Multiple sequence alignment - TraesCS4D01G108400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G108400 chr4D 100.000 3734 0 0 1 3734 87726602 87730335 0.000000e+00 6896.0
1 TraesCS4D01G108400 chr4D 84.599 461 59 4 1001 1453 488254675 488254219 7.360000e-122 448.0
2 TraesCS4D01G108400 chr4D 78.165 316 58 7 388 701 499773105 499772799 1.370000e-44 191.0
3 TraesCS4D01G108400 chr4B 95.558 2274 76 10 704 2962 124045719 124047982 0.000000e+00 3616.0
4 TraesCS4D01G108400 chr4B 89.057 594 57 7 3143 3734 124155955 124156542 0.000000e+00 730.0
5 TraesCS4D01G108400 chr4B 86.957 460 50 10 344 796 124045258 124045714 3.330000e-140 508.0
6 TraesCS4D01G108400 chr4A 95.987 2168 62 10 749 2896 500431104 500433266 0.000000e+00 3498.0
7 TraesCS4D01G108400 chr4A 88.160 549 40 11 207 752 500371330 500371856 6.810000e-177 630.0
8 TraesCS4D01G108400 chr4A 93.064 173 11 1 16 187 292923493 292923665 6.190000e-63 252.0
9 TraesCS4D01G108400 chr4A 90.270 185 18 0 3 187 630878544 630878360 3.730000e-60 243.0
10 TraesCS4D01G108400 chr4A 74.737 190 40 7 1013 1200 190596815 190596998 1.110000e-10 78.7
11 TraesCS4D01G108400 chr6A 89.730 370 38 0 1316 1685 10955144 10954775 1.210000e-129 473.0
12 TraesCS4D01G108400 chr6A 82.872 397 46 8 895 1271 10981933 10981539 1.660000e-88 337.0
13 TraesCS4D01G108400 chr7D 83.333 324 41 7 388 701 603797977 603798297 1.700000e-73 287.0
14 TraesCS4D01G108400 chr7D 84.444 225 26 5 402 624 620989633 620989416 2.920000e-51 213.0
15 TraesCS4D01G108400 chr7D 96.774 31 1 0 3386 3416 29869072 29869042 7.000000e-03 52.8
16 TraesCS4D01G108400 chr6B 85.496 262 30 4 442 703 480829170 480829423 2.210000e-67 267.0
17 TraesCS4D01G108400 chr5A 92.391 184 14 0 3 186 412183725 412183908 2.860000e-66 263.0
18 TraesCS4D01G108400 chr5A 90.270 185 18 0 3 187 428156664 428156480 3.730000e-60 243.0
19 TraesCS4D01G108400 chr2A 90.270 185 18 0 3 187 753247351 753247535 3.730000e-60 243.0
20 TraesCS4D01G108400 chr2A 91.329 173 15 0 12 184 525734823 525734995 1.730000e-58 237.0
21 TraesCS4D01G108400 chr2A 83.333 90 12 2 399 487 179286648 179286561 3.090000e-11 80.5
22 TraesCS4D01G108400 chr7B 88.462 182 20 1 3 184 3329143 3328963 6.280000e-53 219.0
23 TraesCS4D01G108400 chr2D 80.984 305 33 12 390 683 586786838 586787128 6.280000e-53 219.0
24 TraesCS4D01G108400 chr2D 82.383 193 21 7 419 604 117213590 117213404 4.990000e-34 156.0
25 TraesCS4D01G108400 chr2D 78.241 216 39 7 1016 1229 373135527 373135318 8.420000e-27 132.0
26 TraesCS4D01G108400 chr2D 90.625 64 6 0 1136 1199 382670377 382670314 6.640000e-13 86.1
27 TraesCS4D01G108400 chr7A 87.283 173 17 1 14 186 202736230 202736063 3.810000e-45 193.0
28 TraesCS4D01G108400 chr3A 80.342 234 41 2 3397 3630 580614224 580614452 4.960000e-39 172.0
29 TraesCS4D01G108400 chr5D 80.100 201 23 6 1929 2113 22408783 22408584 2.340000e-27 134.0
30 TraesCS4D01G108400 chr5D 88.406 69 6 1 1157 1225 266810830 266810896 8.600000e-12 82.4
31 TraesCS4D01G108400 chr1B 82.500 120 21 0 68 187 553657740 553657859 5.100000e-19 106.0
32 TraesCS4D01G108400 chr3B 89.231 65 7 0 540 604 750005577 750005641 8.600000e-12 82.4
33 TraesCS4D01G108400 chr3D 87.692 65 8 0 540 604 562656742 562656806 4.000000e-10 76.8
34 TraesCS4D01G108400 chr5B 100.000 34 0 0 3386 3419 56822216 56822183 3.110000e-06 63.9
35 TraesCS4D01G108400 chr1D 100.000 34 0 0 3386 3419 7007682 7007715 3.110000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G108400 chr4D 87726602 87730335 3733 False 6896 6896 100.0000 1 3734 1 chr4D.!!$F1 3733
1 TraesCS4D01G108400 chr4B 124045258 124047982 2724 False 2062 3616 91.2575 344 2962 2 chr4B.!!$F2 2618
2 TraesCS4D01G108400 chr4B 124155955 124156542 587 False 730 730 89.0570 3143 3734 1 chr4B.!!$F1 591
3 TraesCS4D01G108400 chr4A 500431104 500433266 2162 False 3498 3498 95.9870 749 2896 1 chr4A.!!$F4 2147
4 TraesCS4D01G108400 chr4A 500371330 500371856 526 False 630 630 88.1600 207 752 1 chr4A.!!$F3 545

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
314 318 0.036388 TGCCGTGTGGAGGAAGAATC 60.036 55.0 0.0 0.0 37.49 2.52 F
315 319 0.250513 GCCGTGTGGAGGAAGAATCT 59.749 55.0 0.0 0.0 37.49 2.40 F
1054 1180 0.318529 CATCGTCCTCCTGCTGATCG 60.319 60.0 0.0 0.0 0.00 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2130 2259 0.318762 GATACATCACCGGCTCCCTC 59.681 60.000 0.00 0.0 0.00 4.30 R
2214 2343 1.065928 CGAGTGGTACATCCTCGGC 59.934 63.158 16.00 0.0 46.56 5.54 R
3013 3144 0.102481 ATTCGTCCCTGATCGAACGG 59.898 55.000 5.35 0.0 46.11 4.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 2.078849 CCAAAATCGGCCCAAGAAAC 57.921 50.000 0.00 0.00 0.00 2.78
33 34 1.342819 CCAAAATCGGCCCAAGAAACA 59.657 47.619 0.00 0.00 0.00 2.83
34 35 2.610232 CCAAAATCGGCCCAAGAAACAG 60.610 50.000 0.00 0.00 0.00 3.16
35 36 0.603065 AAATCGGCCCAAGAAACAGC 59.397 50.000 0.00 0.00 0.00 4.40
36 37 1.250840 AATCGGCCCAAGAAACAGCC 61.251 55.000 0.00 0.00 42.18 4.85
37 38 2.142292 ATCGGCCCAAGAAACAGCCT 62.142 55.000 0.00 0.00 43.48 4.58
38 39 1.002624 CGGCCCAAGAAACAGCCTA 60.003 57.895 0.00 0.00 43.48 3.93
39 40 1.026718 CGGCCCAAGAAACAGCCTAG 61.027 60.000 0.00 0.00 43.48 3.02
40 41 1.315981 GGCCCAAGAAACAGCCTAGC 61.316 60.000 0.00 0.00 42.34 3.42
41 42 1.648467 GCCCAAGAAACAGCCTAGCG 61.648 60.000 0.00 0.00 0.00 4.26
42 43 1.026718 CCCAAGAAACAGCCTAGCGG 61.027 60.000 0.00 0.00 0.00 5.52
43 44 1.026718 CCAAGAAACAGCCTAGCGGG 61.027 60.000 0.00 0.00 38.36 6.13
81 82 3.264897 CGTGCCTAGCGTGCCATC 61.265 66.667 0.00 0.00 0.00 3.51
82 83 3.264897 GTGCCTAGCGTGCCATCG 61.265 66.667 0.00 0.00 0.00 3.84
83 84 4.529219 TGCCTAGCGTGCCATCGG 62.529 66.667 0.00 0.00 0.00 4.18
107 108 3.966543 CCGTTGGGCTCCTGGGTT 61.967 66.667 0.00 0.00 0.00 4.11
108 109 2.672996 CGTTGGGCTCCTGGGTTG 60.673 66.667 0.00 0.00 0.00 3.77
