Multiple sequence alignment - TraesCS4D01G107800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G107800 chr4D 100.000 7081 0 0 1 7081 85876502 85883582 0.000000e+00 13077.0
1 TraesCS4D01G107800 chr4D 79.494 356 42 10 1834 2160 210822474 210822827 2.570000e-54 224.0
2 TraesCS4D01G107800 chr4D 76.163 172 23 8 5175 5332 350975450 350975617 2.740000e-09 75.0
3 TraesCS4D01G107800 chr4D 74.586 181 30 9 5165 5332 50079220 50079397 1.650000e-06 65.8
4 TraesCS4D01G107800 chr4D 95.000 40 2 0 6375 6414 85882804 85882843 5.930000e-06 63.9
5 TraesCS4D01G107800 chr4D 95.000 40 2 0 6303 6342 85882876 85882915 5.930000e-06 63.9
6 TraesCS4D01G107800 chr4A 94.392 5867 187 55 588 6378 500112898 500118698 0.000000e+00 8881.0
7 TraesCS4D01G107800 chr4A 85.714 357 18 12 6339 6690 500118620 500118948 5.260000e-91 346.0
8 TraesCS4D01G107800 chr4A 97.436 39 1 0 6304 6342 500118660 500118698 4.580000e-07 67.6
9 TraesCS4D01G107800 chr4B 95.206 3004 86 17 2529 5491 123450823 123453809 0.000000e+00 4697.0
10 TraesCS4D01G107800 chr4B 93.781 2187 71 19 352 2504 123448674 123450829 0.000000e+00 3225.0
11 TraesCS4D01G107800 chr4B 94.340 901 40 6 5488 6378 123454004 123454903 0.000000e+00 1371.0
12 TraesCS4D01G107800 chr4B 85.141 747 55 21 6339 7081 123454827 123455521 0.000000e+00 713.0
13 TraesCS4D01G107800 chr4B 80.038 531 62 22 405 918 123447187 123447690 3.140000e-93 353.0
14 TraesCS4D01G107800 chr5A 72.563 1272 263 71 3558 4801 245440556 245439343 3.160000e-88 337.0
15 TraesCS4D01G107800 chr5A 89.157 166 17 1 68 232 563359786 563359951 9.310000e-49 206.0
16 TraesCS4D01G107800 chr5B 72.122 1277 267 71 3558 4801 206796849 206798069 3.210000e-78 303.0
17 TraesCS4D01G107800 chr5D 71.596 1278 272 69 3558 4801 205570837 205569617 1.510000e-66 265.0
18 TraesCS4D01G107800 chr5D 83.146 89 12 3 252 337 6979697 6979785 2.120000e-10 78.7
19 TraesCS4D01G107800 chr5D 94.444 36 2 0 5172 5207 365990840 365990875 1.000000e-03 56.5
20 TraesCS4D01G107800 chr1D 80.618 356 38 12 1834 2160 32721158 32721511 5.490000e-61 246.0
21 TraesCS4D01G107800 chr1D 88.554 166 18 1 68 232 69475969 69475804 4.330000e-47 200.0
22 TraesCS4D01G107800 chr1D 85.185 135 19 1 2641 2775 35429832 35429965 3.440000e-28 137.0
23 TraesCS4D01G107800 chr1D 89.796 49 5 0 1860 1908 236030107 236030155 5.930000e-06 63.9
24 TraesCS4D01G107800 chr1D 88.462 52 6 0 1860 1911 444484529 444484478 5.930000e-06 63.9
25 TraesCS4D01G107800 chr1D 94.444 36 2 0 5172 5207 246508694 246508729 1.000000e-03 56.5
26 TraesCS4D01G107800 chr3A 90.361 166 15 1 68 232 111840095 111839930 4.300000e-52 217.0
27 TraesCS4D01G107800 chr3A 89.157 166 17 1 68 232 597888023 597887858 9.310000e-49 206.0
28 TraesCS4D01G107800 chr3A 86.932 176 21 2 59 232 670674209 670674034 5.600000e-46 196.0
29 TraesCS4D01G107800 chr3A 76.000 175 24 8 5172 5332 137345561 137345731 2.740000e-09 75.0
30 TraesCS4D01G107800 chr3A 93.333 45 3 0 7012 7056 8571257 8571301 4.580000e-07 67.6
31 TraesCS4D01G107800 chr2A 87.429 175 18 4 60 232 471010120 471010292 1.560000e-46 198.0
32 TraesCS4D01G107800 chr2A 76.220 164 23 8 5168 5318 759855163 759855323 9.850000e-09 73.1
33 TraesCS4D01G107800 chr7D 88.024 167 18 2 68 232 614107456 614107622 5.600000e-46 196.0
34 TraesCS4D01G107800 chr7D 85.600 125 18 0 2637 2761 583605186 583605062 1.600000e-26 132.0
35 TraesCS4D01G107800 chr7D 89.796 49 5 0 1860 1908 366741863 366741911 5.930000e-06 63.9
36 TraesCS4D01G107800 chr7D 88.462 52 6 0 1860 1911 400232098 400232047 5.930000e-06 63.9
37 TraesCS4D01G107800 chr7A 88.024 167 18 2 68 232 720003312 720003478 5.600000e-46 196.0
38 TraesCS4D01G107800 chr7A 82.400 125 22 0 2637 2761 269026593 269026469 7.510000e-20 110.0
39 TraesCS4D01G107800 chr6A 88.095 168 17 3 68 232 2935917 2936084 5.600000e-46 196.0
40 TraesCS4D01G107800 chr6A 74.432 176 25 10 5172 5332 144293796 144293966 2.760000e-04 58.4
41 TraesCS4D01G107800 chr6D 84.733 131 19 1 2631 2761 78609759 78609888 5.760000e-26 130.0
42 TraesCS4D01G107800 chr6D 82.443 131 18 3 2632 2757 153196526 153196396 7.510000e-20 110.0
43 TraesCS4D01G107800 chr6D 76.647 167 25 5 5178 5332 387379171 387379007 5.890000e-11 80.5
44 TraesCS4D01G107800 chr2D 85.600 125 17 1 2637 2761 481331569 481331446 5.760000e-26 130.0
45 TraesCS4D01G107800 chr2D 91.892 37 3 0 2750 2786 498363207 498363171 1.300000e-02 52.8
46 TraesCS4D01G107800 chr6B 84.677 124 16 3 2634 2757 135844126 135844246 3.470000e-23 121.0
47 TraesCS4D01G107800 chr2B 76.398 161 20 9 5172 5318 355934261 355934417 3.540000e-08 71.3
48 TraesCS4D01G107800 chr2B 100.000 28 0 0 2750 2777 329479700 329479673 1.300000e-02 52.8
49 TraesCS4D01G107800 chr1A 75.740 169 23 8 5178 5332 40357934 40357770 1.270000e-07 69.4
50 TraesCS4D01G107800 chr3D 96.970 33 1 0 5175 5207 571923425 571923457 1.000000e-03 56.5
51 TraesCS4D01G107800 chr1B 94.286 35 0 1 2750 2784 268403418 268403386 1.300000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G107800 chr4D 85876502 85883582 7080 False 4401.6 13077 96.666667 1 7081 3 chr4D.!!$F4 7080
1 TraesCS4D01G107800 chr4A 500112898 500118948 6050 False 3098.2 8881 92.514000 588 6690 3 chr4A.!!$F1 6102
2 TraesCS4D01G107800 chr4B 123447187 123455521 8334 False 2071.8 4697 89.701200 352 7081 5 chr4B.!!$F1 6729
3 TraesCS4D01G107800 chr5A 245439343 245440556 1213 True 337.0 337 72.563000 3558 4801 1 chr5A.!!$R1 1243
4 TraesCS4D01G107800 chr5B 206796849 206798069 1220 False 303.0 303 72.122000 3558 4801 1 chr5B.!!$F1 1243
5 TraesCS4D01G107800 chr5D 205569617 205570837 1220 True 265.0 265 71.596000 3558 4801 1 chr5D.!!$R1 1243

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
119 120 0.099968 TACGTGCATACACTCGCCTC 59.900 55.000 0.00 0.00 45.10 4.70 F
146 147 0.165944 GCACACACGCACATTCTACC 59.834 55.000 0.00 0.00 0.00 3.18 F
222 223 0.238817 CATCGTAGGCGCCTCTAGTC 59.761 60.000 36.73 17.68 38.14 2.59 F
260 261 0.390492 TGCGAGCACCAGGATAGATG 59.610 55.000 0.00 0.00 0.00 2.90 F
1465 2621 0.392327 TCCTTTGATGATTGCGCCGA 60.392 50.000 4.18 0.00 0.00 5.54 F
1782 2963 2.034939 ACTGTATCAACGTGTTCGACCA 59.965 45.455 0.00 0.00 40.62 4.02 F
3088 4327 3.136626 AGCTTACTTCCAGAGGTGTTTGT 59.863 43.478 0.00 0.00 0.00 2.83 F
3331 4570 1.137282 GTGCCAGCTAACTCTACTCCC 59.863 57.143 0.00 0.00 0.00 4.30 F
4745 6045 2.071778 TTTGCCTTCAAGCTTCAGGT 57.928 45.000 18.62 0.00 33.12 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1232 2388 0.032815 CCACGCCCGGTCAAATTTTT 59.967 50.000 0.00 0.00 0.00 1.94 R
1630 2811 0.104671 ACAAACACATTGCTGGCCAC 59.895 50.000 0.00 0.00 43.13 5.01 R
1633 2814 2.129607 CTGAACAAACACATTGCTGGC 58.870 47.619 0.00 0.00 43.13 4.85 R
1666 2847 3.870274 TCCAAGTCTGAAGCATCATCAG 58.130 45.455 0.00 0.00 44.53 2.90 R
2723 3937 0.529773 CGATAGCCAAACGCCTAGCA 60.530 55.000 0.00 0.00 38.78 3.49 R
3304 4543 0.944386 AGTTAGCTGGCACAAACACG 59.056 50.000 0.00 0.00 38.70 4.49 R
4854 6154 0.320247 AACTCTCAGAACCTGCAGCG 60.320 55.000 8.66 4.27 0.00 5.18 R
4923 6223 2.232208 CAGAAGTTGAATTGGGCCCTTC 59.768 50.000 25.70 19.82 0.00 3.46 R
6238 7762 0.107703 CGGTGCATCTGGTGTATGGT 60.108 55.000 0.00 0.00 0.00 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 7.860649 TGGGAATACTTACGTAAATATCCCT 57.139 36.000 29.32 11.99 38.19 4.20
42 43 8.266363 TGGGAATACTTACGTAAATATCCCTT 57.734 34.615 29.32 12.27 38.19 3.95
44 45 9.212641 GGGAATACTTACGTAAATATCCCTTTC 57.787 37.037 25.87 14.96 36.46 2.62
49 50 8.851541 ACTTACGTAAATATCCCTTTCAACAA 57.148 30.769 9.68 0.00 0.00 2.83
50 51 9.457436 ACTTACGTAAATATCCCTTTCAACAAT 57.543 29.630 9.68 0.00 0.00 2.71
54 55 8.248253 ACGTAAATATCCCTTTCAACAATTTCC 58.752 33.333 0.00 0.00 0.00 3.13
55 56 8.466798 CGTAAATATCCCTTTCAACAATTTCCT 58.533 33.333 0.00 0.00 0.00 3.36
56 57 9.586435 GTAAATATCCCTTTCAACAATTTCCTG 57.414 33.333 0.00 0.00 0.00 3.86
57 58 6.796785 ATATCCCTTTCAACAATTTCCTGG 57.203 37.500 0.00 0.00 0.00 4.45
58 59 3.922375 TCCCTTTCAACAATTTCCTGGT 58.078 40.909 0.00 0.00 0.00 4.00
59 60 5.068215 TCCCTTTCAACAATTTCCTGGTA 57.932 39.130 0.00 0.00 0.00 3.25
61 62 5.900123 TCCCTTTCAACAATTTCCTGGTAAA 59.100 36.000 0.00 0.00 0.00 2.01
