Multiple sequence alignment - TraesCS4D01G107100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G107100 chr4D 100.000 8437 0 0 1 8437 85334943 85343379 0.000000e+00 15581.0
1 TraesCS4D01G107100 chr4D 94.118 272 14 2 5392 5662 85340223 85340493 6.090000e-111 412.0
2 TraesCS4D01G107100 chr4D 91.503 153 13 0 5510 5662 85340230 85340382 2.390000e-50 211.0
3 TraesCS4D01G107100 chr4D 91.503 153 13 0 5288 5440 85340452 85340604 2.390000e-50 211.0
4 TraesCS4D01G107100 chr4D 93.701 127 6 2 3064 3190 85337884 85338008 1.120000e-43 189.0
5 TraesCS4D01G107100 chr4D 93.701 127 6 2 2942 3066 85338006 85338132 1.120000e-43 189.0
6 TraesCS4D01G107100 chr4B 96.814 5053 100 11 541 5551 122304591 122309624 0.000000e+00 8383.0
7 TraesCS4D01G107100 chr4B 91.608 2276 89 26 6037 8236 122309899 122312148 0.000000e+00 3051.0
8 TraesCS4D01G107100 chr4B 96.310 542 12 6 5392 5928 122309354 122309892 0.000000e+00 883.0
9 TraesCS4D01G107100 chr4B 86.318 497 50 11 1 495 122303809 122304289 7.500000e-145 525.0
10 TraesCS4D01G107100 chr4B 91.558 154 11 2 5510 5662 122309361 122309513 2.390000e-50 211.0
11 TraesCS4D01G107100 chr4B 92.969 128 7 2 2942 3067 122307116 122307243 1.450000e-42 185.0
12 TraesCS4D01G107100 chr4B 92.126 127 8 2 3064 3190 122306994 122307118 2.420000e-40 178.0
13 TraesCS4D01G107100 chr4B 86.957 92 5 1 8331 8422 122312395 122312479 6.970000e-16 97.1
14 TraesCS4D01G107100 chr4A 92.157 2601 138 25 500 3064 498993201 498995771 0.000000e+00 3613.0
15 TraesCS4D01G107100 chr4A 91.382 2135 84 37 6374 8434 498998781 499000889 0.000000e+00 2832.0
16 TraesCS4D01G107100 chr4A 95.593 1407 41 1 4166 5551 498996720 498998126 0.000000e+00 2235.0
17 TraesCS4D01G107100 chr4A 94.058 1077 53 5 3070 4137 498995653 498996727 0.000000e+00 1624.0
18 TraesCS4D01G107100 chr4A 96.667 540 13 3 5392 5927 498997856 498998394 0.000000e+00 893.0
19 TraesCS4D01G107100 chr4A 95.627 343 8 6 6037 6377 498998401 498998738 2.070000e-150 544.0
20 TraesCS4D01G107100 chr4A 91.875 160 13 0 5503 5662 498997856 498998015 3.060000e-54 224.0
21 TraesCS4D01G107100 chr4A 91.503 153 13 0 5288 5440 498997974 498998126 2.390000e-50 211.0
22 TraesCS4D01G107100 chrUn 80.201 798 110 21 4472 5239 344356954 344356175 9.570000e-154 555.0
23 TraesCS4D01G107100 chrUn 80.075 798 111 21 4472 5239 32481952 32481173 4.450000e-152 549.0
24 TraesCS4D01G107100 chrUn 87.097 434 55 1 5000 5433 32481222 32480790 2.740000e-134 490.0
25 TraesCS4D01G107100 chrUn 87.097 434 55 1 5000 5433 344356224 344355792 2.740000e-134 490.0
26 TraesCS4D01G107100 chrUn 84.286 280 38 1 4472 4745 338593959 338594238 1.400000e-67 268.0
27 TraesCS4D01G107100 chrUn 77.309 498 71 20 4754 5227 474243854 474244333 1.090000e-63 255.0
28 TraesCS4D01G107100 chrUn 95.192 104 4 1 5924 6027 137673967 137674069 6.780000e-36 163.0
29 TraesCS4D01G107100 chr3A 80.407 786 106 21 4472 5227 32563720 32564487 9.570000e-154 555.0
30 TraesCS4D01G107100 chr3A 79.898 786 109 22 4472 5227 32609114 32609880 1.610000e-146 531.0
31 TraesCS4D01G107100 chr3A 87.788 434 52 1 5000 5433 32564450 32564882 2.720000e-139 507.0
32 TraesCS4D01G107100 chr3A 87.097 434 55 1 5000 5433 32609843 32610275 2.740000e-134 490.0
33 TraesCS4D01G107100 chr2A 98.039 102 2 0 5926 6027 333751309 333751410 2.420000e-40 178.0
34 TraesCS4D01G107100 chr2A 97.674 86 2 0 5929 6014 362047912 362047997 1.900000e-31 148.0
35 TraesCS4D01G107100 chr2A 94.624 93 3 1 5917 6009 144955239 144955329 8.830000e-30 143.0
36 TraesCS4D01G107100 chr6D 97.143 105 1 2 5925 6027 126632364 126632468 8.700000e-40 176.0
37 TraesCS4D01G107100 chr2D 97.059 102 3 0 5926 6027 284540752 284540651 1.130000e-38 172.0
38 TraesCS4D01G107100 chr3D 97.938 97 1 1 5932 6027 250930920 250930824 5.240000e-37 167.0
39 TraesCS4D01G107100 chr6B 98.810 84 1 0 5927 6010 464922023 464922106 5.280000e-32 150.0
40 TraesCS4D01G107100 chr2B 97.674 86 2 0 5929 6014 354079687 354079602 1.900000e-31 148.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G107100 chr4D 85334943 85343379 8436 False 15581.0000 15581 100.00000 1 8437 1 chr4D.!!$F1 8436
1 TraesCS4D01G107100 chr4D 85337884 85340604 2720 False 242.4000 412 92.90520 2942 5662 5 chr4D.!!$F2 2720