109 110 2.520968 GTTGGGCTCCTGGGTTGT 59.479 61.111 0.00 0.00 0.00 3.32
110 111 1.903404 GTTGGGCTCCTGGGTTGTG 60.903 63.158 0.00 0.00 0.00 3.33
111 112 3.808218 TTGGGCTCCTGGGTTGTGC 62.808 63.158 0.00 0.00 0.00 4.57
112 113 3.971702 GGGCTCCTGGGTTGTGCT 61.972 66.667 0.00 0.00 0.00 4.40
113 114 2.116125 GGCTCCTGGGTTGTGCTT 59.884 61.111 0.00 0.00 0.00 3.91
114 115 2.270986 GGCTCCTGGGTTGTGCTTG 61.271 63.158 0.00 0.00 0.00 4.01
115 116 2.270986 GCTCCTGGGTTGTGCTTGG 61.271 63.158 0.00 0.00 0.00 3.61
116 117 1.604593 CTCCTGGGTTGTGCTTGGG 60.605 63.158 0.00 0.00 0.00 4.12
117 118 3.305516 CCTGGGTTGTGCTTGGGC 61.306 66.667 0.00 0.00 39.26 5.36
118 119 2.203538 CTGGGTTGTGCTTGGGCT 60.204 61.111 0.00 0.00 39.59 5.19
119 120 2.521465 TGGGTTGTGCTTGGGCTG 60.521 61.111 0.00 0.00 39.59 4.85
120 121 3.305516 GGGTTGTGCTTGGGCTGG 61.306 66.667 0.00 0.00 39.59 4.85
121 122 2.203480 GGTTGTGCTTGGGCTGGA 60.203 61.111 0.00 0.00 39.59 3.86
122 123 2.270986 GGTTGTGCTTGGGCTGGAG 61.271 63.158 0.00 0.00 39.59 3.86
123 124 2.115910 TTGTGCTTGGGCTGGAGG 59.884 61.111 0.00 0.00 39.59 4.30
124 125 3.512154 TTGTGCTTGGGCTGGAGGG 62.512 63.158 0.00 0.00 39.59 4.30
125 126 4.748144 GTGCTTGGGCTGGAGGGG 62.748 72.222 0.00 0.00 39.59 4.79
132 133 4.432741 GGCTGGAGGGGGCAGAAC 62.433 72.222 0.00 0.00 0.00 3.01
133 134 3.650950 GCTGGAGGGGGCAGAACA 61.651 66.667 0.00 0.00 0.00 3.18
134 135 2.352805 CTGGAGGGGGCAGAACAC 59.647 66.667 0.00 0.00 0.00 3.32
135 136 3.612247 CTGGAGGGGGCAGAACACG 62.612 68.421 0.00 0.00 0.00 4.49
136 137 4.410400 GGAGGGGGCAGAACACGG 62.410 72.222 0.00 0.00 0.00 4.94
137 138 4.410400 GAGGGGGCAGAACACGGG 62.410 72.222 0.00 0.00 0.00 5.28
162 163 2.816718 GGCACGGCCCGACTAATA 59.183 61.111 11.71 0.00 44.06 0.98
163 164 1.144496 GGCACGGCCCGACTAATAA 59.856 57.895 11.71 0.00 44.06 1.40
164 165 0.250166 GGCACGGCCCGACTAATAAT 60.250 55.000 11.71 0.00 44.06 1.28
165 166 1.145803 GCACGGCCCGACTAATAATC 58.854 55.000 11.71 0.00 0.00 1.75
166 167 1.415374 CACGGCCCGACTAATAATCG 58.585 55.000 11.71 0.00 39.33 3.34
167 168 1.035139 ACGGCCCGACTAATAATCGT 58.965 50.000 11.71 0.00 37.90 3.73
168 169 1.269413 ACGGCCCGACTAATAATCGTG 60.269 52.381 11.71 0.00 37.90 4.35
169 170 1.145803 GGCCCGACTAATAATCGTGC 58.854 55.000 0.00 0.00 41.46 5.34
170 171 1.145803 GCCCGACTAATAATCGTGCC 58.854 55.000 0.00 0.00 37.04 5.01
171 172 1.539496 GCCCGACTAATAATCGTGCCA 60.539 52.381 0.00 0.00 37.04 4.92
172 173 2.870435 GCCCGACTAATAATCGTGCCAT 60.870 50.000 0.00 0.00 37.04 4.40
173 174 2.736721 CCCGACTAATAATCGTGCCATG 59.263 50.000 0.00 0.00 37.90 3.66
174 175 2.736721 CCGACTAATAATCGTGCCATGG 59.263 50.000 7.63 7.63 37.90 3.66
175 176 2.157668 CGACTAATAATCGTGCCATGGC 59.842 50.000 30.54 30.54 42.35 4.40
176 177 2.143122 ACTAATAATCGTGCCATGGCG 58.857 47.619 30.87 18.27 45.51 5.69
177 178 1.464608 CTAATAATCGTGCCATGGCGG 59.535 52.381 30.87 24.45 45.51 6.13
178 179 1.172180 AATAATCGTGCCATGGCGGG 61.172 55.000 30.87 24.09 45.51 6.13
205 206 3.727419 GCTTGTTTGGCCAGCTATG 57.273 52.632 5.11 0.00 0.00 2.23
243 247 2.199652 CGGCCAACATGGTGGTGTT 61.200 57.895 30.13 0.00 42.75 3.32
260 264 1.566703 TGTTGTTTGGAGGTTGAGGGA 59.433 47.619 0.00 0.00 0.00 4.20
284 288 1.011333 CGTACCGCCAATTAGGGTTG 58.989 55.000 0.24 0.00 38.09 3.77
291 295 0.395173 CCAATTAGGGTTGGGTCGGG 60.395 60.000 0.00 0.00 43.94 5.14
293 297 0.550638 AATTAGGGTTGGGTCGGGGA 60.551 55.000 0.00 0.00 0.00 4.81
297 301 4.717313 GGTTGGGTCGGGGAGTGC 62.717 72.222 0.00 0.00 0.00 4.40
298 302 4.717313 GTTGGGTCGGGGAGTGCC 62.717 72.222 0.00 0.00 0.00 5.01
306 310 4.394712 GGGGAGTGCCGTGTGGAG 62.395 72.222 0.00 0.00 37.49 3.86
307 311 4.394712 GGGAGTGCCGTGTGGAGG 62.395 72.222 0.00 0.00 37.49 4.30
308 312 3.311110 GGAGTGCCGTGTGGAGGA 61.311 66.667 0.00 0.00 37.49 3.71
309 313 2.741092 GAGTGCCGTGTGGAGGAA 59.259 61.111 0.00 0.00 37.49 3.36
310 314 1.374758 GAGTGCCGTGTGGAGGAAG 60.375 63.158 0.00 0.00 37.49 3.46
311 315 1.816863 GAGTGCCGTGTGGAGGAAGA 61.817 60.000 0.00 0.00 37.49 2.87
312 316 1.070786 GTGCCGTGTGGAGGAAGAA 59.929 57.895 0.00 0.00 37.49 2.52
313 317 0.321653 GTGCCGTGTGGAGGAAGAAT 60.322 55.000 0.00 0.00 37.49 2.40
314 318 0.036388 TGCCGTGTGGAGGAAGAATC 60.036 55.000 0.00 0.00 37.49 2.52
315 319 0.250513 GCCGTGTGGAGGAAGAATCT 59.749 55.000 0.00 0.00 37.49 2.40
316 320 1.339151 GCCGTGTGGAGGAAGAATCTT 60.339 52.381 0.00 0.00 37.49 2.40
317 321 2.093658 GCCGTGTGGAGGAAGAATCTTA 60.094 50.000 0.00 0.00 37.49 2.10
318 322 3.432326 GCCGTGTGGAGGAAGAATCTTAT 60.432 47.826 0.00 0.00 37.49 1.73
319 323 4.202223 GCCGTGTGGAGGAAGAATCTTATA 60.202 45.833 0.00 0.00 37.49 0.98
320 324 5.511545 GCCGTGTGGAGGAAGAATCTTATAT 60.512 44.000 0.00 0.00 37.49 0.86
321 325 6.295123 GCCGTGTGGAGGAAGAATCTTATATA 60.295 42.308 0.00 0.00 37.49 0.86
322 326 7.579723 GCCGTGTGGAGGAAGAATCTTATATAT 60.580 40.741 0.00 0.00 37.49 0.86
323 327 8.967918 CCGTGTGGAGGAAGAATCTTATATATA 58.032 37.037 0.00 0.00 37.49 0.86
352 356 7.880265 ATCTAAGAAGCTTATCCCCACTATT 57.120 36.000 0.00 0.00 0.00 1.73
377 381 9.585099 TTTTATTTTATCTTAGCATGCAACCTG 57.415 29.630 21.98 5.20 0.00 4.00
385 391 1.181098 GCATGCAACCTGTCCACCTT 61.181 55.000 14.21 0.00 0.00 3.50
488 494 3.737047 GCAAGCCATCCACATCATCAAAG 60.737 47.826 0.00 0.00 0.00 2.77
494 500 4.277672 CCATCCACATCATCAAAGACATCC 59.722 45.833 0.00 0.00 0.00 3.51
696 704 1.161843 CCAACGTGCGGGAAGTTATT 58.838 50.000 0.09 0.00 0.00 1.40
711 719 7.762615 CGGGAAGTTATTTAGTATGAACAGTGA 59.237 37.037 0.00 0.00 0.00 3.41
747 855 6.934645 TCATTGGATGAAGATATAACGAACCC 59.065 38.462 0.00 0.00 36.11 4.11
753 861 8.076178 GGATGAAGATATAACGAACCCAAAATG 58.924 37.037 0.00 0.00 0.00 2.32
964 1087 3.695556 CCATCCTAACACATCACAATGCA 59.304 43.478 0.00 0.00 36.26 3.96
972 1095 3.060602 CACATCACAATGCAATGCAACA 58.939 40.909 13.45 0.00 43.62 3.33