62 63 6.384305 TCCCTTTCAACAATTTCCTGGTAAAA 59.616 34.615 0.00 0.00 0.00 1.52
63 64 7.051000 CCCTTTCAACAATTTCCTGGTAAAAA 58.949 34.615 0.00 0.00 0.00 1.94
88 89 8.594881 AAAATTTGAACACAGTACAAACACAA 57.405 26.923 0.00 0.00 36.57 3.33
89 90 8.770438 AAATTTGAACACAGTACAAACACAAT 57.230 26.923 0.00 0.00 36.57 2.71
90 91 7.985634 ATTTGAACACAGTACAAACACAATC 57.014 32.000 0.00 0.00 36.57 2.67
91 92 5.150342 TGAACACAGTACAAACACAATCG 57.850 39.130 0.00 0.00 0.00 3.34
92 93 4.632251 TGAACACAGTACAAACACAATCGT 59.368 37.500 0.00 0.00 0.00 3.73
94 95 5.151632 ACACAGTACAAACACAATCGTTC 57.848 39.130 0.00 0.00 0.00 3.95
98 99 7.172532 ACACAGTACAAACACAATCGTTCATAT 59.827 33.333 0.00 0.00 0.00 1.78
99 100 8.652463 CACAGTACAAACACAATCGTTCATATA 58.348 33.333 0.00 0.00 0.00 0.86
100 101 9.378551 ACAGTACAAACACAATCGTTCATATAT 57.621 29.630 0.00 0.00 0.00 0.86
103 104 9.773670 GTACAAACACAATCGTTCATATATACG 57.226 33.333 2.23 2.23 39.03 3.06
105 106 8.325282 ACAAACACAATCGTTCATATATACGTG 58.675 33.333 0.00 3.50 38.79 4.49
108 109 6.645003 ACACAATCGTTCATATATACGTGCAT 59.355 34.615 0.00 0.00 38.79 3.96
109 110 7.810759 ACACAATCGTTCATATATACGTGCATA 59.189 33.333 0.00 0.00 38.79 3.14
110 111 8.102112 CACAATCGTTCATATATACGTGCATAC 58.898 37.037 0.00 0.00 38.79 2.39
112 113 7.736031 ATCGTTCATATATACGTGCATACAC 57.264 36.000 0.00 0.00 43.76 2.90
113 114 6.905578 TCGTTCATATATACGTGCATACACT 58.094 36.000 0.00 0.00 45.10 3.55
114 115 7.019418 TCGTTCATATATACGTGCATACACTC 58.981 38.462 0.00 0.00 45.10 3.51
116 117 5.329493 TCATATATACGTGCATACACTCGC 58.671 41.667 0.00 0.00 45.10 5.03
119 120 0.099968 TACGTGCATACACTCGCCTC 59.900 55.000 0.00 0.00 45.10 4.70
120 121 1.139734 CGTGCATACACTCGCCTCT 59.860 57.895 0.00 0.00 45.10 3.69
121 122 0.380733 CGTGCATACACTCGCCTCTA 59.619 55.000 0.00 0.00 45.10 2.43
122 123 1.001268 CGTGCATACACTCGCCTCTAT 60.001 52.381 0.00 0.00 45.10 1.98
123 124 2.398498 GTGCATACACTCGCCTCTATG 58.602 52.381 0.00 0.00 43.85 2.23
124 125 2.034685 GTGCATACACTCGCCTCTATGA 59.965 50.000 0.00 0.00 43.85 2.15
126 127 3.053455 GCATACACTCGCCTCTATGAAC 58.947 50.000 0.00 0.00 0.00 3.18
127 128 3.300857 CATACACTCGCCTCTATGAACG 58.699 50.000 0.00 0.00 0.00 3.95
128 129 0.179134 ACACTCGCCTCTATGAACGC 60.179 55.000 0.00 0.00 0.00 4.84
130 131 0.179134 ACTCGCCTCTATGAACGCAC 60.179 55.000 0.00 0.00 0.00 5.34
132 133 0.457853 TCGCCTCTATGAACGCACAC 60.458 55.000 0.00 0.00 0.00 3.82
133 134 0.735978 CGCCTCTATGAACGCACACA 60.736 55.000 0.00 0.00 0.00 3.72
134 135 0.721718 GCCTCTATGAACGCACACAC 59.278 55.000 0.00 0.00 0.00 3.82
135 136 0.992072 CCTCTATGAACGCACACACG 59.008 55.000 0.00 0.00 39.50 4.49
136 137 0.366871 CTCTATGAACGCACACACGC 59.633 55.000 0.00 0.00 36.19 5.34
137 138 0.319125 TCTATGAACGCACACACGCA 60.319 50.000 0.00 0.00 36.19 5.24
138 139 0.179250 CTATGAACGCACACACGCAC 60.179 55.000 0.00 0.00 36.19 5.34
139 140 0.876342 TATGAACGCACACACGCACA 60.876 50.000 0.00 0.00 36.19 4.57
140 141 1.506309 ATGAACGCACACACGCACAT 61.506 50.000 0.00 0.00 36.19 3.21
142 143 0.991770 GAACGCACACACGCACATTC 60.992 55.000 0.00 0.00 36.19 2.67
143 144 1.436195 AACGCACACACGCACATTCT 61.436 50.000 0.00 0.00 36.19 2.40
144 145 0.598942 ACGCACACACGCACATTCTA 60.599 50.000 0.00 0.00 36.19 2.10
145 146 0.179250 CGCACACACGCACATTCTAC 60.179 55.000 0.00 0.00 0.00 2.59
146 147 0.165944 GCACACACGCACATTCTACC 59.834 55.000 0.00 0.00 0.00 3.18
147 148 0.796312 CACACACGCACATTCTACCC 59.204 55.000 0.00 0.00 0.00 3.69
150 151 1.206132 CACACGCACATTCTACCCCTA 59.794 52.381 0.00 0.00 0.00 3.53
154 155 4.202223 ACACGCACATTCTACCCCTATAAG 60.202 45.833 0.00 0.00 0.00 1.73
155 156 3.244112 ACGCACATTCTACCCCTATAAGC 60.244 47.826 0.00 0.00 0.00 3.09
156 157 3.244078 CGCACATTCTACCCCTATAAGCA 60.244 47.826 0.00 0.00 0.00 3.91
157 158 4.563580 CGCACATTCTACCCCTATAAGCAT 60.564 45.833 0.00 0.00 0.00 3.79
158 159 4.938226 GCACATTCTACCCCTATAAGCATC 59.062 45.833 0.00 0.00 0.00 3.91
159 160 5.280215 GCACATTCTACCCCTATAAGCATCT 60.280 44.000 0.00 0.00 0.00 2.90
160 161 6.402222 CACATTCTACCCCTATAAGCATCTC 58.598 44.000 0.00 0.00 0.00 2.75
161 162 6.212388 CACATTCTACCCCTATAAGCATCTCT 59.788 42.308 0.00 0.00 0.00 3.10
165 166 4.477536 ACCCCTATAAGCATCTCTGAGA 57.522 45.455 10.23 10.23 0.00 3.27
166 167 5.022227 ACCCCTATAAGCATCTCTGAGAT 57.978 43.478 14.31 14.31 34.74 2.75
167 168 6.159172 ACCCCTATAAGCATCTCTGAGATA 57.841 41.667 19.16 5.16 32.12 1.98
168 169 5.955355 ACCCCTATAAGCATCTCTGAGATAC 59.045 44.000 19.16 14.16 32.12 2.24
169 170 6.194235 CCCCTATAAGCATCTCTGAGATACT 58.806 44.000 19.16 16.19 32.12 2.12
170 171 6.096705 CCCCTATAAGCATCTCTGAGATACTG 59.903 46.154 18.66 10.95 32.12 2.74
171 172 6.889177 CCCTATAAGCATCTCTGAGATACTGA 59.111 42.308 18.66 13.09 32.12 3.41
172 173 7.067372 CCCTATAAGCATCTCTGAGATACTGAG 59.933 44.444 18.66 15.39 43.07 3.35
174 175 5.772825 AAGCATCTCTGAGATACTGAGTC 57.227 43.478 18.66 5.21 42.55 3.36
175 176 3.814842 AGCATCTCTGAGATACTGAGTCG 59.185 47.826 19.16 6.45 42.55 4.18
177 178 2.566913 TCTCTGAGATACTGAGTCGGC 58.433 52.381 2.58 0.00 42.55 5.54
178 179 2.092914 TCTCTGAGATACTGAGTCGGCA 60.093 50.000 2.58 0.00 42.55 5.69
180 181 4.068599 CTCTGAGATACTGAGTCGGCATA 58.931 47.826 0.00 0.00 38.95 3.14
182 183 4.697828 TCTGAGATACTGAGTCGGCATATC 59.302 45.833 0.00 0.00 0.00 1.63
183 184 4.398319 TGAGATACTGAGTCGGCATATCA 58.602 43.478 5.54 5.54 0.00 2.15
184 185 5.012893 TGAGATACTGAGTCGGCATATCAT 58.987 41.667 5.54 0.00 0.00 2.45
185 186 5.124617 TGAGATACTGAGTCGGCATATCATC 59.875 44.000 5.54 4.67 0.00 2.92
186 187 5.260424 AGATACTGAGTCGGCATATCATCT 58.740 41.667 10.61 0.00 0.00 2.90
187 188 5.714333 AGATACTGAGTCGGCATATCATCTT 59.286 40.000 10.61 0.00 0.00 2.40
188 189 3.987547 ACTGAGTCGGCATATCATCTTG 58.012 45.455 0.00 0.00 0.00 3.02
189 190 3.638627 ACTGAGTCGGCATATCATCTTGA 59.361 43.478 0.00 0.00 0.00 3.02
190 191 4.236147 CTGAGTCGGCATATCATCTTGAG 58.764 47.826 0.00 0.00 0.00 3.02
191 192 3.891366 TGAGTCGGCATATCATCTTGAGA 59.109 43.478 0.00 0.00 0.00 3.27
192 193 4.525874 TGAGTCGGCATATCATCTTGAGAT 59.474 41.667 0.00 0.00 34.56 2.75
193 194 5.011431 TGAGTCGGCATATCATCTTGAGATT 59.989 40.000 0.00 0.00 31.21 2.40
195 196 6.294473 AGTCGGCATATCATCTTGAGATTTT 58.706 36.000 0.00 0.00 31.21 1.82
197 198 7.386299 AGTCGGCATATCATCTTGAGATTTTAC 59.614 37.037 0.00 0.00 31.21 2.01
198 199 6.366061 TCGGCATATCATCTTGAGATTTTACG 59.634 38.462 0.00 0.00 31.21 3.18
199 200 6.366061 CGGCATATCATCTTGAGATTTTACGA 59.634 38.462 0.00 0.00 31.21 3.43
201 202 8.226448 GGCATATCATCTTGAGATTTTACGAAG 58.774 37.037 0.00 0.00 31.21 3.79
202 203 8.768955 GCATATCATCTTGAGATTTTACGAAGT 58.231 33.333 0.00 0.00 37.29 3.01
205 206 8.954950 ATCATCTTGAGATTTTACGAAGTCAT 57.045 30.769 0.00 0.00 35.39 3.06
206 207 8.412608 TCATCTTGAGATTTTACGAAGTCATC 57.587 34.615 0.00 0.00 35.39 2.92
207 208 7.220875 TCATCTTGAGATTTTACGAAGTCATCG 59.779 37.037 0.00 0.00 44.39 3.84
214 215 3.601981 CGAAGTCATCGTAGGCGC 58.398 61.111 0.00 0.00 46.52 6.53
215 216 1.944676 CGAAGTCATCGTAGGCGCC 60.945 63.158 21.89 21.89 46.52 6.53
217 218 0.595310 GAAGTCATCGTAGGCGCCTC 60.595 60.000 36.73 23.04 38.14 4.70
222 223 0.238817 CATCGTAGGCGCCTCTAGTC 59.761 60.000 36.73 17.68 38.14 2.59
223 224 1.229315 ATCGTAGGCGCCTCTAGTCG 61.229 60.000 36.73 27.37 38.14 4.18
224 225 1.886313 CGTAGGCGCCTCTAGTCGA 60.886 63.158 36.73 11.30 0.00 4.20
225 226 1.833434 CGTAGGCGCCTCTAGTCGAG 61.833 65.000 36.73 12.35 39.57 4.04
247 248 3.879932 GGAACCAAAGTATATGCGAGC 57.120 47.619 0.00 0.00 0.00 5.03
248 249 3.202906 GGAACCAAAGTATATGCGAGCA 58.797 45.455 0.00 0.00 0.00 4.26
249 250 3.002348 GGAACCAAAGTATATGCGAGCAC 59.998 47.826 0.00 0.00 0.00 4.40
250 251 2.561569 ACCAAAGTATATGCGAGCACC 58.438 47.619 0.00 0.00 0.00 5.01
251 252 2.093181 ACCAAAGTATATGCGAGCACCA 60.093 45.455 0.00 0.00 0.00 4.17
252 253 2.545526 CCAAAGTATATGCGAGCACCAG 59.454 50.000 0.00 0.00 0.00 4.00
253 254 2.533266 AAGTATATGCGAGCACCAGG 57.467 50.000 0.00 0.00 0.00 4.45
254 255 1.704641 AGTATATGCGAGCACCAGGA 58.295 50.000 0.00 0.00 0.00 3.86
256 257 3.431415 AGTATATGCGAGCACCAGGATA 58.569 45.455 0.00 0.00 0.00 2.59
257 258 3.445450 AGTATATGCGAGCACCAGGATAG 59.555 47.826 0.00 0.00 0.00 2.08