2 TraesCS4D01G107100 chr4B 122303809 122312479 8670 False 1689.1375 8383 91.83250 1 8422 8 chr4B.!!$F1 8421
3 TraesCS4D01G107100 chr4A 498993201 499000889 7688 False 1522.0000 3613 93.60775 500 8434 8 chr4A.!!$F1 7934
4 TraesCS4D01G107100 chrUn 344355792 344356954 1162 True 522.5000 555 83.64900 4472 5433 2 chrUn.!!$R2 961
5 TraesCS4D01G107100 chrUn 32480790 32481952 1162 True 519.5000 549 83.58600 4472 5433 2 chrUn.!!$R1 961
6 TraesCS4D01G107100 chr3A 32563720 32564882 1162 False 531.0000 555 84.09750 4472 5433 2 chr3A.!!$F1 961
7 TraesCS4D01G107100 chr3A 32609114 32610275 1161 False 510.5000 531 83.49750 4472 5433 2 chr3A.!!$F2 961

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
614 873 0.108329 GACAGACACGGTACATGGGG 60.108 60.000 0.00 0.00 0.00 4.96 F
669 928 0.800012 TGACGCCTTTATGTTTCGGC 59.200 50.000 0.00 0.00 39.14 5.54 F
1718 1993 0.324614 TGGTGGCTGGTGATACACTG 59.675 55.000 0.00 0.00 34.40 3.66 F
2827 3107 0.673985 TGTGTGTCGTCTTCCTGGAG 59.326 55.000 0.00 0.00 0.00 3.86 F
2867 3148 8.754230 AAGTTTTAGTATCGTCAAGTCCTAAC 57.246 34.615 0.00 0.00 0.00 2.34 F
5511 6130 2.485124 GGATGCAGACCAAGATCAGGAG 60.485 54.545 10.82 2.55 0.00 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1514 1789 0.393808 GCGGGGCTAATCCTGACAAA 60.394 55.000 0.00 0.00 35.18 2.83 R
2664 2944 0.898320 CAGGAGTCACCGGTGAAGAT 59.102 55.000 37.75 25.93 41.85 2.40 R
2867 3148 4.755123 AGGTTGGTTCAGTATCAACTTTCG 59.245 41.667 3.45 0.00 40.20 3.46 R
4719 5026 4.705110 TTCACCCTCTGAAAAGTCATCA 57.295 40.909 0.00 0.00 35.84 3.07 R
5513 6132 3.840831 TCCTTGTCGGAGCAGAATG 57.159 52.632 0.00 0.00 36.69 2.67 R
8125 8911 0.468029 CCACATGCCCCCTATCAACC 60.468 60.000 0.00 0.00 0.00 3.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 7.492344 GGACATGGTTAAATGCAAAAATCCTAG 59.508 37.037 0.00 0.00 0.00 3.02
48 49 6.723977 TGGTTAAATGCAAAAATCCTAGGTCT 59.276 34.615 9.08 0.00 0.00 3.85
58 59 2.154567 TCCTAGGTCTACGGTGCAAT 57.845 50.000 9.08 0.00 0.00 3.56
75 76 7.335924 ACGGTGCAATGACACTAAGTAAAATAT 59.664 33.333 0.00 0.00 40.52 1.28
111 112 1.600957 CATCATCCTTCACATCACCGC 59.399 52.381 0.00 0.00 0.00 5.68
155 158 4.455606 GTGGTTCCCTTCCTTATCTCATG 58.544 47.826 0.00 0.00 0.00 3.07
163 166 1.302832 CTTATCTCATGGCCCGCCC 60.303 63.158 0.00 0.00 34.56 6.13
165 168 3.792325 TATCTCATGGCCCGCCCCT 62.792 63.158 0.00 0.00 34.56 4.79
176 179 1.407656 CCCGCCCCTTGTAGCATAGA 61.408 60.000 0.00 0.00 0.00 1.98
196 199 3.615709 GCCACCCCCTTGCAACAC 61.616 66.667 0.00 0.00 0.00 3.32
210 213 1.731424 GCAACACTGTGATGAGCATGC 60.731 52.381 20.42 10.51 0.00 4.06
211 214 1.135489 CAACACTGTGATGAGCATGCC 60.135 52.381 15.66 6.65 0.00 4.40
219 222 1.489230 TGATGAGCATGCCATCAGTCT 59.511 47.619 31.24 12.46 43.67 3.24
226 229 2.159421 GCATGCCATCAGTCTTTCACAG 60.159 50.000 6.36 0.00 0.00 3.66
229 232 1.881973 GCCATCAGTCTTTCACAGCAA 59.118 47.619 0.00 0.00 0.00 3.91
233 236 2.984562 TCAGTCTTTCACAGCAACACA 58.015 42.857 0.00 0.00 0.00 3.72
249 252 5.836358 AGCAACACAAATAACTCCCCTAAAA 59.164 36.000 0.00 0.00 0.00 1.52
261 264 4.010349 CTCCCCTAAAACACTCATGGTTC 58.990 47.826 0.00 0.00 33.34 3.62
266 269 4.832823 CCTAAAACACTCATGGTTCCCTTT 59.167 41.667 0.00 0.00 33.34 3.11
268 271 3.884037 AACACTCATGGTTCCCTTTCT 57.116 42.857 0.00 0.00 0.00 2.52
269 272 3.884037 ACACTCATGGTTCCCTTTCTT 57.116 42.857 0.00 0.00 0.00 2.52
270 273 3.490348 ACACTCATGGTTCCCTTTCTTG 58.510 45.455 0.00 0.00 0.00 3.02
271 274 2.229784 CACTCATGGTTCCCTTTCTTGC 59.770 50.000 0.00 0.00 0.00 4.01
272 275 2.158475 ACTCATGGTTCCCTTTCTTGCA 60.158 45.455 0.00 0.00 0.00 4.08
273 276 3.094572 CTCATGGTTCCCTTTCTTGCAT 58.905 45.455 0.00 0.00 0.00 3.96
276 279 4.706476 TCATGGTTCCCTTTCTTGCATTAG 59.294 41.667 0.00 0.00 0.00 1.73
277 280 3.430453 TGGTTCCCTTTCTTGCATTAGG 58.570 45.455 0.00 0.00 0.00 2.69
278 281 3.181423 TGGTTCCCTTTCTTGCATTAGGT 60.181 43.478 0.00 0.00 0.00 3.08
279 282 4.043561 TGGTTCCCTTTCTTGCATTAGGTA 59.956 41.667 0.00 0.00 0.00 3.08
280 283 4.640647 GGTTCCCTTTCTTGCATTAGGTAG 59.359 45.833 0.00 0.00 0.00 3.18
281 284 4.503714 TCCCTTTCTTGCATTAGGTAGG 57.496 45.455 0.00 0.00 0.00 3.18
304 307 0.169672 CGAGCCCTGCAACATCAAAG 59.830 55.000 0.00 0.00 0.00 2.77
309 312 0.597568 CCTGCAACATCAAAGGCGAA 59.402 50.000 0.00 0.00 0.00 4.70
