Multiple sequence alignment - TraesCS4D01G107600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G107600 chr4D 100.000 2986 0 0 1 2986 85731745 85734730 0.000000e+00 5515
1 TraesCS4D01G107600 chr4D 96.129 155 6 0 2832 2986 85745067 85744913 1.370000e-63 254
2 TraesCS4D01G107600 chr4D 96.711 152 5 0 2835 2986 503681796 503681947 1.370000e-63 254
3 TraesCS4D01G107600 chr4D 94.410 161 7 2 2827 2986 115068686 115068845 2.300000e-61 246
4 TraesCS4D01G107600 chr4D 97.753 89 2 0 2750 2838 85745065 85745153 1.430000e-33 154
5 TraesCS4D01G107600 chr7D 98.999 2498 25 0 1 2498 184519266 184516769 0.000000e+00 4475
6 TraesCS4D01G107600 chr6D 98.360 2500 25 1 1 2500 460763885 460766368 0.000000e+00 4375
7 TraesCS4D01G107600 chr6D 92.274 1126 84 3 39 1162 19721043 19722167 0.000000e+00 1594
8 TraesCS4D01G107600 chr6D 97.386 153 4 0 2834 2986 8984487 8984335 8.210000e-66 261
9 TraesCS4D01G107600 chr5B 96.727 2505 54 4 1 2500 485818102 485815621 0.000000e+00 4146
10 TraesCS4D01G107600 chr3D 94.242 2501 116 18 1 2497 363068256 363070732 0.000000e+00 3795
11 TraesCS4D01G107600 chr3D 98.982 2062 20 1 1 2062 375237272 375235212 0.000000e+00 3690
12 TraesCS4D01G107600 chr3D 93.878 441 6 1 2060 2500 375225619 375225200 0.000000e+00 645
13 TraesCS4D01G107600 chr3D 96.711 152 5 0 2835 2986 571522502 571522351 1.370000e-63 254
14 TraesCS4D01G107600 chr7B 93.216 2491 136 20 9 2497 552549944 552552403 0.000000e+00 3633
15 TraesCS4D01G107600 chr7B 92.940 1473 80 13 1028 2500 173303677 173302229 0.000000e+00 2122
16 TraesCS4D01G107600 chr7B 95.355 366 14 3 2131 2494 64970998 64971362 2.000000e-161 579
17 TraesCS4D01G107600 chr1A 92.400 2092 128 20 295 2382 98291582 98289518 0.000000e+00 2953
18 TraesCS4D01G107600 chr3A 96.315 1791 38 4 716 2500 701761531 701759763 0.000000e+00 2916
19 TraesCS4D01G107600 chr7A 94.966 1450 71 2 1 1449 383417560 383419008 0.000000e+00 2272
20 TraesCS4D01G107600 chr1D 98.643 1032 13 1 1469 2500 267389415 267388385 0.000000e+00 1827
21 TraesCS4D01G107600 chr1D 96.178 157 4 2 2830 2986 476496097 476495943 3.820000e-64 255
22 TraesCS4D01G107600 chr6B 94.917 787 40 0 1711 2497 331339900 331340686 0.000000e+00 1232
23 TraesCS4D01G107600 chr2D 96.732 153 5 0 2834 2986 166110981 166111133 3.820000e-64 255
24 TraesCS4D01G107600 chr2D 96.711 152 5 0 2835 2986 536995763 536995914 1.370000e-63 254
25 TraesCS4D01G107600 chr5D 94.937 158 8 0 2829 2986 371077402 371077245 6.390000e-62 248


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G107600 chr4D 85731745 85734730 2985 False 5515 5515 100.000 1 2986 1 chr4D.!!$F1 2985
1 TraesCS4D01G107600 chr7D 184516769 184519266 2497 True 4475 4475 98.999 1 2498 1 chr7D.!!$R1 2497
2 TraesCS4D01G107600 chr6D 460763885 460766368 2483 False 4375 4375 98.360 1 2500 1 chr6D.!!$F2 2499
3 TraesCS4D01G107600 chr6D 19721043 19722167 1124 False 1594 1594 92.274 39 1162 1 chr6D.!!$F1 1123
4 TraesCS4D01G107600 chr5B 485815621 485818102 2481 True 4146 4146 96.727 1 2500 1 chr5B.!!$R1 2499
5 TraesCS4D01G107600 chr3D 363068256 363070732 2476 False 3795 3795 94.242 1 2497 1 chr3D.!!$F1 2496
6 TraesCS4D01G107600 chr3D 375235212 375237272 2060 True 3690 3690 98.982 1 2062 1 chr3D.!!$R2 2061
7 TraesCS4D01G107600 chr7B 552549944 552552403 2459 False 3633 3633 93.216 9 2497 1 chr7B.!!$F2 2488
8 TraesCS4D01G107600 chr7B 173302229 173303677 1448 True 2122 2122 92.940 1028 2500 1 chr7B.!!$R1 1472
9 TraesCS4D01G107600 chr1A 98289518 98291582 2064 True 2953 2953 92.400 295 2382 1 chr1A.!!$R1 2087
10 TraesCS4D01G107600 chr3A 701759763 701761531 1768 True 2916 2916 96.315 716 2500 1 chr3A.!!$R1 1784
11 TraesCS4D01G107600 chr7A 383417560 383419008 1448 False 2272 2272 94.966 1 1449 1 chr7A.!!$F1 1448
12 TraesCS4D01G107600 chr1D 267388385 267389415 1030 True 1827 1827 98.643 1469 2500 1 chr1D.!!$R1 1031
13 TraesCS4D01G107600 chr6B 331339900 331340686 786 False 1232 1232 94.917 1711 2497 1 chr6B.!!$F1 786

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
510 520 3.881688 GCACTCATCCCTTCGTACTACTA 59.118 47.826 0.0 0.0 0.0 1.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2332 2402 2.084546 GGCAAGGTAGCTCGTTTTCAT 58.915 47.619 0.0 0.0 34.17 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
460 470 5.427857 TGGAGGGGTAATAATAGACCTCA 57.572 43.478 10.32 0.00 44.80 3.86
510 520 3.881688 GCACTCATCCCTTCGTACTACTA 59.118 47.826 0.00 0.00 0.00 1.82
559 570 4.616181 ACCGTTTCAAAGTTCTGACAAG 57.384 40.909 0.00 0.00 0.00 3.16
646 659 4.559726 TGGATATTACTAAACGGGGGTCT 58.440 43.478 0.00 0.00 0.00 3.85
901 921 8.020819 TGTGTGTTTTCTTTCTTCAACTTGTAG 58.979 33.333 0.00 0.00 0.00 2.74
1976 1998 2.631160 AACACGTTCATGTTCCTCCA 57.369 45.000 0.00 0.00 38.44 3.86
2063 2086 7.079700 TCCTAGGGAAATAATGTCCATGACTA 58.920 38.462 9.46 0.00 36.83 2.59
2207 2273 9.755804 TGTTAAATTTACAATCATGAAGTTGCA 57.244 25.926 0.00 0.00 0.00 4.08
2414 2484 0.387565 GGGCATTGAACCAAACGTGT 59.612 50.000 0.00 0.00 0.00 4.49
2500 2570 1.539827 GCAATACAACCAAACGCTCCT 59.460 47.619 0.00 0.00 0.00 3.69
2501 2571 2.414161 GCAATACAACCAAACGCTCCTC 60.414 50.000 0.00 0.00 0.00 3.71
2502 2572 2.811431 CAATACAACCAAACGCTCCTCA 59.189 45.455 0.00 0.00 0.00 3.86
2503 2573 2.851263 TACAACCAAACGCTCCTCAT 57.149 45.000 0.00 0.00 0.00 2.90
2504 2574 1.981256 ACAACCAAACGCTCCTCATT 58.019 45.000 0.00 0.00 0.00 2.57
2505 2575 2.306847 ACAACCAAACGCTCCTCATTT 58.693 42.857 0.00 0.00 0.00 2.32
2506 2576 2.693074 ACAACCAAACGCTCCTCATTTT 59.307 40.909 0.00 0.00 0.00 1.82
2507 2577 3.132111 ACAACCAAACGCTCCTCATTTTT 59.868 39.130 0.00 0.00 0.00 1.94
2529 2599 3.889196 TTTCATCGTTTTCCTCAACCG 57.111 42.857 0.00 0.00 0.00 4.44
2530 2600 1.803334 TCATCGTTTTCCTCAACCGG 58.197 50.000 0.00 0.00 0.00 5.28
2531 2601 0.168128 CATCGTTTTCCTCAACCGGC 59.832 55.000 0.00 0.00 0.00 6.13
2532 2602 0.036306 ATCGTTTTCCTCAACCGGCT 59.964 50.000 0.00 0.00 0.00 5.52
2533 2603 0.601841 TCGTTTTCCTCAACCGGCTC 60.602 55.000 0.00 0.00 0.00 4.70
2534 2604 1.574702 CGTTTTCCTCAACCGGCTCC 61.575 60.000 0.00 0.00 0.00 4.70
2535 2605 1.302192 TTTTCCTCAACCGGCTCCG 60.302 57.895 0.00 0.48 39.44 4.63
2549 2619 2.772739 CTCCGGTGAGCCTGATTTG 58.227 57.895 0.00 0.00 0.00 2.32
2550 2620 0.036010 CTCCGGTGAGCCTGATTTGT 60.036 55.000 0.00 0.00 0.00 2.83
2551 2621 0.400213 TCCGGTGAGCCTGATTTGTT 59.600 50.000 0.00 0.00 0.00 2.83
2552 2622 1.202879 TCCGGTGAGCCTGATTTGTTT 60.203 47.619 0.00 0.00 0.00 2.83
2553 2623 1.613437 CCGGTGAGCCTGATTTGTTTT 59.387 47.619 0.00 0.00 0.00 2.43
2554 2624 2.035832 CCGGTGAGCCTGATTTGTTTTT 59.964 45.455 0.00 0.00 0.00 1.94
2577 2647 5.837586 TTCATGCAACCTTTAAAAATCGC 57.162 34.783 0.00 0.00 0.00 4.58
2578 2648 5.132897 TCATGCAACCTTTAAAAATCGCT 57.867 34.783 0.00 0.00 0.00 4.93
2579 2649 4.922692 TCATGCAACCTTTAAAAATCGCTG 59.077 37.500 0.00 0.00 0.00 5.18
2580 2650 3.648009 TGCAACCTTTAAAAATCGCTGG 58.352 40.909 0.00 0.00 0.00 4.85
2581 2651 2.993220 GCAACCTTTAAAAATCGCTGGG 59.007 45.455 0.00 0.00 0.00 4.45
2582 2652 3.584834 CAACCTTTAAAAATCGCTGGGG 58.415 45.455 0.00 0.00 0.00 4.96
2583 2653 2.884320 ACCTTTAAAAATCGCTGGGGT 58.116 42.857 0.00 0.00 0.00 4.95