260 261 0.390492 TGCGAGCACCAGGATAGATG 59.610 55.000 0.00 0.00 0.00 2.90
261 262 0.948141 GCGAGCACCAGGATAGATGC 60.948 60.000 0.00 0.00 38.39 3.91
262 263 0.665670 CGAGCACCAGGATAGATGCG 60.666 60.000 0.00 0.00 42.98 4.73
263 264 0.676184 GAGCACCAGGATAGATGCGA 59.324 55.000 0.00 0.00 42.98 5.10
264 265 0.678395 AGCACCAGGATAGATGCGAG 59.322 55.000 0.00 0.00 42.98 5.03
266 267 1.613925 GCACCAGGATAGATGCGAGTA 59.386 52.381 0.00 0.00 0.00 2.59
267 268 2.232452 GCACCAGGATAGATGCGAGTAT 59.768 50.000 0.00 0.00 0.00 2.12
268 269 3.674682 GCACCAGGATAGATGCGAGTATC 60.675 52.174 0.00 0.00 0.00 2.24
272 273 4.460731 CCAGGATAGATGCGAGTATCAGAA 59.539 45.833 4.15 0.00 33.17 3.02
273 274 5.398169 CAGGATAGATGCGAGTATCAGAAC 58.602 45.833 4.15 0.00 33.17 3.01
277 278 7.448777 AGGATAGATGCGAGTATCAGAACTTAA 59.551 37.037 4.15 0.00 33.17 1.85
279 280 8.804688 ATAGATGCGAGTATCAGAACTTAAAC 57.195 34.615 4.15 0.00 33.17 2.01
280 281 6.043411 AGATGCGAGTATCAGAACTTAAACC 58.957 40.000 4.15 0.00 33.17 3.27
281 282 4.501071 TGCGAGTATCAGAACTTAAACCC 58.499 43.478 0.00 0.00 33.17 4.11
282 283 4.222145 TGCGAGTATCAGAACTTAAACCCT 59.778 41.667 0.00 0.00 33.17 4.34
284 285 5.623824 GCGAGTATCAGAACTTAAACCCTGA 60.624 44.000 0.00 0.00 39.60 3.86
285 286 6.574350 CGAGTATCAGAACTTAAACCCTGAT 58.426 40.000 13.94 13.94 45.25 2.90
286 287 6.477033 CGAGTATCAGAACTTAAACCCTGATG 59.523 42.308 16.87 3.92 43.70 3.07
287 288 6.653989 AGTATCAGAACTTAAACCCTGATGG 58.346 40.000 16.87 0.00 43.70 3.51
300 301 2.269023 CCTGATGGGCTGGGTATATCA 58.731 52.381 0.00 0.00 32.31 2.15
301 302 2.026822 CCTGATGGGCTGGGTATATCAC 60.027 54.545 0.00 0.00 32.31 3.06
303 304 2.639347 TGATGGGCTGGGTATATCACTG 59.361 50.000 0.00 0.00 0.00 3.66
305 306 2.047061 TGGGCTGGGTATATCACTGTC 58.953 52.381 0.00 0.00 0.00 3.51
306 307 1.348036 GGGCTGGGTATATCACTGTCC 59.652 57.143 0.00 0.00 36.10 4.02
307 308 2.047061 GGCTGGGTATATCACTGTCCA 58.953 52.381 0.00 0.00 0.00 4.02
308 309 2.224305 GGCTGGGTATATCACTGTCCAC 60.224 54.545 0.00 0.00 0.00 4.02
309 310 2.224305 GCTGGGTATATCACTGTCCACC 60.224 54.545 0.00 0.00 0.00 4.61
311 312 4.480115 CTGGGTATATCACTGTCCACCTA 58.520 47.826 0.00 0.00 0.00 3.08
312 313 4.886163 TGGGTATATCACTGTCCACCTAA 58.114 43.478 0.00 0.00 0.00 2.69
314 315 4.040095 GGGTATATCACTGTCCACCTAACC 59.960 50.000 0.00 0.00 0.00 2.85
317 318 6.495872 GGTATATCACTGTCCACCTAACCATA 59.504 42.308 0.00 0.00 0.00 2.74
319 320 9.251440 GTATATCACTGTCCACCTAACCATATA 57.749 37.037 0.00 0.00 0.00 0.86
320 321 8.736097 ATATCACTGTCCACCTAACCATATAA 57.264 34.615 0.00 0.00 0.00 0.98
322 323 7.062749 TCACTGTCCACCTAACCATATAATC 57.937 40.000 0.00 0.00 0.00 1.75
323 324 6.613679 TCACTGTCCACCTAACCATATAATCA 59.386 38.462 0.00 0.00 0.00 2.57
324 325 6.706270 CACTGTCCACCTAACCATATAATCAC 59.294 42.308 0.00 0.00 0.00 3.06
326 327 7.092623 ACTGTCCACCTAACCATATAATCACAA 60.093 37.037 0.00 0.00 0.00 3.33
327 328 7.279615 TGTCCACCTAACCATATAATCACAAG 58.720 38.462 0.00 0.00 0.00 3.16
328 329 7.092623 TGTCCACCTAACCATATAATCACAAGT 60.093 37.037 0.00 0.00 0.00 3.16
329 330 7.773690 GTCCACCTAACCATATAATCACAAGTT 59.226 37.037 0.00 0.00 0.00 2.66
330 331 7.773224 TCCACCTAACCATATAATCACAAGTTG 59.227 37.037 0.00 0.00 0.00 3.16
331 332 7.013274 CCACCTAACCATATAATCACAAGTTGG 59.987 40.741 7.96 0.00 0.00 3.77
334 335 8.621286 CCTAACCATATAATCACAAGTTGGTTC 58.379 37.037 7.96 0.00 43.07 3.62
335 336 6.677781 ACCATATAATCACAAGTTGGTTCG 57.322 37.500 7.96 0.00 32.23 3.95
336 337 5.065988 ACCATATAATCACAAGTTGGTTCGC 59.934 40.000 7.96 0.00 32.23 4.70
337 338 5.505654 CCATATAATCACAAGTTGGTTCGCC 60.506 44.000 7.96 0.00 37.92 5.54
347 348 1.960612 TGGTTCGCCAATTTTCCGG 59.039 52.632 0.00 0.00 45.88 5.14
350 351 1.540707 GGTTCGCCAATTTTCCGGTAA 59.459 47.619 0.00 0.00 37.19 2.85
351 352 2.164827 GGTTCGCCAATTTTCCGGTAAT 59.835 45.455 0.00 0.00 37.19 1.89
352 353 3.367600 GGTTCGCCAATTTTCCGGTAATT 60.368 43.478 0.00 6.41 37.19 1.40
354 355 5.450826 GGTTCGCCAATTTTCCGGTAATTAT 60.451 40.000 14.11 0.00 37.19 1.28
355 356 5.176407 TCGCCAATTTTCCGGTAATTATG 57.824 39.130 14.11 10.75 0.00 1.90
357 358 4.973663 CGCCAATTTTCCGGTAATTATGAC 59.026 41.667 14.11 6.36 0.00 3.06
358 359 5.286438 GCCAATTTTCCGGTAATTATGACC 58.714 41.667 14.11 0.00 0.00 4.02
359 360 5.163499 GCCAATTTTCCGGTAATTATGACCA 60.163 40.000 14.11 0.00 36.72 4.02
360 361 6.270064 CCAATTTTCCGGTAATTATGACCAC 58.730 40.000 14.11 0.00 36.72 4.16
369 1506 7.780745 TCCGGTAATTATGACCACCAAATTAAT 59.219 33.333 0.00 0.00 36.72 1.40
418 1555 9.751542 AACGGAATCTAATAGTTATCACTCAAG 57.248 33.333 0.00 0.00 34.06 3.02
477 1614 5.658190 ACCCTATTGTTTTCCCATCAGATTG 59.342 40.000 0.00 0.00 0.00 2.67
523 1660 6.882678 GGTCTTTGGCTAAATACTTGTCCTAA 59.117 38.462 10.21 0.00 0.00 2.69
559 1696 9.060347 ACGCACTAGATTCATCATTGAAATAAT 57.940 29.630 0.00 0.00 44.70 1.28
560 1697 9.326339 CGCACTAGATTCATCATTGAAATAATG 57.674 33.333 0.00 0.00 44.70 1.90
583 1720 5.932303 TGAAGGAGTCTAAAGTTATGTGTGC 59.068 40.000 0.00 0.00 0.00 4.57
621 1758 9.950680 GTGGATTACACTAATCACCATTATTTG 57.049 33.333 0.00 0.00 46.72 2.32
732 1874 9.442047 GTGGCTATTTTCTACAGCAGATTATAT 57.558 33.333 0.00 0.00 37.02 0.86
795 1939 8.594881 AAGTTAGTAAGTCACATGAACTCTTG 57.405 34.615 0.00 0.00 30.72 3.02
845 1989 2.631160 TGTGAAAACGACTCCCACAT 57.369 45.000 0.00 0.00 33.42 3.21
982 2136 3.305131 GCCCTTTTTAGAGTTTTCACCCG 60.305 47.826 0.00 0.00 0.00 5.28
1011 2167 1.003355 CACAGCCATGAACTCCGGT 60.003 57.895 0.00 0.00 0.00 5.28
1017 2173 1.374125 CATGAACTCCGGTGCGACA 60.374 57.895 0.00 0.64 0.00 4.35
1215 2371 1.069823 CCACCTCGATCCTGATTCCTG 59.930 57.143 0.00 0.00 0.00 3.86
1216 2372 2.034878 CACCTCGATCCTGATTCCTGA 58.965 52.381 0.00 0.00 0.00 3.86
1217 2373 2.035632 ACCTCGATCCTGATTCCTGAC 58.964 52.381 0.00 0.00 0.00 3.51
1218 2374 1.342819 CCTCGATCCTGATTCCTGACC 59.657 57.143 0.00 0.00 0.00 4.02
1219 2375 2.034878 CTCGATCCTGATTCCTGACCA 58.965 52.381 0.00 0.00 0.00 4.02
1220 2376 2.432146 CTCGATCCTGATTCCTGACCAA 59.568 50.000 0.00 0.00 0.00 3.67
1221 2377 2.837591 TCGATCCTGATTCCTGACCAAA 59.162 45.455 0.00 0.00 0.00 3.28
1222 2378 3.118629 TCGATCCTGATTCCTGACCAAAG 60.119 47.826 0.00 0.00 0.00 2.77
1223 2379 2.496899 TCCTGATTCCTGACCAAAGC 57.503 50.000 0.00 0.00 0.00 3.51
1224 2380 1.089920 CCTGATTCCTGACCAAAGCG 58.910 55.000 0.00 0.00 0.00 4.68
1225 2381 1.611673 CCTGATTCCTGACCAAAGCGT 60.612 52.381 0.00 0.00 0.00 5.07
1226 2382 2.154462 CTGATTCCTGACCAAAGCGTT 58.846 47.619 0.00 0.00 0.00 4.84
1227 2383 1.879380 TGATTCCTGACCAAAGCGTTG 59.121 47.619 5.29 5.29 34.25 4.10
1465 2621 0.392327 TCCTTTGATGATTGCGCCGA 60.392 50.000 4.18 0.00 0.00 5.54
1637 2818 5.705609 ATACAACTTTAGTTTGTGGCCAG 57.294 39.130 5.11 0.00 35.83 4.85
1666 2847 8.288217 TGTGTTTGTTCAGTTTCTTGTTTAAC 57.712 30.769 0.00 0.00 0.00 2.01
1735 2916 7.390440 ACAGTAGCAATGTTTTGTAAGCTCATA 59.610 33.333 0.00 0.00 35.17 2.15
1778 2959 5.756950 ATAACACTGTATCAACGTGTTCG 57.243 39.130 16.28 0.00 44.47 3.95
1782 2963 2.034939 ACTGTATCAACGTGTTCGACCA 59.965 45.455 0.00 0.00 40.62 4.02
1803 2984 4.212847 CCATATTTCTGGACTGATTCAGCG 59.787 45.833 13.64 0.71 38.69 5.18
1910 3091 3.290710 CATAGCCACAAGGGTTATTGCT 58.709 45.455 0.00 0.00 45.14 3.91
2038 3219 6.702282 GTCCAAGGTATATTTGAGCTACACTC 59.298 42.308 0.00 0.00 46.45 3.51
2141 3323 8.864069 TGTGTTGTATTTTGTGAAGGTAATTG 57.136 30.769 0.00 0.00 0.00 2.32
2299 3481 7.458397 TCAAGTCATTGACCCTGTATTAACTT 58.542 34.615 13.14 0.00 40.54 2.66
2303 3485 9.802039 AGTCATTGACCCTGTATTAACTTTTTA 57.198 29.630 13.14 0.00 32.18 1.52
2501 3684 7.413109 GGTTTAGCTGCTACATAACTTCAACTC 60.413 40.741 17.48 5.72 0.00 3.01
2502 3685 4.508662 AGCTGCTACATAACTTCAACTCC 58.491 43.478 0.00 0.00 0.00 3.85
2503 3686 4.223923 AGCTGCTACATAACTTCAACTCCT 59.776 41.667 0.00 0.00 0.00 3.69
2504 3687 4.938226 GCTGCTACATAACTTCAACTCCTT 59.062 41.667 0.00 0.00 0.00 3.36
2505 3688 6.070767 AGCTGCTACATAACTTCAACTCCTTA 60.071 38.462 0.00 0.00 0.00 2.69
2506 3689 6.763610 GCTGCTACATAACTTCAACTCCTTAT 59.236 38.462 0.00 0.00 0.00 1.73
2507 3690 7.254590 GCTGCTACATAACTTCAACTCCTTATG 60.255 40.741 0.00 0.00 34.22 1.90
2508 3691 6.538742 TGCTACATAACTTCAACTCCTTATGC 59.461 38.462 0.00 0.00 32.15 3.14