322 325 1.976474 GGCGAACCCTTGCAATCCA 60.976 57.895 0.00 0.00 0.00 3.41
327 330 2.238521 GAACCCTTGCAATCCAGACAA 58.761 47.619 0.00 0.00 0.00 3.18
328 331 2.610438 ACCCTTGCAATCCAGACAAT 57.390 45.000 0.00 0.00 0.00 2.71
329 332 3.737559 ACCCTTGCAATCCAGACAATA 57.262 42.857 0.00 0.00 0.00 1.90
333 336 3.488047 CCTTGCAATCCAGACAATAAGCG 60.488 47.826 0.00 0.00 0.00 4.68
334 337 2.984562 TGCAATCCAGACAATAAGCGA 58.015 42.857 0.00 0.00 0.00 4.93
347 350 6.097839 AGACAATAAGCGATGGTTAGTCCTAA 59.902 38.462 0.00 0.00 37.07 2.69
350 353 4.820894 AAGCGATGGTTAGTCCTAAAGT 57.179 40.909 0.00 0.00 37.07 2.66
352 355 5.517322 AGCGATGGTTAGTCCTAAAGTAG 57.483 43.478 0.00 0.00 37.07 2.57
354 357 4.288531 CGATGGTTAGTCCTAAAGTAGCG 58.711 47.826 0.00 0.00 37.07 4.26
386 389 0.602106 CCCGACGCCTACGATAGAGA 60.602 60.000 0.00 0.00 43.93 3.10
390 393 1.195900 GACGCCTACGATAGAGAGCAG 59.804 57.143 0.00 0.00 43.93 4.24
398 401 1.617850 CGATAGAGAGCAGGAGGCAAT 59.382 52.381 0.00 0.00 42.82 3.56
403 406 8.621304 CGATAGAGAGCAGGAGGCAATTGTTA 62.621 46.154 7.40 0.00 42.82 2.41
425 428 1.530323 ACAATAGGTTGTTGTCCCGC 58.470 50.000 0.00 0.00 46.07 6.13
426 429 0.446222 CAATAGGTTGTTGTCCCGCG 59.554 55.000 0.00 0.00 0.00 6.46
427 430 1.303091 AATAGGTTGTTGTCCCGCGC 61.303 55.000 0.00 0.00 0.00 6.86
428 431 3.887335 TAGGTTGTTGTCCCGCGCC 62.887 63.158 0.00 0.00 0.00 6.53
479 482 4.455877 GGAAGTAGTAGCTTGCAACAATGT 59.544 41.667 0.00 0.00 36.90 2.71
481 484 4.641396 AGTAGTAGCTTGCAACAATGTCA 58.359 39.130 0.00 0.00 0.00 3.58
523 617 3.780902 AGTGCAAAGAAAACGAAAAGGG 58.219 40.909 0.00 0.00 0.00 3.95
532 626 1.073098 AACGAAAAGGGTGGGGAGAT 58.927 50.000 0.00 0.00 0.00 2.75
539 638 0.327000 AGGGTGGGGAGATGAGAAGG 60.327 60.000 0.00 0.00 0.00 3.46
548 807 2.233922 GGAGATGAGAAGGGACAAACGA 59.766 50.000 0.00 0.00 0.00 3.85
560 819 0.935196 ACAAACGAAGACGCTTCACC 59.065 50.000 16.26 0.00 43.96 4.02
563 822 0.600255 AACGAAGACGCTTCACCAGG 60.600 55.000 16.26 0.00 43.96 4.45
590 849 3.932580 GACACGTGGCAGCCGATCA 62.933 63.158 18.77 0.00 0.00 2.92
598 857 1.375908 GCAGCCGATCAAGGTGACA 60.376 57.895 14.33 0.00 0.00 3.58
614 873 0.108329 GACAGACACGGTACATGGGG 60.108 60.000 0.00 0.00 0.00 4.96
648 907 9.540538 TCCATTTTGATCATTTTCCTTTACCTA 57.459 29.630 0.00 0.00 0.00 3.08
655 914 6.431198 TCATTTTCCTTTACCTATTGACGC 57.569 37.500 0.00 0.00 0.00 5.19
669 928 0.800012 TGACGCCTTTATGTTTCGGC 59.200 50.000 0.00 0.00 39.14 5.54
884 1151 2.579738 GCTCCAACGTCTCCTCCC 59.420 66.667 0.00 0.00 0.00 4.30
908 1176 3.561241 GAATCCCCTCCGCCTCCC 61.561 72.222 0.00 0.00 0.00 4.30
909 1177 4.109656 AATCCCCTCCGCCTCCCT 62.110 66.667 0.00 0.00 0.00 4.20
914 1182 3.474570 CCTCCGCCTCCCTCTTGG 61.475 72.222 0.00 0.00 0.00 3.61
1299 1574 1.377463 CGTCACCGACCTCTCCTCT 60.377 63.158 0.00 0.00 35.63 3.69
1321 1596 1.880819 TACCGAGACCACGCTTTCCC 61.881 60.000 0.00 0.00 0.00 3.97
1468 1743 0.938192 TTTGGGGACTTTTCTGGGGT 59.062 50.000 0.00 0.00 0.00 4.95
1482 1757 4.617253 TCTGGGGTATTTATGTCATCGG 57.383 45.455 0.00 0.00 0.00 4.18
1548 1823 3.780294 AGCCCCGCCTTATCATATTCATA 59.220 43.478 0.00 0.00 0.00 2.15
1581 1856 4.472691 TGATAGCGAATATGCTTGCAAC 57.527 40.909 0.00 0.00 44.46 4.17
1594 1869 5.369685 TGCTTGCAACTTCGATCAAAATA 57.630 34.783 0.00 0.00 0.00 1.40
1718 1993 0.324614 TGGTGGCTGGTGATACACTG 59.675 55.000 0.00 0.00 34.40 3.66
1845 2120 4.140829 AGGAGATCCATACTCATCAGGTCA 60.141 45.833 0.92 0.00 38.89 4.02
2752 3032 4.937015 TGCGTAGGTTTATTAAGGTTCCAC 59.063 41.667 0.00 0.00 0.00 4.02
2754 3034 5.645067 GCGTAGGTTTATTAAGGTTCCACTT 59.355 40.000 0.00 0.00 34.52 3.16
2827 3107 0.673985 TGTGTGTCGTCTTCCTGGAG 59.326 55.000 0.00 0.00 0.00 3.86
2867 3148 8.754230 AAGTTTTAGTATCGTCAAGTCCTAAC 57.246 34.615 0.00 0.00 0.00 2.34
4718 5025 3.893753 TTCCCCTCTGAATTTGGAACA 57.106 42.857 0.00 0.00 30.40 3.18
4719 5026 4.402616 TTCCCCTCTGAATTTGGAACAT 57.597 40.909 0.00 0.00 39.30 2.71
4720 5027 3.700538 TCCCCTCTGAATTTGGAACATG 58.299 45.455 0.00 0.00 39.30 3.21
4721 5028 3.333381 TCCCCTCTGAATTTGGAACATGA 59.667 43.478 0.00 0.00 39.30 3.07
4722 5029 4.017222 TCCCCTCTGAATTTGGAACATGAT 60.017 41.667 0.00 0.00 39.30 2.45
4723 5030 4.098960 CCCCTCTGAATTTGGAACATGATG 59.901 45.833 0.00 0.00 39.30 3.07
5511 6130 2.485124 GGATGCAGACCAAGATCAGGAG 60.485 54.545 10.82 2.55 0.00 3.69