2584 2654 2.560981 ACCTTTAAAAATCGCTGGGGTG 59.439 45.455 0.00 0.00 0.00 4.61
2585 2655 2.606108 CTTTAAAAATCGCTGGGGTGC 58.394 47.619 0.00 0.00 0.00 5.01
2586 2656 1.621992 TTAAAAATCGCTGGGGTGCA 58.378 45.000 0.00 0.00 0.00 4.57
2587 2657 1.173043 TAAAAATCGCTGGGGTGCAG 58.827 50.000 0.00 0.00 0.00 4.41
2588 2658 1.535204 AAAAATCGCTGGGGTGCAGG 61.535 55.000 0.00 0.00 0.00 4.85
2589 2659 2.713531 AAAATCGCTGGGGTGCAGGT 62.714 55.000 0.00 0.00 0.00 4.00
2590 2660 1.847798 AAATCGCTGGGGTGCAGGTA 61.848 55.000 0.00 0.00 0.00 3.08
2591 2661 1.847798 AATCGCTGGGGTGCAGGTAA 61.848 55.000 0.00 0.00 0.00 2.85
2592 2662 1.635817 ATCGCTGGGGTGCAGGTAAT 61.636 55.000 0.00 0.00 0.00 1.89
2593 2663 1.819632 CGCTGGGGTGCAGGTAATC 60.820 63.158 0.00 0.00 0.00 1.75
2594 2664 1.302949 GCTGGGGTGCAGGTAATCA 59.697 57.895 0.00 0.00 0.00 2.57
2595 2665 0.323360 GCTGGGGTGCAGGTAATCAA 60.323 55.000 0.00 0.00 0.00 2.57
2596 2666 1.463674 CTGGGGTGCAGGTAATCAAC 58.536 55.000 0.00 0.00 0.00 3.18
2597 2667 0.774276 TGGGGTGCAGGTAATCAACA 59.226 50.000 0.00 0.00 0.00 3.33
2598 2668 1.145945 TGGGGTGCAGGTAATCAACAA 59.854 47.619 0.00 0.00 0.00 2.83
2599 2669 2.243810 GGGGTGCAGGTAATCAACAAA 58.756 47.619 0.00 0.00 0.00 2.83
2600 2670 2.231235 GGGGTGCAGGTAATCAACAAAG 59.769 50.000 0.00 0.00 0.00 2.77
2601 2671 2.231235 GGGTGCAGGTAATCAACAAAGG 59.769 50.000 0.00 0.00 0.00 3.11
2602 2672 2.352715 GGTGCAGGTAATCAACAAAGGC 60.353 50.000 0.00 0.00 0.00 4.35
2603 2673 1.892474 TGCAGGTAATCAACAAAGGCC 59.108 47.619 0.00 0.00 0.00 5.19
2604 2674 2.171003 GCAGGTAATCAACAAAGGCCT 58.829 47.619 0.00 0.00 0.00 5.19
2605 2675 2.164422 GCAGGTAATCAACAAAGGCCTC 59.836 50.000 5.23 0.00 0.00 4.70
2606 2676 2.420022 CAGGTAATCAACAAAGGCCTCG 59.580 50.000 5.23 2.40 0.00 4.63
2607 2677 2.304761 AGGTAATCAACAAAGGCCTCGA 59.695 45.455 5.23 0.00 0.00 4.04
2608 2678 2.678336 GGTAATCAACAAAGGCCTCGAG 59.322 50.000 5.23 5.13 0.00 4.04
2609 2679 2.568623 AATCAACAAAGGCCTCGAGT 57.431 45.000 5.23 1.52 0.00 4.18
2610 2680 1.813513 ATCAACAAAGGCCTCGAGTG 58.186 50.000 5.23 4.81 0.00 3.51
2611 2681 0.468226 TCAACAAAGGCCTCGAGTGT 59.532 50.000 5.23 5.54 0.00 3.55
2612 2682 1.689813 TCAACAAAGGCCTCGAGTGTA 59.310 47.619 5.23 0.00 0.00 2.90
2613 2683 2.301870 TCAACAAAGGCCTCGAGTGTAT 59.698 45.455 5.23 0.00 0.00 2.29
2614 2684 3.512329 TCAACAAAGGCCTCGAGTGTATA 59.488 43.478 5.23 0.00 0.00 1.47
2615 2685 4.020928 TCAACAAAGGCCTCGAGTGTATAA 60.021 41.667 5.23 0.00 0.00 0.98
2616 2686 4.124851 ACAAAGGCCTCGAGTGTATAAG 57.875 45.455 5.23 0.00 0.00 1.73
2617 2687 2.866762 CAAAGGCCTCGAGTGTATAAGC 59.133 50.000 5.23 5.34 0.00 3.09
2618 2688 2.074729 AGGCCTCGAGTGTATAAGCT 57.925 50.000 12.31 0.00 0.00 3.74
2619 2689 1.957877 AGGCCTCGAGTGTATAAGCTC 59.042 52.381 12.31 0.57 0.00 4.09
2620 2690 1.000052 GGCCTCGAGTGTATAAGCTCC 60.000 57.143 12.31 0.00 0.00 4.70
2621 2691 1.957877 GCCTCGAGTGTATAAGCTCCT 59.042 52.381 12.31 0.00 0.00 3.69
2622 2692 2.362717 GCCTCGAGTGTATAAGCTCCTT 59.637 50.000 12.31 0.00 0.00 3.36
2623 2693 3.551250 GCCTCGAGTGTATAAGCTCCTTC 60.551 52.174 12.31 0.00 0.00 3.46
2624 2694 3.004944 CCTCGAGTGTATAAGCTCCTTCC 59.995 52.174 12.31 0.00 0.00 3.46
2625 2695 2.957006 TCGAGTGTATAAGCTCCTTCCC 59.043 50.000 0.00 0.00 0.00 3.97
2626 2696 2.959707 CGAGTGTATAAGCTCCTTCCCT 59.040 50.000 0.00 0.00 0.00 4.20
2627 2697 3.243569 CGAGTGTATAAGCTCCTTCCCTG 60.244 52.174 0.00 0.00 0.00 4.45
2628 2698 3.041946 AGTGTATAAGCTCCTTCCCTGG 58.958 50.000 0.00 0.00 0.00 4.45
2629 2699 2.772515 GTGTATAAGCTCCTTCCCTGGT 59.227 50.000 0.00 0.00 0.00 4.00
2630 2700 3.039011 TGTATAAGCTCCTTCCCTGGTC 58.961 50.000 0.00 0.00 0.00 4.02
2631 2701 2.270434 ATAAGCTCCTTCCCTGGTCA 57.730 50.000 0.00 0.00 0.00 4.02
2632 2702 2.038863 TAAGCTCCTTCCCTGGTCAA 57.961 50.000 0.00 0.00 0.00 3.18
2633 2703 1.149101 AAGCTCCTTCCCTGGTCAAA 58.851 50.000 0.00 0.00 0.00 2.69
2634 2704 0.402121 AGCTCCTTCCCTGGTCAAAC 59.598 55.000 0.00 0.00 0.00 2.93
2635 2705 0.402121 GCTCCTTCCCTGGTCAAACT 59.598 55.000 0.00 0.00 0.00 2.66
2636 2706 1.884067 GCTCCTTCCCTGGTCAAACTG 60.884 57.143 0.00 0.00 0.00 3.16
2637 2707 0.110486 TCCTTCCCTGGTCAAACTGC 59.890 55.000 0.00 0.00 0.00 4.40
2638 2708 1.237285 CCTTCCCTGGTCAAACTGCG 61.237 60.000 0.00 0.00 0.00 5.18
2639 2709 0.535102 CTTCCCTGGTCAAACTGCGT 60.535 55.000 0.00 0.00 0.00 5.24
2640 2710 0.817634 TTCCCTGGTCAAACTGCGTG 60.818 55.000 0.00 0.00 0.00 5.34
2641 2711 1.227823 CCCTGGTCAAACTGCGTGA 60.228 57.895 0.00 0.00 0.00 4.35
2642 2712 0.817634 CCCTGGTCAAACTGCGTGAA 60.818 55.000 0.00 0.00 0.00 3.18
2643 2713 1.238439 CCTGGTCAAACTGCGTGAAT 58.762 50.000 0.00 0.00 0.00 2.57
2644 2714 1.197721 CCTGGTCAAACTGCGTGAATC 59.802 52.381 0.00 0.00 0.00 2.52
2645 2715 1.872952 CTGGTCAAACTGCGTGAATCA 59.127 47.619 0.00 0.00 0.00 2.57
2646 2716 2.290367 CTGGTCAAACTGCGTGAATCAA 59.710 45.455 0.00 0.00 0.00 2.57
2647 2717 2.290367 TGGTCAAACTGCGTGAATCAAG 59.710 45.455 0.00 0.00 0.00 3.02
2648 2718 2.290641 GGTCAAACTGCGTGAATCAAGT 59.709 45.455 0.00 0.00 0.00 3.16
2649 2719 3.496884 GGTCAAACTGCGTGAATCAAGTA 59.503 43.478 0.00 0.00 0.00 2.24
2650 2720 4.154195 GGTCAAACTGCGTGAATCAAGTAT 59.846 41.667 0.00 0.00 0.00 2.12
2651 2721 5.350365 GGTCAAACTGCGTGAATCAAGTATA 59.650 40.000 0.00 0.00 0.00 1.47
2652 2722 6.128391 GGTCAAACTGCGTGAATCAAGTATAA 60.128 38.462 0.00 0.00 0.00 0.98
2653 2723 7.295201 GTCAAACTGCGTGAATCAAGTATAAA 58.705 34.615 0.00 0.00 0.00 1.40
2654 2724 7.268447 GTCAAACTGCGTGAATCAAGTATAAAC 59.732 37.037 0.00 0.00 0.00 2.01
2655 2725 7.172532 TCAAACTGCGTGAATCAAGTATAAACT 59.827 33.333 0.00 0.00 37.65 2.66
2656 2726 6.648725 ACTGCGTGAATCAAGTATAAACTC 57.351 37.500 0.00 0.00 33.75 3.01
2657 2727 6.163476 ACTGCGTGAATCAAGTATAAACTCA 58.837 36.000 0.00 0.00 33.75 3.41
2658 2728 6.311445 ACTGCGTGAATCAAGTATAAACTCAG 59.689 38.462 0.00 0.00 33.75 3.35
2659 2729 6.163476 TGCGTGAATCAAGTATAAACTCAGT 58.837 36.000 0.00 0.00 33.75 3.41
2660 2730 6.649141 TGCGTGAATCAAGTATAAACTCAGTT 59.351 34.615 0.00 0.00 33.75 3.16
2661 2731 6.955963 GCGTGAATCAAGTATAAACTCAGTTG 59.044 38.462 0.00 0.00 33.75 3.16
2662 2732 6.955963 CGTGAATCAAGTATAAACTCAGTTGC 59.044 38.462 0.00 0.00 33.75 4.17
2663 2733 7.148573 CGTGAATCAAGTATAAACTCAGTTGCT 60.149 37.037 0.00 0.00 33.75 3.91
2664 2734 8.171840 GTGAATCAAGTATAAACTCAGTTGCTC 58.828 37.037 0.00 0.00 33.75 4.26
2665 2735 7.334421 TGAATCAAGTATAAACTCAGTTGCTCC 59.666 37.037 0.00 0.00 33.75 4.70
2666 2736 6.360370 TCAAGTATAAACTCAGTTGCTCCT 57.640 37.500 0.00 0.00 33.75 3.69
2667 2737 7.476540 TCAAGTATAAACTCAGTTGCTCCTA 57.523 36.000 0.00 0.00 33.75 2.94
2668 2738 7.321153 TCAAGTATAAACTCAGTTGCTCCTAC 58.679 38.462 0.00 0.00 33.75 3.18
2669 2739 6.852420 AGTATAAACTCAGTTGCTCCTACA 57.148 37.500 0.00 0.00 0.00 2.74
2670 2740 7.241042 AGTATAAACTCAGTTGCTCCTACAA 57.759 36.000 0.00 0.00 0.00 2.41
2671 2741 7.603024 AAGTATAAACTCAGTTGCTCCTACAAC 59.397 37.037 0.00 0.00 41.81 3.32
2679 2749 3.645884 GTTGCTCCTACAACGACTTACA 58.354 45.455 0.00 0.00 40.45 2.41
2680 2750 4.053295 GTTGCTCCTACAACGACTTACAA 58.947 43.478 0.00 0.00 40.45 2.41
2681 2751 3.909430 TGCTCCTACAACGACTTACAAG 58.091 45.455 0.00 0.00 0.00 3.16