2509 3692 6.538742 GCTACATAACTTCAACTCCTTATGCA 59.461 38.462 0.00 0.00 32.15 3.96
2510 3693 7.227512 GCTACATAACTTCAACTCCTTATGCAT 59.772 37.037 3.79 3.79 32.15 3.96
2511 3694 7.944729 ACATAACTTCAACTCCTTATGCATT 57.055 32.000 3.54 0.00 32.15 3.56
2513 3696 9.113838 ACATAACTTCAACTCCTTATGCATTAG 57.886 33.333 3.54 4.82 32.15 1.73
2514 3697 6.442513 AACTTCAACTCCTTATGCATTAGC 57.557 37.500 3.54 0.00 42.57 3.09
2531 3714 7.529880 GCATTAGCATTTGAAAGCAATAACT 57.470 32.000 0.00 0.00 41.58 2.24
2535 3718 8.574251 TTAGCATTTGAAAGCAATAACTCCTA 57.426 30.769 0.00 0.00 33.25 2.94
2540 3754 9.474920 CATTTGAAAGCAATAACTCCTAACAAA 57.525 29.630 0.00 0.00 33.25 2.83
2823 4037 4.810191 AAGAAGTAACAGAGGCACTAGG 57.190 45.455 0.00 0.00 41.55 3.02
3088 4327 3.136626 AGCTTACTTCCAGAGGTGTTTGT 59.863 43.478 0.00 0.00 0.00 2.83
3196 4435 3.331150 CATGCTGGACATTGCAAAATGT 58.669 40.909 1.71 3.88 45.32 2.71
3304 4543 2.416162 CGGTAGCAACTTCTCAGGTCTC 60.416 54.545 0.00 0.00 0.00 3.36
3308 4547 1.269831 GCAACTTCTCAGGTCTCGTGT 60.270 52.381 0.00 0.00 0.00 4.49
3331 4570 1.137282 GTGCCAGCTAACTCTACTCCC 59.863 57.143 0.00 0.00 0.00 4.30
3457 4706 5.434182 TCACATCATACCAATCTGGAACA 57.566 39.130 0.00 0.00 40.96 3.18
3632 4881 5.642686 TGTTTAAACCTTCTTTGTCAACCG 58.357 37.500 15.59 0.00 0.00 4.44
3783 5040 6.627087 TCTCCTTCAGATCCTGTTTATGTT 57.373 37.500 0.00 0.00 32.61 2.71
4069 5330 8.472007 TTTCTTATTTCAAAAGGTGGCTAAGA 57.528 30.769 0.00 0.00 0.00 2.10
4092 5353 7.568349 AGATTTATGCAACTCATTCTGGACTA 58.432 34.615 0.00 0.00 36.63 2.59
4604 5901 6.869913 TGATGCATCCTTTGTGATTTTCTTTC 59.130 34.615 23.67 0.00 0.00 2.62
4611 5908 5.181245 CCTTTGTGATTTTCTTTCTCCGCTA 59.819 40.000 0.00 0.00 0.00 4.26
4612 5909 6.293955 CCTTTGTGATTTTCTTTCTCCGCTAA 60.294 38.462 0.00 0.00 0.00 3.09
4613 5910 6.627395 TTGTGATTTTCTTTCTCCGCTAAA 57.373 33.333 0.00 0.00 0.00 1.85
4745 6045 2.071778 TTTGCCTTCAAGCTTCAGGT 57.928 45.000 18.62 0.00 33.12 4.00
4802 6102 5.938125 GTGGGTACACACTTCATAGTTTGAT 59.062 40.000 21.23 0.00 46.90 2.57
4881 6181 5.012046 TGCAGGTTCTGAGAGTTTAGATGAA 59.988 40.000 0.00 0.00 32.44 2.57
4942 6242 2.493675 GAGAAGGGCCCAATTCAACTTC 59.506 50.000 27.56 16.22 35.72 3.01
5007 6307 4.436183 GCATTTTGAACGGAAGAGCTAGAC 60.436 45.833 0.00 0.00 0.00 2.59
5027 6327 2.428890 ACGAGCAGTTCCTAATCCTCAG 59.571 50.000 0.00 0.00 0.00 3.35
5210 6521 4.136796 TGGAGGATTTTCATAGGAATGCG 58.863 43.478 0.00 0.00 32.76 4.73
5491 7006 7.488187 TTGAATAACATCAGCTATCTTGAGC 57.512 36.000 0.00 0.00 43.19 4.26
5492 7007 6.585416 TGAATAACATCAGCTATCTTGAGCA 58.415 36.000 0.00 0.00 45.43 4.26
5514 7029 4.882427 CAGTACTGCTAGCTACTTAGTCCA 59.118 45.833 17.23 0.00 0.00 4.02
5799 7316 7.504924 AAATGCCGCTATTTTGCTATTACTA 57.495 32.000 0.00 0.00 0.00 1.82
5801 7318 6.480524 TGCCGCTATTTTGCTATTACTATG 57.519 37.500 0.00 0.00 0.00 2.23
5839 7356 5.412904 GGAGATTCCTTTACCACTTTGTCAG 59.587 44.000 0.00 0.00 32.53 3.51
5868 7385 3.065233 GTGTGTCAGTCATTTGCTTGTCA 59.935 43.478 0.00 0.00 0.00 3.58
6095 7612 1.374758 GTGAGTTCTGGGAGGCACG 60.375 63.158 0.00 0.00 0.00 5.34
6130 7647 3.119566 CCTTACCTCTGTGACTAACGTCC 60.120 52.174 0.00 0.00 39.47 4.79
6186 7703 4.103153 TGACCAAGGATGAAGAACTGAACT 59.897 41.667 0.00 0.00 0.00 3.01
6192 7710 4.594920 AGGATGAAGAACTGAACTCCTCAA 59.405 41.667 0.00 0.00 32.17 3.02
6238 7762 6.955364 AGATTGAAGAACTGAAGATCATGGA 58.045 36.000 0.00 0.00 0.00 3.41
6240 7764 4.836825 TGAAGAACTGAAGATCATGGACC 58.163 43.478 0.00 0.00 0.00 4.46
6285 7809 5.425217 TCCAGAAAGTAATCAGCTGACCATA 59.575 40.000 20.97 10.02 0.00 2.74
6332 7858 3.844211 AGTTATACTGGGAAGGAAGCACA 59.156 43.478 0.00 0.00 0.00 4.57
6340 7866 3.826157 TGGGAAGGAAGCACAAAACTATG 59.174 43.478 0.00 0.00 0.00 2.23
6341 7867 4.079253 GGGAAGGAAGCACAAAACTATGA 58.921 43.478 0.00 0.00 0.00 2.15
6342 7868 4.156739 GGGAAGGAAGCACAAAACTATGAG 59.843 45.833 0.00 0.00 0.00 2.90
6343 7869 4.762251 GGAAGGAAGCACAAAACTATGAGT 59.238 41.667 0.00 0.00 0.00 3.41
6344 7870 5.241728 GGAAGGAAGCACAAAACTATGAGTT 59.758 40.000 0.00 0.00 40.80 3.01
6346 7872 7.040686 GGAAGGAAGCACAAAACTATGAGTTTA 60.041 37.037 5.09 0.00 46.78 2.01
6347 7873 7.440523 AGGAAGCACAAAACTATGAGTTTAG 57.559 36.000 5.09 1.17 46.78 1.85
6348 7874 6.998673 AGGAAGCACAAAACTATGAGTTTAGT 59.001 34.615 5.09 0.00 46.78 2.24
6349 7875 7.502561 AGGAAGCACAAAACTATGAGTTTAGTT 59.497 33.333 5.09 0.00 46.78 2.24
6350 7876 8.780249 GGAAGCACAAAACTATGAGTTTAGTTA 58.220 33.333 5.09 0.00 46.78 2.24
6354 7880 9.983804 GCACAAAACTATGAGTTTAGTTATACC 57.016 33.333 5.09 0.00 46.78 2.73
6356 7882 8.876790 ACAAAACTATGAGTTTAGTTATACCGC 58.123 33.333 5.09 0.00 46.78 5.68
6357 7883 7.689953 AAACTATGAGTTTAGTTATACCGCG 57.310 36.000 0.00 0.00 45.75 6.46
6358 7884 6.624352 ACTATGAGTTTAGTTATACCGCGA 57.376 37.500 8.23 0.00 0.00 5.87
6359 7885 7.031226 ACTATGAGTTTAGTTATACCGCGAA 57.969 36.000 8.23 0.00 0.00 4.70
6360 7886 7.137426 ACTATGAGTTTAGTTATACCGCGAAG 58.863 38.462 8.23 0.00 0.00 3.79
6362 7888 4.398988 TGAGTTTAGTTATACCGCGAAGGA 59.601 41.667 8.23 0.00 45.00 3.36
6363 7889 5.105797 TGAGTTTAGTTATACCGCGAAGGAA 60.106 40.000 8.23 0.00 45.00 3.36
6364 7890 5.346522 AGTTTAGTTATACCGCGAAGGAAG 58.653 41.667 8.23 0.00 45.00 3.46
6365 7891 2.220479 AGTTATACCGCGAAGGAAGC 57.780 50.000 8.23 0.00 45.00 3.86
6366 7892 1.479323 AGTTATACCGCGAAGGAAGCA 59.521 47.619 8.23 0.00 45.00 3.91
6367 7893 1.591619 GTTATACCGCGAAGGAAGCAC 59.408 52.381 8.23 0.00 45.00 4.40
6368 7894 0.248743 TATACCGCGAAGGAAGCACG 60.249 55.000 8.23 0.00 45.00 5.34
6369 7895 1.940883 ATACCGCGAAGGAAGCACGA 61.941 55.000 8.23 0.00 45.00 4.35
6370 7896 2.144833 TACCGCGAAGGAAGCACGAA 62.145 55.000 8.23 0.00 45.00 3.85
6371 7897 2.314647 CCGCGAAGGAAGCACGAAA 61.315 57.895 8.23 0.00 45.00 3.46
6372 7898 1.154654 CGCGAAGGAAGCACGAAAC 60.155 57.895 0.00 0.00 34.19 2.78
6373 7899 1.557443 CGCGAAGGAAGCACGAAACT 61.557 55.000 0.00 0.00 34.19 2.66
6374 7900 1.425412 GCGAAGGAAGCACGAAACTA 58.575 50.000 0.00 0.00 34.19 2.24
6448 7976 6.371271 TCAGTTCATTAGTTTCATGAATGCGA 59.629 34.615 9.40 0.00 41.55 5.10
6466 7994 3.254411 TGCGATGAAACATGTGCCTTTTA 59.746 39.130 0.00 0.00 0.00 1.52
6497 8025 1.131303 ACCACAAATCCGGTGAGGGA 61.131 55.000 10.94 0.00 41.52 4.20
6505 8033 1.946984 TCCGGTGAGGGATTACTTGT 58.053 50.000 0.00 0.00 41.52 3.16
6506 8034 1.553248 TCCGGTGAGGGATTACTTGTG 59.447 52.381 0.00 0.00 41.52 3.33
6507 8035 1.406887 CCGGTGAGGGATTACTTGTGG 60.407 57.143 0.00 0.00 35.97 4.17
6508 8036 1.406887 CGGTGAGGGATTACTTGTGGG 60.407 57.143 0.00 0.00 0.00 4.61
6509 8037 1.913419 GGTGAGGGATTACTTGTGGGA 59.087 52.381 0.00 0.00 0.00 4.37
6510 8038 2.509964 GGTGAGGGATTACTTGTGGGAT 59.490 50.000 0.00 0.00 0.00 3.85
6511 8039 3.053619 GGTGAGGGATTACTTGTGGGATT 60.054 47.826 0.00 0.00 0.00 3.01
6512 8040 4.165372 GGTGAGGGATTACTTGTGGGATTA 59.835 45.833 0.00 0.00 0.00 1.75
6513 8041 5.123936 GTGAGGGATTACTTGTGGGATTAC 58.876 45.833 0.00 0.00 0.00 1.89
6514 8042 5.036916 TGAGGGATTACTTGTGGGATTACT 58.963 41.667 0.00 0.00 0.00 2.24
6515 8043 5.491078 TGAGGGATTACTTGTGGGATTACTT 59.509 40.000 0.00 0.00 0.00 2.24
6539 8067 4.763793 CCAAAACAATCACTGGATCTGACT 59.236 41.667 0.00 0.00 31.88 3.41
6550 8078 5.573282 CACTGGATCTGACTTACTGTTTACG 59.427 44.000 0.00 0.00 0.00 3.18
6568 8096 6.816640 TGTTTACGTATTTTCTGAGATGAGGG 59.183 38.462 0.00 0.00 0.00 4.30
6585 8113 7.442655 AGATGAGGGGGATATATTTATGTCCT 58.557 38.462 11.67 0.00 41.91 3.85
6604 8132 2.744202 CCTGTGTGGTTGATTACTGAGC 59.256 50.000 0.00 0.00 0.00 4.26
6624 8152 4.697514 AGCATGCGTCTTATACATGTTCT 58.302 39.130 13.01 0.00 42.50 3.01
6644 8172 6.261381 TGTTCTAAAAGTTAGGTCGCAATGTT 59.739 34.615 0.00 0.00 0.00 2.71
6672 8200 3.129287 GGCAACTAATGTCAGATTGTGGG 59.871 47.826 0.00 0.00 32.41 4.61
6711 8239 7.229707 TGGTATACATAATGTGTAATGTTGGGC 59.770 37.037 5.01 0.00 45.87 5.36
6725 8253 4.217836 TGTTGGGCATTACGTATACCAA 57.782 40.909 13.43 13.43 35.78 3.67
6746 8274 5.345702 CAATGTGCTTATCCTCCACAATTG 58.654 41.667 3.24 3.24 42.10 2.32
6747 8275 4.032960 TGTGCTTATCCTCCACAATTGT 57.967 40.909 4.92 4.92 36.62 2.71
6748 8276 3.758023 TGTGCTTATCCTCCACAATTGTG 59.242 43.478 28.18 28.18 45.23 3.33