987 1113 2.680841 TGCAACAACTTAAAGACACGCT 59.319 40.909 0.00 0.00 0.00 5.07
993 1119 1.873591 ACTTAAAGACACGCTTGCAGG 59.126 47.619 0.00 0.00 36.80 4.85
1054 1180 0.318529 CATCGTCCTCCTGCTGATCG 60.319 60.000 0.00 0.00 0.00 3.69
1254 1380 2.370445 CGGCCCCTCCAACATCTCT 61.370 63.158 0.00 0.00 34.01 3.10
1356 1485 3.063084 GTGCTCCTCGACCTCCGT 61.063 66.667 0.00 0.00 39.75 4.69
1491 1620 3.382832 CGCCTGTTCTCCCCGACT 61.383 66.667 0.00 0.00 0.00 4.18
1518 1647 0.618981 GGGTCGACCTCCCAGATTTT 59.381 55.000 32.52 0.00 44.05 1.82
2034 2163 2.114838 GCCATGGAGGAGATGCCC 59.885 66.667 18.40 0.00 41.22 5.36
2214 2343 4.742201 CTGACCGCCTCCACCGTG 62.742 72.222 0.00 0.00 0.00 4.94
2256 2385 3.352338 GACGCTGGACACCTACGGG 62.352 68.421 0.00 0.00 38.88 5.28
2910 3041 6.374053 TCAAATTTTTATGACTCGGCAGATGA 59.626 34.615 0.00 0.00 0.00 2.92
2911 3042 6.757897 AATTTTTATGACTCGGCAGATGAA 57.242 33.333 0.00 0.00 0.00 2.57
2912 3043 6.757897 ATTTTTATGACTCGGCAGATGAAA 57.242 33.333 0.00 0.00 0.00 2.69
2913 3044 6.757897 TTTTTATGACTCGGCAGATGAAAT 57.242 33.333 0.00 0.00 0.00 2.17
2914 3045 5.991328 TTTATGACTCGGCAGATGAAATC 57.009 39.130 0.00 0.00 46.04 2.17
2935 3066 1.065401 CGTTCACTTTCTTTGCTGCCA 59.935 47.619 0.00 0.00 0.00 4.92
2949 3080 1.139455 GCTGCCATTGTTTATGCCCAT 59.861 47.619 0.00 0.00 32.60 4.00
2962 3093 9.702253 TTGTTTATGCCCATAATTCTTAGGTAA 57.298 29.630 1.89 0.00 33.71 2.85
2963 3094 9.702253 TGTTTATGCCCATAATTCTTAGGTAAA 57.298 29.630 1.89 0.00 33.71 2.01
2966 3097 9.875708 TTATGCCCATAATTCTTAGGTAAATGT 57.124 29.630 0.00 0.00 0.00 2.71
2967 3098 7.581213 TGCCCATAATTCTTAGGTAAATGTG 57.419 36.000 0.00 0.00 0.00 3.21
2968 3099 7.122715 TGCCCATAATTCTTAGGTAAATGTGT 58.877 34.615 0.00 0.00 0.00 3.72
2969 3100 7.284489 TGCCCATAATTCTTAGGTAAATGTGTC 59.716 37.037 0.00 0.00 0.00 3.67
2970 3101 7.255486 GCCCATAATTCTTAGGTAAATGTGTCC 60.255 40.741 0.00 0.00 0.00 4.02
2971 3102 7.777910 CCCATAATTCTTAGGTAAATGTGTCCA 59.222 37.037 0.00 0.00 0.00 4.02
2972 3103 8.621286 CCATAATTCTTAGGTAAATGTGTCCAC 58.379 37.037 0.00 0.00 0.00 4.02
2973 3104 9.396022 CATAATTCTTAGGTAAATGTGTCCACT 57.604 33.333 0.00 0.00 0.00 4.00
2974 3105 7.923414 AATTCTTAGGTAAATGTGTCCACTC 57.077 36.000 0.00 0.00 0.00 3.51
2975 3106 5.068234 TCTTAGGTAAATGTGTCCACTCG 57.932 43.478 0.00 0.00 0.00 4.18
2976 3107 2.762535 AGGTAAATGTGTCCACTCGG 57.237 50.000 0.00 0.00 0.00 4.63
2977 3108 1.084289 GGTAAATGTGTCCACTCGGC 58.916 55.000 0.00 0.00 0.00 5.54
2978 3109 1.084289 GTAAATGTGTCCACTCGGCC 58.916 55.000 0.00 0.00 0.00 6.13
2979 3110 0.390603 TAAATGTGTCCACTCGGCCG 60.391 55.000 22.12 22.12 0.00 6.13
2980 3111 2.107041 AAATGTGTCCACTCGGCCGA 62.107 55.000 29.03 29.03 0.00 5.54
2981 3112 2.781595 AATGTGTCCACTCGGCCGAC 62.782 60.000 27.28 15.95 0.00 4.79
2982 3113 4.736896 GTGTCCACTCGGCCGACC 62.737 72.222 27.28 10.29 0.00 4.79
2993 3124 4.131088 GCCGACCGGTCTGTCCTC 62.131 72.222 30.92 9.15 37.65 3.71
2994 3125 3.812019 CCGACCGGTCTGTCCTCG 61.812 72.222 30.92 17.07 34.84 4.63
2995 3126 2.745100 CGACCGGTCTGTCCTCGA 60.745 66.667 30.92 0.00 36.42 4.04
2996 3127 2.751913 CGACCGGTCTGTCCTCGAG 61.752 68.421 30.92 5.13 36.42 4.04
2997 3128 2.361357 ACCGGTCTGTCCTCGAGG 60.361 66.667 26.32 26.32 0.00 4.63
2998 3129 3.827898 CCGGTCTGTCCTCGAGGC 61.828 72.222 27.39 20.99 34.44 4.70
2999 3130 3.827898 CGGTCTGTCCTCGAGGCC 61.828 72.222 27.39 17.30 34.44 5.19
3000 3131 3.827898 GGTCTGTCCTCGAGGCCG 61.828 72.222 27.39 17.12 34.44 6.13
3001 3132 3.827898 GTCTGTCCTCGAGGCCGG 61.828 72.222 27.39 21.39 36.24 6.13
3002 3133 4.361971 TCTGTCCTCGAGGCCGGT 62.362 66.667 27.39 0.00 36.24 5.28
3003 3134 3.827898 CTGTCCTCGAGGCCGGTC 61.828 72.222 27.39 13.70 36.24 4.79
3022 3153 2.956964 CTCGCTGCCCGTTCGATC 60.957 66.667 0.00 0.00 38.35 3.69
3023 3154 3.699955 CTCGCTGCCCGTTCGATCA 62.700 63.158 0.00 0.00 38.35 2.92
3024 3155 3.257561 CGCTGCCCGTTCGATCAG 61.258 66.667 0.00 2.14 0.00 2.90
3025 3156 2.892425 GCTGCCCGTTCGATCAGG 60.892 66.667 12.45 0.00 0.00 3.86
3030 3161 3.193757 CCGTTCGATCAGGGACGA 58.806 61.111 6.64 0.00 37.69 4.20
3031 3162 1.509463 CCGTTCGATCAGGGACGAA 59.491 57.895 6.64 0.00 44.26 3.85
3032 3163 0.102481 CCGTTCGATCAGGGACGAAT 59.898 55.000 6.64 0.00 46.97 3.34
3033 3164 1.470979 CCGTTCGATCAGGGACGAATT 60.471 52.381 6.64 0.00 46.97 2.17
3034 3165 1.588404 CGTTCGATCAGGGACGAATTG 59.412 52.381 0.00 0.00 46.97 2.32
3035 3166 2.618053 GTTCGATCAGGGACGAATTGT 58.382 47.619 0.00 0.00 46.97 2.71
3036 3167 3.732774 CGTTCGATCAGGGACGAATTGTA 60.733 47.826 0.00 0.00 46.97 2.41
3037 3168 3.431922 TCGATCAGGGACGAATTGTAC 57.568 47.619 0.00 0.00 35.62 2.90
3038 3169 2.117137 CGATCAGGGACGAATTGTACG 58.883 52.381 0.00 0.00 29.07 3.67
3039 3170 2.479049 CGATCAGGGACGAATTGTACGT 60.479 50.000 0.00 0.00 46.58 3.57
3049 3180 2.470140 CGAATTGTACGTCTCACAACGC 60.470 50.000 4.58 0.32 46.40 4.84
3050 3181 2.143008 ATTGTACGTCTCACAACGCA 57.857 45.000 4.58 0.00 46.40 5.24
3051 3182 1.202203 TTGTACGTCTCACAACGCAC 58.798 50.000 0.00 0.00 46.40 5.34
3052 3183 0.100861 TGTACGTCTCACAACGCACA 59.899 50.000 0.00 0.00 44.32 4.57
3053 3184 0.776451 GTACGTCTCACAACGCACAG 59.224 55.000 0.00 0.00 46.40 3.66
3054 3185 0.318360 TACGTCTCACAACGCACAGG 60.318 55.000 0.00 0.00 46.40 4.00
3055 3186 1.299850 CGTCTCACAACGCACAGGA 60.300 57.895 0.00 0.00 35.64 3.86
3056 3187 1.548973 CGTCTCACAACGCACAGGAC 61.549 60.000 0.00 0.00 35.64 3.85
3057 3188 1.299850 TCTCACAACGCACAGGACG 60.300 57.895 0.00 0.00 0.00 4.79
3058 3189 2.943345 CTCACAACGCACAGGACGC 61.943 63.158 0.00 0.00 0.00 5.19
3059 3190 4.012895 CACAACGCACAGGACGCC 62.013 66.667 0.00 0.00 0.00 5.68
3060 3191 4.235762 ACAACGCACAGGACGCCT 62.236 61.111 0.00 0.00 0.00 5.52
3061 3192 2.972505 CAACGCACAGGACGCCTT 60.973 61.111 0.00 0.00 0.00 4.35
3062 3193 2.665185 AACGCACAGGACGCCTTC 60.665 61.111 0.00 0.00 0.00 3.46