2682 2752 2.666994 GCTCCTACAACGACTTACAAGC 59.333 50.000 0.00 0.00 0.00 4.01
2683 2753 3.614390 GCTCCTACAACGACTTACAAGCT 60.614 47.826 0.00 0.00 0.00 3.74
2684 2754 4.167268 CTCCTACAACGACTTACAAGCTC 58.833 47.826 0.00 0.00 0.00 4.09
2685 2755 2.915463 CCTACAACGACTTACAAGCTCG 59.085 50.000 0.00 10.39 36.41 5.03
2686 2756 1.137513 ACAACGACTTACAAGCTCGC 58.862 50.000 11.33 0.00 34.91 5.03
2687 2757 1.136690 CAACGACTTACAAGCTCGCA 58.863 50.000 11.33 0.00 34.91 5.10
2688 2758 1.726791 CAACGACTTACAAGCTCGCAT 59.273 47.619 11.33 2.63 34.91 4.73
2689 2759 2.080286 ACGACTTACAAGCTCGCATT 57.920 45.000 11.33 0.00 34.91 3.56
2690 2760 2.413837 ACGACTTACAAGCTCGCATTT 58.586 42.857 11.33 0.00 34.91 2.32
2691 2761 2.806244 ACGACTTACAAGCTCGCATTTT 59.194 40.909 11.33 0.00 34.91 1.82
2692 2762 3.120649 ACGACTTACAAGCTCGCATTTTC 60.121 43.478 11.33 0.00 34.91 2.29
2693 2763 3.120683 CGACTTACAAGCTCGCATTTTCA 60.121 43.478 0.00 0.00 0.00 2.69
2694 2764 4.436050 CGACTTACAAGCTCGCATTTTCAT 60.436 41.667 0.00 0.00 0.00 2.57
2695 2765 5.220397 CGACTTACAAGCTCGCATTTTCATA 60.220 40.000 0.00 0.00 0.00 2.15
2696 2766 5.869350 ACTTACAAGCTCGCATTTTCATAC 58.131 37.500 0.00 0.00 0.00 2.39
2697 2767 5.411361 ACTTACAAGCTCGCATTTTCATACA 59.589 36.000 0.00 0.00 0.00 2.29
2698 2768 4.764679 ACAAGCTCGCATTTTCATACAA 57.235 36.364 0.00 0.00 0.00 2.41
2699 2769 4.726416 ACAAGCTCGCATTTTCATACAAG 58.274 39.130 0.00 0.00 0.00 3.16
2700 2770 3.411415 AGCTCGCATTTTCATACAAGC 57.589 42.857 0.00 0.00 0.00 4.01
2701 2771 3.012518 AGCTCGCATTTTCATACAAGCT 58.987 40.909 0.00 0.00 34.19 3.74
2702 2772 3.103738 GCTCGCATTTTCATACAAGCTG 58.896 45.455 0.00 0.00 0.00 4.24
2703 2773 3.181507 GCTCGCATTTTCATACAAGCTGA 60.182 43.478 0.00 0.00 0.00 4.26
2704 2774 4.672542 GCTCGCATTTTCATACAAGCTGAA 60.673 41.667 0.00 0.00 0.00 3.02
2705 2775 5.565592 TCGCATTTTCATACAAGCTGAAT 57.434 34.783 0.00 0.00 32.94 2.57
2706 2776 5.572211 TCGCATTTTCATACAAGCTGAATC 58.428 37.500 0.00 0.00 32.94 2.52
2707 2777 5.355071 TCGCATTTTCATACAAGCTGAATCT 59.645 36.000 0.00 0.00 32.94 2.40
2708 2778 5.680229 CGCATTTTCATACAAGCTGAATCTC 59.320 40.000 0.00 0.00 32.94 2.75
2709 2779 5.975939 GCATTTTCATACAAGCTGAATCTCC 59.024 40.000 0.00 0.00 32.94 3.71
2710 2780 5.801350 TTTTCATACAAGCTGAATCTCCG 57.199 39.130 0.00 0.00 32.94 4.63
2711 2781 2.826428 TCATACAAGCTGAATCTCCGC 58.174 47.619 0.00 0.00 0.00 5.54
2712 2782 1.869767 CATACAAGCTGAATCTCCGCC 59.130 52.381 0.00 0.00 0.00 6.13
2713 2783 0.178068 TACAAGCTGAATCTCCGCCC 59.822 55.000 0.00 0.00 0.00 6.13
2714 2784 1.821332 CAAGCTGAATCTCCGCCCC 60.821 63.158 0.00 0.00 0.00 5.80
2715 2785 2.300967 AAGCTGAATCTCCGCCCCA 61.301 57.895 0.00 0.00 0.00 4.96
2716 2786 2.203126 GCTGAATCTCCGCCCCAG 60.203 66.667 0.00 0.00 0.00 4.45
2717 2787 2.203126 CTGAATCTCCGCCCCAGC 60.203 66.667 0.00 0.00 0.00 4.85
2718 2788 2.688666 TGAATCTCCGCCCCAGCT 60.689 61.111 0.00 0.00 36.60 4.24
2719 2789 2.203126 GAATCTCCGCCCCAGCTG 60.203 66.667 6.78 6.78 36.60 4.24
2720 2790 3.764160 GAATCTCCGCCCCAGCTGG 62.764 68.421 26.87 26.87 36.60 4.85
2733 2803 3.418068 GCTGGTCGCTGTGCACTC 61.418 66.667 19.41 8.94 35.14 3.51
2734 2804 3.108289 CTGGTCGCTGTGCACTCG 61.108 66.667 19.41 20.14 0.00 4.18
2735 2805 4.662961 TGGTCGCTGTGCACTCGG 62.663 66.667 24.17 13.97 0.00 4.63
2736 2806 4.664677 GGTCGCTGTGCACTCGGT 62.665 66.667 24.17 0.00 0.00 4.69
2737 2807 2.661866 GTCGCTGTGCACTCGGTT 60.662 61.111 24.17 0.00 0.00 4.44
2738 2808 2.355837 TCGCTGTGCACTCGGTTC 60.356 61.111 24.17 6.43 0.00 3.62
2739 2809 3.767230 CGCTGTGCACTCGGTTCG 61.767 66.667 19.41 8.27 0.00 3.95
2740 2810 2.355837 GCTGTGCACTCGGTTCGA 60.356 61.111 19.41 0.00 0.00 3.71
2741 2811 2.658707 GCTGTGCACTCGGTTCGAC 61.659 63.158 19.41 0.00 0.00 4.20
2742 2812 1.007271 CTGTGCACTCGGTTCGACT 60.007 57.895 19.41 0.00 0.00 4.18
2743 2813 1.004277 CTGTGCACTCGGTTCGACTC 61.004 60.000 19.41 0.00 0.00 3.36
2744 2814 1.733399 GTGCACTCGGTTCGACTCC 60.733 63.158 10.32 0.00 0.00 3.85
2746 2816 2.178521 CACTCGGTTCGACTCCGG 59.821 66.667 22.37 16.70 46.82 5.14
2749 2819 2.749044 TCGGTTCGACTCCGGGAG 60.749 66.667 22.40 22.40 46.82 4.30
2750 2820 2.749044 CGGTTCGACTCCGGGAGA 60.749 66.667 30.13 5.66 43.68 3.71
2751 2821 2.119655 CGGTTCGACTCCGGGAGAT 61.120 63.158 30.13 14.33 43.68 2.75
2752 2822 1.734748 GGTTCGACTCCGGGAGATC 59.265 63.158 30.13 20.37 36.24 2.75
2753 2823 1.355916 GTTCGACTCCGGGAGATCG 59.644 63.158 30.13 28.80 35.89 3.69
2754 2824 1.094073 GTTCGACTCCGGGAGATCGA 61.094 60.000 30.31 30.31 38.92 3.59
2755 2825 1.094073 TTCGACTCCGGGAGATCGAC 61.094 60.000 32.17 18.27 39.65 4.20
2756 2826 1.524165 CGACTCCGGGAGATCGACT 60.524 63.158 30.13 6.68 36.28 4.18
2757 2827 1.777030 CGACTCCGGGAGATCGACTG 61.777 65.000 30.13 2.40 36.28 3.51
2758 2828 1.448922 GACTCCGGGAGATCGACTGG 61.449 65.000 30.13 10.35 33.32 4.00
2759 2829 2.123854 TCCGGGAGATCGACTGGG 60.124 66.667 14.98 2.89 33.83 4.45
2760 2830 3.227276 CCGGGAGATCGACTGGGG 61.227 72.222 9.08 0.00 0.00 4.96
2761 2831 3.917760 CGGGAGATCGACTGGGGC 61.918 72.222 0.00 0.00 0.00 5.80
2762 2832 2.764128 GGGAGATCGACTGGGGCA 60.764 66.667 0.00 0.00 0.00 5.36
2763 2833 2.801631 GGGAGATCGACTGGGGCAG 61.802 68.421 0.00 0.00 37.52 4.85
2764 2834 1.758514 GGAGATCGACTGGGGCAGA 60.759 63.158 0.00 0.00 35.18 4.26
2765 2835 1.330655 GGAGATCGACTGGGGCAGAA 61.331 60.000 0.00 0.00 35.18 3.02
2766 2836 0.537188 GAGATCGACTGGGGCAGAAA 59.463 55.000 0.00 0.00 35.18 2.52
2767 2837 0.984230 AGATCGACTGGGGCAGAAAA 59.016 50.000 0.00 0.00 35.18 2.29
2768 2838 1.065854 AGATCGACTGGGGCAGAAAAG 60.066 52.381 0.00 0.00 35.18 2.27
2769 2839 0.984230 ATCGACTGGGGCAGAAAAGA 59.016 50.000 0.00 0.00 35.18 2.52
2770 2840 0.762418 TCGACTGGGGCAGAAAAGAA 59.238 50.000 0.00 0.00 35.18 2.52
2771 2841 1.351017 TCGACTGGGGCAGAAAAGAAT 59.649 47.619 0.00 0.00 35.18 2.40
2772 2842 1.740025 CGACTGGGGCAGAAAAGAATC 59.260 52.381 0.00 0.00 35.18 2.52
2773 2843 2.616510 CGACTGGGGCAGAAAAGAATCT 60.617 50.000 0.00 0.00 35.18 2.40
2774 2844 3.369471 CGACTGGGGCAGAAAAGAATCTA 60.369 47.826 0.00 0.00 35.18 1.98
2775 2845 4.195416 GACTGGGGCAGAAAAGAATCTAG 58.805 47.826 0.00 0.00 35.18 2.43
2776 2846 2.948315 CTGGGGCAGAAAAGAATCTAGC 59.052 50.000 0.00 0.00 32.44 3.42
2777 2847 2.578021 TGGGGCAGAAAAGAATCTAGCT 59.422 45.455 0.00 0.00 0.00 3.32
2778 2848 3.780294 TGGGGCAGAAAAGAATCTAGCTA 59.220 43.478 0.00 0.00 0.00 3.32
2779 2849 4.413520 TGGGGCAGAAAAGAATCTAGCTAT 59.586 41.667 0.00 0.00 0.00 2.97
2780 2850 5.606749 TGGGGCAGAAAAGAATCTAGCTATA 59.393 40.000 0.00 0.00 0.00 1.31
2781 2851 6.169800 GGGGCAGAAAAGAATCTAGCTATAG 58.830 44.000 0.00 0.00 0.00 1.31
2782 2852 6.239743 GGGGCAGAAAAGAATCTAGCTATAGT 60.240 42.308 0.84 0.00 0.00 2.12
2783 2853 7.220740 GGGCAGAAAAGAATCTAGCTATAGTT 58.779 38.462 0.84 0.00 0.00 2.24
2784 2854 7.717436 GGGCAGAAAAGAATCTAGCTATAGTTT 59.283 37.037 0.84 0.00 0.00 2.66
2785 2855 8.769891 GGCAGAAAAGAATCTAGCTATAGTTTC 58.230 37.037 0.84 0.00 37.73 2.78
2786 2856 9.541143 GCAGAAAAGAATCTAGCTATAGTTTCT 57.459 33.333 0.84 0.00 44.49 2.52
2791 2861 8.582433 AAGAATCTAGCTATAGTTTCTTTCGC 57.418 34.615 13.39 0.00 46.43 4.70