6775 8304 5.693104 GTGCAAGATCACACAACAAATCATT 59.307 36.000 8.24 0.00 36.77 2.57
6778 8307 7.086376 GCAAGATCACACAACAAATCATTACT 58.914 34.615 0.00 0.00 0.00 2.24
6782 8311 5.996219 TCACACAACAAATCATTACTTCCG 58.004 37.500 0.00 0.00 0.00 4.30
6786 8315 6.038825 ACACAACAAATCATTACTTCCGACAA 59.961 34.615 0.00 0.00 0.00 3.18
6793 8322 5.661056 TCATTACTTCCGACAATGTCTCT 57.339 39.130 11.92 0.00 32.64 3.10
6796 8325 1.276421 ACTTCCGACAATGTCTCTGGG 59.724 52.381 11.92 5.32 0.00 4.45
6797 8326 1.550524 CTTCCGACAATGTCTCTGGGA 59.449 52.381 11.92 7.66 0.00 4.37
6798 8327 1.866015 TCCGACAATGTCTCTGGGAT 58.134 50.000 11.92 0.00 0.00 3.85
6799 8328 1.757118 TCCGACAATGTCTCTGGGATC 59.243 52.381 11.92 0.00 0.00 3.36
6801 8330 1.759445 CGACAATGTCTCTGGGATCCT 59.241 52.381 12.58 0.00 0.00 3.24
6804 8333 3.706594 GACAATGTCTCTGGGATCCTACA 59.293 47.826 12.58 8.99 0.00 2.74
6805 8334 4.302067 ACAATGTCTCTGGGATCCTACAT 58.698 43.478 12.58 10.78 0.00 2.29
6806 8335 5.467738 ACAATGTCTCTGGGATCCTACATA 58.532 41.667 12.58 0.00 0.00 2.29
6807 8336 5.905331 ACAATGTCTCTGGGATCCTACATAA 59.095 40.000 12.58 0.00 0.00 1.90
6808 8337 6.560304 ACAATGTCTCTGGGATCCTACATAAT 59.440 38.462 12.58 4.00 0.00 1.28
6809 8338 7.072961 ACAATGTCTCTGGGATCCTACATAATT 59.927 37.037 12.58 1.84 0.00 1.40
6810 8339 6.425210 TGTCTCTGGGATCCTACATAATTG 57.575 41.667 12.58 0.00 0.00 2.32
6811 8340 5.221722 TGTCTCTGGGATCCTACATAATTGC 60.222 44.000 12.58 0.00 0.00 3.56
6812 8341 4.907269 TCTCTGGGATCCTACATAATTGCA 59.093 41.667 12.58 0.00 0.00 4.08
6813 8342 5.369404 TCTCTGGGATCCTACATAATTGCAA 59.631 40.000 12.58 0.00 0.00 4.08
6814 8343 6.044754 TCTCTGGGATCCTACATAATTGCAAT 59.955 38.462 12.58 5.99 0.00 3.56
6815 8344 6.613699 TCTGGGATCCTACATAATTGCAATT 58.386 36.000 26.72 26.72 0.00 2.32
6816 8345 7.068702 TCTGGGATCCTACATAATTGCAATTT 58.931 34.615 28.45 14.26 0.00 1.82
6817 8346 7.231317 TCTGGGATCCTACATAATTGCAATTTC 59.769 37.037 28.45 16.80 0.00 2.17
6818 8347 6.267471 TGGGATCCTACATAATTGCAATTTCC 59.733 38.462 28.45 23.50 0.00 3.13
6819 8348 6.267471 GGGATCCTACATAATTGCAATTTCCA 59.733 38.462 28.45 12.50 0.00 3.53
6820 8349 7.038799 GGGATCCTACATAATTGCAATTTCCAT 60.039 37.037 28.45 14.23 0.00 3.41
6831 8360 4.757594 TGCAATTTCCATGAACAATAGCC 58.242 39.130 0.00 0.00 0.00 3.93
6835 8364 6.350906 CAATTTCCATGAACAATAGCCCAAT 58.649 36.000 0.00 0.00 0.00 3.16
6848 8377 1.141254 AGCCCAATGAGCTCAGAGATG 59.859 52.381 22.96 16.61 34.91 2.90
6854 8383 5.011840 CCCAATGAGCTCAGAGATGATCTTA 59.988 44.000 22.96 0.00 35.47 2.10
6863 8392 9.092338 AGCTCAGAGATGATCTTAACAATATCT 57.908 33.333 0.00 0.00 35.47 1.98
6864 8393 9.142515 GCTCAGAGATGATCTTAACAATATCTG 57.857 37.037 0.00 6.72 35.47 2.90
6866 8395 8.868103 TCAGAGATGATCTTAACAATATCTGCT 58.132 33.333 0.00 0.00 35.47 4.24
6874 8403 9.270640 GATCTTAACAATATCTGCTCATTGAGT 57.729 33.333 14.90 0.00 36.00 3.41
6950 8479 0.399454 AGTTGCACTCTGGAGCATGT 59.601 50.000 0.00 0.00 38.69 3.21
6952 8481 0.671472 TTGCACTCTGGAGCATGTCG 60.671 55.000 0.00 0.00 38.69 4.35
6979 8508 4.457257 AGTCTTTTAAGCAGTGGAGATTGC 59.543 41.667 0.00 0.00 40.57 3.56
7072 8601 4.576463 CAGTATGATAGTGGGTCCTTTTGC 59.424 45.833 0.00 0.00 39.69 3.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 8.248253 GGAAATTGTTGAAAGGGATATTTACGT 58.752 33.333 0.00 0.00 0.00 3.57
29 30 8.466798 AGGAAATTGTTGAAAGGGATATTTACG 58.533 33.333 0.00 0.00 0.00 3.18
30 31 9.586435 CAGGAAATTGTTGAAAGGGATATTTAC 57.414 33.333 0.00 0.00 0.00 2.01
31 32 8.757877 CCAGGAAATTGTTGAAAGGGATATTTA 58.242 33.333 0.00 0.00 0.00 1.40
33 34 6.730507 ACCAGGAAATTGTTGAAAGGGATATT 59.269 34.615 0.00 0.00 0.00 1.28
34 35 6.263754 ACCAGGAAATTGTTGAAAGGGATAT 58.736 36.000 0.00 0.00 0.00 1.63
36 37 4.492646 ACCAGGAAATTGTTGAAAGGGAT 58.507 39.130 0.00 0.00 0.00 3.85
37 38 3.922375 ACCAGGAAATTGTTGAAAGGGA 58.078 40.909 0.00 0.00 0.00 4.20
38 39 5.799827 TTACCAGGAAATTGTTGAAAGGG 57.200 39.130 0.00 0.00 0.00 3.95
62 63 8.594881 TGTGTTTGTACTGTGTTCAAATTTTT 57.405 26.923 5.95 0.00 35.84 1.94
63 64 8.594881 TTGTGTTTGTACTGTGTTCAAATTTT 57.405 26.923 5.95 0.00 35.84 1.82
64 65 8.770438 ATTGTGTTTGTACTGTGTTCAAATTT 57.230 26.923 5.95 0.00 35.84 1.82
65 66 7.219917 CGATTGTGTTTGTACTGTGTTCAAATT 59.780 33.333 5.95 0.00 35.84 1.82
66 67 6.690957 CGATTGTGTTTGTACTGTGTTCAAAT 59.309 34.615 5.95 0.00 35.84 2.32
68 69 5.122554 ACGATTGTGTTTGTACTGTGTTCAA 59.877 36.000 0.00 0.00 0.00 2.69
69 70 4.632251 ACGATTGTGTTTGTACTGTGTTCA 59.368 37.500 0.00 0.00 0.00 3.18
70 71 5.151632 ACGATTGTGTTTGTACTGTGTTC 57.848 39.130 0.00 0.00 0.00 3.18
72 73 4.632251 TGAACGATTGTGTTTGTACTGTGT 59.368 37.500 0.00 0.00 30.75 3.72
77 78 9.773670 CGTATATATGAACGATTGTGTTTGTAC 57.226 33.333 2.45 0.00 41.55 2.90
78 79 9.518906 ACGTATATATGAACGATTGTGTTTGTA 57.481 29.630 13.58 0.00 41.55 2.41
79 80 8.325282 CACGTATATATGAACGATTGTGTTTGT 58.675 33.333 13.58 0.00 41.55 2.83
81 82 7.010645 TGCACGTATATATGAACGATTGTGTTT 59.989 33.333 13.58 0.00 41.55 2.83
82 83 6.477360 TGCACGTATATATGAACGATTGTGTT 59.523 34.615 13.58 0.00 41.55 3.32
83 84 5.980715 TGCACGTATATATGAACGATTGTGT 59.019 36.000 13.58 0.00 41.55 3.72
88 89 7.736031 GTGTATGCACGTATATATGAACGAT 57.264 36.000 13.58 1.83 41.55 3.73
103 104 2.034685 TCATAGAGGCGAGTGTATGCAC 59.965 50.000 5.71 5.71 45.57 4.57
105 106 3.053455 GTTCATAGAGGCGAGTGTATGC 58.947 50.000 0.00 0.00 0.00 3.14
108 109 1.065102 GCGTTCATAGAGGCGAGTGTA 59.935 52.381 0.00 0.00 0.00 2.90
109 110 0.179134 GCGTTCATAGAGGCGAGTGT 60.179 55.000 0.00 0.00 0.00 3.55
110 111 0.179137 TGCGTTCATAGAGGCGAGTG 60.179 55.000 0.00 0.00 33.34 3.51
112 113 0.179137 TGTGCGTTCATAGAGGCGAG 60.179 55.000 0.00 0.00 33.34 5.03
113 114 0.457853 GTGTGCGTTCATAGAGGCGA 60.458 55.000 0.00 0.00 33.34 5.54
114 115 0.735978 TGTGTGCGTTCATAGAGGCG 60.736 55.000 0.00 0.00 33.34 5.52
116 117 0.992072 CGTGTGTGCGTTCATAGAGG 59.008 55.000 0.00 0.00 0.00 3.69
119 120 0.179250 GTGCGTGTGTGCGTTCATAG 60.179 55.000 0.00 0.00 37.81 2.23
120 121 0.876342 TGTGCGTGTGTGCGTTCATA 60.876 50.000 0.00 0.00 37.81 2.15
121 122 1.506309 ATGTGCGTGTGTGCGTTCAT 61.506 50.000 0.00 0.00 37.81 2.57
122 123 1.710103 AATGTGCGTGTGTGCGTTCA 61.710 50.000 0.00 0.00 37.81 3.18
123 124 0.991770 GAATGTGCGTGTGTGCGTTC 60.992 55.000 0.00 0.00 37.81 3.95
124 125 1.010125 GAATGTGCGTGTGTGCGTT 60.010 52.632 0.00 0.00 37.81 4.84
126 127 0.179250 GTAGAATGTGCGTGTGTGCG 60.179 55.000 0.00 0.00 37.81 5.34
127 128 0.165944 GGTAGAATGTGCGTGTGTGC 59.834 55.000 0.00 0.00 0.00 4.57
128 129 0.796312 GGGTAGAATGTGCGTGTGTG 59.204 55.000 0.00 0.00 0.00 3.82
130 131 0.036388 AGGGGTAGAATGTGCGTGTG 60.036 55.000 0.00 0.00 0.00 3.82
132 133 2.910688 ATAGGGGTAGAATGTGCGTG 57.089 50.000 0.00 0.00 0.00 5.34
133 134 3.244112 GCTTATAGGGGTAGAATGTGCGT 60.244 47.826 0.00 0.00 0.00 5.24
134 135 3.244078 TGCTTATAGGGGTAGAATGTGCG 60.244 47.826 0.00 0.00 0.00 5.34
135 136 4.351874 TGCTTATAGGGGTAGAATGTGC 57.648 45.455 0.00 0.00 0.00 4.57
136 137 6.212388 AGAGATGCTTATAGGGGTAGAATGTG 59.788 42.308 0.00 0.00 0.00 3.21
137 138 6.212388 CAGAGATGCTTATAGGGGTAGAATGT 59.788 42.308 0.00 0.00 0.00 2.71
138 139 6.438741 TCAGAGATGCTTATAGGGGTAGAATG 59.561 42.308 0.00 0.00 0.00 2.67
139 140 6.565974 TCAGAGATGCTTATAGGGGTAGAAT 58.434 40.000 0.00 0.00 0.00 2.40
140 141 5.965486 TCAGAGATGCTTATAGGGGTAGAA 58.035 41.667 0.00 0.00 0.00 2.10
142 143 5.575157 TCTCAGAGATGCTTATAGGGGTAG 58.425 45.833 0.00 0.00 0.00 3.18
143 144 5.600669 TCTCAGAGATGCTTATAGGGGTA 57.399 43.478 0.00 0.00 0.00 3.69
144 145 4.477536 TCTCAGAGATGCTTATAGGGGT 57.522 45.455 0.00 0.00 0.00 4.95
145 146 6.096705 CAGTATCTCAGAGATGCTTATAGGGG 59.903 46.154 24.31 10.71 43.67 4.79
146 147 6.889177 TCAGTATCTCAGAGATGCTTATAGGG 59.111 42.308 24.31 14.21 43.67 3.53
147 148 7.611467 ACTCAGTATCTCAGAGATGCTTATAGG 59.389 40.741 24.31 14.80 43.67 2.57
150 151 6.149308 CGACTCAGTATCTCAGAGATGCTTAT 59.851 42.308 24.31 14.52 43.67 1.73
154 155 3.058293 CCGACTCAGTATCTCAGAGATGC 60.058 52.174 21.58 19.92 37.56 3.91
155 156 3.058293 GCCGACTCAGTATCTCAGAGATG 60.058 52.174 21.58 8.07 35.37 2.90
156 157 3.146066 GCCGACTCAGTATCTCAGAGAT 58.854 50.000 17.34 17.34 38.70 2.75
157 158 2.092914 TGCCGACTCAGTATCTCAGAGA 60.093 50.000 1.54 1.54 34.44 3.10
