0.00 0.00 44.27 3.86
444 445 1.985116 GCCGACCCTCAGAACTCCT 60.985 63.158 0.00 0.00 0.00 3.69
445 446 2.579738 GCCGACCCTCAGAACTCC 59.420 66.667 0.00 0.00 0.00 3.85
446 447 2.156051 AACGCCGACCCTCAGAACTC 62.156 60.000 0.00 0.00 0.00 3.01
447 448 2.207924 AACGCCGACCCTCAGAACT 61.208 57.895 0.00 0.00 0.00 3.01
448 449 2.027625 CAACGCCGACCCTCAGAAC 61.028 63.158 0.00 0.00 0.00 3.01
449 450 2.342279 CAACGCCGACCCTCAGAA 59.658 61.111 0.00 0.00 0.00 3.02
450 451 4.373116 GCAACGCCGACCCTCAGA 62.373 66.667 0.00 0.00 0.00 3.27
476 477 0.178990 AGCGAGGGCCACTTCTTTTT 60.179 50.000 6.18 0.00 41.24 1.94
477 478 0.690762 TAGCGAGGGCCACTTCTTTT 59.309 50.000 6.18 0.00 41.24 2.27
478 479 0.912486 ATAGCGAGGGCCACTTCTTT 59.088 50.000 6.18 0.00 41.24 2.52
479 480 0.466124 GATAGCGAGGGCCACTTCTT 59.534 55.000 6.18 0.00 41.24 2.52
480 481 1.739338 CGATAGCGAGGGCCACTTCT 61.739 60.000 6.18 1.90 41.24 2.85
481 482 1.300233 CGATAGCGAGGGCCACTTC 60.300 63.158 6.18 0.00 41.24 3.01
482 483 2.058595 ACGATAGCGAGGGCCACTT 61.059 57.895 7.69 0.00 41.24 3.16
483 484 2.442272 ACGATAGCGAGGGCCACT 60.442 61.111 7.69 2.12 41.24 4.00
484 485 2.279517 CACGATAGCGAGGGCCAC 60.280 66.667 7.69 0.00 41.24 5.01
485 486 4.221422 GCACGATAGCGAGGGCCA 62.221 66.667 7.69 0.00 41.24 5.36
486 487 4.971125 GGCACGATAGCGAGGGCC 62.971 72.222 7.69 13.43 42.02 5.80
487 488 4.971125 GGGCACGATAGCGAGGGC 62.971 72.222 7.69 11.11 41.64 5.19
488 489 3.214250 GAGGGCACGATAGCGAGGG 62.214 68.421 7.69 0.00 41.64 4.30
489 490 2.336809 GAGGGCACGATAGCGAGG 59.663 66.667 7.69 0.00 41.64 4.63
490 491 2.336809 GGAGGGCACGATAGCGAG 59.663 66.667 7.69 0.00 41.64 5.03
491 492 2.441348 TGGAGGGCACGATAGCGA 60.441 61.111 7.69 0.00 41.64 4.93
492 493 2.279517 GTGGAGGGCACGATAGCG 60.280 66.667 0.00 0.00 44.79 4.26
493 494 2.109181 GGTGGAGGGCACGATAGC 59.891 66.667 0.00 0.00 42.67 2.97
494 495 1.742768 GAGGTGGAGGGCACGATAG 59.257 63.158 0.00 0.00 46.19 2.08
495 496 2.125326 CGAGGTGGAGGGCACGATA 61.125 63.158 0.00 0.00 0.00 2.92
496 497 3.461773 CGAGGTGGAGGGCACGAT 61.462 66.667 0.00 0.00 0.00 3.73
502 503 3.402681 ATGTGCCGAGGTGGAGGG 61.403 66.667 0.00 0.00 42.00 4.30
503 504 2.124983 CATGTGCCGAGGTGGAGG 60.125 66.667 0.00 0.00 42.00 4.30
504 505 2.821366 GCATGTGCCGAGGTGGAG 60.821 66.667 0.00 0.00 42.00 3.86
505 506 1.621672 TATGCATGTGCCGAGGTGGA 61.622 55.000 10.16 0.00 42.00 4.02
506 507 0.535780 ATATGCATGTGCCGAGGTGG 60.536 55.000 10.16 0.00 41.18 4.61
507 508 1.265095 GAATATGCATGTGCCGAGGTG 59.735 52.381 10.16 0.00 41.18 4.00
508 509 1.141657 AGAATATGCATGTGCCGAGGT 59.858 47.619 10.16 0.00 41.18 3.85
509 510 1.888215 AGAATATGCATGTGCCGAGG 58.112 50.000 10.16 0.00 41.18 4.63