5512 6131 0.907486 TGCAGACCAAGATCAGGAGG 59.093 55.000 10.82 1.70 0.00 4.30
5513 6132 0.463474 GCAGACCAAGATCAGGAGGC 60.463 60.000 10.82 7.28 0.00 4.70
5514 6133 0.907486 CAGACCAAGATCAGGAGGCA 59.093 55.000 10.82 0.00 0.00 4.75
5515 6134 1.489649 CAGACCAAGATCAGGAGGCAT 59.510 52.381 10.82 0.00 0.00 4.40
5516 6135 2.092538 CAGACCAAGATCAGGAGGCATT 60.093 50.000 10.82 0.00 0.00 3.56
5517 6136 2.172293 AGACCAAGATCAGGAGGCATTC 59.828 50.000 10.82 0.00 0.00 2.67
5518 6137 2.172293 GACCAAGATCAGGAGGCATTCT 59.828 50.000 10.82 0.00 0.00 2.40
5519 6138 2.092538 ACCAAGATCAGGAGGCATTCTG 60.093 50.000 0.00 0.00 0.00 3.02
5520 6139 1.948145 CAAGATCAGGAGGCATTCTGC 59.052 52.381 0.48 0.00 44.08 4.26
5521 6140 1.509373 AGATCAGGAGGCATTCTGCT 58.491 50.000 0.48 0.00 45.48 4.24
5522 6141 1.417145 AGATCAGGAGGCATTCTGCTC 59.583 52.381 0.48 1.45 42.55 4.26
5523 6142 0.473326 ATCAGGAGGCATTCTGCTCC 59.527 55.000 0.48 0.00 42.55 4.70
5524 6143 1.523258 CAGGAGGCATTCTGCTCCG 60.523 63.158 0.00 0.00 42.55 4.63
5525 6144 1.687146 AGGAGGCATTCTGCTCCGA 60.687 57.895 0.00 0.00 40.29 4.55
5526 6145 1.522580 GGAGGCATTCTGCTCCGAC 60.523 63.158 0.00 0.00 44.28 4.79
5527 6146 1.219124 GAGGCATTCTGCTCCGACA 59.781 57.895 0.00 0.00 44.28 4.35
5528 6147 0.391661 GAGGCATTCTGCTCCGACAA 60.392 55.000 0.00 0.00 44.28 3.18
5529 6148 0.392193 AGGCATTCTGCTCCGACAAG 60.392 55.000 0.00 0.00 44.28 3.16
5530 6149 1.372087 GGCATTCTGCTCCGACAAGG 61.372 60.000 0.00 0.00 44.28 3.61
5542 6161 4.451629 TCCGACAAGGAGAATTCTACAC 57.548 45.455 19.99 8.15 45.98 2.90
5543 6162 3.194968 TCCGACAAGGAGAATTCTACACC 59.805 47.826 19.99 11.60 45.98 4.16
5544 6163 3.195825 CCGACAAGGAGAATTCTACACCT 59.804 47.826 19.99 13.69 45.00 4.00
5545 6164 4.401519 CCGACAAGGAGAATTCTACACCTA 59.598 45.833 19.99 0.00 45.00 3.08
5546 6165 5.069251 CCGACAAGGAGAATTCTACACCTAT 59.931 44.000 19.99 8.82 45.00 2.57
5547 6166 6.264744 CCGACAAGGAGAATTCTACACCTATA 59.735 42.308 19.99 0.00 45.00 1.31
5548 6167 7.039644 CCGACAAGGAGAATTCTACACCTATAT 60.040 40.741 19.99 6.28 45.00 0.86
5549 6168 8.024285 CGACAAGGAGAATTCTACACCTATATC 58.976 40.741 19.99 12.73 0.00 1.63
5550 6169 9.084533 GACAAGGAGAATTCTACACCTATATCT 57.915 37.037 19.99 0.00 0.00 1.98
5554 6173 9.747898 AGGAGAATTCTACACCTATATCTACAG 57.252 37.037 19.99 0.00 0.00 2.74
5555 6174 8.962679 GGAGAATTCTACACCTATATCTACAGG 58.037 40.741 13.13 0.00 37.97 4.00
5556 6175 9.742144 GAGAATTCTACACCTATATCTACAGGA 57.258 37.037 8.25 0.00 35.76 3.86
5557 6176 9.747898 AGAATTCTACACCTATATCTACAGGAG 57.252 37.037 6.06 0.00 35.76 3.69
5558 6177 8.887264 AATTCTACACCTATATCTACAGGAGG 57.113 38.462 0.00 0.00 35.76 4.30
5559 6178 7.403837 TTCTACACCTATATCTACAGGAGGT 57.596 40.000 0.00 0.00 41.28 3.85
5560 6179 8.515927 TTCTACACCTATATCTACAGGAGGTA 57.484 38.462 0.00 0.00 38.49 3.08
5561 6180 8.697155 TCTACACCTATATCTACAGGAGGTAT 57.303 38.462 0.00 0.00 38.49 2.73
5562 6181 8.549731 TCTACACCTATATCTACAGGAGGTATG 58.450 40.741 0.00 0.00 38.49 2.39
5563 6182 7.344599 ACACCTATATCTACAGGAGGTATGA 57.655 40.000 0.00 0.00 38.49 2.15
5564 6183 7.766628 ACACCTATATCTACAGGAGGTATGAA 58.233 38.462 0.00 0.00 38.49 2.57
5565 6184 8.232412 ACACCTATATCTACAGGAGGTATGAAA 58.768 37.037 0.00 0.00 38.49 2.69
5566 6185 8.744652 CACCTATATCTACAGGAGGTATGAAAG 58.255 40.741 0.00 0.00 38.49 2.62
5567 6186 7.397761 ACCTATATCTACAGGAGGTATGAAAGC 59.602 40.741 0.00 0.00 38.77 3.51
5568 6187 4.592485 ATCTACAGGAGGTATGAAAGCG 57.408 45.455 0.00 0.00 0.00 4.68
5569 6188 3.628008 TCTACAGGAGGTATGAAAGCGA 58.372 45.455 0.00 0.00 0.00 4.93
5570 6189 2.969628 ACAGGAGGTATGAAAGCGAG 57.030 50.000 0.00 0.00 0.00 5.03
5571 6190 2.457598 ACAGGAGGTATGAAAGCGAGA 58.542 47.619 0.00 0.00 0.00 4.04
5572 6191 2.832129 ACAGGAGGTATGAAAGCGAGAA 59.168 45.455 0.00 0.00 0.00 2.87
5573 6192 3.118956 ACAGGAGGTATGAAAGCGAGAAG 60.119 47.826 0.00 0.00 0.00 2.85
5574 6193 3.100671 AGGAGGTATGAAAGCGAGAAGT 58.899 45.455 0.00 0.00 0.00 3.01
5575 6194 3.515901 AGGAGGTATGAAAGCGAGAAGTT 59.484 43.478 0.00 0.00 0.00 2.66
5576 6195 3.619038 GGAGGTATGAAAGCGAGAAGTTG 59.381 47.826 0.00 0.00 0.00 3.16
5577 6196 4.246458 GAGGTATGAAAGCGAGAAGTTGT 58.754 43.478 0.00 0.00 0.00 3.32
5578 6197 4.246458 AGGTATGAAAGCGAGAAGTTGTC 58.754 43.478 0.00 0.00 0.00 3.18