158 159 2.293170 TGCCGACTCAGTATCTCAGAG 58.707 52.381 0.00 0.00 36.06 3.35
159 160 2.420058 TGCCGACTCAGTATCTCAGA 57.580 50.000 0.00 0.00 0.00 3.27
160 161 4.457257 TGATATGCCGACTCAGTATCTCAG 59.543 45.833 0.00 0.00 0.00 3.35
161 162 4.398319 TGATATGCCGACTCAGTATCTCA 58.602 43.478 0.00 0.00 0.00 3.27
165 166 5.478332 TCAAGATGATATGCCGACTCAGTAT 59.522 40.000 0.00 0.00 0.00 2.12
166 167 4.827284 TCAAGATGATATGCCGACTCAGTA 59.173 41.667 0.00 0.00 0.00 2.74
167 168 3.638627 TCAAGATGATATGCCGACTCAGT 59.361 43.478 0.00 0.00 0.00 3.41
168 169 4.022503 TCTCAAGATGATATGCCGACTCAG 60.023 45.833 0.00 0.00 0.00 3.35
169 170 3.891366 TCTCAAGATGATATGCCGACTCA 59.109 43.478 0.00 0.00 0.00 3.41
170 171 4.511617 TCTCAAGATGATATGCCGACTC 57.488 45.455 0.00 0.00 0.00 3.36
171 172 5.480642 AATCTCAAGATGATATGCCGACT 57.519 39.130 0.00 0.00 34.49 4.18
172 173 6.551385 AAAATCTCAAGATGATATGCCGAC 57.449 37.500 0.00 0.00 34.49 4.79
174 175 6.366061 TCGTAAAATCTCAAGATGATATGCCG 59.634 38.462 0.00 0.00 34.49 5.69
175 176 7.658179 TCGTAAAATCTCAAGATGATATGCC 57.342 36.000 0.00 0.00 34.49 4.40
180 181 8.954950 ATGACTTCGTAAAATCTCAAGATGAT 57.045 30.769 0.00 0.00 34.49 2.45
182 183 7.333269 CGATGACTTCGTAAAATCTCAAGATG 58.667 38.462 2.72 0.00 43.01 2.90
183 184 7.456684 CGATGACTTCGTAAAATCTCAAGAT 57.543 36.000 2.72 0.00 43.01 2.40
184 185 6.871044 CGATGACTTCGTAAAATCTCAAGA 57.129 37.500 2.72 0.00 43.01 3.02
198 199 0.595310 GAGGCGCCTACGATGACTTC 60.595 60.000 32.97 9.38 43.93 3.01
199 200 1.038130 AGAGGCGCCTACGATGACTT 61.038 55.000 32.97 2.04 43.93 3.01
201 202 0.238817 CTAGAGGCGCCTACGATGAC 59.761 60.000 32.97 15.64 43.93 3.06
202 203 0.179026 ACTAGAGGCGCCTACGATGA 60.179 55.000 32.97 10.07 43.93 2.92
204 205 1.229315 CGACTAGAGGCGCCTACGAT 61.229 60.000 32.97 18.25 43.93 3.73
205 206 1.886313 CGACTAGAGGCGCCTACGA 60.886 63.158 32.97 16.76 43.93 3.43
206 207 1.833434 CTCGACTAGAGGCGCCTACG 61.833 65.000 32.97 26.71 43.20 3.51
207 208 1.943293 CTCGACTAGAGGCGCCTAC 59.057 63.158 32.97 22.56 43.20 3.18
208 209 4.458666 CTCGACTAGAGGCGCCTA 57.541 61.111 32.97 14.96 43.20 3.93
215 216 1.848652 TTGGTTCCCCTCGACTAGAG 58.151 55.000 0.00 0.00 46.44 2.43
217 218 1.900486 ACTTTGGTTCCCCTCGACTAG 59.100 52.381 0.00 0.00 0.00 2.57
222 223 3.139077 GCATATACTTTGGTTCCCCTCG 58.861 50.000 0.00 0.00 0.00 4.63
223 224 3.139077 CGCATATACTTTGGTTCCCCTC 58.861 50.000 0.00 0.00 0.00 4.30
224 225 2.775384 TCGCATATACTTTGGTTCCCCT 59.225 45.455 0.00 0.00 0.00 4.79
225 226 3.139077 CTCGCATATACTTTGGTTCCCC 58.861 50.000 0.00 0.00 0.00 4.81
226 227 2.548480 GCTCGCATATACTTTGGTTCCC 59.452 50.000 0.00 0.00 0.00 3.97
227 228 3.002348 GTGCTCGCATATACTTTGGTTCC 59.998 47.826 0.00 0.00 0.00 3.62
228 229 3.002348 GGTGCTCGCATATACTTTGGTTC 59.998 47.826 0.00 0.00 0.00 3.62
229 230 2.943033 GGTGCTCGCATATACTTTGGTT 59.057 45.455 0.00 0.00 0.00 3.67
230 231 2.093181 TGGTGCTCGCATATACTTTGGT 60.093 45.455 0.00 0.00 0.00 3.67
231 232 2.545526 CTGGTGCTCGCATATACTTTGG 59.454 50.000 0.00 0.00 0.00 3.28
232 233 2.545526 CCTGGTGCTCGCATATACTTTG 59.454 50.000 0.00 0.00 0.00 2.77
233 234 2.434336 TCCTGGTGCTCGCATATACTTT 59.566 45.455 0.00 0.00 0.00 2.66
234 235 2.039418 TCCTGGTGCTCGCATATACTT 58.961 47.619 0.00 0.00 0.00 2.24
235 236 1.704641 TCCTGGTGCTCGCATATACT 58.295 50.000 0.00 0.00 0.00 2.12
236 237 2.751166 ATCCTGGTGCTCGCATATAC 57.249 50.000 0.00 0.00 0.00 1.47
237 238 3.697166 TCTATCCTGGTGCTCGCATATA 58.303 45.455 0.00 0.00 0.00 0.86
238 239 2.529632 TCTATCCTGGTGCTCGCATAT 58.470 47.619 0.00 0.00 0.00 1.78
242 243 0.948141 GCATCTATCCTGGTGCTCGC 60.948 60.000 0.00 0.00 34.85 5.03
243 244 0.665670 CGCATCTATCCTGGTGCTCG 60.666 60.000 4.94 0.00 35.52 5.03
244 245 0.676184 TCGCATCTATCCTGGTGCTC 59.324 55.000 4.94 0.00 35.52 4.26
245 246 0.678395 CTCGCATCTATCCTGGTGCT 59.322 55.000 4.94 0.00 35.52 4.40
246 247 0.390860 ACTCGCATCTATCCTGGTGC 59.609 55.000 0.00 0.00 0.00 5.01
247 248 3.507622 TGATACTCGCATCTATCCTGGTG 59.492 47.826 0.00 0.00 0.00 4.17
248 249 3.761218 CTGATACTCGCATCTATCCTGGT 59.239 47.826 0.00 0.00 0.00 4.00
249 250 4.013050 TCTGATACTCGCATCTATCCTGG 58.987 47.826 0.00 0.00 0.00 4.45
250 251 5.182950 AGTTCTGATACTCGCATCTATCCTG 59.817 44.000 0.00 0.00 0.00 3.86
251 252 5.321102 AGTTCTGATACTCGCATCTATCCT 58.679 41.667 0.00 0.00 0.00 3.24
252 253 5.637006 AGTTCTGATACTCGCATCTATCC 57.363 43.478 0.00 0.00 0.00 2.59
253 254 8.907685 GTTTAAGTTCTGATACTCGCATCTATC 58.092 37.037 0.00 0.00 0.00 2.08
254 255 7.868415 GGTTTAAGTTCTGATACTCGCATCTAT 59.132 37.037 0.00 0.00 0.00 1.98
256 257 6.043411 GGTTTAAGTTCTGATACTCGCATCT 58.957 40.000 0.00 0.00 0.00 2.90
257 258 5.234543 GGGTTTAAGTTCTGATACTCGCATC 59.765 44.000 0.00 0.00 0.00 3.91
260 261 4.567159 CAGGGTTTAAGTTCTGATACTCGC 59.433 45.833 0.00 0.00 0.00 5.03
261 262 5.962433 TCAGGGTTTAAGTTCTGATACTCG 58.038 41.667 0.00 0.00 32.10 4.18
262 263 6.763610 CCATCAGGGTTTAAGTTCTGATACTC 59.236 42.308 12.82 0.00 42.85 2.59
263 264 6.653989 CCATCAGGGTTTAAGTTCTGATACT 58.346 40.000 12.82 0.00 42.85 2.12
264 265 6.927294 CCATCAGGGTTTAAGTTCTGATAC 57.073 41.667 12.82 0.00 42.85 2.24
280 281 2.026822 GTGATATACCCAGCCCATCAGG 60.027 54.545 0.00 0.00 39.47 3.86
281 282 2.909006 AGTGATATACCCAGCCCATCAG 59.091 50.000 0.00 0.00 0.00 2.90
282 283 2.639347 CAGTGATATACCCAGCCCATCA 59.361 50.000 0.00 0.00 0.00 3.07
284 285 2.639839 GACAGTGATATACCCAGCCCAT 59.360 50.000 0.00 0.00 0.00 4.00
285 286 2.047061 GACAGTGATATACCCAGCCCA 58.953 52.381 0.00 0.00 0.00 5.36
286 287 1.348036 GGACAGTGATATACCCAGCCC 59.652 57.143 0.00 0.00 0.00 5.19
287 288 2.047061 TGGACAGTGATATACCCAGCC 58.953 52.381 0.00 0.00 0.00 4.85
288 289 2.224305 GGTGGACAGTGATATACCCAGC 60.224 54.545 0.00 0.00 35.47 4.85
291 292 4.040095 GGTTAGGTGGACAGTGATATACCC 59.960 50.000 0.00 0.00 0.00 3.69
292 293 4.652421 TGGTTAGGTGGACAGTGATATACC 59.348 45.833 0.00 0.00 0.00 2.73
293 294 5.864418 TGGTTAGGTGGACAGTGATATAC 57.136 43.478 0.00 0.00 0.00 1.47
295 296 8.736097 TTATATGGTTAGGTGGACAGTGATAT 57.264 34.615 0.00 0.00 0.00 1.63
296 297 8.736097 ATTATATGGTTAGGTGGACAGTGATA 57.264 34.615 0.00 0.00 0.00 2.15
297 298 7.292356 TGATTATATGGTTAGGTGGACAGTGAT 59.708 37.037 0.00 0.00 0.00 3.06
299 300 6.706270 GTGATTATATGGTTAGGTGGACAGTG 59.294 42.308 0.00 0.00 0.00 3.66
300 301 6.385759 TGTGATTATATGGTTAGGTGGACAGT 59.614 38.462 0.00 0.00 0.00 3.55
301 302 6.826668 TGTGATTATATGGTTAGGTGGACAG 58.173 40.000 0.00 0.00 0.00 3.51
303 304 7.280356 ACTTGTGATTATATGGTTAGGTGGAC 58.720 38.462 0.00 0.00 0.00 4.02
305 306 7.013274 CCAACTTGTGATTATATGGTTAGGTGG 59.987 40.741 0.00 0.00 32.27 4.61
306 307 7.556275 ACCAACTTGTGATTATATGGTTAGGTG 59.444 37.037 0.00 0.00 36.32 4.00
307 308 7.639378 ACCAACTTGTGATTATATGGTTAGGT 58.361 34.615 0.00 0.00 36.32 3.08
308 309 8.519799 AACCAACTTGTGATTATATGGTTAGG 57.480 34.615 5.54 0.00 45.18 2.69
309 310 8.335356 CGAACCAACTTGTGATTATATGGTTAG 58.665 37.037 7.22 4.22 46.52 2.34
312 313 5.065988 GCGAACCAACTTGTGATTATATGGT 59.934 40.000 0.00 0.00 41.23 3.55
314 315 5.065859 TGGCGAACCAACTTGTGATTATATG 59.934 40.000 0.00 0.00 45.37 1.78
317 318 3.417101 TGGCGAACCAACTTGTGATTAT 58.583 40.909 0.00 0.00 45.37 1.28
319 320 1.686355 TGGCGAACCAACTTGTGATT 58.314 45.000 0.00 0.00 45.37 2.57
320 321 3.412722 TGGCGAACCAACTTGTGAT 57.587 47.368 0.00 0.00 45.37 3.06
330 331 1.166989 TACCGGAAAATTGGCGAACC 58.833 50.000 9.46 0.00 0.00 3.62
331 332 2.993449 TTACCGGAAAATTGGCGAAC 57.007 45.000 9.46 0.00 0.00 3.95
334 335 4.973663 GTCATAATTACCGGAAAATTGGCG 59.026 41.667 21.84 13.48 0.00 5.69
335 336 5.163499 TGGTCATAATTACCGGAAAATTGGC 60.163 40.000 21.84 12.83 40.08 4.52
336 337 6.270064 GTGGTCATAATTACCGGAAAATTGG 58.730 40.000 21.84 16.02 40.08 3.16
337 338 6.127591 TGGTGGTCATAATTACCGGAAAATTG 60.128 38.462 21.84 12.07 40.08 2.32
338 339 5.952947 TGGTGGTCATAATTACCGGAAAATT 59.047 36.000 9.46 15.96 40.08 1.82
339 340 5.511363 TGGTGGTCATAATTACCGGAAAAT 58.489 37.500 9.46 4.48 40.08 1.82
340 341 4.919793 TGGTGGTCATAATTACCGGAAAA 58.080 39.130 9.46 1.61 40.08 2.29
341 342 4.571369 TGGTGGTCATAATTACCGGAAA 57.429 40.909 9.46 0.00 40.08 3.13
342 343 4.571369 TTGGTGGTCATAATTACCGGAA 57.429 40.909 9.46 0.00 40.08 4.30