510 511 3.976793 AAAGAATATGCATGTGCCGAG 57.023 42.857 10.16 0.00 41.18 4.63
511 512 4.717233 AAAAAGAATATGCATGTGCCGA 57.283 36.364 10.16 0.00 41.18 5.54
529 530 1.070289 TGCATGTGCCATGCTCAAAAA 59.930 42.857 28.58 13.42 44.79 1.94
530 531 0.680061 TGCATGTGCCATGCTCAAAA 59.320 45.000 28.58 13.95 44.79 2.44
531 532 0.899019 ATGCATGTGCCATGCTCAAA 59.101 45.000 28.58 16.25 44.79 2.69
532 533 1.765230 TATGCATGTGCCATGCTCAA 58.235 45.000 28.58 16.52 44.79 3.02
533 534 1.989706 ATATGCATGTGCCATGCTCA 58.010 45.000 28.58 20.50 44.79 4.26
534 535 2.667448 CGAATATGCATGTGCCATGCTC 60.667 50.000 28.58 20.49 44.79 4.26
535 536 1.268625 CGAATATGCATGTGCCATGCT 59.731 47.619 28.58 20.27 44.79 3.79
536 537 1.001048 ACGAATATGCATGTGCCATGC 60.001 47.619 24.69 24.69 44.76 4.06
537 538 3.120095 CCTACGAATATGCATGTGCCATG 60.120 47.826 10.16 9.94 41.18 3.66
538 539 3.076621 CCTACGAATATGCATGTGCCAT 58.923 45.455 10.16 0.00 41.18 4.40
539 540 2.158827 ACCTACGAATATGCATGTGCCA 60.159 45.455 10.16 0.00 41.18 4.92
540 541 2.494059 ACCTACGAATATGCATGTGCC 58.506 47.619 10.16 0.00 41.18 5.01
541 542 4.509970 TGTAACCTACGAATATGCATGTGC 59.490 41.667 10.16 0.00 42.50 4.57
542 543 5.753438 ACTGTAACCTACGAATATGCATGTG 59.247 40.000 10.16 0.00 0.00 3.21
543 544 5.914033 ACTGTAACCTACGAATATGCATGT 58.086 37.500 10.16 0.00 0.00 3.21
544 545 6.216569 AGACTGTAACCTACGAATATGCATG 58.783 40.000 10.16 0.00 0.00 4.06
545 546 6.406692 AGACTGTAACCTACGAATATGCAT 57.593 37.500 3.79 3.79 0.00 3.96
546 547 5.505159 CGAGACTGTAACCTACGAATATGCA 60.505 44.000 0.00 0.00 0.00 3.96
547 548 4.910456 CGAGACTGTAACCTACGAATATGC 59.090 45.833 0.00 0.00 0.00 3.14
548 549 6.296365 TCGAGACTGTAACCTACGAATATG 57.704 41.667 0.00 0.00 0.00 1.78
549 550 7.507733 AATCGAGACTGTAACCTACGAATAT 57.492 36.000 0.00 0.00 32.48 1.28
550 551 6.932356 AATCGAGACTGTAACCTACGAATA 57.068 37.500 0.00 0.00 32.48 1.75
551 552 5.831702 AATCGAGACTGTAACCTACGAAT 57.168 39.130 0.00 0.00 32.48 3.34
552 553 5.633830 AAATCGAGACTGTAACCTACGAA 57.366 39.130 0.00 0.00 32.48 3.85
553 554 6.722301 CATAAATCGAGACTGTAACCTACGA 58.278 40.000 0.00 0.00 0.00 3.43
554 555 5.398711 GCATAAATCGAGACTGTAACCTACG 59.601 44.000 0.00 0.00 0.00 3.51
555 556 5.398711 CGCATAAATCGAGACTGTAACCTAC 59.601 44.000 0.00 0.00 0.00 3.18
556 557 5.066893 ACGCATAAATCGAGACTGTAACCTA 59.933 40.000 0.00 0.00 0.00 3.08
557 558 4.142227 ACGCATAAATCGAGACTGTAACCT 60.142 41.667 0.00 0.00 0.00 3.50
558 559 4.026804 CACGCATAAATCGAGACTGTAACC 60.027 45.833 0.00 0.00 0.00 2.85
559 560 4.561606 ACACGCATAAATCGAGACTGTAAC 59.438 41.667 0.00 0.00 0.00 2.50
560 561 4.740268 ACACGCATAAATCGAGACTGTAA 58.260 39.130 0.00 0.00 0.00 2.41