3063 3194 3.165160 AACGCACAGGACGCCTTCT 62.165 57.895 0.00 0.00 0.00 2.85
3064 3195 2.811317 CGCACAGGACGCCTTCTC 60.811 66.667 0.00 0.00 0.00 2.87
3065 3196 2.435059 GCACAGGACGCCTTCTCC 60.435 66.667 0.00 0.00 0.00 3.71
3066 3197 3.059982 CACAGGACGCCTTCTCCA 58.940 61.111 0.00 0.00 0.00 3.86
3067 3198 1.371183 CACAGGACGCCTTCTCCAA 59.629 57.895 0.00 0.00 0.00 3.53
3068 3199 0.951040 CACAGGACGCCTTCTCCAAC 60.951 60.000 0.00 0.00 0.00 3.77
3069 3200 1.738099 CAGGACGCCTTCTCCAACG 60.738 63.158 0.00 0.00 0.00 4.10
3070 3201 3.119096 GGACGCCTTCTCCAACGC 61.119 66.667 0.00 0.00 0.00 4.84
3071 3202 3.119096 GACGCCTTCTCCAACGCC 61.119 66.667 0.00 0.00 0.00 5.68
3072 3203 3.591254 GACGCCTTCTCCAACGCCT 62.591 63.158 0.00 0.00 0.00 5.52
3073 3204 2.815647 CGCCTTCTCCAACGCCTC 60.816 66.667 0.00 0.00 0.00 4.70
3074 3205 2.347490 GCCTTCTCCAACGCCTCA 59.653 61.111 0.00 0.00 0.00 3.86
3075 3206 1.078143 GCCTTCTCCAACGCCTCAT 60.078 57.895 0.00 0.00 0.00 2.90
3076 3207 1.092345 GCCTTCTCCAACGCCTCATC 61.092 60.000 0.00 0.00 0.00 2.92
3077 3208 0.539051 CCTTCTCCAACGCCTCATCT 59.461 55.000 0.00 0.00 0.00 2.90
3078 3209 1.472376 CCTTCTCCAACGCCTCATCTC 60.472 57.143 0.00 0.00 0.00 2.75
3079 3210 1.480137 CTTCTCCAACGCCTCATCTCT 59.520 52.381 0.00 0.00 0.00 3.10
3080 3211 1.107114 TCTCCAACGCCTCATCTCTC 58.893 55.000 0.00 0.00 0.00 3.20
3081 3212 0.103937 CTCCAACGCCTCATCTCTCC 59.896 60.000 0.00 0.00 0.00 3.71
3082 3213 1.227089 CCAACGCCTCATCTCTCCG 60.227 63.158 0.00 0.00 0.00 4.63
3083 3214 1.880340 CAACGCCTCATCTCTCCGC 60.880 63.158 0.00 0.00 0.00 5.54
3084 3215 2.351244 AACGCCTCATCTCTCCGCA 61.351 57.895 0.00 0.00 0.00 5.69
3085 3216 2.279120 CGCCTCATCTCTCCGCAC 60.279 66.667 0.00 0.00 0.00 5.34
3086 3217 2.279120 GCCTCATCTCTCCGCACG 60.279 66.667 0.00 0.00 0.00 5.34
3087 3218 2.279120 CCTCATCTCTCCGCACGC 60.279 66.667 0.00 0.00 0.00 5.34
3088 3219 2.279120 CTCATCTCTCCGCACGCC 60.279 66.667 0.00 0.00 0.00 5.68
3089 3220 4.193334 TCATCTCTCCGCACGCCG 62.193 66.667 0.00 0.00 0.00 6.46
3099 3230 3.188786 GCACGCCGGCTAGTTCAG 61.189 66.667 26.68 9.51 0.00 3.02
3112 3243 1.661341 AGTTCAGCATCGCATCTTCC 58.339 50.000 0.00 0.00 0.00 3.46
3113 3244 0.659957 GTTCAGCATCGCATCTTCCC 59.340 55.000 0.00 0.00 0.00 3.97
3114 3245 0.543277 TTCAGCATCGCATCTTCCCT 59.457 50.000 0.00 0.00 0.00 4.20
3115 3246 0.543277 TCAGCATCGCATCTTCCCTT 59.457 50.000 0.00 0.00 0.00 3.95
3116 3247 0.942962 CAGCATCGCATCTTCCCTTC 59.057 55.000 0.00 0.00 0.00 3.46
3117 3248 0.835941 AGCATCGCATCTTCCCTTCT 59.164 50.000 0.00 0.00 0.00 2.85
3118 3249 2.042464 AGCATCGCATCTTCCCTTCTA 58.958 47.619 0.00 0.00 0.00 2.10
3119 3250 2.139118 GCATCGCATCTTCCCTTCTAC 58.861 52.381 0.00 0.00 0.00 2.59
3120 3251 2.398498 CATCGCATCTTCCCTTCTACG 58.602 52.381 0.00 0.00 0.00 3.51
3121 3252 1.471119 TCGCATCTTCCCTTCTACGT 58.529 50.000 0.00 0.00 0.00 3.57
3122 3253 1.822990 TCGCATCTTCCCTTCTACGTT 59.177 47.619 0.00 0.00 0.00 3.99
3123 3254 2.232941 TCGCATCTTCCCTTCTACGTTT 59.767 45.455 0.00 0.00 0.00 3.60
3124 3255 3.000727 CGCATCTTCCCTTCTACGTTTT 58.999 45.455 0.00 0.00 0.00 2.43
3125 3256 3.181520 CGCATCTTCCCTTCTACGTTTTG 60.182 47.826 0.00 0.00 0.00 2.44
3126 3257 3.751698 GCATCTTCCCTTCTACGTTTTGT 59.248 43.478 0.00 0.00 0.00 2.83
3127 3258 4.215613 GCATCTTCCCTTCTACGTTTTGTT 59.784 41.667 0.00 0.00 0.00 2.83
3128 3259 5.278315 GCATCTTCCCTTCTACGTTTTGTTT 60.278 40.000 0.00 0.00 0.00 2.83
3129 3260 5.996669 TCTTCCCTTCTACGTTTTGTTTC 57.003 39.130 0.00 0.00 0.00 2.78
3130 3261 5.677567 TCTTCCCTTCTACGTTTTGTTTCT 58.322 37.500 0.00 0.00 0.00 2.52
3131 3262 6.117488 TCTTCCCTTCTACGTTTTGTTTCTT 58.883 36.000 0.00 0.00 0.00 2.52
3132 3263 5.996669 TCCCTTCTACGTTTTGTTTCTTC 57.003 39.130 0.00 0.00 0.00 2.87
3133 3264 5.677567 TCCCTTCTACGTTTTGTTTCTTCT 58.322 37.500 0.00 0.00 0.00 2.85
3134 3265 5.756833 TCCCTTCTACGTTTTGTTTCTTCTC 59.243 40.000 0.00 0.00 0.00 2.87
3135 3266 5.758784 CCCTTCTACGTTTTGTTTCTTCTCT 59.241 40.000 0.00 0.00 0.00 3.10
3136 3267 6.073711 CCCTTCTACGTTTTGTTTCTTCTCTC 60.074 42.308 0.00 0.00 0.00 3.20
3137 3268 6.073711 CCTTCTACGTTTTGTTTCTTCTCTCC 60.074 42.308 0.00 0.00 0.00 3.71
3138 3269 4.980434 TCTACGTTTTGTTTCTTCTCTCCG 59.020 41.667 0.00 0.00 0.00 4.63
3139 3270 2.287103 ACGTTTTGTTTCTTCTCTCCGC 59.713 45.455 0.00 0.00 0.00 5.54
3140 3271 2.286833 CGTTTTGTTTCTTCTCTCCGCA 59.713 45.455 0.00 0.00 0.00 5.69
3141 3272 3.618698 GTTTTGTTTCTTCTCTCCGCAC 58.381 45.455 0.00 0.00 0.00 5.34
3162 3293 1.616921 CATGCCAACCCATCCCTCT 59.383 57.895 0.00 0.00 0.00 3.69
3164 3295 1.649271 ATGCCAACCCATCCCTCTCC 61.649 60.000 0.00 0.00 0.00 3.71
3165 3296 3.061905 GCCAACCCATCCCTCTCCC 62.062 68.421 0.00 0.00 0.00 4.30
3169 3301 0.845102 AACCCATCCCTCTCCCGTTT 60.845 55.000 0.00 0.00 0.00 3.60
3177 3309 3.243053 TCTCCCGTTTCCCGCCAA 61.243 61.111 0.00 0.00 34.38 4.52
3193 3325 2.203337 AAGGCCAAAGCTGCGACA 60.203 55.556 5.01 0.00 39.73 4.35
3196 3328 4.410743 GCCAAAGCTGCGACAGGC 62.411 66.667 11.38 11.38 43.96 4.85
3217 3349 0.315251 TCAGCCGACTCTGTGAACAG 59.685 55.000 3.98 3.98 45.08 3.16
3219 3351 2.375766 GCCGACTCTGTGAACAGCG 61.376 63.158 5.55 2.20 43.46 5.18
3236 3368 2.183555 GAGTCCCAACCTACGCGG 59.816 66.667 12.47 0.00 39.35 6.46
3294 3426 7.441760 TCATGCTAAAAGAACAAATGCAATTGT 59.558 29.630 14.42 14.42 45.12 2.71
3295 3427 6.946165 TGCTAAAAGAACAAATGCAATTGTG 58.054 32.000 20.41 7.59 42.49 3.33
3345 3477 2.106566 ACAGCCAACATCCACAAACAA 58.893 42.857 0.00 0.00 0.00 2.83
3346 3478 2.101249 ACAGCCAACATCCACAAACAAG 59.899 45.455 0.00 0.00 0.00 3.16
3366 3498 8.504812 AACAAGCACCAAACAAATTTTAATCT 57.495 26.923 0.00 0.00 0.00 2.40
3407 3539 3.185594 CCACAAAGCTTGCATCAACATTG 59.814 43.478 0.00 0.00 0.00 2.82
3436 3568 9.307121 CTTAATATAATTCATAGACGGAGGCTG 57.693 37.037 0.00 0.00 0.00 4.85