2792 2862 6.858993 AGAATCTAGCTATAGTTTCTTTCGCG 59.141 38.462 0.00 0.00 41.90 5.87
2793 2863 5.496133 TCTAGCTATAGTTTCTTTCGCGT 57.504 39.130 5.77 0.00 0.00 6.01
2794 2864 6.609237 TCTAGCTATAGTTTCTTTCGCGTA 57.391 37.500 5.77 0.00 0.00 4.42
2795 2865 6.656945 TCTAGCTATAGTTTCTTTCGCGTAG 58.343 40.000 5.77 5.25 0.00 3.51
2796 2866 5.496133 AGCTATAGTTTCTTTCGCGTAGA 57.504 39.130 5.77 7.85 0.00 2.59
2797 2867 6.074544 AGCTATAGTTTCTTTCGCGTAGAT 57.925 37.500 5.77 0.00 0.00 1.98
2798 2868 7.199541 AGCTATAGTTTCTTTCGCGTAGATA 57.800 36.000 5.77 3.07 0.00 1.98
2799 2869 7.818642 AGCTATAGTTTCTTTCGCGTAGATAT 58.181 34.615 5.77 8.10 0.00 1.63
2800 2870 7.751348 AGCTATAGTTTCTTTCGCGTAGATATG 59.249 37.037 5.77 3.31 0.00 1.78
2801 2871 7.008447 GCTATAGTTTCTTTCGCGTAGATATGG 59.992 40.741 5.77 8.54 0.00 2.74
2802 2872 3.802685 AGTTTCTTTCGCGTAGATATGGC 59.197 43.478 5.77 0.57 0.00 4.40
2810 2880 1.993370 GCGTAGATATGGCGATTGACC 59.007 52.381 0.00 0.00 0.00 4.02
2811 2881 2.352814 GCGTAGATATGGCGATTGACCT 60.353 50.000 0.00 0.00 0.00 3.85
2812 2882 3.502920 CGTAGATATGGCGATTGACCTC 58.497 50.000 0.00 0.00 0.00 3.85
2813 2883 3.057526 CGTAGATATGGCGATTGACCTCA 60.058 47.826 0.00 0.00 0.00 3.86
2814 2884 3.393089 AGATATGGCGATTGACCTCAC 57.607 47.619 0.00 0.00 0.00 3.51
2815 2885 2.037772 AGATATGGCGATTGACCTCACC 59.962 50.000 0.00 0.00 0.00 4.02
2816 2886 0.104120 TATGGCGATTGACCTCACCG 59.896 55.000 0.00 0.00 0.00 4.94
2817 2887 1.613317 ATGGCGATTGACCTCACCGA 61.613 55.000 0.00 0.00 0.00 4.69
2818 2888 1.519455 GGCGATTGACCTCACCGAG 60.519 63.158 0.00 0.00 0.00 4.63
2819 2889 1.215647 GCGATTGACCTCACCGAGT 59.784 57.895 0.00 0.00 0.00 4.18
2820 2890 0.389948 GCGATTGACCTCACCGAGTT 60.390 55.000 0.00 0.00 0.00 3.01
2821 2891 1.630148 CGATTGACCTCACCGAGTTC 58.370 55.000 0.00 0.00 0.00 3.01
2822 2892 1.202582 CGATTGACCTCACCGAGTTCT 59.797 52.381 0.00 0.00 0.00 3.01
2823 2893 2.352814 CGATTGACCTCACCGAGTTCTT 60.353 50.000 0.00 0.00 0.00 2.52
2824 2894 2.526304 TTGACCTCACCGAGTTCTTG 57.474 50.000 0.00 0.00 0.00 3.02
2825 2895 0.679505 TGACCTCACCGAGTTCTTGG 59.320 55.000 4.67 4.67 0.00 3.61
2826 2896 0.680061 GACCTCACCGAGTTCTTGGT 59.320 55.000 5.95 5.95 39.66 3.67
2827 2897 1.070289 GACCTCACCGAGTTCTTGGTT 59.930 52.381 8.86 0.00 35.96 3.67
2828 2898 1.489230 ACCTCACCGAGTTCTTGGTTT 59.511 47.619 8.86 0.00 35.96 3.27
2829 2899 2.143925 CCTCACCGAGTTCTTGGTTTC 58.856 52.381 8.86 0.00 35.96 2.78
2830 2900 2.143925 CTCACCGAGTTCTTGGTTTCC 58.856 52.381 8.86 0.00 35.96 3.13
2831 2901 1.487142 TCACCGAGTTCTTGGTTTCCA 59.513 47.619 8.86 0.00 35.96 3.53
2832 2902 2.105821 TCACCGAGTTCTTGGTTTCCAT 59.894 45.455 8.86 0.00 35.96 3.41
2833 2903 2.484264 CACCGAGTTCTTGGTTTCCATC 59.516 50.000 8.86 0.00 35.96 3.51
2834 2904 1.732259 CCGAGTTCTTGGTTTCCATCG 59.268 52.381 0.00 2.90 32.79 3.84
2835 2905 1.732259 CGAGTTCTTGGTTTCCATCGG 59.268 52.381 2.15 0.00 30.39 4.18
2836 2906 1.468914 GAGTTCTTGGTTTCCATCGGC 59.531 52.381 0.00 0.00 31.53 5.54
2837 2907 1.202879 AGTTCTTGGTTTCCATCGGCA 60.203 47.619 0.00 0.00 31.53 5.69
2838 2908 1.200020 GTTCTTGGTTTCCATCGGCAG 59.800 52.381 0.00 0.00 31.53 4.85
2839 2909 0.690192 TCTTGGTTTCCATCGGCAGA 59.310 50.000 0.00 0.00 31.53 4.26
2840 2910 1.073125 TCTTGGTTTCCATCGGCAGAA 59.927 47.619 0.00 0.00 31.53 3.02
2841 2911 1.885887 CTTGGTTTCCATCGGCAGAAA 59.114 47.619 0.00 0.00 31.53 2.52
2842 2912 2.214376 TGGTTTCCATCGGCAGAAAT 57.786 45.000 0.00 0.00 34.69 2.17
2843 2913 2.091541 TGGTTTCCATCGGCAGAAATC 58.908 47.619 0.00 0.00 34.69 2.17
2844 2914 2.091541 GGTTTCCATCGGCAGAAATCA 58.908 47.619 0.00 0.00 34.03 2.57
2845 2915 2.159379 GGTTTCCATCGGCAGAAATCAC 60.159 50.000 0.00 0.00 34.03 3.06
2846 2916 2.487762 GTTTCCATCGGCAGAAATCACA 59.512 45.455 0.00 0.00 34.69 3.58
2847 2917 2.715749 TCCATCGGCAGAAATCACAT 57.284 45.000 0.00 0.00 0.00 3.21
2848 2918 3.836365 TCCATCGGCAGAAATCACATA 57.164 42.857 0.00 0.00 0.00 2.29
2849 2919 4.356405 TCCATCGGCAGAAATCACATAT 57.644 40.909 0.00 0.00 0.00 1.78
2850 2920 4.717877 TCCATCGGCAGAAATCACATATT 58.282 39.130 0.00 0.00 0.00 1.28
2851 2921 5.132502 TCCATCGGCAGAAATCACATATTT 58.867 37.500 0.00 0.00 0.00 1.40
2852 2922 5.008911 TCCATCGGCAGAAATCACATATTTG 59.991 40.000 0.00 0.00 0.00 2.32
2853 2923 5.008911 CCATCGGCAGAAATCACATATTTGA 59.991 40.000 0.00 0.00 0.00 2.69
2854 2924 5.484173 TCGGCAGAAATCACATATTTGAC 57.516 39.130 0.00 0.00 0.00 3.18
2855 2925 4.335315 TCGGCAGAAATCACATATTTGACC 59.665 41.667 0.00 0.00 0.00 4.02
2856 2926 4.336433 CGGCAGAAATCACATATTTGACCT 59.664 41.667 0.00 0.00 0.00 3.85
2857 2927 5.585390 GGCAGAAATCACATATTTGACCTG 58.415 41.667 10.82 10.82 0.00 4.00
2858 2928 5.357878 GGCAGAAATCACATATTTGACCTGA 59.642 40.000 15.94 0.00 0.00 3.86
2859 2929 6.459298 GGCAGAAATCACATATTTGACCTGAG 60.459 42.308 15.94 1.99 0.00 3.35
2860 2930 6.459298 GCAGAAATCACATATTTGACCTGAGG 60.459 42.308 15.94 0.00 0.00 3.86
2861 2931 6.039047 CAGAAATCACATATTTGACCTGAGGG 59.961 42.308 2.38 0.00 38.88 4.30
2862 2932 3.281727 TCACATATTTGACCTGAGGGC 57.718 47.619 2.38 0.00 35.63 5.19
2863 2933 2.575735 TCACATATTTGACCTGAGGGCA 59.424 45.455 0.82 0.82 35.63 5.36
2864 2934 3.010027 TCACATATTTGACCTGAGGGCAA 59.990 43.478 17.56 17.56 35.63 4.52
2865 2935 3.763360 CACATATTTGACCTGAGGGCAAA 59.237 43.478 32.72 32.72 40.24 3.68
2866 2936 4.220382 CACATATTTGACCTGAGGGCAAAA 59.780 41.667 33.99 22.92 39.79 2.44
2867 2937 5.025453 ACATATTTGACCTGAGGGCAAAAT 58.975 37.500 33.99 23.94 39.79 1.82
2868 2938 5.127682 ACATATTTGACCTGAGGGCAAAATC 59.872 40.000 33.99 7.10 39.79 2.17
2869 2939 2.673775 TTGACCTGAGGGCAAAATCA 57.326 45.000 19.38 0.00 35.63 2.57
2870 2940 2.673775 TGACCTGAGGGCAAAATCAA 57.326 45.000 3.43 0.00 35.63 2.57
2871 2941 2.956132 TGACCTGAGGGCAAAATCAAA 58.044 42.857 3.43 0.00 35.63 2.69
2872 2942 3.509442 TGACCTGAGGGCAAAATCAAAT 58.491 40.909 3.43 0.00 35.63 2.32
2873 2943 3.511146 TGACCTGAGGGCAAAATCAAATC 59.489 43.478 3.43 0.00 35.63 2.17
2874 2944 3.509442 ACCTGAGGGCAAAATCAAATCA 58.491 40.909 2.38 0.00 35.63 2.57
2875 2945 3.259123 ACCTGAGGGCAAAATCAAATCAC 59.741 43.478 2.38 0.00 35.63 3.06
2876 2946 3.258872 CCTGAGGGCAAAATCAAATCACA 59.741 43.478 0.00 0.00 0.00 3.58
2877 2947 4.262549 CCTGAGGGCAAAATCAAATCACAA 60.263 41.667 0.00 0.00 0.00 3.33
2878 2948 5.287674 TGAGGGCAAAATCAAATCACAAA 57.712 34.783 0.00 0.00 0.00 2.83
2879 2949 5.055812 TGAGGGCAAAATCAAATCACAAAC 58.944 37.500 0.00 0.00 0.00 2.93
2880 2950 5.163322 TGAGGGCAAAATCAAATCACAAACT 60.163 36.000 0.00 0.00 0.00 2.66
2881 2951 5.058490 AGGGCAAAATCAAATCACAAACTG 58.942 37.500 0.00 0.00 0.00 3.16
2882 2952 5.055812 GGGCAAAATCAAATCACAAACTGA 58.944 37.500 0.00 0.00 0.00 3.41
2883 2953 5.050159 GGGCAAAATCAAATCACAAACTGAC 60.050 40.000 0.00 0.00 0.00 3.51
2884 2954 5.050159 GGCAAAATCAAATCACAAACTGACC 60.050 40.000 0.00 0.00 0.00 4.02
2885 2955 5.754890 GCAAAATCAAATCACAAACTGACCT 59.245 36.000 0.00 0.00 0.00 3.85
2886 2956 6.292488 GCAAAATCAAATCACAAACTGACCTG 60.292 38.462 0.00 0.00 0.00 4.00
2887 2957 3.988379 TCAAATCACAAACTGACCTGC 57.012 42.857 0.00 0.00 0.00 4.85
2888 2958 3.554934 TCAAATCACAAACTGACCTGCT 58.445 40.909 0.00 0.00 0.00 4.24