5579 6198 4.021016 AGGTATGAAAGCGAGAAGTTGTCT 60.021 41.667 0.00 0.00 40.25 3.41
5580 6199 4.691216 GGTATGAAAGCGAGAAGTTGTCTT 59.309 41.667 0.00 0.00 36.41 3.01
5591 6210 3.729966 GAAGTTGTCTTCCGAAGAACCT 58.270 45.455 12.50 6.11 42.85 3.50
5592 6211 3.113260 AGTTGTCTTCCGAAGAACCTG 57.887 47.619 12.50 0.00 39.67 4.00
5593 6212 2.434702 AGTTGTCTTCCGAAGAACCTGT 59.565 45.455 12.50 0.00 39.67 4.00
5594 6213 3.118371 AGTTGTCTTCCGAAGAACCTGTT 60.118 43.478 12.50 0.00 39.67 3.16
5595 6214 3.107642 TGTCTTCCGAAGAACCTGTTC 57.892 47.619 12.50 1.75 39.67 3.18
5596 6215 2.224209 TGTCTTCCGAAGAACCTGTTCC 60.224 50.000 12.50 0.00 39.67 3.62
5597 6216 1.346722 TCTTCCGAAGAACCTGTTCCC 59.653 52.381 8.45 0.00 40.33 3.97
5598 6217 1.071699 CTTCCGAAGAACCTGTTCCCA 59.928 52.381 1.51 0.00 40.33 4.37
5599 6218 0.685097 TCCGAAGAACCTGTTCCCAG 59.315 55.000 6.41 0.00 40.33 4.45
5600 6219 0.396811 CCGAAGAACCTGTTCCCAGT 59.603 55.000 6.41 0.00 40.33 4.00
5601 6220 1.512926 CGAAGAACCTGTTCCCAGTG 58.487 55.000 6.41 0.00 40.33 3.66
5602 6221 1.878102 CGAAGAACCTGTTCCCAGTGG 60.878 57.143 0.63 0.63 40.33 4.00
5603 6222 1.420138 GAAGAACCTGTTCCCAGTGGA 59.580 52.381 11.95 0.00 40.33 4.02
5604 6223 1.747444 AGAACCTGTTCCCAGTGGAT 58.253 50.000 11.95 0.00 41.40 3.41
5605 6224 1.352352 AGAACCTGTTCCCAGTGGATG 59.648 52.381 11.95 0.00 41.40 3.51
5606 6225 0.251341 AACCTGTTCCCAGTGGATGC 60.251 55.000 11.95 0.00 41.40 3.91
5607 6226 1.379916 CCTGTTCCCAGTGGATGCA 59.620 57.895 11.95 5.07 41.40 3.96
5608 6227 0.679002 CCTGTTCCCAGTGGATGCAG 60.679 60.000 11.95 14.25 41.40 4.41
5609 6228 0.325933 CTGTTCCCAGTGGATGCAGA 59.674 55.000 11.95 0.00 42.20 4.26
5610 6229 0.036732 TGTTCCCAGTGGATGCAGAC 59.963 55.000 11.95 0.43 41.40 3.51
5611 6230 0.678048 GTTCCCAGTGGATGCAGACC 60.678 60.000 11.95 5.86 41.40 3.85
5612 6231 1.133181 TTCCCAGTGGATGCAGACCA 61.133 55.000 11.95 10.75 41.40 4.02
5613 6232 1.133181 TCCCAGTGGATGCAGACCAA 61.133 55.000 11.95 0.00 39.22 3.67
5614 6233 0.679002 CCCAGTGGATGCAGACCAAG 60.679 60.000 11.95 11.49 39.22 3.61
5615 6234 0.325933 CCAGTGGATGCAGACCAAGA 59.674 55.000 15.44 0.00 39.22 3.02
5616 6235 1.064906 CCAGTGGATGCAGACCAAGAT 60.065 52.381 15.44 4.34 39.22 2.40
5617 6236 2.286872 CAGTGGATGCAGACCAAGATC 58.713 52.381 15.44 5.29 39.22 2.75
5618 6237 1.911357 AGTGGATGCAGACCAAGATCA 59.089 47.619 15.44 0.00 39.22 2.92
5619 6238 2.093075 AGTGGATGCAGACCAAGATCAG 60.093 50.000 15.44 0.00 39.22 2.90
5620 6239 1.211212 TGGATGCAGACCAAGATCAGG 59.789 52.381 12.13 0.00 34.25 3.86
5621 6240 1.487976 GGATGCAGACCAAGATCAGGA 59.512 52.381 10.82 0.00 0.00 3.86
5949 6571 4.868450 TTTTCGAGAAAACGCAAAGAGA 57.132 36.364 6.89 0.00 35.57 3.10
5950 6572 5.418310 TTTTCGAGAAAACGCAAAGAGAT 57.582 34.783 6.89 0.00 35.57 2.75
5951 6573 5.418310 TTTCGAGAAAACGCAAAGAGATT 57.582 34.783 0.00 0.00 0.00 2.40
5952 6574 5.418310 TTCGAGAAAACGCAAAGAGATTT 57.582 34.783 0.00 0.00 0.00 2.17
5953 6575 5.418310 TCGAGAAAACGCAAAGAGATTTT 57.582 34.783 0.00 0.00 0.00 1.82
5954 6576 5.816919 TCGAGAAAACGCAAAGAGATTTTT 58.183 33.333 0.00 0.00 0.00 1.94
5955 6577 5.681105 TCGAGAAAACGCAAAGAGATTTTTG 59.319 36.000 0.00 0.00 40.25 2.44
5966 6588 6.992766 CAAAGAGATTTTTGCGTTTCTTTGT 58.007 32.000 13.69 0.00 42.92 2.83
5967 6589 8.114359 CAAAGAGATTTTTGCGTTTCTTTGTA 57.886 30.769 13.69 0.00 42.92 2.41
5968 6590 8.755018 CAAAGAGATTTTTGCGTTTCTTTGTAT 58.245 29.630 13.69 0.00 42.92 2.29
5969 6591 8.871686 AAGAGATTTTTGCGTTTCTTTGTATT 57.128 26.923 0.00 0.00 0.00 1.89
5970 6592 8.285776 AGAGATTTTTGCGTTTCTTTGTATTG 57.714 30.769 0.00 0.00 0.00 1.90
5971 6593 8.134895 AGAGATTTTTGCGTTTCTTTGTATTGA 58.865 29.630 0.00 0.00 0.00 2.57
5972 6594 8.641499 AGATTTTTGCGTTTCTTTGTATTGAA 57.359 26.923 0.00 0.00 0.00 2.69
5973 6595 9.092876 AGATTTTTGCGTTTCTTTGTATTGAAA 57.907 25.926 0.00 0.00 0.00 2.69
5974 6596 9.695884 GATTTTTGCGTTTCTTTGTATTGAAAA 57.304 25.926 0.00 0.00 34.52 2.29
5975 6597 9.701355 ATTTTTGCGTTTCTTTGTATTGAAAAG 57.299 25.926 0.00 0.00 34.52 2.27
5976 6598 8.467402 TTTTGCGTTTCTTTGTATTGAAAAGA 57.533 26.923 0.00 0.00 40.88 2.52
5977 6599 8.641499 TTTGCGTTTCTTTGTATTGAAAAGAT 57.359 26.923 0.00 0.00 41.86 2.40
5978 6600 9.737427 TTTGCGTTTCTTTGTATTGAAAAGATA 57.263 25.926 0.00 0.00 41.86 1.98