3447 3579 2.431683 GAGGCTGCCACACCTTGA 59.568 61.111 22.65 0.00 36.05 3.02
3455 3587 3.201290 CTGCCACACCTTGATGATACTC 58.799 50.000 0.00 0.00 0.00 2.59
3463 3595 3.640967 ACCTTGATGATACTCAGAGGAGC 59.359 47.826 1.53 0.00 45.42 4.70
3469 3601 4.662468 TGATACTCAGAGGAGCATTGAC 57.338 45.455 0.00 0.00 45.42 3.18
3497 3629 2.836360 CCGGCCGCTACTCCCTTA 60.836 66.667 22.85 0.00 0.00 2.69
3499 3631 2.125961 CGGCCGCTACTCCCTTACT 61.126 63.158 14.67 0.00 0.00 2.24
3500 3632 1.673808 CGGCCGCTACTCCCTTACTT 61.674 60.000 14.67 0.00 0.00 2.24
3505 3637 3.867216 GCCGCTACTCCCTTACTTTTGAA 60.867 47.826 0.00 0.00 0.00 2.69
3540 3672 2.483106 CTGCATTGGACTCACACAAGAG 59.517 50.000 0.00 0.00 41.44 2.85
3549 3681 2.034812 ACTCACACAAGAGGAGAACGAC 59.965 50.000 0.00 0.00 39.97 4.34
3553 3685 0.597072 ACAAGAGGAGAACGACGACC 59.403 55.000 0.00 0.00 0.00 4.79
3563 3695 4.450080 GGAGAACGACGACCAGTAATTTTT 59.550 41.667 0.00 0.00 0.00 1.94
3565 3697 4.149396 AGAACGACGACCAGTAATTTTTCG 59.851 41.667 0.00 0.00 35.80 3.46
3580 3712 5.768333 ATTTTTCGCAAAATTAGCAGAGC 57.232 34.783 0.00 0.00 39.19 4.09
3600 3732 0.397816 CCGAGACAGATTCCTCCCCT 60.398 60.000 0.00 0.00 0.00 4.79
3604 3736 3.643792 CGAGACAGATTCCTCCCCTTTAT 59.356 47.826 0.00 0.00 0.00 1.40
3610 3742 6.745857 ACAGATTCCTCCCCTTTATCAAAAT 58.254 36.000 0.00 0.00 0.00 1.82
3634 3766 9.730705 AATTCAGATCATTTCTTAAGTGTCAGA 57.269 29.630 1.63 0.00 29.93 3.27
3635 3767 9.902684 ATTCAGATCATTTCTTAAGTGTCAGAT 57.097 29.630 1.63 1.73 29.93 2.90
3639 3771 9.956640 AGATCATTTCTTAAGTGTCAGATTCTT 57.043 29.630 1.63 0.00 0.00 2.52
3687 3820 8.386606 CACACAACTAGAGAGCTTAATTGATTC 58.613 37.037 0.00 0.00 0.00 2.52
3689 3822 8.602328 CACAACTAGAGAGCTTAATTGATTCAG 58.398 37.037 0.00 0.00 0.00 3.02
3699 3832 7.424001 AGCTTAATTGATTCAGCAAGATAAGC 58.576 34.615 20.04 20.04 45.51 3.09
3708 3841 4.592942 TCAGCAAGATAAGCAACCAATCT 58.407 39.130 0.00 0.00 0.00 2.40
3715 3848 0.704076 AAGCAACCAATCTGCCCCTA 59.296 50.000 0.00 0.00 40.86 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 1.342819 TGTTTCTTGGGCCGATTTTGG 59.657 47.619 0.00 0.00 0.00 3.28
14 15 2.676076 CTGTTTCTTGGGCCGATTTTG 58.324 47.619 0.00 0.00 0.00 2.44
15 16 1.000843 GCTGTTTCTTGGGCCGATTTT 59.999 47.619 0.00 0.00 0.00 1.82
16 17 0.603065 GCTGTTTCTTGGGCCGATTT 59.397 50.000 0.00 0.00 0.00 2.17
17 18 1.250840 GGCTGTTTCTTGGGCCGATT 61.251 55.000 0.00 0.00 35.08 3.34
18 19 1.678970 GGCTGTTTCTTGGGCCGAT 60.679 57.895 0.00 0.00 35.08 4.18
19 20 2.282180 GGCTGTTTCTTGGGCCGA 60.282 61.111 0.00 0.00 35.08 5.54
21 22 1.315981 GCTAGGCTGTTTCTTGGGCC 61.316 60.000 0.00 0.00 44.38 5.80
22 23 1.648467 CGCTAGGCTGTTTCTTGGGC 61.648 60.000 0.00 0.00 0.00 5.36
23 24 1.026718 CCGCTAGGCTGTTTCTTGGG 61.027 60.000 0.00 0.00 0.00 4.12
24 25 1.026718 CCCGCTAGGCTGTTTCTTGG 61.027 60.000 0.00 0.00 35.76 3.61
25 26 2.471255 CCCGCTAGGCTGTTTCTTG 58.529 57.895 0.00 0.00 35.76 3.02
90 91 3.966543 AACCCAGGAGCCCAACGG 61.967 66.667 0.00 0.00 0.00 4.44
91 92 2.672996 CAACCCAGGAGCCCAACG 60.673 66.667 0.00 0.00 0.00 4.10
92 93 1.903404 CACAACCCAGGAGCCCAAC 60.903 63.158 0.00 0.00 0.00 3.77
93 94 2.520458 CACAACCCAGGAGCCCAA 59.480 61.111 0.00 0.00 0.00 4.12
94 95 4.284550 GCACAACCCAGGAGCCCA 62.285 66.667 0.00 0.00 0.00 5.36
95 96 3.513750 AAGCACAACCCAGGAGCCC 62.514 63.158 0.00 0.00 0.00 5.19
96 97 2.116125 AAGCACAACCCAGGAGCC 59.884 61.111 0.00 0.00 0.00 4.70
97 98 2.270986 CCAAGCACAACCCAGGAGC 61.271 63.158 0.00 0.00 0.00 4.70
98 99 1.604593 CCCAAGCACAACCCAGGAG 60.605 63.158 0.00 0.00 0.00 3.69
99 100 2.520458 CCCAAGCACAACCCAGGA 59.480 61.111 0.00 0.00 0.00 3.86
100 101 3.305516 GCCCAAGCACAACCCAGG 61.306 66.667 0.00 0.00 39.53 4.45
101 102 2.203538 AGCCCAAGCACAACCCAG 60.204 61.111 0.00 0.00 43.56 4.45
102 103 2.521465 CAGCCCAAGCACAACCCA 60.521 61.111 0.00 0.00 43.56 4.51
103 104 3.305516 CCAGCCCAAGCACAACCC 61.306 66.667 0.00 0.00 43.56 4.11
104 105 2.203480 TCCAGCCCAAGCACAACC 60.203 61.111 0.00 0.00 43.56 3.77
105 106 2.270986 CCTCCAGCCCAAGCACAAC 61.271 63.158 0.00 0.00 43.56 3.32
106 107 2.115910 CCTCCAGCCCAAGCACAA 59.884 61.111 0.00 0.00 43.56 3.33
107 108 3.970410 CCCTCCAGCCCAAGCACA 61.970 66.667 0.00 0.00 43.56 4.57
108 109 4.748144 CCCCTCCAGCCCAAGCAC 62.748 72.222 0.00 0.00 43.56 4.40
115 116 4.432741 GTTCTGCCCCCTCCAGCC 62.433 72.222 0.00 0.00 0.00 4.85
116 117 3.650950 TGTTCTGCCCCCTCCAGC 61.651 66.667 0.00 0.00 0.00 4.85
117 118 2.352805 GTGTTCTGCCCCCTCCAG 59.647 66.667 0.00 0.00 0.00 3.86
118 119 3.636231 CGTGTTCTGCCCCCTCCA 61.636 66.667 0.00 0.00 0.00 3.86
119 120 4.410400 CCGTGTTCTGCCCCCTCC 62.410 72.222 0.00 0.00 0.00 4.30
120 121 4.410400 CCCGTGTTCTGCCCCCTC 62.410 72.222 0.00 0.00 0.00 4.30
146 147 1.145803 GATTATTAGTCGGGCCGTGC 58.854 55.000 27.32 19.49 0.00 5.34
147 148 1.269413 ACGATTATTAGTCGGGCCGTG 60.269 52.381 27.32 0.00 43.06 4.94
148 149 1.035139 ACGATTATTAGTCGGGCCGT 58.965 50.000 27.32 10.46 43.06 5.68
149 150 1.415374 CACGATTATTAGTCGGGCCG 58.585 55.000 22.51 22.51 43.06 6.13
152 153 2.519377 TGGCACGATTATTAGTCGGG 57.481 50.000 12.41 9.61 44.93 5.14
153 154 2.736721 CCATGGCACGATTATTAGTCGG 59.263 50.000 12.41 3.88 43.06 4.79
154 155 2.157668 GCCATGGCACGATTATTAGTCG 59.842 50.000 32.08 7.01 44.26 4.18
155 156 2.157668 CGCCATGGCACGATTATTAGTC 59.842 50.000 34.93 1.76 42.06 2.59
156 157 2.143122 CGCCATGGCACGATTATTAGT 58.857 47.619 34.93 0.00 42.06 2.24
157 158 1.464608 CCGCCATGGCACGATTATTAG 59.535 52.381 34.93 15.02 42.06 1.73
158 159 1.518325 CCGCCATGGCACGATTATTA 58.482 50.000 34.93 0.00 42.06 0.98
159 160 1.172180 CCCGCCATGGCACGATTATT 61.172 55.000 34.93 0.00 42.06 1.40
160 161 1.600636 CCCGCCATGGCACGATTAT 60.601 57.895 34.93 0.00 42.06 1.28
161 162 2.203139 CCCGCCATGGCACGATTA 60.203 61.111 34.93 0.00 42.06 1.75
187 188 0.459063 GCATAGCTGGCCAAACAAGC 60.459 55.000 7.01 6.31 0.00 4.01