2889 2959 3.953612 TCAAATCACAAACTGACCTGCTT 59.046 39.130 0.00 0.00 0.00 3.91
2890 2960 4.402155 TCAAATCACAAACTGACCTGCTTT 59.598 37.500 0.00 0.00 0.00 3.51
2891 2961 4.574599 AATCACAAACTGACCTGCTTTC 57.425 40.909 0.00 0.00 0.00 2.62
2892 2962 1.939934 TCACAAACTGACCTGCTTTCG 59.060 47.619 0.00 0.00 0.00 3.46
2893 2963 1.939934 CACAAACTGACCTGCTTTCGA 59.060 47.619 0.00 0.00 0.00 3.71
2894 2964 2.354510 CACAAACTGACCTGCTTTCGAA 59.645 45.455 0.00 0.00 0.00 3.71
2895 2965 3.013921 ACAAACTGACCTGCTTTCGAAA 58.986 40.909 10.71 10.71 0.00 3.46
2896 2966 3.442273 ACAAACTGACCTGCTTTCGAAAA 59.558 39.130 12.41 0.00 0.00 2.29
2897 2967 4.082463 ACAAACTGACCTGCTTTCGAAAAA 60.082 37.500 12.41 2.51 0.00 1.94
2915 2985 4.590850 AAAAATTTCACTCTGCTGACCC 57.409 40.909 0.00 0.00 0.00 4.46
2916 2986 3.515602 AAATTTCACTCTGCTGACCCT 57.484 42.857 0.00 0.00 0.00 4.34
2917 2987 3.515602 AATTTCACTCTGCTGACCCTT 57.484 42.857 0.00 0.00 0.00 3.95
2918 2988 2.550830 TTTCACTCTGCTGACCCTTC 57.449 50.000 0.00 0.00 0.00 3.46
2919 2989 0.687354 TTCACTCTGCTGACCCTTCC 59.313 55.000 0.00 0.00 0.00 3.46
2920 2990 1.079543 CACTCTGCTGACCCTTCCG 60.080 63.158 0.00 0.00 0.00 4.30
2921 2991 1.534235 ACTCTGCTGACCCTTCCGT 60.534 57.895 0.00 0.00 0.00 4.69
2922 2992 1.079543 CTCTGCTGACCCTTCCGTG 60.080 63.158 0.00 0.00 0.00 4.94
2923 2993 1.821061 CTCTGCTGACCCTTCCGTGT 61.821 60.000 0.00 0.00 0.00 4.49
2924 2994 1.669115 CTGCTGACCCTTCCGTGTG 60.669 63.158 0.00 0.00 0.00 3.82
2925 2995 2.358737 GCTGACCCTTCCGTGTGG 60.359 66.667 0.00 0.00 0.00 4.17
2926 2996 2.358737 CTGACCCTTCCGTGTGGC 60.359 66.667 0.00 0.00 34.14 5.01
2927 2997 4.308458 TGACCCTTCCGTGTGGCG 62.308 66.667 0.00 0.00 40.95 5.69
2952 3022 4.508128 GCTAGGCGCCGCACACTA 62.508 66.667 23.20 5.64 0.00 2.74
2953 3023 2.582498 CTAGGCGCCGCACACTAC 60.582 66.667 23.20 0.00 0.00 2.73
2954 3024 3.064987 CTAGGCGCCGCACACTACT 62.065 63.158 23.20 1.83 0.00 2.57
2955 3025 1.721664 CTAGGCGCCGCACACTACTA 61.722 60.000 23.20 3.15 0.00 1.82
2956 3026 1.105167 TAGGCGCCGCACACTACTAT 61.105 55.000 23.20 0.33 0.00 2.12
2957 3027 2.237751 GGCGCCGCACACTACTATG 61.238 63.158 12.58 0.00 0.00 2.23
2958 3028 2.871427 GCGCCGCACACTACTATGC 61.871 63.158 3.15 0.00 38.52 3.14
2959 3029 1.518352 CGCCGCACACTACTATGCA 60.518 57.895 0.00 0.00 42.17 3.96
2960 3030 1.482621 CGCCGCACACTACTATGCAG 61.483 60.000 0.00 0.00 42.17 4.41
2961 3031 0.460284 GCCGCACACTACTATGCAGT 60.460 55.000 0.00 0.00 42.17 4.40
2963 3033 0.647410 CGCACACTACTATGCAGTGC 59.353 55.000 8.58 8.58 45.96 4.40
2965 3035 2.680312 CACACTACTATGCAGTGCCT 57.320 50.000 13.72 5.20 45.96 4.75
2966 3036 2.544685 CACACTACTATGCAGTGCCTC 58.455 52.381 13.72 0.00 45.96 4.70
2967 3037 2.167281 CACACTACTATGCAGTGCCTCT 59.833 50.000 13.72 0.00 45.96 3.69
2968 3038 2.167281 ACACTACTATGCAGTGCCTCTG 59.833 50.000 13.72 2.84 45.96 3.35
2975 3045 4.950479 CAGTGCCTCTGCCTTAGG 57.050 61.111 0.00 0.00 37.36 2.69
2985 3055 4.452733 GCCTTAGGCGTCGCACCT 62.453 66.667 20.50 10.37 39.62 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
460 470 3.228188 TGAAAAGCTCATTCTGGGTGT 57.772 42.857 12.01 0.00 0.00 4.16
510 520 4.980339 AAGTTCCAAATGCCCTTTCAAT 57.020 36.364 0.00 0.00 0.00 2.57
559 570 5.844773 AGGAAAGGGATAATAAGGCCTAC 57.155 43.478 5.16 0.00 0.00 3.18
646 659 5.476945 TGCTCACTGTAGACTAGTTCATCAA 59.523 40.000 0.00 0.00 0.00 2.57
901 921 2.833943 ACCAAGGGAAAGAAATCATGGC 59.166 45.455 0.00 0.00 0.00 4.40
1380 1402 2.102925 GGAAGAGAGGAGGAAGCATGAG 59.897 54.545 0.00 0.00 0.00 2.90
1976 1998 4.072131 ACAGTAAAATGAATCACACGCCT 58.928 39.130 0.00 0.00 0.00 5.52
2063 2086 6.293698 TCTGACATCATTACATGCTAGCATT 58.706 36.000 27.59 19.62 33.90 3.56
2207 2273 7.385267 TGTAAATAGCCATGCAAAAATTCAGT 58.615 30.769 0.00 0.00 0.00 3.41
2332 2402 2.084546 GGCAAGGTAGCTCGTTTTCAT 58.915 47.619 0.00 0.00 34.17 2.57
2516 2586 1.574702 CGGAGCCGGTTGAGGAAAAC 61.575 60.000 1.90 0.00 35.56 2.43
2517 2587 1.302192 CGGAGCCGGTTGAGGAAAA 60.302 57.895 1.90 0.00 35.56 2.29
2518 2588 2.345991 CGGAGCCGGTTGAGGAAA 59.654 61.111 1.90 0.00 35.56 3.13
2531 2601 0.036010 ACAAATCAGGCTCACCGGAG 60.036 55.000 9.46 0.00 43.83 4.63
2532 2602 0.400213 AACAAATCAGGCTCACCGGA 59.600 50.000 9.46 0.00 44.75 5.14
2533 2603 1.247567 AAACAAATCAGGCTCACCGG 58.752 50.000 0.00 0.00 42.76 5.28
2534 2604 3.369546 AAAAACAAATCAGGCTCACCG 57.630 42.857 0.00 0.00 42.76 4.94
2552 2622 7.011857 AGCGATTTTTAAAGGTTGCATGAAAAA 59.988 29.630 13.46 0.00 32.24 1.94
2553 2623 6.481644 AGCGATTTTTAAAGGTTGCATGAAAA 59.518 30.769 13.46 0.00 0.00 2.29
2554 2624 5.988561 AGCGATTTTTAAAGGTTGCATGAAA 59.011 32.000 13.46 0.00 0.00 2.69
2555 2625 5.404968 CAGCGATTTTTAAAGGTTGCATGAA 59.595 36.000 13.46 0.00 0.00 2.57
2556 2626 4.922692 CAGCGATTTTTAAAGGTTGCATGA 59.077 37.500 13.46 0.00 0.00 3.07
2557 2627 4.091800 CCAGCGATTTTTAAAGGTTGCATG 59.908 41.667 13.46 0.00 0.00 4.06
2558 2628 4.244862 CCAGCGATTTTTAAAGGTTGCAT 58.755 39.130 13.46 1.28 0.00 3.96
2559 2629 3.553922 CCCAGCGATTTTTAAAGGTTGCA 60.554 43.478 13.46 0.00 0.00 4.08
2560 2630 2.993220 CCCAGCGATTTTTAAAGGTTGC 59.007 45.455 6.18 6.18 0.00 4.17
2561 2631 3.006430 ACCCCAGCGATTTTTAAAGGTTG 59.994 43.478 0.00 0.00 0.00 3.77
2562 2632 3.006430 CACCCCAGCGATTTTTAAAGGTT 59.994 43.478 0.00 0.00 0.00 3.50
2563 2633 2.560981 CACCCCAGCGATTTTTAAAGGT 59.439 45.455 0.00 0.00 0.00 3.50
2564 2634 2.673893 GCACCCCAGCGATTTTTAAAGG 60.674 50.000 0.00 0.00 0.00 3.11
2565 2635 2.029470 TGCACCCCAGCGATTTTTAAAG 60.029 45.455 0.00 0.00 37.31 1.85
2566 2636 1.964223 TGCACCCCAGCGATTTTTAAA 59.036 42.857 0.00 0.00 37.31 1.52
2567 2637 1.543802 CTGCACCCCAGCGATTTTTAA 59.456 47.619 0.00 0.00 37.31 1.52
2568 2638 1.173043 CTGCACCCCAGCGATTTTTA 58.827 50.000 0.00 0.00 37.31 1.52
2569 2639 1.535204 CCTGCACCCCAGCGATTTTT 61.535 55.000 0.00 0.00 40.36 1.94
2570 2640 1.978617 CCTGCACCCCAGCGATTTT 60.979 57.895 0.00 0.00 40.36 1.82
2571 2641 1.847798 TACCTGCACCCCAGCGATTT 61.848 55.000 0.00 0.00 40.36 2.17
2572 2642 1.847798 TTACCTGCACCCCAGCGATT 61.848 55.000 0.00 0.00 40.36 3.34
2573 2643 1.635817 ATTACCTGCACCCCAGCGAT 61.636 55.000 0.00 0.00 40.36 4.58
2574 2644 2.252072 GATTACCTGCACCCCAGCGA 62.252 60.000 0.00 0.00 40.36 4.93
2575 2645 1.819632 GATTACCTGCACCCCAGCG 60.820 63.158 0.00 0.00 40.36 5.18
2576 2646 0.323360 TTGATTACCTGCACCCCAGC 60.323 55.000 0.00 0.00 40.36 4.85
2577 2647 1.271871 TGTTGATTACCTGCACCCCAG 60.272 52.381 0.00 0.00 41.41 4.45
2578 2648 0.774276 TGTTGATTACCTGCACCCCA 59.226 50.000 0.00 0.00 0.00 4.96
2579 2649 1.917872 TTGTTGATTACCTGCACCCC 58.082 50.000 0.00 0.00 0.00 4.95
2580 2650 2.231235 CCTTTGTTGATTACCTGCACCC 59.769 50.000 0.00 0.00 0.00 4.61
2581 2651 2.352715 GCCTTTGTTGATTACCTGCACC 60.353 50.000 0.00 0.00 0.00 5.01
2582 2652 2.352715 GGCCTTTGTTGATTACCTGCAC 60.353 50.000 0.00 0.00 0.00 4.57
2583 2653 1.892474 GGCCTTTGTTGATTACCTGCA 59.108 47.619 0.00 0.00 0.00 4.41
2584 2654 2.164422 GAGGCCTTTGTTGATTACCTGC 59.836 50.000 6.77 0.00 0.00 4.85
2585 2655 2.420022 CGAGGCCTTTGTTGATTACCTG 59.580 50.000 6.77 0.00 0.00 4.00
2586 2656 2.304761 TCGAGGCCTTTGTTGATTACCT 59.695 45.455 6.77 0.00 0.00 3.08
2587 2657 2.678336 CTCGAGGCCTTTGTTGATTACC 59.322 50.000 6.77 0.00 0.00 2.85