5979 6601 8.948853 TGCGTTTCTTTGTATTGAAAAGATAG 57.051 30.769 0.00 0.00 41.86 2.08
5980 6602 8.020819 TGCGTTTCTTTGTATTGAAAAGATAGG 58.979 33.333 0.00 3.08 41.86 2.57
5981 6603 7.484959 GCGTTTCTTTGTATTGAAAAGATAGGG 59.515 37.037 0.00 0.00 41.86 3.53
5982 6604 8.512138 CGTTTCTTTGTATTGAAAAGATAGGGT 58.488 33.333 0.00 0.00 41.86 4.34
5997 6619 9.990868 AAAAGATAGGGTTTATGTTACAATCCT 57.009 29.630 0.00 0.00 0.00 3.24
5998 6620 9.628500 AAAGATAGGGTTTATGTTACAATCCTC 57.372 33.333 0.00 0.00 0.00 3.71
5999 6621 7.746703 AGATAGGGTTTATGTTACAATCCTCC 58.253 38.462 0.00 0.00 0.00 4.30
6000 6622 7.572861 AGATAGGGTTTATGTTACAATCCTCCT 59.427 37.037 0.00 0.00 0.00 3.69
6001 6623 8.808240 ATAGGGTTTATGTTACAATCCTCCTA 57.192 34.615 8.63 8.63 0.00 2.94
6002 6624 7.138054 AGGGTTTATGTTACAATCCTCCTAG 57.862 40.000 0.00 0.00 0.00 3.02
6003 6625 6.101296 AGGGTTTATGTTACAATCCTCCTAGG 59.899 42.308 0.82 0.82 36.46 3.02
6017 6639 4.237976 CTCCTAGGAGGTACAGAACTGA 57.762 50.000 28.68 0.00 38.51 3.41
6018 6640 4.798882 CTCCTAGGAGGTACAGAACTGAT 58.201 47.826 28.68 0.00 38.51 2.90
6019 6641 4.537751 TCCTAGGAGGTACAGAACTGATG 58.462 47.826 7.62 0.00 36.53 3.07
6020 6642 4.229812 TCCTAGGAGGTACAGAACTGATGA 59.770 45.833 7.62 0.00 36.53 2.92
6021 6643 5.103473 TCCTAGGAGGTACAGAACTGATGAT 60.103 44.000 7.62 0.00 36.53 2.45
6022 6644 5.010516 CCTAGGAGGTACAGAACTGATGATG 59.989 48.000 1.05 0.00 0.00 3.07
6023 6645 4.614475 AGGAGGTACAGAACTGATGATGA 58.386 43.478 8.87 0.00 0.00 2.92
6024 6646 5.026121 AGGAGGTACAGAACTGATGATGAA 58.974 41.667 8.87 0.00 0.00 2.57
6025 6647 5.485353 AGGAGGTACAGAACTGATGATGAAA 59.515 40.000 8.87 0.00 0.00 2.69
6026 6648 6.013379 AGGAGGTACAGAACTGATGATGAAAA 60.013 38.462 8.87 0.00 0.00 2.29
6027 6649 6.314896 GGAGGTACAGAACTGATGATGAAAAG 59.685 42.308 8.87 0.00 0.00 2.27
6028 6650 7.009179 AGGTACAGAACTGATGATGAAAAGA 57.991 36.000 8.87 0.00 0.00 2.52
6029 6651 7.628234 AGGTACAGAACTGATGATGAAAAGAT 58.372 34.615 8.87 0.00 0.00 2.40
6030 6652 8.762645 AGGTACAGAACTGATGATGAAAAGATA 58.237 33.333 8.87 0.00 0.00 1.98
6031 6653 9.553064 GGTACAGAACTGATGATGAAAAGATAT 57.447 33.333 8.87 0.00 0.00 1.63
6034 6656 9.902684 ACAGAACTGATGATGAAAAGATATCTT 57.097 29.630 12.37 12.37 37.91 2.40
6394 7064 1.929836 CTCATTCGGTTGAGCTGCTAC 59.070 52.381 0.15 0.00 36.96 3.58
6402 7072 2.417515 GGTTGAGCTGCTACTCACTACC 60.418 54.545 0.15 10.49 46.13 3.18
6455 7125 8.765517 ACAATCATCTCATGCTATGATGGTATA 58.234 33.333 20.26 4.82 42.41 1.47
6488 7161 7.432350 AGAATTGAGCTTCTGTAACTTTCAG 57.568 36.000 0.00 0.00 34.22 3.02
6568 7245 1.858091 ACTGAACTGACTTGACTGCG 58.142 50.000 0.00 0.00 0.00 5.18
6641 7325 1.110442 AGTGATGAGGGAGCTCGAAG 58.890 55.000 7.83 0.00 0.00 3.79
6754 7438 0.247736 GGATCCACGTGCAGAGTTCT 59.752 55.000 10.91 0.00 0.00 3.01
6821 7505 0.169230 AACGCAACGCAACAGTGAAA 59.831 45.000 0.00 0.00 0.00 2.69
6865 7549 0.529378 CCTTCAACTCAATGCTGGCC 59.471 55.000 0.00 0.00 0.00 5.36
6871 7555 1.289160 ACTCAATGCTGGCCCTCTTA 58.711 50.000 0.00 0.00 0.00 2.10
6916 7600 0.178891 TCTCCCCAAGAAGCCTCACT 60.179 55.000 0.00 0.00 0.00 3.41
6946 7630 2.633509 CCCGAAGACCGAAGACCGT 61.634 63.158 0.00 0.00 41.76 4.83
6947 7631 1.308069 CCCGAAGACCGAAGACCGTA 61.308 60.000 0.00 0.00 41.76 4.02
6988 7672 0.761187 TCAACAAGCTGAGAGGCAGT 59.239 50.000 0.00 0.00 46.62 4.40
7463 8147 4.335647 ACTGCGTTGCCCTCCTGG 62.336 66.667 0.00 0.00 37.09 4.45
7625 8349 5.178252 CGAGAATGTGAACATGACAAGTCTT 59.822 40.000 0.00 0.00 36.56 3.01
7626 8350 6.309712 AGAATGTGAACATGACAAGTCTTG 57.690 37.500 11.17 11.17 39.69 3.02
7627 8351 5.240183 AGAATGTGAACATGACAAGTCTTGG 59.760 40.000 16.85 1.60 38.58 3.61
7725 8449 1.683385 TCTGTCCCATCAGCTGATACG 59.317 52.381 28.27 20.00 35.63 3.06
7728 8452 1.961394 GTCCCATCAGCTGATACGGTA 59.039 52.381 28.27 11.35 32.63 4.02
7730 8454 2.364324 TCCCATCAGCTGATACGGTAAC 59.636 50.000 28.27 0.00 32.63 2.50
7732 8456 3.181465 CCCATCAGCTGATACGGTAACTT 60.181 47.826 28.27 0.61 32.63 2.66
7815 8539 1.596934 GGGCTCACCTCATCACGAA 59.403 57.895 0.00 0.00 35.85 3.85
7830 8554 6.851609 TCATCACGAACCTTGGATTTTAATG 58.148 36.000 0.00 0.00 0.00 1.90
7836 8560 5.737290 CGAACCTTGGATTTTAATGTTAGCG 59.263 40.000 0.00 0.00 0.00 4.26
7864 8590 3.069586 CCGTAGATTCCTAACAGATGGCA 59.930 47.826 0.00 0.00 0.00 4.92