188 189 1.180029 AGCATAGCTGGCCAAACAAG 58.820 50.000 7.01 0.00 37.57 3.16
189 190 1.631405 AAGCATAGCTGGCCAAACAA 58.369 45.000 7.01 0.00 39.62 2.83
190 191 2.026356 TCTAAGCATAGCTGGCCAAACA 60.026 45.455 7.01 0.00 39.62 2.83
191 192 2.615912 CTCTAAGCATAGCTGGCCAAAC 59.384 50.000 7.01 1.16 39.62 2.93
192 193 2.421952 CCTCTAAGCATAGCTGGCCAAA 60.422 50.000 7.01 0.00 39.62 3.28
193 194 1.141657 CCTCTAAGCATAGCTGGCCAA 59.858 52.381 7.01 0.00 39.62 4.52
194 195 0.761187 CCTCTAAGCATAGCTGGCCA 59.239 55.000 4.71 4.71 39.62 5.36
195 196 0.036022 CCCTCTAAGCATAGCTGGCC 59.964 60.000 8.40 0.00 39.62 5.36
196 197 1.051812 TCCCTCTAAGCATAGCTGGC 58.948 55.000 0.00 0.00 39.62 4.85
197 198 2.902486 TCATCCCTCTAAGCATAGCTGG 59.098 50.000 0.00 0.00 39.62 4.85
198 199 4.677514 CGATCATCCCTCTAAGCATAGCTG 60.678 50.000 0.00 0.00 39.62 4.24
199 200 3.446873 CGATCATCCCTCTAAGCATAGCT 59.553 47.826 0.00 0.00 42.56 3.32
200 201 3.779759 CGATCATCCCTCTAAGCATAGC 58.220 50.000 0.00 0.00 0.00 2.97
201 202 3.733380 CGCGATCATCCCTCTAAGCATAG 60.733 52.174 0.00 0.00 0.00 2.23
202 203 2.164422 CGCGATCATCCCTCTAAGCATA 59.836 50.000 0.00 0.00 0.00 3.14
203 204 1.067283 CGCGATCATCCCTCTAAGCAT 60.067 52.381 0.00 0.00 0.00 3.79
204 205 0.315251 CGCGATCATCCCTCTAAGCA 59.685 55.000 0.00 0.00 0.00 3.91
205 206 0.389166 CCGCGATCATCCCTCTAAGC 60.389 60.000 8.23 0.00 0.00 3.09
243 247 0.107831 CGTCCCTCAACCTCCAAACA 59.892 55.000 0.00 0.00 0.00 2.83
245 249 0.685097 CTCGTCCCTCAACCTCCAAA 59.315 55.000 0.00 0.00 0.00 3.28
273 277 0.395173 CCCCGACCCAACCCTAATTG 60.395 60.000 0.00 0.00 0.00 2.32
275 279 0.986550 CTCCCCGACCCAACCCTAAT 60.987 60.000 0.00 0.00 0.00 1.73
291 295 2.788191 CTTCCTCCACACGGCACTCC 62.788 65.000 0.00 0.00 0.00 3.85
293 297 1.407656 TTCTTCCTCCACACGGCACT 61.408 55.000 0.00 0.00 0.00 4.40
297 301 2.770164 AAGATTCTTCCTCCACACGG 57.230 50.000 0.00 0.00 0.00 4.94
321 325 9.393786 TGGGGATAAGCTTCTTAGATACTTTAT 57.606 33.333 0.00 0.00 0.00 1.40
322 326 8.648693 GTGGGGATAAGCTTCTTAGATACTTTA 58.351 37.037 0.00 0.00 0.00 1.85
323 327 7.348537 AGTGGGGATAAGCTTCTTAGATACTTT 59.651 37.037 0.00 0.00 0.00 2.66
324 328 6.847036 AGTGGGGATAAGCTTCTTAGATACTT 59.153 38.462 0.00 3.39 0.00 2.24
325 329 6.386284 AGTGGGGATAAGCTTCTTAGATACT 58.614 40.000 0.00 0.00 0.00 2.12
326 330 6.673839 AGTGGGGATAAGCTTCTTAGATAC 57.326 41.667 0.00 0.00 0.00 2.24
329 333 7.691993 AAATAGTGGGGATAAGCTTCTTAGA 57.308 36.000 0.00 0.00 0.00 2.10
352 356 8.748412 ACAGGTTGCATGCTAAGATAAAATAAA 58.252 29.630 20.33 0.00 0.00 1.40
356 360 5.125417 GGACAGGTTGCATGCTAAGATAAAA 59.875 40.000 20.33 0.00 0.00 1.52
366 370 1.181098 AAGGTGGACAGGTTGCATGC 61.181 55.000 11.82 11.82 0.00 4.06
377 381 6.092807 GTCATGAAAAGTGAGATAAGGTGGAC 59.907 42.308 0.00 0.00 0.00 4.02
385 391 5.939296 TGTGCATGTCATGAAAAGTGAGATA 59.061 36.000 17.24 0.00 29.56 1.98
488 494 2.290896 TGATGTGGAGGGTTTGGATGTC 60.291 50.000 0.00 0.00 0.00 3.06
494 500 5.410355 AAATCAATGATGTGGAGGGTTTG 57.590 39.130 0.00 0.00 0.00 2.93
722 830 6.934645 GGGTTCGTTATATCTTCATCCAATGA 59.065 38.462 0.00 0.00 37.55 2.57
753 861 8.843262 AGGTACCTTGAAACAAATGTAAGTTAC 58.157 33.333 9.21 6.06 0.00 2.50
796 911 1.339151 CCTAAGGTCCTTGCTCGCTTT 60.339 52.381 14.84 0.00 0.00 3.51
798 913 0.905337 ACCTAAGGTCCTTGCTCGCT 60.905 55.000 14.84 0.00 0.00 4.93
964 1087 4.041723 GCGTGTCTTTAAGTTGTTGCATT 58.958 39.130 0.00 0.00 0.00 3.56
972 1095 2.290641 CCTGCAAGCGTGTCTTTAAGTT 59.709 45.455 0.59 0.00 31.27 2.66
1005 1131 4.394712 AAGGGTCTCGCCGGCTTG 62.395 66.667 26.68 16.93 38.44 4.01
1194 1320 1.227292 GACGAAATCCTCCGGGAGC 60.227 63.158 18.91 3.57 45.86 4.70
1206 1332 1.667756 CGGTCGAACATGAGGACGAAA 60.668 52.381 0.00 0.00 36.57 3.46
1254 1380 2.754658 GAAGCCGGGTCGAGGAGA 60.755 66.667 6.62 0.00 0.00 3.71
1356 1485 3.430862 GGATGCAGCGCGTTGGAA 61.431 61.111 22.11 0.00 0.00 3.53
1512 1641 3.499737 CGCGCGGCCAGAAAATCT 61.500 61.111 24.84 0.00 0.00 2.40
1797 1926 3.467226 GGGATCGTGGGAAGGCGA 61.467 66.667 0.00 0.00 41.50 5.54
2034 2163 4.802051 CCCATCACCCGTGGCAGG 62.802 72.222 0.00 0.00 35.35 4.85
2130 2259 0.318762 GATACATCACCGGCTCCCTC 59.681 60.000 0.00 0.00 0.00 4.30
2131 2260 1.122019 GGATACATCACCGGCTCCCT 61.122 60.000 0.00 0.00 0.00 4.20
2214 2343 1.065928 CGAGTGGTACATCCTCGGC 59.934 63.158 16.00 0.00 46.56 5.54
2431 2560 4.657824 CACCTCGAACCGCACCGT 62.658 66.667 0.00 0.00 0.00 4.83
2526 2655 2.750815 GTTCATCCCGAACGAGTGG 58.249 57.895 0.00 0.00 44.41 4.00
2793 2922 2.264005 TCCCTAGCTCGTCTCATCTC 57.736 55.000 0.00 0.00 0.00 2.75
2910 3041 4.610945 CAGCAAAGAAAGTGAACGGATTT 58.389 39.130 0.00 0.00 0.00 2.17
2911 3042 3.550842 GCAGCAAAGAAAGTGAACGGATT 60.551 43.478 0.00 0.00 0.00 3.01
2912 3043 2.030805 GCAGCAAAGAAAGTGAACGGAT 60.031 45.455 0.00 0.00 0.00 4.18
2913 3044 1.333619 GCAGCAAAGAAAGTGAACGGA 59.666 47.619 0.00 0.00 0.00 4.69
2914 3045 1.600413 GGCAGCAAAGAAAGTGAACGG 60.600 52.381 0.00 0.00 0.00 4.44
2915 3046 1.065401 TGGCAGCAAAGAAAGTGAACG 59.935 47.619 0.00 0.00 0.00 3.95
2916 3047 2.869233 TGGCAGCAAAGAAAGTGAAC 57.131 45.000 0.00 0.00 0.00 3.18
2920 3051 3.825143 AACAATGGCAGCAAAGAAAGT 57.175 38.095 0.00 0.00 0.00 2.66
2921 3052 5.390145 GCATAAACAATGGCAGCAAAGAAAG 60.390 40.000 0.00 0.00 35.99 2.62
2922 3053 4.451774 GCATAAACAATGGCAGCAAAGAAA 59.548 37.500 0.00 0.00 35.99 2.52
2935 3066 8.782137 ACCTAAGAATTATGGGCATAAACAAT 57.218 30.769 0.00 0.00 36.90 2.71
2949 3080 7.762615 CGAGTGGACACATTTACCTAAGAATTA 59.237 37.037 5.14 0.00 0.00 1.40
2976 3107 4.131088 GAGGACAGACCGGTCGGC 62.131 72.222 31.17 25.23 44.74 5.54
2977 3108 3.812019 CGAGGACAGACCGGTCGG 61.812 72.222 29.91 29.91 44.74 4.79
2978 3109 2.745100 TCGAGGACAGACCGGTCG 60.745 66.667 28.26 23.67 44.74 4.79
2979 3110 2.408241 CCTCGAGGACAGACCGGTC 61.408 68.421 28.21 27.67 44.74 4.79