2588 2658 3.125316 CACTCGAGGCCTTTGTTGATTAC 59.875 47.826 18.41 0.00 0.00 1.89
2589 2659 3.244422 ACACTCGAGGCCTTTGTTGATTA 60.244 43.478 18.41 0.00 0.00 1.75
2590 2660 2.154462 CACTCGAGGCCTTTGTTGATT 58.846 47.619 18.41 0.00 0.00 2.57
2591 2661 1.072331 ACACTCGAGGCCTTTGTTGAT 59.928 47.619 18.41 0.00 0.00 2.57
2592 2662 0.468226 ACACTCGAGGCCTTTGTTGA 59.532 50.000 18.41 0.00 0.00 3.18
2593 2663 2.163818 TACACTCGAGGCCTTTGTTG 57.836 50.000 18.41 5.19 0.00 3.33
2594 2664 4.504858 CTTATACACTCGAGGCCTTTGTT 58.495 43.478 18.41 5.46 0.00 2.83
2595 2665 3.679083 GCTTATACACTCGAGGCCTTTGT 60.679 47.826 18.41 13.67 0.00 2.83
2596 2666 2.866762 GCTTATACACTCGAGGCCTTTG 59.133 50.000 18.41 7.93 0.00 2.77
2597 2667 2.766828 AGCTTATACACTCGAGGCCTTT 59.233 45.455 18.41 0.00 0.00 3.11
2598 2668 2.362717 GAGCTTATACACTCGAGGCCTT 59.637 50.000 18.41 1.37 0.00 4.35
2599 2669 1.957877 GAGCTTATACACTCGAGGCCT 59.042 52.381 18.41 3.86 0.00 5.19
2600 2670 1.000052 GGAGCTTATACACTCGAGGCC 60.000 57.143 18.41 0.00 33.55 5.19
2601 2671 1.957877 AGGAGCTTATACACTCGAGGC 59.042 52.381 18.41 8.44 33.55 4.70
2602 2672 3.004944 GGAAGGAGCTTATACACTCGAGG 59.995 52.174 18.41 8.36 33.55 4.63
2603 2673 3.004944 GGGAAGGAGCTTATACACTCGAG 59.995 52.174 11.84 11.84 33.55 4.04
2604 2674 2.957006 GGGAAGGAGCTTATACACTCGA 59.043 50.000 0.00 0.00 33.55 4.04
2605 2675 2.959707 AGGGAAGGAGCTTATACACTCG 59.040 50.000 0.00 0.00 33.55 4.18
2606 2676 3.070302 CCAGGGAAGGAGCTTATACACTC 59.930 52.174 0.00 0.00 0.00 3.51
2607 2677 3.041946 CCAGGGAAGGAGCTTATACACT 58.958 50.000 0.00 0.00 0.00 3.55
2608 2678 2.772515 ACCAGGGAAGGAGCTTATACAC 59.227 50.000 0.00 0.00 0.00 2.90
2609 2679 3.039011 GACCAGGGAAGGAGCTTATACA 58.961 50.000 0.00 0.00 0.00 2.29
2610 2680 3.039011 TGACCAGGGAAGGAGCTTATAC 58.961 50.000 0.00 0.00 0.00 1.47
2611 2681 3.414759 TGACCAGGGAAGGAGCTTATA 57.585 47.619 0.00 0.00 0.00 0.98
2612 2682 2.270434 TGACCAGGGAAGGAGCTTAT 57.730 50.000 0.00 0.00 0.00 1.73
2613 2683 2.038863 TTGACCAGGGAAGGAGCTTA 57.961 50.000 0.00 0.00 0.00 3.09
2614 2684 1.149101 TTTGACCAGGGAAGGAGCTT 58.851 50.000 0.00 0.00 0.00 3.74
2615 2685 0.402121 GTTTGACCAGGGAAGGAGCT 59.598 55.000 0.00 0.00 0.00 4.09
2616 2686 0.402121 AGTTTGACCAGGGAAGGAGC 59.598 55.000 0.00 0.00 0.00 4.70
2617 2687 1.884067 GCAGTTTGACCAGGGAAGGAG 60.884 57.143 0.00 0.00 0.00 3.69
2618 2688 0.110486 GCAGTTTGACCAGGGAAGGA 59.890 55.000 0.00 0.00 0.00 3.36
2619 2689 1.237285 CGCAGTTTGACCAGGGAAGG 61.237 60.000 0.00 0.00 0.00 3.46
2620 2690 0.535102 ACGCAGTTTGACCAGGGAAG 60.535 55.000 0.00 0.00 37.78 3.46
2621 2691 0.817634 CACGCAGTTTGACCAGGGAA 60.818 55.000 0.00 0.00 41.61 3.97
2622 2692 1.227823 CACGCAGTTTGACCAGGGA 60.228 57.895 0.00 0.00 41.61 4.20
2623 2693 0.817634 TTCACGCAGTTTGACCAGGG 60.818 55.000 0.00 0.00 41.61 4.45
2624 2694 1.197721 GATTCACGCAGTTTGACCAGG 59.802 52.381 0.00 0.00 41.61 4.45
2625 2695 1.872952 TGATTCACGCAGTTTGACCAG 59.127 47.619 0.00 0.00 41.61 4.00
2626 2696 1.960417 TGATTCACGCAGTTTGACCA 58.040 45.000 0.00 0.00 41.61 4.02
2627 2697 2.290641 ACTTGATTCACGCAGTTTGACC 59.709 45.455 0.00 0.00 41.61 4.02
2628 2698 3.609103 ACTTGATTCACGCAGTTTGAC 57.391 42.857 0.00 0.00 41.61 3.18
2629 2699 7.172532 AGTTTATACTTGATTCACGCAGTTTGA 59.827 33.333 0.00 0.00 41.61 2.69
2630 2700 7.298122 AGTTTATACTTGATTCACGCAGTTTG 58.702 34.615 0.00 0.00 41.61 2.93
2631 2701 7.172532 TGAGTTTATACTTGATTCACGCAGTTT 59.827 33.333 0.00 0.00 33.64 2.66
2632 2702 6.649141 TGAGTTTATACTTGATTCACGCAGTT 59.351 34.615 0.00 0.00 33.64 3.16
2633 2703 6.163476 TGAGTTTATACTTGATTCACGCAGT 58.837 36.000 0.00 0.00 36.08 4.40
2634 2704 6.311445 ACTGAGTTTATACTTGATTCACGCAG 59.689 38.462 0.00 0.00 34.75 5.18
2635 2705 6.163476 ACTGAGTTTATACTTGATTCACGCA 58.837 36.000 0.00 0.00 33.84 5.24
2636 2706 6.648725 ACTGAGTTTATACTTGATTCACGC 57.351 37.500 0.00 0.00 33.84 5.34
2637 2707 6.955963 GCAACTGAGTTTATACTTGATTCACG 59.044 38.462 0.00 0.00 33.84 4.35
2638 2708 8.034058 AGCAACTGAGTTTATACTTGATTCAC 57.966 34.615 0.00 0.00 33.84 3.18
2639 2709 7.334421 GGAGCAACTGAGTTTATACTTGATTCA 59.666 37.037 0.00 0.00 33.84 2.57
2640 2710 7.550906 AGGAGCAACTGAGTTTATACTTGATTC 59.449 37.037 0.00 0.00 33.84 2.52
2641 2711 7.398024 AGGAGCAACTGAGTTTATACTTGATT 58.602 34.615 0.00 0.00 33.84 2.57
2642 2712 6.951971 AGGAGCAACTGAGTTTATACTTGAT 58.048 36.000 0.00 0.00 33.84 2.57
2643 2713 6.360370 AGGAGCAACTGAGTTTATACTTGA 57.640 37.500 0.00 0.00 33.84 3.02
2644 2714 7.097192 TGTAGGAGCAACTGAGTTTATACTTG 58.903 38.462 0.00 0.00 33.84 3.16
2645 2715 7.241042 TGTAGGAGCAACTGAGTTTATACTT 57.759 36.000 0.00 0.00 33.84 2.24
2646 2716 6.852420 TGTAGGAGCAACTGAGTTTATACT 57.148 37.500 0.00 0.00 37.31 2.12
2647 2717 6.034683 CGTTGTAGGAGCAACTGAGTTTATAC 59.965 42.308 0.00 0.00 44.61 1.47
2648 2718 6.071784 TCGTTGTAGGAGCAACTGAGTTTATA 60.072 38.462 0.00 0.00 44.61 0.98
2649 2719 4.929808 CGTTGTAGGAGCAACTGAGTTTAT 59.070 41.667 0.00 0.00 44.61 1.40
2650 2720 4.038282 TCGTTGTAGGAGCAACTGAGTTTA 59.962 41.667 0.00 0.00 44.61 2.01
2651 2721 3.131396 CGTTGTAGGAGCAACTGAGTTT 58.869 45.455 0.00 0.00 44.61 2.66
2652 2722 2.364324 TCGTTGTAGGAGCAACTGAGTT 59.636 45.455 0.00 0.00 44.61 3.01
2653 2723 1.961394 TCGTTGTAGGAGCAACTGAGT 59.039 47.619 7.25 0.00 44.61 3.41
2654 2724 2.029828 AGTCGTTGTAGGAGCAACTGAG 60.030 50.000 7.25 0.00 44.61 3.35
2655 2725 1.961394 AGTCGTTGTAGGAGCAACTGA 59.039 47.619 7.25 4.18 44.61 3.41
2656 2726 2.440539 AGTCGTTGTAGGAGCAACTG 57.559 50.000 7.25 2.25 44.61 3.16
2657 2727 3.319972 TGTAAGTCGTTGTAGGAGCAACT 59.680 43.478 7.25 0.00 44.61 3.16
2658 2728 3.645884 TGTAAGTCGTTGTAGGAGCAAC 58.354 45.455 0.00 0.00 43.68 4.17
2659 2729 4.304110 CTTGTAAGTCGTTGTAGGAGCAA 58.696 43.478 0.00 0.00 0.00 3.91
2660 2730 3.859627 GCTTGTAAGTCGTTGTAGGAGCA 60.860 47.826 0.00 0.00 0.00 4.26
2661 2731 2.666994 GCTTGTAAGTCGTTGTAGGAGC 59.333 50.000 0.00 0.00 0.00 4.70
2662 2732 4.167268 GAGCTTGTAAGTCGTTGTAGGAG 58.833 47.826 0.00 0.00 0.00 3.69
2663 2733 3.365666 CGAGCTTGTAAGTCGTTGTAGGA 60.366 47.826 0.00 0.00 0.00 2.94
2664 2734 2.915463 CGAGCTTGTAAGTCGTTGTAGG 59.085 50.000 0.00 0.00 0.00 3.18
2665 2735 2.341760 GCGAGCTTGTAAGTCGTTGTAG 59.658 50.000 2.14 0.00 34.42 2.74
2666 2736 2.287728 TGCGAGCTTGTAAGTCGTTGTA 60.288 45.455 2.14 2.53 34.42 2.41
2667 2737 1.137513 GCGAGCTTGTAAGTCGTTGT 58.862 50.000 2.14 0.00 34.42 3.32
2668 2738 1.136690 TGCGAGCTTGTAAGTCGTTG 58.863 50.000 2.14 0.00 34.42 4.10
2669 2739 2.080286 ATGCGAGCTTGTAAGTCGTT 57.920 45.000 2.14 4.69 34.42 3.85
2670 2740 2.080286 AATGCGAGCTTGTAAGTCGT 57.920 45.000 2.14 0.00 34.42 4.34
2671 2741 3.120683 TGAAAATGCGAGCTTGTAAGTCG 60.121 43.478 2.14 10.25 34.77 4.18
2672 2742 4.404507 TGAAAATGCGAGCTTGTAAGTC 57.595 40.909 2.14 0.00 0.00 3.01
2673 2743 5.411361 TGTATGAAAATGCGAGCTTGTAAGT 59.589 36.000 2.14 0.00 0.00 2.24
2674 2744 5.868257 TGTATGAAAATGCGAGCTTGTAAG 58.132 37.500 2.14 0.00 0.00 2.34
2675 2745 5.871465 TGTATGAAAATGCGAGCTTGTAA 57.129 34.783 2.14 0.00 0.00 2.41
2676 2746 5.673568 GCTTGTATGAAAATGCGAGCTTGTA 60.674 40.000 2.14 0.00 39.58 2.41
2677 2747 4.726416 CTTGTATGAAAATGCGAGCTTGT 58.274 39.130 2.14 0.00 0.00 3.16