7890 8617 2.293122 TGTGCGGCATAGGATATTTTGC 59.707 45.455 5.72 0.00 0.00 3.68
7928 8677 2.421424 CTGCTCAGGAATGTTTACTGCC 59.579 50.000 0.00 0.00 32.42 4.85
7929 8678 2.224744 TGCTCAGGAATGTTTACTGCCA 60.225 45.455 0.00 0.00 32.42 4.92
7930 8679 2.421424 GCTCAGGAATGTTTACTGCCAG 59.579 50.000 0.00 0.00 32.42 4.85
7942 8691 7.811117 TGTTTACTGCCAGTACTAAACAATT 57.189 32.000 17.66 0.00 33.66 2.32
8052 8827 4.699522 GGTCGAGCACCACCACCC 62.700 72.222 10.30 0.00 45.98 4.61
8125 8911 2.657237 GTGAGGTGAGGTGACGGG 59.343 66.667 0.00 0.00 0.00 5.28
8378 9317 2.094545 CCACAAAAGCTGCTACCCATTC 60.095 50.000 0.90 0.00 0.00 2.67
8379 9318 2.557924 CACAAAAGCTGCTACCCATTCA 59.442 45.455 0.90 0.00 0.00 2.57
8380 9319 3.194116 CACAAAAGCTGCTACCCATTCAT 59.806 43.478 0.90 0.00 0.00 2.57
8381 9320 3.834231 ACAAAAGCTGCTACCCATTCATT 59.166 39.130 0.90 0.00 0.00 2.57
8382 9321 4.082026 ACAAAAGCTGCTACCCATTCATTC 60.082 41.667 0.90 0.00 0.00 2.67
8383 9322 2.355010 AGCTGCTACCCATTCATTCC 57.645 50.000 0.00 0.00 0.00 3.01
8384 9323 1.133668 AGCTGCTACCCATTCATTCCC 60.134 52.381 0.00 0.00 0.00 3.97
8389 9328 3.308401 GCTACCCATTCATTCCCCATTT 58.692 45.455 0.00 0.00 0.00 2.32
8394 9333 2.239150 CCATTCATTCCCCATTTGCCAA 59.761 45.455 0.00 0.00 0.00 4.52
8411 9350 3.005684 TGCCAATTGCCACTAGACTTTTG 59.994 43.478 0.00 0.00 40.16 2.44
8429 9368 8.573885 AGACTTTTGCTTAACTGTATAAAACCC 58.426 33.333 0.00 0.00 0.00 4.11
8430 9369 8.473358 ACTTTTGCTTAACTGTATAAAACCCT 57.527 30.769 0.00 0.00 0.00 4.34
8431 9370 9.577222 ACTTTTGCTTAACTGTATAAAACCCTA 57.423 29.630 0.00 0.00 0.00 3.53
8434 9373 8.514330 TTGCTTAACTGTATAAAACCCTATGG 57.486 34.615 0.00 0.00 37.80 2.74
8435 9374 7.863722 TGCTTAACTGTATAAAACCCTATGGA 58.136 34.615 0.00 0.00 34.81 3.41
8436 9375 7.771826 TGCTTAACTGTATAAAACCCTATGGAC 59.228 37.037 0.00 0.00 34.81 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 4.782019 TTGCATTTAACCATGTCCACTC 57.218 40.909 0.00 0.00 0.00 3.51
44 45 1.076332 GTGTCATTGCACCGTAGACC 58.924 55.000 0.00 0.00 33.53 3.85
48 49 3.671008 ACTTAGTGTCATTGCACCGTA 57.329 42.857 0.00 0.00 40.04 4.02
163 166 0.104855 TGGCGCTCTATGCTACAAGG 59.895 55.000 7.64 0.00 40.11 3.61
165 168 0.179084 GGTGGCGCTCTATGCTACAA 60.179 55.000 7.64 0.00 44.60 2.41
181 184 1.455587 ACAGTGTTGCAAGGGGGTG 60.456 57.895 0.00 0.00 0.00 4.61
196 199 1.604278 CTGATGGCATGCTCATCACAG 59.396 52.381 31.24 23.70 43.98 3.66
210 213 2.880268 TGTTGCTGTGAAAGACTGATGG 59.120 45.455 0.00 0.00 0.00 3.51
211 214 3.313249 TGTGTTGCTGTGAAAGACTGATG 59.687 43.478 0.00 0.00 0.00 3.07
219 222 5.451242 GGGAGTTATTTGTGTTGCTGTGAAA 60.451 40.000 0.00 0.00 0.00 2.69
226 229 5.715434 TTTAGGGGAGTTATTTGTGTTGC 57.285 39.130 0.00 0.00 0.00 4.17
229 232 6.370453 AGTGTTTTAGGGGAGTTATTTGTGT 58.630 36.000 0.00 0.00 0.00 3.72
233 236 6.663523 CCATGAGTGTTTTAGGGGAGTTATTT 59.336 38.462 0.00 0.00 0.00 1.40
261 264 3.202151 TCCCTACCTAATGCAAGAAAGGG 59.798 47.826 14.50 14.50 38.64 3.95
266 269 3.101437 TCGTTCCCTACCTAATGCAAGA 58.899 45.455 0.00 0.00 0.00 3.02
268 271 2.419574 GCTCGTTCCCTACCTAATGCAA 60.420 50.000 0.00 0.00 0.00 4.08
269 272 1.138266 GCTCGTTCCCTACCTAATGCA 59.862 52.381 0.00 0.00 0.00 3.96
270 273 1.540580 GGCTCGTTCCCTACCTAATGC 60.541 57.143 0.00 0.00 0.00 3.56
271 274 1.070289 GGGCTCGTTCCCTACCTAATG 59.930 57.143 7.36 0.00 43.13 1.90
272 275 1.421480 GGGCTCGTTCCCTACCTAAT 58.579 55.000 7.36 0.00 43.13 1.73
273 276 2.906268 GGGCTCGTTCCCTACCTAA 58.094 57.895 7.36 0.00 43.13 2.69
280 283 3.056328 GTTGCAGGGCTCGTTCCC 61.056 66.667 6.63 6.63 46.93 3.97
281 284 1.648467 GATGTTGCAGGGCTCGTTCC 61.648 60.000 0.00 0.00 0.00 3.62
291 294 1.666888 GGTTCGCCTTTGATGTTGCAG 60.667 52.381 0.00 0.00 0.00 4.41
304 307 1.937546 CTGGATTGCAAGGGTTCGCC 61.938 60.000 4.94 0.00 0.00 5.54
309 312 2.610438 ATTGTCTGGATTGCAAGGGT 57.390 45.000 4.94 0.00 0.00 4.34
322 325 4.406003 AGGACTAACCATCGCTTATTGTCT 59.594 41.667 0.00 0.00 42.04 3.41
327 330 6.481434 ACTTTAGGACTAACCATCGCTTAT 57.519 37.500 0.00 0.00 42.04 1.73
328 331 5.927281 ACTTTAGGACTAACCATCGCTTA 57.073 39.130 0.00 0.00 42.04 3.09
329 332 4.820894 ACTTTAGGACTAACCATCGCTT 57.179 40.909 0.00 0.00 42.04 4.68
333 336 5.280164 GTCGCTACTTTAGGACTAACCATC 58.720 45.833 0.00 0.00 42.04 3.51