2980 3111 2.361357 CCTCGAGGACAGACCGGT 60.361 66.667 28.21 6.92 44.74 5.28
2981 3112 3.827898 GCCTCGAGGACAGACCGG 61.828 72.222 35.69 6.40 44.74 5.28
2982 3113 3.827898 GGCCTCGAGGACAGACCG 61.828 72.222 35.69 6.15 44.76 4.79
2983 3114 3.827898 CGGCCTCGAGGACAGACC 61.828 72.222 35.93 24.01 46.09 3.85
2984 3115 3.827898 CCGGCCTCGAGGACAGAC 61.828 72.222 35.93 17.22 46.09 3.51
2985 3116 4.361971 ACCGGCCTCGAGGACAGA 62.362 66.667 35.93 0.00 46.09 3.41
2986 3117 3.827898 GACCGGCCTCGAGGACAG 61.828 72.222 35.93 28.20 46.09 3.51
3005 3136 2.956964 GATCGAACGGGCAGCGAG 60.957 66.667 0.00 0.00 37.48 5.03
3006 3137 3.699955 CTGATCGAACGGGCAGCGA 62.700 63.158 0.00 0.00 38.51 4.93
3007 3138 3.257561 CTGATCGAACGGGCAGCG 61.258 66.667 0.00 0.00 0.00 5.18
3008 3139 2.892425 CCTGATCGAACGGGCAGC 60.892 66.667 7.71 0.00 0.00 5.25
3009 3140 2.202932 CCCTGATCGAACGGGCAG 60.203 66.667 14.88 5.50 35.17 4.85
3010 3141 2.682136 TCCCTGATCGAACGGGCA 60.682 61.111 14.88 0.00 37.89 5.36
3011 3142 2.202892 GTCCCTGATCGAACGGGC 60.203 66.667 14.88 7.80 37.89 6.13
3012 3143 1.940883 TTCGTCCCTGATCGAACGGG 61.941 60.000 13.45 13.45 40.34 5.28
3013 3144 0.102481 ATTCGTCCCTGATCGAACGG 59.898 55.000 5.35 0.00 46.11 4.44
3014 3145 1.588404 CAATTCGTCCCTGATCGAACG 59.412 52.381 2.29 0.00 46.11 3.95
3015 3146 2.618053 ACAATTCGTCCCTGATCGAAC 58.382 47.619 2.29 0.00 46.11 3.95
3017 3148 2.223409 CGTACAATTCGTCCCTGATCGA 60.223 50.000 0.00 0.00 0.00 3.59
3018 3149 2.117137 CGTACAATTCGTCCCTGATCG 58.883 52.381 0.00 0.00 0.00 3.69
3019 3150 3.160777 ACGTACAATTCGTCCCTGATC 57.839 47.619 0.00 0.00 36.85 2.92
3027 3158 2.722629 CGTTGTGAGACGTACAATTCGT 59.277 45.455 5.72 0.00 44.27 3.85
3028 3159 2.470140 GCGTTGTGAGACGTACAATTCG 60.470 50.000 5.72 6.91 44.50 3.34
3029 3160 2.473609 TGCGTTGTGAGACGTACAATTC 59.526 45.455 5.72 2.52 44.50 2.17
3030 3161 2.475818 TGCGTTGTGAGACGTACAATT 58.524 42.857 5.72 0.00 44.50 2.32
3031 3162 2.143008 TGCGTTGTGAGACGTACAAT 57.857 45.000 5.72 0.00 44.50 2.71
3032 3163 3.644774 TGCGTTGTGAGACGTACAA 57.355 47.368 0.00 0.00 44.50 2.41
3035 3166 0.318360 CCTGTGCGTTGTGAGACGTA 60.318 55.000 0.00 0.00 44.50 3.57
3036 3167 1.591594 CCTGTGCGTTGTGAGACGT 60.592 57.895 0.00 0.00 44.50 4.34
3037 3168 1.299850 TCCTGTGCGTTGTGAGACG 60.300 57.895 0.00 0.00 45.40 4.18
3038 3169 1.548973 CGTCCTGTGCGTTGTGAGAC 61.549 60.000 0.00 0.00 0.00 3.36
3039 3170 1.299850 CGTCCTGTGCGTTGTGAGA 60.300 57.895 0.00 0.00 0.00 3.27
3040 3171 2.943345 GCGTCCTGTGCGTTGTGAG 61.943 63.158 0.00 0.00 0.00 3.51
3041 3172 2.964925 GCGTCCTGTGCGTTGTGA 60.965 61.111 0.00 0.00 0.00 3.58
3042 3173 4.012895 GGCGTCCTGTGCGTTGTG 62.013 66.667 0.00 0.00 0.00 3.33
3043 3174 3.750373 AAGGCGTCCTGTGCGTTGT 62.750 57.895 0.00 0.00 38.82 3.32
3044 3175 2.954753 GAAGGCGTCCTGTGCGTTG 61.955 63.158 0.00 0.00 40.19 4.10
3045 3176 2.665185 GAAGGCGTCCTGTGCGTT 60.665 61.111 0.00 0.00 42.51 4.84
3046 3177 3.575351 GAGAAGGCGTCCTGTGCGT 62.575 63.158 0.00 0.00 32.13 5.24
3047 3178 2.811317 GAGAAGGCGTCCTGTGCG 60.811 66.667 0.00 0.00 32.13 5.34
3048 3179 2.435059 GGAGAAGGCGTCCTGTGC 60.435 66.667 0.00 0.00 32.13 4.57
3049 3180 0.951040 GTTGGAGAAGGCGTCCTGTG 60.951 60.000 0.00 0.00 34.86 3.66
3050 3181 1.371558 GTTGGAGAAGGCGTCCTGT 59.628 57.895 0.00 0.00 34.86 4.00
3051 3182 1.738099 CGTTGGAGAAGGCGTCCTG 60.738 63.158 0.00 0.00 34.86 3.86
3052 3183 2.657237 CGTTGGAGAAGGCGTCCT 59.343 61.111 0.00 0.00 34.86 3.85
3053 3184 3.119096 GCGTTGGAGAAGGCGTCC 61.119 66.667 0.00 0.00 33.57 4.79
3054 3185 3.119096 GGCGTTGGAGAAGGCGTC 61.119 66.667 0.00 0.00 42.71 5.19
3055 3186 3.591254 GAGGCGTTGGAGAAGGCGT 62.591 63.158 0.00 0.00 42.71 5.68
3056 3187 2.815647 GAGGCGTTGGAGAAGGCG 60.816 66.667 0.00 0.00 42.71 5.52
3057 3188 1.078143 ATGAGGCGTTGGAGAAGGC 60.078 57.895 0.00 0.00 41.36 4.35
3058 3189 0.539051 AGATGAGGCGTTGGAGAAGG 59.461 55.000 0.00 0.00 0.00 3.46
3059 3190 1.480137 AGAGATGAGGCGTTGGAGAAG 59.520 52.381 0.00 0.00 0.00 2.85
3060 3191 1.478510 GAGAGATGAGGCGTTGGAGAA 59.521 52.381 0.00 0.00 0.00 2.87
3061 3192 1.107114 GAGAGATGAGGCGTTGGAGA 58.893 55.000 0.00 0.00 0.00 3.71
3062 3193 0.103937 GGAGAGATGAGGCGTTGGAG 59.896 60.000 0.00 0.00 0.00 3.86
3063 3194 1.667154 CGGAGAGATGAGGCGTTGGA 61.667 60.000 0.00 0.00 0.00 3.53
3064 3195 1.227089 CGGAGAGATGAGGCGTTGG 60.227 63.158 0.00 0.00 0.00 3.77
3065 3196 1.880340 GCGGAGAGATGAGGCGTTG 60.880 63.158 0.00 0.00 0.00 4.10
3066 3197 2.351244 TGCGGAGAGATGAGGCGTT 61.351 57.895 0.00 0.00 0.00 4.84
3067 3198 2.755876 TGCGGAGAGATGAGGCGT 60.756 61.111 0.00 0.00 0.00 5.68
3068 3199 2.279120 GTGCGGAGAGATGAGGCG 60.279 66.667 0.00 0.00 0.00 5.52
3069 3200 2.279120 CGTGCGGAGAGATGAGGC 60.279 66.667 0.00 0.00 0.00 4.70
3070 3201 2.279120 GCGTGCGGAGAGATGAGG 60.279 66.667 0.00 0.00 0.00 3.86
3071 3202 2.279120 GGCGTGCGGAGAGATGAG 60.279 66.667 0.00 0.00 0.00 2.90
3072 3203 4.193334 CGGCGTGCGGAGAGATGA 62.193 66.667 0.00 0.00 0.00 2.92
3082 3213 3.188786 CTGAACTAGCCGGCGTGC 61.189 66.667 23.20 13.54 0.00 5.34
3091 3222 2.799412 GGAAGATGCGATGCTGAACTAG 59.201 50.000 0.00 0.00 0.00 2.57
3092 3223 2.483714 GGGAAGATGCGATGCTGAACTA 60.484 50.000 0.00 0.00 0.00 2.24
3093 3224 1.661341 GGAAGATGCGATGCTGAACT 58.339 50.000 0.00 0.00 0.00 3.01
3094 3225 0.659957 GGGAAGATGCGATGCTGAAC 59.340 55.000 0.00 0.00 0.00 3.18
3095 3226 0.543277 AGGGAAGATGCGATGCTGAA 59.457 50.000 0.00 0.00 0.00 3.02
3096 3227 0.543277 AAGGGAAGATGCGATGCTGA 59.457 50.000 0.00 0.00 0.00 4.26
3097 3228 0.942962 GAAGGGAAGATGCGATGCTG 59.057 55.000 0.00 0.00 0.00 4.41
3098 3229 0.835941 AGAAGGGAAGATGCGATGCT 59.164 50.000 0.00 0.00 0.00 3.79
3099 3230 2.139118 GTAGAAGGGAAGATGCGATGC 58.861 52.381 0.00 0.00 0.00 3.91
3100 3231 2.223829 ACGTAGAAGGGAAGATGCGATG 60.224 50.000 0.00 0.00 0.00 3.84
3101 3232 2.032620 ACGTAGAAGGGAAGATGCGAT 58.967 47.619 0.00 0.00 0.00 4.58