2678 2748 3.545078 GCTTGTATGAAAATGCGAGCTTG 59.455 43.478 8.32 0.00 39.58 4.01
2679 2749 3.762779 GCTTGTATGAAAATGCGAGCTT 58.237 40.909 8.32 0.00 39.58 3.74
2680 2750 3.012518 AGCTTGTATGAAAATGCGAGCT 58.987 40.909 11.43 11.43 45.27 4.09
2681 2751 3.103738 CAGCTTGTATGAAAATGCGAGC 58.896 45.455 7.68 7.68 41.94 5.03
2682 2752 4.604843 TCAGCTTGTATGAAAATGCGAG 57.395 40.909 0.00 0.00 0.00 5.03
2683 2753 5.355071 AGATTCAGCTTGTATGAAAATGCGA 59.645 36.000 0.00 0.00 39.92 5.10
2684 2754 5.575957 AGATTCAGCTTGTATGAAAATGCG 58.424 37.500 0.00 0.00 39.92 4.73
2685 2755 5.975939 GGAGATTCAGCTTGTATGAAAATGC 59.024 40.000 0.00 0.00 39.92 3.56
2686 2756 6.197276 CGGAGATTCAGCTTGTATGAAAATG 58.803 40.000 0.00 0.00 39.92 2.32
2687 2757 5.220931 GCGGAGATTCAGCTTGTATGAAAAT 60.221 40.000 0.00 0.00 39.92 1.82
2688 2758 4.094887 GCGGAGATTCAGCTTGTATGAAAA 59.905 41.667 0.00 0.00 39.92 2.29
2689 2759 3.623060 GCGGAGATTCAGCTTGTATGAAA 59.377 43.478 0.00 0.00 39.92 2.69
2690 2760 3.198068 GCGGAGATTCAGCTTGTATGAA 58.802 45.455 0.00 0.00 40.72 2.57
2691 2761 2.483714 GGCGGAGATTCAGCTTGTATGA 60.484 50.000 1.54 0.00 37.71 2.15
2692 2762 1.869767 GGCGGAGATTCAGCTTGTATG 59.130 52.381 1.54 0.00 37.71 2.39
2693 2763 1.202698 GGGCGGAGATTCAGCTTGTAT 60.203 52.381 1.54 0.00 37.71 2.29
2694 2764 0.178068 GGGCGGAGATTCAGCTTGTA 59.822 55.000 1.54 0.00 37.71 2.41
2695 2765 1.078143 GGGCGGAGATTCAGCTTGT 60.078 57.895 1.54 0.00 37.71 3.16
2696 2766 1.821332 GGGGCGGAGATTCAGCTTG 60.821 63.158 1.54 0.00 37.71 4.01
2697 2767 2.262774 CTGGGGCGGAGATTCAGCTT 62.263 60.000 1.54 0.00 37.71 3.74
2698 2768 2.688666 TGGGGCGGAGATTCAGCT 60.689 61.111 1.54 0.00 37.71 4.24
2699 2769 2.203126 CTGGGGCGGAGATTCAGC 60.203 66.667 0.00 0.00 36.84 4.26
2700 2770 2.203126 GCTGGGGCGGAGATTCAG 60.203 66.667 0.00 0.00 0.00 3.02
2701 2771 2.688666 AGCTGGGGCGGAGATTCA 60.689 61.111 0.00 0.00 44.37 2.57
2702 2772 2.203126 CAGCTGGGGCGGAGATTC 60.203 66.667 5.57 0.00 44.37 2.52
2703 2773 3.801997 CCAGCTGGGGCGGAGATT 61.802 66.667 26.14 0.00 44.37 2.40
2717 2787 3.108289 CGAGTGCACAGCGACCAG 61.108 66.667 22.58 0.81 0.00 4.00
2718 2788 4.662961 CCGAGTGCACAGCGACCA 62.663 66.667 26.84 0.00 0.00 4.02
2719 2789 4.664677 ACCGAGTGCACAGCGACC 62.665 66.667 26.84 6.52 0.00 4.79
2720 2790 2.658707 GAACCGAGTGCACAGCGAC 61.659 63.158 26.84 16.27 0.00 5.19
2721 2791 2.355837 GAACCGAGTGCACAGCGA 60.356 61.111 26.84 0.00 0.00 4.93
2722 2792 3.767230 CGAACCGAGTGCACAGCG 61.767 66.667 21.04 20.90 0.00 5.18
2723 2793 2.355837 TCGAACCGAGTGCACAGC 60.356 61.111 21.04 9.69 0.00 4.40
2724 2794 1.004277 GAGTCGAACCGAGTGCACAG 61.004 60.000 21.04 12.46 39.77 3.66
2725 2795 1.007734 GAGTCGAACCGAGTGCACA 60.008 57.895 21.04 0.00 39.77 4.57
2726 2796 1.733399 GGAGTCGAACCGAGTGCAC 60.733 63.158 9.40 9.40 44.75 4.57
2727 2797 2.649034 GGAGTCGAACCGAGTGCA 59.351 61.111 10.12 0.00 44.75 4.57
2734 2804 1.734748 GATCTCCCGGAGTCGAACC 59.265 63.158 14.36 0.00 39.00 3.62
2735 2805 1.094073 TCGATCTCCCGGAGTCGAAC 61.094 60.000 26.37 11.61 38.32 3.95
2736 2806 1.094073 GTCGATCTCCCGGAGTCGAA 61.094 60.000 28.42 17.54 40.61 3.71
2737 2807 1.523258 GTCGATCTCCCGGAGTCGA 60.523 63.158 25.50 25.50 38.64 4.20
2738 2808 1.524165 AGTCGATCTCCCGGAGTCG 60.524 63.158 22.96 22.96 35.89 4.18
2739 2809 1.448922 CCAGTCGATCTCCCGGAGTC 61.449 65.000 14.36 9.99 0.00 3.36
2740 2810 1.454111 CCAGTCGATCTCCCGGAGT 60.454 63.158 14.36 1.90 0.00 3.85
2741 2811 2.196925 CCCAGTCGATCTCCCGGAG 61.197 68.421 8.30 8.30 0.00 4.63
2742 2812 2.123854 CCCAGTCGATCTCCCGGA 60.124 66.667 0.73 0.00 0.00 5.14
2743 2813 3.227276 CCCCAGTCGATCTCCCGG 61.227 72.222 0.00 0.00 0.00 5.73
2744 2814 3.917760 GCCCCAGTCGATCTCCCG 61.918 72.222 0.00 0.00 0.00 5.14
2745 2815 2.764128 TGCCCCAGTCGATCTCCC 60.764 66.667 0.00 0.00 0.00 4.30
2746 2816 1.330655 TTCTGCCCCAGTCGATCTCC 61.331 60.000 0.00 0.00 32.61 3.71
2747 2817 0.537188 TTTCTGCCCCAGTCGATCTC 59.463 55.000 0.00 0.00 32.61 2.75
2748 2818 0.984230 TTTTCTGCCCCAGTCGATCT 59.016 50.000 0.00 0.00 32.61 2.75
2749 2819 1.066143 TCTTTTCTGCCCCAGTCGATC 60.066 52.381 0.00 0.00 32.61 3.69
2750 2820 0.984230 TCTTTTCTGCCCCAGTCGAT 59.016 50.000 0.00 0.00 32.61 3.59
2751 2821 0.762418 TTCTTTTCTGCCCCAGTCGA 59.238 50.000 0.00 0.00 32.61 4.20
2752 2822 1.740025 GATTCTTTTCTGCCCCAGTCG 59.260 52.381 0.00 0.00 32.61 4.18
2753 2823 3.078891 AGATTCTTTTCTGCCCCAGTC 57.921 47.619 0.00 0.00 32.61 3.51
2754 2824 3.623453 GCTAGATTCTTTTCTGCCCCAGT 60.623 47.826 0.00 0.00 32.61 4.00
2755 2825 2.948315 GCTAGATTCTTTTCTGCCCCAG 59.052 50.000 0.00 0.00 0.00 4.45
2756 2826 2.578021 AGCTAGATTCTTTTCTGCCCCA 59.422 45.455 0.00 0.00 0.00 4.96
2757 2827 3.289407 AGCTAGATTCTTTTCTGCCCC 57.711 47.619 0.00 0.00 0.00 5.80
2758 2828 6.764379 ACTATAGCTAGATTCTTTTCTGCCC 58.236 40.000 0.00 0.00 0.00 5.36
2759 2829 8.669946 AAACTATAGCTAGATTCTTTTCTGCC 57.330 34.615 0.00 0.00 0.00 4.85
2760 2830 9.541143 AGAAACTATAGCTAGATTCTTTTCTGC 57.459 33.333 0.00 0.00 41.66 4.26
2767 2837 6.858993 CGCGAAAGAAACTATAGCTAGATTCT 59.141 38.462 0.00 1.33 44.48 2.40
2768 2838 6.637658 ACGCGAAAGAAACTATAGCTAGATTC 59.362 38.462 15.93 0.00 37.14 2.52
2769 2839 6.505272 ACGCGAAAGAAACTATAGCTAGATT 58.495 36.000 15.93 0.00 0.00 2.40
2770 2840 6.074544 ACGCGAAAGAAACTATAGCTAGAT 57.925 37.500 15.93 0.00 0.00 1.98
2771 2841 5.496133 ACGCGAAAGAAACTATAGCTAGA 57.504 39.130 15.93 0.00 0.00 2.43
2772 2842 6.656945 TCTACGCGAAAGAAACTATAGCTAG 58.343 40.000 15.93 0.00 0.00 3.42
2773 2843 6.609237 TCTACGCGAAAGAAACTATAGCTA 57.391 37.500 15.93 0.00 0.00 3.32
2774 2844 5.496133 TCTACGCGAAAGAAACTATAGCT 57.504 39.130 15.93 0.00 0.00 3.32
2775 2845 7.008447 CCATATCTACGCGAAAGAAACTATAGC 59.992 40.741 15.93 0.00 0.00 2.97
2776 2846 7.008447 GCCATATCTACGCGAAAGAAACTATAG 59.992 40.741 15.93 0.00 0.00 1.31
2777 2847 6.805271 GCCATATCTACGCGAAAGAAACTATA 59.195 38.462 15.93 4.64 0.00 1.31
2778 2848 5.634020 GCCATATCTACGCGAAAGAAACTAT 59.366 40.000 15.93 7.47 0.00 2.12
2779 2849 4.980434 GCCATATCTACGCGAAAGAAACTA 59.020 41.667 15.93 5.37 0.00 2.24
2780 2850 3.802685 GCCATATCTACGCGAAAGAAACT 59.197 43.478 15.93 3.13 0.00 2.66
2781 2851 4.116713 GCCATATCTACGCGAAAGAAAC 57.883 45.455 15.93 1.42 0.00 2.78
2790 2860 1.993370 GGTCAATCGCCATATCTACGC 59.007 52.381 0.00 0.00 0.00 4.42
2791 2861 3.057526 TGAGGTCAATCGCCATATCTACG 60.058 47.826 0.00 0.00 0.00 3.51
2792 2862 4.238514 GTGAGGTCAATCGCCATATCTAC 58.761 47.826 0.00 0.00 0.00 2.59
2793 2863 4.521130 GTGAGGTCAATCGCCATATCTA 57.479 45.455 0.00 0.00 0.00 1.98
2794 2864 3.393089 GTGAGGTCAATCGCCATATCT 57.607 47.619 0.00 0.00 0.00 1.98
2800 2870 1.519455 CTCGGTGAGGTCAATCGCC 60.519 63.158 0.00 0.00 44.82 5.54
2801 2871 0.389948 AACTCGGTGAGGTCAATCGC 60.390 55.000 0.00 0.00 33.35 4.58
2802 2872 1.630148 GAACTCGGTGAGGTCAATCG 58.370 55.000 6.98 0.00 44.94 3.34
2807 2877 0.680061 ACCAAGAACTCGGTGAGGTC 59.320 55.000 3.67 3.67 45.84 3.85
2808 2878 1.129058 AACCAAGAACTCGGTGAGGT 58.871 50.000 0.00 0.00 35.08 3.85
2809 2879 2.143925 GAAACCAAGAACTCGGTGAGG 58.856 52.381 0.00 0.00 35.08 3.86
2810 2880 2.143925 GGAAACCAAGAACTCGGTGAG 58.856 52.381 0.00 0.00 35.08 3.51