343 344 4.571369 TTTGGTGGTCATAATTACCGGA 57.429 40.909 9.46 0.00 40.08 5.14
344 345 5.845391 AATTTGGTGGTCATAATTACCGG 57.155 39.130 0.00 0.00 40.08 5.28
345 346 9.458374 GAATTAATTTGGTGGTCATAATTACCG 57.542 33.333 1.43 0.00 40.08 4.02
346 347 9.458374 CGAATTAATTTGGTGGTCATAATTACC 57.542 33.333 7.47 0.00 37.53 2.85
350 351 9.403583 ACTACGAATTAATTTGGTGGTCATAAT 57.596 29.630 17.84 0.00 33.51 1.28
351 352 8.795842 ACTACGAATTAATTTGGTGGTCATAA 57.204 30.769 17.84 0.00 33.51 1.90
352 353 9.316730 GTACTACGAATTAATTTGGTGGTCATA 57.683 33.333 18.75 6.31 38.41 2.15
354 355 7.118101 GTGTACTACGAATTAATTTGGTGGTCA 59.882 37.037 18.75 15.05 38.41 4.02
355 356 7.118101 TGTGTACTACGAATTAATTTGGTGGTC 59.882 37.037 18.75 13.54 38.41 4.02
357 358 7.118680 AGTGTGTACTACGAATTAATTTGGTGG 59.881 37.037 17.84 14.71 34.74 4.61
358 359 8.025243 AGTGTGTACTACGAATTAATTTGGTG 57.975 34.615 17.84 12.37 34.74 4.17
359 360 8.611654 AAGTGTGTACTACGAATTAATTTGGT 57.388 30.769 17.84 13.53 35.69 3.67
360 361 9.887406 AAAAGTGTGTACTACGAATTAATTTGG 57.113 29.630 17.84 8.96 35.69 3.28
369 1506 7.512887 CGTTTCGTAAAAAGTGTGTACTACGAA 60.513 37.037 14.64 14.64 45.21 3.85
389 1526 8.798748 AGTGATAACTATTAGATTCCGTTTCG 57.201 34.615 0.00 0.00 0.00 3.46
392 1529 9.751542 CTTGAGTGATAACTATTAGATTCCGTT 57.248 33.333 0.00 0.00 0.00 4.44
442 1579 6.070366 GGAAAACAATAGGGTAGTACAGACCT 60.070 42.308 14.63 11.03 37.13 3.85
523 1660 6.127810 TGAATCTAGTGCGTTAGATTACGT 57.872 37.500 17.54 0.00 45.67 3.57
559 1696 5.932303 GCACACATAACTTTAGACTCCTTCA 59.068 40.000 0.00 0.00 0.00 3.02
560 1697 6.166982 AGCACACATAACTTTAGACTCCTTC 58.833 40.000 0.00 0.00 0.00 3.46
561 1698 6.115448 AGCACACATAACTTTAGACTCCTT 57.885 37.500 0.00 0.00 0.00 3.36
562 1699 5.746990 AGCACACATAACTTTAGACTCCT 57.253 39.130 0.00 0.00 0.00 3.69
563 1700 5.122396 CCAAGCACACATAACTTTAGACTCC 59.878 44.000 0.00 0.00 0.00 3.85
583 1720 5.679734 GTGTAATCCACTATGATGCCAAG 57.320 43.478 0.00 0.00 41.11 3.61
795 1939 8.272584 ATCCCTTAGATACTGCATTATTGCGTC 61.273 40.741 5.22 1.80 42.16 5.19
810 1954 6.700081 CGTTTTCACATTCGATCCCTTAGATA 59.300 38.462 0.00 0.00 34.42 1.98
821 1965 2.224090 TGGGAGTCGTTTTCACATTCGA 60.224 45.455 0.00 0.00 0.00 3.71
845 1989 0.850100 TTCTTGTTGGGCTCCTTCCA 59.150 50.000 0.00 0.00 0.00 3.53
1125 2281 4.432741 GAGGTGGGCTTGGAGGGC 62.433 72.222 0.00 0.00 0.00 5.19
1164 2320 1.477685 AAAGGAGGAAGCGTTCGGGA 61.478 55.000 0.00 0.00 0.00 5.14
1232 2388 0.032815 CCACGCCCGGTCAAATTTTT 59.967 50.000 0.00 0.00 0.00 1.94
1233 2389 1.663173 CCACGCCCGGTCAAATTTT 59.337 52.632 0.00 0.00 0.00 1.82
1234 2390 2.272447 CCCACGCCCGGTCAAATTT 61.272 57.895 0.00 0.00 0.00 1.82
1235 2391 2.675075 CCCACGCCCGGTCAAATT 60.675 61.111 0.00 0.00 0.00 1.82
1236 2392 2.987355 AAACCCACGCCCGGTCAAAT 62.987 55.000 0.00 0.00 31.48 2.32
1241 2397 4.509580 ACAAAACCCACGCCCGGT 62.510 61.111 0.00 0.00 34.07 5.28
1247 2403 0.889186 CCCCTCTGACAAAACCCACG 60.889 60.000 0.00 0.00 0.00 4.94
1465 2621 5.531634 TCCGAACACTAACTAAACGACAAT 58.468 37.500 0.00 0.00 0.00 2.71
1630 2811 0.104671 ACAAACACATTGCTGGCCAC 59.895 50.000 0.00 0.00 43.13 5.01
1633 2814 2.129607 CTGAACAAACACATTGCTGGC 58.870 47.619 0.00 0.00 43.13 4.85
1637 2818 5.348451 ACAAGAAACTGAACAAACACATTGC 59.652 36.000 0.00 0.00 43.13 3.56
1666 2847 3.870274 TCCAAGTCTGAAGCATCATCAG 58.130 45.455 0.00 0.00 44.53 2.90
1778 2959 5.238214 GCTGAATCAGTCCAGAAATATGGTC 59.762 44.000 12.29 0.00 35.44 4.02
1782 2963 4.141620 ACCGCTGAATCAGTCCAGAAATAT 60.142 41.667 12.29 0.00 33.43 1.28
2038 3219 7.491696 GGTTAGTTGGAGCATACTGTAACTTAG 59.508 40.741 0.00 0.00 33.26 2.18
2506 3689 7.098477 AGTTATTGCTTTCAAATGCTAATGCA 58.902 30.769 0.00 0.00 42.91 3.96
2507 3690 7.254218 GGAGTTATTGCTTTCAAATGCTAATGC 60.254 37.037 2.82 0.00 35.56 3.56
2508 3691 7.977853 AGGAGTTATTGCTTTCAAATGCTAATG 59.022 33.333 2.82 0.00 35.56 1.90
2509 3692 8.071177 AGGAGTTATTGCTTTCAAATGCTAAT 57.929 30.769 2.82 4.00 35.56 1.73
2510 3693 7.466746 AGGAGTTATTGCTTTCAAATGCTAA 57.533 32.000 2.82 0.00 35.56 3.09
2511 3694 8.458843 GTTAGGAGTTATTGCTTTCAAATGCTA 58.541 33.333 2.82 0.00 35.56 3.49
2512 3695 5.990120 AGGAGTTATTGCTTTCAAATGCT 57.010 34.783 2.82 0.00 35.56 3.79
2513 3696 7.090173 TGTTAGGAGTTATTGCTTTCAAATGC 58.910 34.615 0.00 0.00 35.56 3.56
2514 3697 9.474920 TTTGTTAGGAGTTATTGCTTTCAAATG 57.525 29.630 0.00 0.00 35.56 2.32
2517 3700 9.474920 CATTTTGTTAGGAGTTATTGCTTTCAA 57.525 29.630 0.00 0.00 36.51 2.69
2518 3701 8.087750 CCATTTTGTTAGGAGTTATTGCTTTCA 58.912 33.333 0.00 0.00 0.00 2.69
2519 3702 8.303876 TCCATTTTGTTAGGAGTTATTGCTTTC 58.696 33.333 0.00 0.00 0.00 2.62
2520 3703 8.189119 TCCATTTTGTTAGGAGTTATTGCTTT 57.811 30.769 0.00 0.00 0.00 3.51
2521 3704 7.775053 TCCATTTTGTTAGGAGTTATTGCTT 57.225 32.000 0.00 0.00 0.00 3.91
2522 3705 7.961326 ATCCATTTTGTTAGGAGTTATTGCT 57.039 32.000 0.00 0.00 34.40 3.91
2523 3706 7.010460 GCAATCCATTTTGTTAGGAGTTATTGC 59.990 37.037 0.00 0.00 36.88 3.56
2524 3707 8.034215 TGCAATCCATTTTGTTAGGAGTTATTG 58.966 33.333 0.00 0.00 34.40 1.90
2525 3708 8.133024 TGCAATCCATTTTGTTAGGAGTTATT 57.867 30.769 0.00 0.00 34.40 1.40
2526 3709 7.716799 TGCAATCCATTTTGTTAGGAGTTAT 57.283 32.000 0.00 0.00 34.40 1.89
2527 3710 7.531857 TTGCAATCCATTTTGTTAGGAGTTA 57.468 32.000 0.00 0.00 34.40 2.24
2528 3711 6.418057 TTGCAATCCATTTTGTTAGGAGTT 57.582 33.333 0.00 0.00 34.40 3.01
2529 3712 6.610075 ATTGCAATCCATTTTGTTAGGAGT 57.390 33.333 5.99 0.00 34.40 3.85
2530 3713 7.098477 TGAATTGCAATCCATTTTGTTAGGAG 58.902 34.615 13.38 0.00 34.40 3.69
2531 3714 7.002250 TGAATTGCAATCCATTTTGTTAGGA 57.998 32.000 13.38 0.00 35.59 2.94
2535 3718 7.769220 TGTTTTGAATTGCAATCCATTTTGTT 58.231 26.923 13.38 0.00 36.15 2.83
2666 3880 2.811101 CAAGGCGGTGGCAAAACA 59.189 55.556 0.00 0.00 42.47 2.83
2723 3937 0.529773 CGATAGCCAAACGCCTAGCA 60.530 55.000 0.00 0.00 38.78 3.49
2823 4037 5.529060 CCCCTAACAGTAAGCATGAGAATTC 59.471 44.000 0.00 0.00 0.00 2.17
3088 4327 7.439381 ACAAAATTAACTTCTAGGAGTCGACA 58.561 34.615 19.50 0.00 0.00 4.35
3196 4435 7.234166 TCCAGTCTTGATATTGCATCATAGAGA 59.766 37.037 0.00 0.00 0.00 3.10
3304 4543 0.944386 AGTTAGCTGGCACAAACACG 59.056 50.000 0.00 0.00 38.70 4.49
3308 4547 3.306780 GGAGTAGAGTTAGCTGGCACAAA 60.307 47.826 0.00 0.00 38.70 2.83
3457 4706 7.973944 GTCAAAAACTTGAAGACTTGGTTACAT 59.026 33.333 0.00 0.00 32.04 2.29
3539 4788 3.845781 AGTCACATCAGTTTGGTCAGT 57.154 42.857 0.00 0.00 0.00 3.41
3632 4881 4.483476 ACTTTGTGCTTTCCGTGATAAC 57.517 40.909 0.00 0.00 0.00 1.89
3713 4970 5.655394 ACATAAGAGGTAGCTCCCATCATA 58.345 41.667 18.14 3.53 36.75 2.15
4069 5330 7.831193 AGTTAGTCCAGAATGAGTTGCATAAAT 59.169 33.333 0.00 0.00 39.69 1.40
4092 5353 8.585018 CCTTGAGGAAAATGGTAAATAACAGTT 58.415 33.333 0.00 0.00 37.39 3.16
4612 5909 4.870123 TGCAGGTAAGCATCACATTTTT 57.130 36.364 0.00 0.00 40.11 1.94
4745 6045 3.958147 TCTATGCATACGTCCCTTCTTGA 59.042 43.478 1.16 0.00 0.00 3.02
4802 6102 1.892819 GCCACCACAGCTAGCTCTCA 61.893 60.000 16.15 0.00 0.00 3.27
4854 6154 0.320247 AACTCTCAGAACCTGCAGCG 60.320 55.000 8.66 4.27 0.00 5.18
4923 6223 2.232208 CAGAAGTTGAATTGGGCCCTTC 59.768 50.000 25.70 19.82 0.00 3.46
5007 6307 2.428890 ACTGAGGATTAGGAACTGCTCG 59.571 50.000 0.00 0.00 41.52 5.03
5027 6327 7.201496 CCATCAAAGCAATTAGAAATGCAAGAC 60.201 37.037 5.18 0.00 44.95 3.01
5319 6636 4.098807 GGAAGGAGAGTAGCTTTGACTAGG 59.901 50.000 0.00 0.00 0.00 3.02
5429 6746 8.877601 GGTGTTAGTCCACTAGTTACAGGAACT 61.878 44.444 2.77 2.77 40.54 3.01
5491 7006 4.882427 TGGACTAAGTAGCTAGCAGTACTG 59.118 45.833 18.93 18.93 29.71 2.74
5492 7007 5.113446 TGGACTAAGTAGCTAGCAGTACT 57.887 43.478 18.83 13.83 0.00 2.73
5758 7275 2.470983 TTTTAAGCAGGCAAATGGGC 57.529 45.000 0.00 0.00 43.80 5.36
5799 7316 0.463295 CTCCGGATGCTTGTGCTCAT 60.463 55.000 3.57 0.00 40.48 2.90
5801 7318 0.179062 ATCTCCGGATGCTTGTGCTC 60.179 55.000 3.57 0.00 40.48 4.26
5839 7356 2.032681 GACTGACACACCTGGCCC 59.967 66.667 0.00 0.00 0.00 5.80
5868 7385 3.384168 TCCACTACAATGAGGCATAGGT 58.616 45.455 0.00 0.00 0.00 3.08
5954 7471 1.973281 CACCAGCTCCGGCAATTGT 60.973 57.895 7.40 0.00 41.70 2.71
5989 7506 1.795872 CGTAATGAACAGGCGTCAACA 59.204 47.619 0.00 0.00 0.00 3.33