561 562 4.142556 TGACACGCATAAATCGAGACTGTA 60.143 41.667 0.00 0.00 0.00 2.74
562 563 3.179830 GACACGCATAAATCGAGACTGT 58.820 45.455 0.00 0.00 0.00 3.55
563 564 3.179048 TGACACGCATAAATCGAGACTG 58.821 45.455 0.00 0.00 0.00 3.51
564 565 3.503827 TGACACGCATAAATCGAGACT 57.496 42.857 0.00 0.00 0.00 3.24
565 566 4.504461 AGAATGACACGCATAAATCGAGAC 59.496 41.667 0.00 0.00 35.78 3.36
566 567 4.682787 AGAATGACACGCATAAATCGAGA 58.317 39.130 0.00 0.00 35.78 4.04
567 568 5.395325 AAGAATGACACGCATAAATCGAG 57.605 39.130 0.00 0.00 35.78 4.04
568 569 5.808030 TGTAAGAATGACACGCATAAATCGA 59.192 36.000 0.00 0.00 35.78 3.59
569 570 5.896432 GTGTAAGAATGACACGCATAAATCG 59.104 40.000 0.00 0.00 41.41 3.34
580 581 2.028476 CGGTCCCTGTGTAAGAATGACA 60.028 50.000 0.00 0.00 0.00 3.58
581 582 2.028385 ACGGTCCCTGTGTAAGAATGAC 60.028 50.000 0.00 0.00 0.00 3.06
582 583 2.028476 CACGGTCCCTGTGTAAGAATGA 60.028 50.000 0.00 0.00 32.68 2.57
583 584 2.346803 CACGGTCCCTGTGTAAGAATG 58.653 52.381 0.00 0.00 32.68 2.67
584 585 1.338769 GCACGGTCCCTGTGTAAGAAT 60.339 52.381 5.20 0.00 39.53 2.40
585 586 0.034337 GCACGGTCCCTGTGTAAGAA 59.966 55.000 5.20 0.00 39.53 2.52
586 587 0.830444 AGCACGGTCCCTGTGTAAGA 60.830 55.000 5.20 0.00 39.53 2.10
587 588 0.892755 TAGCACGGTCCCTGTGTAAG 59.107 55.000 5.20 0.00 39.53 2.34
588 589 1.340088 TTAGCACGGTCCCTGTGTAA 58.660 50.000 5.20 1.22 39.53 2.41
589 590 1.479323 GATTAGCACGGTCCCTGTGTA 59.521 52.381 5.20 0.00 39.53 2.90
590 591 0.249398 GATTAGCACGGTCCCTGTGT 59.751 55.000 5.20 0.00 39.53 3.72
591 592 0.537188 AGATTAGCACGGTCCCTGTG 59.463 55.000 0.00 0.00 40.32 3.66
592 593 1.207329 GAAGATTAGCACGGTCCCTGT 59.793 52.381 0.00 0.00 0.00 4.00
593 594 1.482593 AGAAGATTAGCACGGTCCCTG 59.517 52.381 0.00 0.00 0.00 4.45
594 595 1.757699 GAGAAGATTAGCACGGTCCCT 59.242 52.381 0.00 0.00 0.00 4.20
595 596 1.757699 AGAGAAGATTAGCACGGTCCC 59.242 52.381 0.00 0.00 0.00 4.46
596 597 4.857509 ATAGAGAAGATTAGCACGGTCC 57.142 45.455 0.00 0.00 0.00 4.46
597 598 6.128227 ACGATATAGAGAAGATTAGCACGGTC 60.128 42.308 0.00 0.00 0.00 4.79
598 599 5.706369 ACGATATAGAGAAGATTAGCACGGT 59.294 40.000 0.00 0.00 0.00 4.83
599 600 6.184580 ACGATATAGAGAAGATTAGCACGG 57.815 41.667 0.00 0.00 0.00 4.94
600 601 7.803659 TGAAACGATATAGAGAAGATTAGCACG 59.196 37.037 0.00 0.00 0.00 5.34
601 602 9.464714 TTGAAACGATATAGAGAAGATTAGCAC 57.535 33.333 0.00 0.00 0.00 4.40
616 617 8.504005 GGACATCCGATAAAATTGAAACGATAT 58.496 33.333 0.00 0.00 0.00 1.63
617 618 7.041644 GGGACATCCGATAAAATTGAAACGATA 60.042 37.037 0.00 0.00 36.71 2.92
618 619 6.238648 GGGACATCCGATAAAATTGAAACGAT 60.239 38.462 0.00 0.00 36.71 3.73
619 620 5.065474 GGGACATCCGATAAAATTGAAACGA 59.935 40.000 0.00 0.00 36.71 3.85