2811 2881 1.487142 TGGAAACCAAGAACTCGGTGA 59.513 47.619 0.00 0.00 35.08 4.02
2812 2882 1.961793 TGGAAACCAAGAACTCGGTG 58.038 50.000 0.00 0.00 35.08 4.94
2813 2883 2.779506 GATGGAAACCAAGAACTCGGT 58.220 47.619 0.00 0.00 36.95 4.69
2814 2884 1.732259 CGATGGAAACCAAGAACTCGG 59.268 52.381 0.00 0.00 36.95 4.63
2815 2885 1.732259 CCGATGGAAACCAAGAACTCG 59.268 52.381 0.00 0.00 36.95 4.18
2816 2886 1.468914 GCCGATGGAAACCAAGAACTC 59.531 52.381 0.00 0.00 36.95 3.01
2817 2887 1.202879 TGCCGATGGAAACCAAGAACT 60.203 47.619 0.00 0.00 36.95 3.01
2818 2888 1.200020 CTGCCGATGGAAACCAAGAAC 59.800 52.381 0.00 0.00 36.95 3.01
2819 2889 1.073125 TCTGCCGATGGAAACCAAGAA 59.927 47.619 0.00 0.00 36.95 2.52
2820 2890 0.690192 TCTGCCGATGGAAACCAAGA 59.310 50.000 0.00 0.00 36.95 3.02
2821 2891 1.533625 TTCTGCCGATGGAAACCAAG 58.466 50.000 0.00 0.00 36.95 3.61
2822 2892 1.988293 TTTCTGCCGATGGAAACCAA 58.012 45.000 0.00 0.00 36.95 3.67
2823 2893 2.091541 GATTTCTGCCGATGGAAACCA 58.908 47.619 0.00 0.00 38.19 3.67
2824 2894 2.091541 TGATTTCTGCCGATGGAAACC 58.908 47.619 0.00 0.00 34.83 3.27
2825 2895 2.487762 TGTGATTTCTGCCGATGGAAAC 59.512 45.455 0.00 0.00 34.83 2.78
2826 2896 2.789213 TGTGATTTCTGCCGATGGAAA 58.211 42.857 0.00 0.00 36.17 3.13
2827 2897 2.488204 TGTGATTTCTGCCGATGGAA 57.512 45.000 0.00 0.00 0.00 3.53
2828 2898 2.715749 ATGTGATTTCTGCCGATGGA 57.284 45.000 0.00 0.00 0.00 3.41
2829 2899 5.008911 TCAAATATGTGATTTCTGCCGATGG 59.991 40.000 0.00 0.00 0.00 3.51
2830 2900 5.911280 GTCAAATATGTGATTTCTGCCGATG 59.089 40.000 0.00 0.00 0.00 3.84
2831 2901 5.009010 GGTCAAATATGTGATTTCTGCCGAT 59.991 40.000 0.00 0.00 0.00 4.18
2832 2902 4.335315 GGTCAAATATGTGATTTCTGCCGA 59.665 41.667 0.00 0.00 0.00 5.54
2833 2903 4.336433 AGGTCAAATATGTGATTTCTGCCG 59.664 41.667 0.00 0.00 0.00 5.69
2834 2904 5.357878 TCAGGTCAAATATGTGATTTCTGCC 59.642 40.000 14.18 5.01 0.00 4.85
2835 2905 6.441093 TCAGGTCAAATATGTGATTTCTGC 57.559 37.500 14.18 0.00 0.00 4.26
2836 2906 6.039047 CCCTCAGGTCAAATATGTGATTTCTG 59.961 42.308 0.00 7.91 0.00 3.02
2837 2907 6.125029 CCCTCAGGTCAAATATGTGATTTCT 58.875 40.000 0.00 0.00 0.00 2.52
2838 2908 5.221126 GCCCTCAGGTCAAATATGTGATTTC 60.221 44.000 0.00 0.00 34.57 2.17
2839 2909 4.646492 GCCCTCAGGTCAAATATGTGATTT 59.354 41.667 0.00 0.00 34.57 2.17
2840 2910 4.210331 GCCCTCAGGTCAAATATGTGATT 58.790 43.478 0.00 0.00 34.57 2.57
2841 2911 3.202818 TGCCCTCAGGTCAAATATGTGAT 59.797 43.478 0.00 0.00 34.57 3.06
2842 2912 2.575735 TGCCCTCAGGTCAAATATGTGA 59.424 45.455 0.00 0.00 34.57 3.58
2843 2913 3.003394 TGCCCTCAGGTCAAATATGTG 57.997 47.619 0.00 0.00 34.57 3.21
2844 2914 3.737559 TTGCCCTCAGGTCAAATATGT 57.262 42.857 0.00 0.00 34.57 2.29
2845 2915 5.127519 TGATTTTGCCCTCAGGTCAAATATG 59.872 40.000 0.00 0.00 38.27 1.78
2846 2916 5.271598 TGATTTTGCCCTCAGGTCAAATAT 58.728 37.500 0.00 0.00 38.27 1.28
2847 2917 4.671831 TGATTTTGCCCTCAGGTCAAATA 58.328 39.130 0.00 0.00 38.27 1.40
2848 2918 3.509442 TGATTTTGCCCTCAGGTCAAAT 58.491 40.909 0.00 0.00 38.27 2.32
2849 2919 2.956132 TGATTTTGCCCTCAGGTCAAA 58.044 42.857 0.00 0.00 37.37 2.69
2850 2920 2.673775 TGATTTTGCCCTCAGGTCAA 57.326 45.000 0.00 0.00 34.57 3.18
2851 2921 2.673775 TTGATTTTGCCCTCAGGTCA 57.326 45.000 0.00 0.00 34.57 4.02
2852 2922 3.511146 TGATTTGATTTTGCCCTCAGGTC 59.489 43.478 0.00 0.00 34.57 3.85
2853 2923 3.259123 GTGATTTGATTTTGCCCTCAGGT 59.741 43.478 0.00 0.00 34.57 4.00
2854 2924 3.258872 TGTGATTTGATTTTGCCCTCAGG 59.741 43.478 0.00 0.00 0.00 3.86
2855 2925 4.524316 TGTGATTTGATTTTGCCCTCAG 57.476 40.909 0.00 0.00 0.00 3.35
2856 2926 4.952071 TTGTGATTTGATTTTGCCCTCA 57.048 36.364 0.00 0.00 0.00 3.86
2857 2927 5.178067 CAGTTTGTGATTTGATTTTGCCCTC 59.822 40.000 0.00 0.00 0.00 4.30
2858 2928 5.058490 CAGTTTGTGATTTGATTTTGCCCT 58.942 37.500 0.00 0.00 0.00 5.19
2859 2929 5.050159 GTCAGTTTGTGATTTGATTTTGCCC 60.050 40.000 0.00 0.00 37.56 5.36
2860 2930 5.050159 GGTCAGTTTGTGATTTGATTTTGCC 60.050 40.000 0.00 0.00 37.56 4.52
2861 2931 5.754890 AGGTCAGTTTGTGATTTGATTTTGC 59.245 36.000 0.00 0.00 37.56 3.68
2862 2932 6.292488 GCAGGTCAGTTTGTGATTTGATTTTG 60.292 38.462 0.00 0.00 37.56 2.44
2863 2933 5.754890 GCAGGTCAGTTTGTGATTTGATTTT 59.245 36.000 0.00 0.00 37.56 1.82
2864 2934 5.069516 AGCAGGTCAGTTTGTGATTTGATTT 59.930 36.000 0.00 0.00 37.56 2.17
2865 2935 4.586001 AGCAGGTCAGTTTGTGATTTGATT 59.414 37.500 0.00 0.00 37.56 2.57
2866 2936 4.147321 AGCAGGTCAGTTTGTGATTTGAT 58.853 39.130 0.00 0.00 37.56 2.57
2867 2937 3.554934 AGCAGGTCAGTTTGTGATTTGA 58.445 40.909 0.00 0.00 37.56 2.69
2868 2938 3.996150 AGCAGGTCAGTTTGTGATTTG 57.004 42.857 0.00 0.00 37.56 2.32
2869 2939 4.498009 CGAAAGCAGGTCAGTTTGTGATTT 60.498 41.667 0.00 0.00 37.56 2.17
2870 2940 3.003689 CGAAAGCAGGTCAGTTTGTGATT 59.996 43.478 0.00 0.00 37.56 2.57
2871 2941 2.549754 CGAAAGCAGGTCAGTTTGTGAT 59.450 45.455 0.00 0.00 37.56 3.06
2872 2942 1.939934 CGAAAGCAGGTCAGTTTGTGA 59.060 47.619 0.00 0.00 0.00 3.58
2873 2943 1.939934 TCGAAAGCAGGTCAGTTTGTG 59.060 47.619 0.00 0.00 0.00 3.33
2874 2944 2.325583 TCGAAAGCAGGTCAGTTTGT 57.674 45.000 0.00 0.00 0.00 2.83
2875 2945 3.691049 TTTCGAAAGCAGGTCAGTTTG 57.309 42.857 6.47 0.00 0.00 2.93
2876 2946 4.712122 TTTTTCGAAAGCAGGTCAGTTT 57.288 36.364 10.98 0.00 0.00 2.66
2894 2964 4.218312 AGGGTCAGCAGAGTGAAATTTTT 58.782 39.130 0.00 0.00 0.00 1.94
2895 2965 3.837355 AGGGTCAGCAGAGTGAAATTTT 58.163 40.909 0.00 0.00 0.00 1.82
2896 2966 3.515602 AGGGTCAGCAGAGTGAAATTT 57.484 42.857 0.00 0.00 0.00 1.82
2897 2967 3.416156 GAAGGGTCAGCAGAGTGAAATT 58.584 45.455 0.00 0.00 0.00 1.82
2898 2968 2.290577 GGAAGGGTCAGCAGAGTGAAAT 60.291 50.000 0.00 0.00 0.00 2.17
2899 2969 1.072331 GGAAGGGTCAGCAGAGTGAAA 59.928 52.381 0.00 0.00 0.00 2.69
2900 2970 0.687354 GGAAGGGTCAGCAGAGTGAA 59.313 55.000 0.00 0.00 0.00 3.18
2901 2971 1.536073 CGGAAGGGTCAGCAGAGTGA 61.536 60.000 0.00 0.00 0.00 3.41
2902 2972 1.079543 CGGAAGGGTCAGCAGAGTG 60.080 63.158 0.00 0.00 0.00 3.51
2903 2973 1.534235 ACGGAAGGGTCAGCAGAGT 60.534 57.895 0.00 0.00 0.00 3.24
2904 2974 1.079543 CACGGAAGGGTCAGCAGAG 60.080 63.158 0.00 0.00 0.00 3.35
2905 2975 3.059982 CACGGAAGGGTCAGCAGA 58.940 61.111 0.00 0.00 0.00 4.26
2936 3006 1.721664 TAGTAGTGTGCGGCGCCTAG 61.722 60.000 30.82 11.41 0.00 3.02
2937 3007 1.105167 ATAGTAGTGTGCGGCGCCTA 61.105 55.000 30.82 21.26 0.00 3.93
2938 3008 2.423898 ATAGTAGTGTGCGGCGCCT 61.424 57.895 30.82 21.24 0.00 5.52
2939 3009 2.106332 ATAGTAGTGTGCGGCGCC 59.894 61.111 30.82 19.07 0.00 6.53
2940 3010 2.871427 GCATAGTAGTGTGCGGCGC 61.871 63.158 27.44 27.44 30.39 6.53
2941 3011 1.482621 CTGCATAGTAGTGTGCGGCG 61.483 60.000 14.32 0.51 43.50 6.46
2942 3012 2.301505 CTGCATAGTAGTGTGCGGC 58.698 57.895 14.32 0.00 43.50 6.53
2944 3014 0.647410 GCACTGCATAGTAGTGTGCG 59.353 55.000 13.78 10.96 45.60 5.34
2946 3016 2.167281 AGAGGCACTGCATAGTAGTGTG 59.833 50.000 14.93 0.80 45.60 3.82
2947 3017 2.167281 CAGAGGCACTGCATAGTAGTGT 59.833 50.000 14.93 0.00 45.60 3.55
2948 3018 2.819115 CAGAGGCACTGCATAGTAGTG 58.181 52.381 10.32 10.32 46.37 2.74
2968 3038 4.452733 AGGTGCGACGCCTAAGGC 62.453 66.667 18.69 0.00 43.18 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.