6044 7561 2.605837 TCAAGTAAACCACGAGCACA 57.394 45.000 0.00 0.00 0.00 4.57
6095 7612 5.119694 CAGAGGTAAGGATTGGAGTTAAGC 58.880 45.833 0.00 0.00 0.00 3.09
6130 7647 1.001406 AGGCGTTTGAGTCTTCTGAGG 59.999 52.381 0.00 0.00 0.00 3.86
6165 7682 4.505742 GGAGTTCAGTTCTTCATCCTTGGT 60.506 45.833 0.00 0.00 0.00 3.67
6216 7734 5.884792 GGTCCATGATCTTCAGTTCTTCAAT 59.115 40.000 0.00 0.00 0.00 2.57
6217 7735 5.221904 TGGTCCATGATCTTCAGTTCTTCAA 60.222 40.000 0.00 0.00 0.00 2.69
6238 7762 0.107703 CGGTGCATCTGGTGTATGGT 60.108 55.000 0.00 0.00 0.00 3.55
6240 7764 1.935873 CTTCGGTGCATCTGGTGTATG 59.064 52.381 0.00 0.00 0.00 2.39
6318 7844 2.452600 AGTTTTGTGCTTCCTTCCCA 57.547 45.000 0.00 0.00 0.00 4.37
6332 7858 7.975616 TCGCGGTATAACTAAACTCATAGTTTT 59.024 33.333 6.13 1.27 45.38 2.43
6340 7866 4.925068 TCCTTCGCGGTATAACTAAACTC 58.075 43.478 6.13 0.00 0.00 3.01
6341 7867 4.989279 TCCTTCGCGGTATAACTAAACT 57.011 40.909 6.13 0.00 0.00 2.66
6342 7868 4.026228 GCTTCCTTCGCGGTATAACTAAAC 60.026 45.833 6.13 0.00 0.00 2.01
6343 7869 4.114794 GCTTCCTTCGCGGTATAACTAAA 58.885 43.478 6.13 0.00 0.00 1.85
6344 7870 3.130869 TGCTTCCTTCGCGGTATAACTAA 59.869 43.478 6.13 0.00 0.00 2.24
6345 7871 2.689471 TGCTTCCTTCGCGGTATAACTA 59.311 45.455 6.13 0.00 0.00 2.24
6346 7872 1.479323 TGCTTCCTTCGCGGTATAACT 59.521 47.619 6.13 0.00 0.00 2.24
6347 7873 1.591619 GTGCTTCCTTCGCGGTATAAC 59.408 52.381 6.13 0.00 0.00 1.89
6348 7874 1.799917 CGTGCTTCCTTCGCGGTATAA 60.800 52.381 6.13 0.00 34.22 0.98
6349 7875 0.248743 CGTGCTTCCTTCGCGGTATA 60.249 55.000 6.13 0.00 34.22 1.47
6350 7876 1.518572 CGTGCTTCCTTCGCGGTAT 60.519 57.895 6.13 0.00 34.22 2.73
6351 7877 2.126228 CGTGCTTCCTTCGCGGTA 60.126 61.111 6.13 0.00 34.22 4.02
6352 7878 2.981977 TTTCGTGCTTCCTTCGCGGT 62.982 55.000 6.13 0.00 37.94 5.68
6353 7879 2.314647 TTTCGTGCTTCCTTCGCGG 61.315 57.895 6.13 0.00 37.94 6.46
6354 7880 1.154654 GTTTCGTGCTTCCTTCGCG 60.155 57.895 0.00 0.00 38.63 5.87
6355 7881 1.425412 TAGTTTCGTGCTTCCTTCGC 58.575 50.000 0.00 0.00 0.00 4.70
6356 7882 3.250744 TCATAGTTTCGTGCTTCCTTCG 58.749 45.455 0.00 0.00 0.00 3.79
6357 7883 4.246458 ACTCATAGTTTCGTGCTTCCTTC 58.754 43.478 0.00 0.00 0.00 3.46
6358 7884 4.273148 ACTCATAGTTTCGTGCTTCCTT 57.727 40.909 0.00 0.00 0.00 3.36
6359 7885 3.963428 ACTCATAGTTTCGTGCTTCCT 57.037 42.857 0.00 0.00 0.00 3.36
6360 7886 5.638234 ACTAAACTCATAGTTTCGTGCTTCC 59.362 40.000 8.24 0.00 44.47 3.46
6361 7887 6.707599 ACTAAACTCATAGTTTCGTGCTTC 57.292 37.500 8.24 0.00 44.47 3.86
6362 7888 8.773404 ATAACTAAACTCATAGTTTCGTGCTT 57.227 30.769 8.24 0.00 44.47 3.91
6363 7889 9.298774 GTATAACTAAACTCATAGTTTCGTGCT 57.701 33.333 8.24 3.65 44.47 4.40
6364 7890 9.298774 AGTATAACTAAACTCATAGTTTCGTGC 57.701 33.333 8.24 2.38 44.47 5.34
6366 7892 9.798994 CCAGTATAACTAAACTCATAGTTTCGT 57.201 33.333 8.24 6.16 44.47 3.85
6367 7893 9.245962 CCCAGTATAACTAAACTCATAGTTTCG 57.754 37.037 8.24 5.57 44.47 3.46
6371 7897 8.925338 CCTTCCCAGTATAACTAAACTCATAGT 58.075 37.037 0.00 0.00 37.73 2.12
6372 7898 9.144298 TCCTTCCCAGTATAACTAAACTCATAG 57.856 37.037 0.00 0.00 0.00 2.23
6373 7899 9.496710 TTCCTTCCCAGTATAACTAAACTCATA 57.503 33.333 0.00 0.00 0.00 2.15
6374 7900 7.989947 TCCTTCCCAGTATAACTAAACTCAT 57.010 36.000 0.00 0.00 0.00 2.90
6437 7965 4.664188 CACATGTTTCATCGCATTCATGA 58.336 39.130 0.00 0.00 36.95 3.07
6448 7976 7.238486 TGGTTATAAAAGGCACATGTTTCAT 57.762 32.000 0.00 0.00 0.00 2.57
6466 7994 5.454755 CCGGATTTGTGGTAGAGATGGTTAT 60.455 44.000 0.00 0.00 0.00 1.89
6508 8036 7.214467 TCCAGTGATTGTTTTGGAAGTAATC 57.786 36.000 0.00 0.00 36.81 1.75
6509 8037 7.671398 AGATCCAGTGATTGTTTTGGAAGTAAT 59.329 33.333 0.00 0.00 42.55 1.89
6510 8038 7.004086 AGATCCAGTGATTGTTTTGGAAGTAA 58.996 34.615 0.00 0.00 42.55 2.24
6511 8039 6.430925 CAGATCCAGTGATTGTTTTGGAAGTA 59.569 38.462 0.00 0.00 42.55 2.24
6512 8040 5.242393 CAGATCCAGTGATTGTTTTGGAAGT 59.758 40.000 0.00 0.00 42.55 3.01
6513 8041 5.474532 TCAGATCCAGTGATTGTTTTGGAAG 59.525 40.000 0.00 0.00 42.55 3.46
6514 8042 5.241506 GTCAGATCCAGTGATTGTTTTGGAA 59.758 40.000 0.00 0.00 42.55 3.53
6515 8043 4.761739 GTCAGATCCAGTGATTGTTTTGGA 59.238 41.667 0.00 0.00 43.36 3.53
6518 8046 7.173907 CAGTAAGTCAGATCCAGTGATTGTTTT 59.826 37.037 0.00 0.00 0.00 2.43
6539 8067 9.917129 TCATCTCAGAAAATACGTAAACAGTAA 57.083 29.630 0.00 0.00 0.00 2.24
6550 8078 5.574970 ATCCCCCTCATCTCAGAAAATAC 57.425 43.478 0.00 0.00 0.00 1.89
6568 8096 6.779860 ACCACACAGGACATAAATATATCCC 58.220 40.000 0.00 0.00 41.22 3.85
6585 8113 3.483808 TGCTCAGTAATCAACCACACA 57.516 42.857 0.00 0.00 0.00 3.72
6604 8132 8.604035 ACTTTTAGAACATGTATAAGACGCATG 58.396 33.333 0.00 0.00 43.84 4.06
6624 8152 5.278561 CCCAAACATTGCGACCTAACTTTTA 60.279 40.000 0.00 0.00 0.00 1.52
6644 8172 2.642311 TCTGACATTAGTTGCCTCCCAA 59.358 45.455 0.00 0.00 0.00 4.12
6656 8184 3.785325 TCATCCCCCACAATCTGACATTA 59.215 43.478 0.00 0.00 0.00 1.90
6658 8186 2.092212 GTCATCCCCCACAATCTGACAT 60.092 50.000 0.00 0.00 34.57 3.06
6711 8239 7.602644 AGGATAAGCACATTGGTATACGTAATG 59.397 37.037 20.88 20.88 37.71 1.90
6725 8253 4.400251 CACAATTGTGGAGGATAAGCACAT 59.600 41.667 27.60 0.00 42.10 3.21
6767 8295 7.065085 AGAGACATTGTCGGAAGTAATGATTTG 59.935 37.037 11.01 0.00 38.83 2.32
6770 8298 6.045318 CAGAGACATTGTCGGAAGTAATGAT 58.955 40.000 11.01 5.88 38.83 2.45
6775 8304 2.496070 CCCAGAGACATTGTCGGAAGTA 59.504 50.000 11.01 0.00 37.67 2.24
6778 8307 1.639722 TCCCAGAGACATTGTCGGAA 58.360 50.000 11.01 0.00 37.67 4.30
6782 8311 3.706594 TGTAGGATCCCAGAGACATTGTC 59.293 47.826 8.55 8.82 0.00 3.18
6786 8315 6.521427 GCAATTATGTAGGATCCCAGAGACAT 60.521 42.308 8.55 12.56 0.00 3.06
6793 8322 6.267471 GGAAATTGCAATTATGTAGGATCCCA 59.733 38.462 24.35 0.00 0.00 4.37
6796 8325 8.579006 TCATGGAAATTGCAATTATGTAGGATC 58.421 33.333 24.35 14.86 0.00 3.36
6797 8326 8.481492 TCATGGAAATTGCAATTATGTAGGAT 57.519 30.769 24.35 6.76 0.00 3.24
6798 8327 7.894753 TCATGGAAATTGCAATTATGTAGGA 57.105 32.000 24.35 14.75 0.00 2.94
6799 8328 7.980662 TGTTCATGGAAATTGCAATTATGTAGG 59.019 33.333 24.35 12.92 0.00 3.18
6801 8330 9.887629 ATTGTTCATGGAAATTGCAATTATGTA 57.112 25.926 24.35 14.91 0.00 2.29
6804 8333 9.048446 GCTATTGTTCATGGAAATTGCAATTAT 57.952 29.630 24.35 12.09 33.89 1.28
6805 8334 7.495279 GGCTATTGTTCATGGAAATTGCAATTA 59.505 33.333 24.35 10.21 34.90 1.40
6806 8335 6.316890 GGCTATTGTTCATGGAAATTGCAATT 59.683 34.615 18.99 18.99 34.90 2.32
6807 8336 5.818857 GGCTATTGTTCATGGAAATTGCAAT 59.181 36.000 5.99 5.99 34.90 3.56
6808 8337 5.177326 GGCTATTGTTCATGGAAATTGCAA 58.823 37.500 0.00 0.00 34.90 4.08
6809 8338 4.382901 GGGCTATTGTTCATGGAAATTGCA 60.383 41.667 16.99 0.00 34.90 4.08
6810 8339 4.122046 GGGCTATTGTTCATGGAAATTGC 58.878 43.478 11.10 11.10 33.24 3.56
6811 8340 5.341872 TGGGCTATTGTTCATGGAAATTG 57.658 39.130 0.00 0.00 0.00 2.32
6812 8341 6.156602 TCATTGGGCTATTGTTCATGGAAATT 59.843 34.615 0.00 0.00 0.00 1.82
6813 8342 5.662208 TCATTGGGCTATTGTTCATGGAAAT 59.338 36.000 0.00 0.00 0.00 2.17
6814 8343 5.022122 TCATTGGGCTATTGTTCATGGAAA 58.978 37.500 0.00 0.00 0.00 3.13
6815 8344 4.608269 TCATTGGGCTATTGTTCATGGAA 58.392 39.130 0.00 0.00 0.00 3.53
6816 8345 4.209538 CTCATTGGGCTATTGTTCATGGA 58.790 43.478 0.00 0.00 0.00 3.41
6817 8346 3.243636 GCTCATTGGGCTATTGTTCATGG 60.244 47.826 0.00 0.00 0.00 3.66
6818 8347 3.635373 AGCTCATTGGGCTATTGTTCATG 59.365 43.478 9.91 0.00 38.36 3.07
6819 8348 3.887716 GAGCTCATTGGGCTATTGTTCAT 59.112 43.478 11.91 0.00 40.40 2.57
6820 8349 3.282021 GAGCTCATTGGGCTATTGTTCA 58.718 45.455 11.91 0.00 40.40 3.18
6831 8360 4.610605 AGATCATCTCTGAGCTCATTGG 57.389 45.455 18.63 10.36 44.70 3.16
6848 8377 9.270640 ACTCAATGAGCAGATATTGTTAAGATC 57.729 33.333 10.62 0.00 36.09 2.75
6934 8463 1.079612 CGACATGCTCCAGAGTGCA 60.080 57.895 0.00 0.00 45.79 4.57
6950 8479 4.021456 TCCACTGCTTAAAAGACTGATCGA 60.021 41.667 0.00 0.00 0.00 3.59
6952 8481 5.482908 TCTCCACTGCTTAAAAGACTGATC 58.517 41.667 0.00 0.00 0.00 2.92
6979 8508 5.749588 TCAAAACAATGTCAACATGCTTCAG 59.250 36.000 0.00 0.00 36.56 3.02
6980 8509 5.658468 TCAAAACAATGTCAACATGCTTCA 58.342 33.333 0.00 0.00 36.56 3.02
6988 8517 6.421501 TGCAATGATCTCAAAACAATGTCAAC 59.578 34.615 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.