620 621 5.270853 GGGACATCCGATAAAATTGAAACG 58.729 41.667 0.00 0.00 36.71 3.60
621 622 5.588240 GGGGACATCCGATAAAATTGAAAC 58.412 41.667 0.00 0.00 36.71 2.78
622 623 5.845391 GGGGACATCCGATAAAATTGAAA 57.155 39.130 0.00 0.00 36.71 2.69
635 636 1.550976 CTATAGCCTTCGGGGACATCC 59.449 57.143 0.00 0.00 37.23 3.51
636 637 2.028930 CACTATAGCCTTCGGGGACATC 60.029 54.545 0.00 0.00 37.23 3.06
637 638 1.971357 CACTATAGCCTTCGGGGACAT 59.029 52.381 0.00 0.00 37.23 3.06
638 639 1.063492 TCACTATAGCCTTCGGGGACA 60.063 52.381 0.00 0.00 37.23 4.02
639 640 1.700955 TCACTATAGCCTTCGGGGAC 58.299 55.000 0.00 0.00 37.23 4.46
640 641 2.433239 GTTTCACTATAGCCTTCGGGGA 59.567 50.000 0.00 0.00 37.23 4.81
641 642 2.802057 CGTTTCACTATAGCCTTCGGGG 60.802 54.545 0.00 0.00 35.16 5.73
642 643 2.159142 ACGTTTCACTATAGCCTTCGGG 60.159 50.000 0.00 0.00 38.37 5.14
643 644 3.160777 ACGTTTCACTATAGCCTTCGG 57.839 47.619 0.00 0.00 0.00 4.30
644 645 5.803967 ACTTAACGTTTCACTATAGCCTTCG 59.196 40.000 5.91 1.96 0.00 3.79
645 646 7.592439 AACTTAACGTTTCACTATAGCCTTC 57.408 36.000 5.91 0.00 29.63 3.46
646 647 7.974482 AAACTTAACGTTTCACTATAGCCTT 57.026 32.000 5.91 0.00 41.93 4.35
647 648 7.763071 CCTAAACTTAACGTTTCACTATAGCCT 59.237 37.037 5.91 0.00 44.39 4.58
648 649 7.547019 ACCTAAACTTAACGTTTCACTATAGCC 59.453 37.037 5.91 0.00 44.39 3.93
649 650 8.471361 ACCTAAACTTAACGTTTCACTATAGC 57.529 34.615 5.91 0.00 44.39 2.97
650 651 9.630098 TGACCTAAACTTAACGTTTCACTATAG 57.370 33.333 5.91 0.00 44.39 1.31
651 652 9.630098 CTGACCTAAACTTAACGTTTCACTATA 57.370 33.333 5.91 0.00 44.39 1.31
652 653 8.146412 ACTGACCTAAACTTAACGTTTCACTAT 58.854 33.333 5.91 0.00 44.39 2.12
653 654 7.491682 ACTGACCTAAACTTAACGTTTCACTA 58.508 34.615 5.91 0.00 44.39 2.74
654 655 6.343703 ACTGACCTAAACTTAACGTTTCACT 58.656 36.000 5.91 0.00 44.39 3.41
655 656 6.594284 ACTGACCTAAACTTAACGTTTCAC 57.406 37.500 5.91 0.00 44.39 3.18
656 657 7.491682 AGTACTGACCTAAACTTAACGTTTCA 58.508 34.615 5.91 0.00 44.39 2.69
657 658 7.936950 AGTACTGACCTAAACTTAACGTTTC 57.063 36.000 5.91 0.00 44.39 2.78
667 668 7.311364 TGTTGACAAAAGTACTGACCTAAAC 57.689 36.000 0.00 0.00 0.00 2.01
728 733 1.304052 TTCCCAATTCCCCAGCGTG 60.304 57.895 0.00 0.00 0.00 5.34
735 740 1.604147 CCGCCAACTTCCCAATTCCC 61.604 60.000 0.00 0.00 0.00 3.97
736 741 0.898326 ACCGCCAACTTCCCAATTCC 60.898 55.000 0.00 0.00 0.00 3.01
737 742 0.243636 CACCGCCAACTTCCCAATTC 59.756 55.000 0.00 0.00 0.00 2.17
771 776 4.125695 GGAGCCGGCGTTCTACGT 62.126 66.667 23.20 0.00 44.73 3.57
994 1003 2.512896 GGAGGTAGGCATGGCTGG 59.487 66.667 30.53 0.00 0.00 4.85
995 1004 2.512896 GGGAGGTAGGCATGGCTG 59.487 66.667 30.53 0.00 0.00 4.85