3102 3233 1.471119 ACGTAGAAGGGAAGATGCGA 58.529 50.000 0.00 0.00 0.00 5.10
3103 3234 2.295253 AACGTAGAAGGGAAGATGCG 57.705 50.000 0.00 0.00 0.00 4.73
3104 3235 3.751698 ACAAAACGTAGAAGGGAAGATGC 59.248 43.478 0.00 0.00 0.00 3.91
3105 3236 5.941948 AACAAAACGTAGAAGGGAAGATG 57.058 39.130 0.00 0.00 0.00 2.90
3106 3237 6.296803 AGAAACAAAACGTAGAAGGGAAGAT 58.703 36.000 0.00 0.00 0.00 2.40
3107 3238 5.677567 AGAAACAAAACGTAGAAGGGAAGA 58.322 37.500 0.00 0.00 0.00 2.87
3108 3239 6.260271 AGAAGAAACAAAACGTAGAAGGGAAG 59.740 38.462 0.00 0.00 0.00 3.46
3109 3240 6.117488 AGAAGAAACAAAACGTAGAAGGGAA 58.883 36.000 0.00 0.00 0.00 3.97
3110 3241 5.677567 AGAAGAAACAAAACGTAGAAGGGA 58.322 37.500 0.00 0.00 0.00 4.20
3111 3242 5.758784 AGAGAAGAAACAAAACGTAGAAGGG 59.241 40.000 0.00 0.00 0.00 3.95
3112 3243 6.073711 GGAGAGAAGAAACAAAACGTAGAAGG 60.074 42.308 0.00 0.00 0.00 3.46
3113 3244 6.345882 CGGAGAGAAGAAACAAAACGTAGAAG 60.346 42.308 0.00 0.00 0.00 2.85
3114 3245 5.461078 CGGAGAGAAGAAACAAAACGTAGAA 59.539 40.000 0.00 0.00 0.00 2.10
3115 3246 4.980434 CGGAGAGAAGAAACAAAACGTAGA 59.020 41.667 0.00 0.00 0.00 2.59
3116 3247 4.376109 GCGGAGAGAAGAAACAAAACGTAG 60.376 45.833 0.00 0.00 0.00 3.51
3117 3248 3.492011 GCGGAGAGAAGAAACAAAACGTA 59.508 43.478 0.00 0.00 0.00 3.57
3118 3249 2.287103 GCGGAGAGAAGAAACAAAACGT 59.713 45.455 0.00 0.00 0.00 3.99
3119 3250 2.286833 TGCGGAGAGAAGAAACAAAACG 59.713 45.455 0.00 0.00 0.00 3.60
3120 3251 3.618698 GTGCGGAGAGAAGAAACAAAAC 58.381 45.455 0.00 0.00 0.00 2.43
3121 3252 2.286833 CGTGCGGAGAGAAGAAACAAAA 59.713 45.455 0.00 0.00 0.00 2.44
3122 3253 1.864711 CGTGCGGAGAGAAGAAACAAA 59.135 47.619 0.00 0.00 0.00 2.83
3123 3254 1.497991 CGTGCGGAGAGAAGAAACAA 58.502 50.000 0.00 0.00 0.00 2.83
3124 3255 0.944311 GCGTGCGGAGAGAAGAAACA 60.944 55.000 0.00 0.00 0.00 2.83
3125 3256 1.627550 GGCGTGCGGAGAGAAGAAAC 61.628 60.000 0.00 0.00 0.00 2.78
3126 3257 1.374252 GGCGTGCGGAGAGAAGAAA 60.374 57.895 0.00 0.00 0.00 2.52
3127 3258 1.888436 ATGGCGTGCGGAGAGAAGAA 61.888 55.000 0.00 0.00 0.00 2.52
3128 3259 2.351244 ATGGCGTGCGGAGAGAAGA 61.351 57.895 0.00 0.00 0.00 2.87
3129 3260 2.169789 CATGGCGTGCGGAGAGAAG 61.170 63.158 0.00 0.00 0.00 2.85
3130 3261 2.125552 CATGGCGTGCGGAGAGAA 60.126 61.111 0.00 0.00 0.00 2.87
3131 3262 4.819761 GCATGGCGTGCGGAGAGA 62.820 66.667 16.98 0.00 45.23 3.10
3139 3270 3.067480 GATGGGTTGGCATGGCGTG 62.067 63.158 15.27 1.31 0.00 5.34
3140 3271 2.755469 GATGGGTTGGCATGGCGT 60.755 61.111 15.27 0.00 0.00 5.68
3141 3272 3.530260 GGATGGGTTGGCATGGCG 61.530 66.667 15.27 0.00 0.00 5.69
3162 3293 4.338710 CCTTGGCGGGAAACGGGA 62.339 66.667 0.00 0.00 44.51 5.14
3177 3309 2.670934 CTGTCGCAGCTTTGGCCT 60.671 61.111 3.32 0.00 39.73 5.19
3181 3313 3.300667 GACGCCTGTCGCAGCTTTG 62.301 63.158 1.84 0.00 43.23 2.77
3197 3329 0.032130 TGTTCACAGAGTCGGCTGAC 59.968 55.000 18.39 18.39 45.86 3.51
3207 3339 1.112916 TGGGACTCGCTGTTCACAGA 61.113 55.000 11.29 0.00 46.59 3.41
3217 3349 2.508663 GCGTAGGTTGGGACTCGC 60.509 66.667 0.00 0.00 35.13 5.03
3219 3351 2.183555 CCGCGTAGGTTGGGACTC 59.816 66.667 4.92 0.00 34.51 3.36
3250 3382 9.773328 TTAGCATGAATATAATCTAAATTGCGC 57.227 29.630 0.00 0.00 0.00 6.09
3279 3411 2.738314 GCTCCCACAATTGCATTTGTTC 59.262 45.455 21.19 7.59 37.73 3.18
3316 3448 2.893489 GGATGTTGGCTGTTTTCCTTCT 59.107 45.455 0.00 0.00 0.00 2.85
3328 3460 1.202510 TGCTTGTTTGTGGATGTTGGC 60.203 47.619 0.00 0.00 0.00 4.52
3329 3461 2.472816 GTGCTTGTTTGTGGATGTTGG 58.527 47.619 0.00 0.00 0.00 3.77
3345 3477 8.203485 TGAGAAGATTAAAATTTGTTTGGTGCT 58.797 29.630 0.00 0.00 0.00 4.40
3346 3478 8.364129 TGAGAAGATTAAAATTTGTTTGGTGC 57.636 30.769 0.00 0.00 0.00 5.01
3366 3498 5.375773 TGTGGTCATCAAAAGTCATGAGAA 58.624 37.500 0.00 0.00 29.46 2.87
3433 3565 1.672881 GTATCATCAAGGTGTGGCAGC 59.327 52.381 0.00 0.00 0.00 5.25
3436 3568 3.266510 TGAGTATCATCAAGGTGTGGC 57.733 47.619 0.00 0.00 42.56 5.01
3455 3587 0.824109 TACCCGTCAATGCTCCTCTG 59.176 55.000 0.00 0.00 0.00 3.35
3463 3595 2.032426 GCCGGTTTAATACCCGTCAATG 59.968 50.000 1.90 0.00 44.70 2.82
3469 3601 2.536673 GCGGCCGGTTTAATACCCG 61.537 63.158 29.38 5.84 44.70 5.28
3486 3618 7.384477 TCTAACTTCAAAAGTAAGGGAGTAGC 58.616 38.462 0.00 0.00 41.91 3.58
3497 3629 7.147915 TGCAGATTGGTTTCTAACTTCAAAAGT 60.148 33.333 0.00 0.00 45.46 2.66
3499 3631 7.106439 TGCAGATTGGTTTCTAACTTCAAAA 57.894 32.000 0.00 0.00 0.00 2.44
3500 3632 6.707440 TGCAGATTGGTTTCTAACTTCAAA 57.293 33.333 0.00 0.00 0.00 2.69
3529 3661 2.667137 GTCGTTCTCCTCTTGTGTGAG 58.333 52.381 0.00 0.00 0.00 3.51
3531 3663 1.001706 TCGTCGTTCTCCTCTTGTGTG 60.002 52.381 0.00 0.00 0.00 3.82
3532 3664 1.001597 GTCGTCGTTCTCCTCTTGTGT 60.002 52.381 0.00 0.00 0.00 3.72
3533 3665 1.666311 GGTCGTCGTTCTCCTCTTGTG 60.666 57.143 0.00 0.00 0.00 3.33
3540 3672 2.935481 ATTACTGGTCGTCGTTCTCC 57.065 50.000 0.00 0.00 0.00 3.71
3549 3681 6.446659 AATTTTGCGAAAAATTACTGGTCG 57.553 33.333 22.66 0.00 39.71 4.79
3553 3685 8.226543 TCTGCTAATTTTGCGAAAAATTACTG 57.773 30.769 24.19 21.74 41.21 2.74
3563 3695 1.094785 GGGCTCTGCTAATTTTGCGA 58.905 50.000 0.00 0.00 0.00 5.10
3565 3697 1.064654 CTCGGGCTCTGCTAATTTTGC 59.935 52.381 0.00 0.00 0.00 3.68
3580 3712 1.403687 GGGGAGGAATCTGTCTCGGG 61.404 65.000 0.00 0.00 0.00 5.14
3610 3742 9.730705 AATCTGACACTTAAGAAATGATCTGAA 57.269 29.630 10.09 0.00 38.79 3.02
3643 3775 5.477510 TGTGTGCAAGTCACTTTCATTTTT 58.522 33.333 7.38 0.00 45.81 1.94
3657 3789 3.037431 AGCTCTCTAGTTGTGTGCAAG 57.963 47.619 0.00 0.00 34.94 4.01
3673 3806 7.590689 GCTTATCTTGCTGAATCAATTAAGCTC 59.409 37.037 12.29 0.00 43.37 4.09
3687 3820 4.669318 CAGATTGGTTGCTTATCTTGCTG 58.331 43.478 0.00 0.00 0.00 4.41
3689 3822 3.442100 GCAGATTGGTTGCTTATCTTGC 58.558 45.455 0.00 0.00 38.51 4.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.