996 1005 2.774351 GGGGAGGTAGGCATGGCT 60.774 66.667 26.37 26.37 0.00 4.75
997 1006 4.256180 CGGGGAGGTAGGCATGGC 62.256 72.222 12.14 12.14 0.00 4.40
998 1007 3.560251 CCGGGGAGGTAGGCATGG 61.560 72.222 0.00 0.00 34.51 3.66
1503 1520 2.359404 GAGGGGACGGAGAGGTCA 59.641 66.667 0.00 0.00 38.70 4.02
1647 1664 1.891060 GCTTGGTCGACTTCACTGCG 61.891 60.000 16.46 0.00 0.00 5.18
1806 1823 0.615850 CTTCCTCCACCTCCAACTCC 59.384 60.000 0.00 0.00 0.00 3.85
1950 1967 1.343580 GCCTCCCTTACCTCCTCTTCT 60.344 57.143 0.00 0.00 0.00 2.85
1953 1970 0.417841 TTGCCTCCCTTACCTCCTCT 59.582 55.000 0.00 0.00 0.00 3.69
1995 2012 2.113433 CCTCATCACTGGCTGCAGC 61.113 63.158 30.88 30.88 41.14 5.25
2034 2051 2.115052 ATTGGGTTCAGTGGCGCA 59.885 55.556 10.83 0.00 0.00 6.09
2280 2297 0.593128 CAGGTTTACGCTGCTTGCTT 59.407 50.000 0.00 0.00 40.11 3.91
2292 2309 1.001974 ACGAGCAGCATGTCAGGTTTA 59.998 47.619 0.00 0.00 39.31 2.01
2310 2327 3.825308 CAATTGACCTCATTTGGACACG 58.175 45.455 0.00 0.00 35.03 4.49
2392 2409 3.425404 CCATAACAAACAATCTTCCGCG 58.575 45.455 0.00 0.00 0.00 6.46
2437 2454 3.301906 CAGCAGTCTTTCGAGACATAACG 59.698 47.826 9.03 0.00 41.02 3.18
2444 2461 0.681733 AAGCCAGCAGTCTTTCGAGA 59.318 50.000 0.00 0.00 0.00 4.04
2513 2530 6.391537 TGTGAACTATATGCAACGAGTAACA 58.608 36.000 0.00 0.43 0.00 2.41
2701 2718 7.279758 TCCTGCTGTTTTGGTTCAAAATAAAAG 59.720 33.333 8.72 6.73 43.66 2.27
2706 2723 4.405358 TCTCCTGCTGTTTTGGTTCAAAAT 59.595 37.500 8.72 0.00 43.66 1.82
2711 2728 2.576615 ACTCTCCTGCTGTTTTGGTTC 58.423 47.619 0.00 0.00 0.00 3.62
2716 2733 6.096846 ACATTACAAAACTCTCCTGCTGTTTT 59.903 34.615 0.00 0.00 42.37 2.43
2757 2774 8.279800 GCATCGTTGTACATTGCTTTGTATATA 58.720 33.333 0.00 0.00 34.76 0.86
2786 2803 5.577835 TCTTTTGATCATTTTTATCCGCCG 58.422 37.500 0.00 0.00 0.00 6.46
2812 2829 4.530710 AGCTACGAATCAACCTGTAACA 57.469 40.909 0.00 0.00 0.00 2.41
2884 2901 7.752239 GGAATGCATTAGTTATTCAATCCATCG 59.248 37.037 12.97 0.00 31.86 3.84
2899 2916 5.184479 CCAATATGTCCCTGGAATGCATTAG 59.816 44.000 12.97 7.09 31.38 1.73
2919 2936 6.893554 TCAGAACCAATTTCAGATCATCCAAT 59.106 34.615 0.00 0.00 36.57 3.16
3071 3088 3.005791 GCTGGCAACTTTATGTGAGGTTT 59.994 43.478 0.00 0.00 37.61 3.27
3171 3191 6.861572 GCTTAGTGAAAACAGAAACCCATTAC 59.138 38.462 0.00 0.00 0.00 1.89
3178 3198 8.579682 AAATCATGCTTAGTGAAAACAGAAAC 57.420 30.769 0.00 0.00 0.00 2.78
3209 3231 8.996988 TTACTGCATTCTAACACTTTTTAACG 57.003 30.769 0.00 0.00 0.00 3.18
3246 3268 9.213799 CTCATAAGGATAAAAATCTAGCCTCAC 57.786 37.037 0.00 0.00 36.66 3.51
3268 3290 6.881065 TGCTTCATAGAGTTACAAAAGCTCAT 59.119 34.615 0.00 0.00 38.68 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.