334 337 4.099113 GGTCGCTACTTTAGGACTAACCAT 59.901 45.833 0.00 0.00 42.04 3.55
347 350 3.400054 GGGGCAGGGTCGCTACTT 61.400 66.667 0.00 0.00 0.00 2.24
372 375 0.519519 CCTGCTCTCTATCGTAGGCG 59.480 60.000 0.00 0.00 39.92 5.52
379 382 3.181456 ACAATTGCCTCCTGCTCTCTATC 60.181 47.826 5.05 0.00 42.00 2.08
386 389 2.558359 GTTGTAACAATTGCCTCCTGCT 59.442 45.455 5.05 0.00 42.00 4.24
447 450 4.286297 AGCTACTACTTCCATTTGCACA 57.714 40.909 0.00 0.00 0.00 4.57
448 451 4.672801 GCAAGCTACTACTTCCATTTGCAC 60.673 45.833 0.00 0.00 39.41 4.57
449 452 3.440173 GCAAGCTACTACTTCCATTTGCA 59.560 43.478 0.00 0.00 39.41 4.08
479 482 4.095632 TCTTCGTTTGCAAGTCAACAATGA 59.904 37.500 0.00 0.00 33.73 2.57
481 484 4.096382 ACTCTTCGTTTGCAAGTCAACAAT 59.904 37.500 0.00 0.00 33.73 2.71
495 498 3.372822 TCGTTTTCTTTGCACTCTTCGTT 59.627 39.130 0.00 0.00 0.00 3.85
497 500 3.585748 TCGTTTTCTTTGCACTCTTCG 57.414 42.857 0.00 0.00 0.00 3.79
498 501 5.230097 CCTTTTCGTTTTCTTTGCACTCTTC 59.770 40.000 0.00 0.00 0.00 2.87
523 617 0.833949 GTCCCTTCTCATCTCCCCAC 59.166 60.000 0.00 0.00 0.00 4.61
532 626 2.545113 CGTCTTCGTTTGTCCCTTCTCA 60.545 50.000 0.00 0.00 0.00 3.27
539 638 1.070776 GTGAAGCGTCTTCGTTTGTCC 60.071 52.381 12.71 0.00 40.26 4.02
548 807 2.032681 GGCCTGGTGAAGCGTCTT 59.967 61.111 0.00 0.00 0.00 3.01
560 819 2.751436 CGTGTCCCCATTGGCCTG 60.751 66.667 3.32 0.00 0.00 4.85
563 822 3.061848 CCACGTGTCCCCATTGGC 61.062 66.667 15.65 0.00 0.00 4.52
590 849 1.405872 TGTACCGTGTCTGTCACCTT 58.594 50.000 0.00 0.00 43.51 3.50
598 857 1.899437 CTGCCCCATGTACCGTGTCT 61.899 60.000 0.00 0.00 0.00 3.41
614 873 2.083774 TGATCAAAATGGACCGACTGC 58.916 47.619 0.00 0.00 0.00 4.40
648 907 2.159435 GCCGAAACATAAAGGCGTCAAT 60.159 45.455 0.00 0.00 40.17 2.57
655 914 1.083489 TCTGCGCCGAAACATAAAGG 58.917 50.000 4.18 0.00 0.00 3.11
669 928 5.886715 TCACAAAAATGTCAAATTCTGCG 57.113 34.783 0.00 0.00 0.00 5.18
700 959 9.191479 TCCTTTTTCTACAACACCATTTTCTAA 57.809 29.630 0.00 0.00 0.00 2.10
718 977 6.374333 GGGCCCATTTTCTATTTTCCTTTTTC 59.626 38.462 19.95 0.00 0.00 2.29
731 993 1.978617 CTGTGCGGGCCCATTTTCT 60.979 57.895 24.92 0.00 0.00 2.52
884 1151 1.166531 GCGGAGGGGATTCGAAATGG 61.167 60.000 0.00 0.00 0.00 3.16
908 1176 1.069227 GTGTAAAACGCAGCCCAAGAG 60.069 52.381 0.00 0.00 0.00 2.85
909 1177 0.948678 GTGTAAAACGCAGCCCAAGA 59.051 50.000 0.00 0.00 0.00 3.02
1468 1743 6.645306 TCCAAGTGAACCGATGACATAAATA 58.355 36.000 0.00 0.00 0.00 1.40
1514 1789 0.393808 GCGGGGCTAATCCTGACAAA 60.394 55.000 0.00 0.00 35.18 2.83
1548 1823 1.072159 GCTATCATCGCAGGCCCTT 59.928 57.895 0.00 0.00 0.00 3.95
1964 2239 4.042062 TGATGAGTTCTTGTCTCCATTGGT 59.958 41.667 1.86 0.00 0.00 3.67
2443 2723 4.946157 CAGAATTACAGAAAGACAGGGCAT 59.054 41.667 0.00 0.00 0.00 4.40
2664 2944 0.898320 CAGGAGTCACCGGTGAAGAT 59.102 55.000 37.75 25.93 41.85 2.40
2752 3032 7.414540 GCATCTTTACATTACCACTGGAAGAAG 60.415 40.741 0.71 0.00 37.43 2.85
2754 3034 5.880332 GCATCTTTACATTACCACTGGAAGA 59.120 40.000 0.71 0.00 37.43 2.87
2795 3075 5.293569 AGACGACACACAAAAAGTTCCTTAG 59.706 40.000 0.00 0.00 0.00 2.18
2867 3148 4.755123 AGGTTGGTTCAGTATCAACTTTCG 59.245 41.667 3.45 0.00 40.20 3.46
4718 5025 4.916041 TCACCCTCTGAAAAGTCATCAT 57.084 40.909 0.00 0.00 31.85 2.45
4719 5026 4.705110 TTCACCCTCTGAAAAGTCATCA 57.295 40.909 0.00 0.00 35.84 3.07
5513 6132 3.840831 TCCTTGTCGGAGCAGAATG 57.159 52.632 0.00 0.00 36.69 2.67
5521 6140 3.194968 GGTGTAGAATTCTCCTTGTCGGA 59.805 47.826 12.24 0.00 40.30 4.55
5522 6141 3.195825 AGGTGTAGAATTCTCCTTGTCGG 59.804 47.826 12.24 0.00 0.00 4.79
5523 6142 4.457834 AGGTGTAGAATTCTCCTTGTCG 57.542 45.455 12.24 0.00 0.00 4.35
5524 6143 9.084533 AGATATAGGTGTAGAATTCTCCTTGTC 57.915 37.037 16.93 12.82 32.23 3.18
5528 6147 9.747898 CTGTAGATATAGGTGTAGAATTCTCCT 57.252 37.037 12.24 14.68 34.01 3.69
5529 6148 8.962679 CCTGTAGATATAGGTGTAGAATTCTCC 58.037 40.741 12.24 7.42 30.75 3.71
5530 6149 9.742144 TCCTGTAGATATAGGTGTAGAATTCTC 57.258 37.037 12.24 4.68 36.16 2.87
5531 6150 9.747898 CTCCTGTAGATATAGGTGTAGAATTCT 57.252 37.037 13.56 13.56 36.16 2.40
5532 6151 8.962679 CCTCCTGTAGATATAGGTGTAGAATTC 58.037 40.741 0.00 0.00 36.16 2.17
5533 6152 8.457757 ACCTCCTGTAGATATAGGTGTAGAATT 58.542 37.037 2.97 0.00 39.10 2.17
5534 6153 8.002431 ACCTCCTGTAGATATAGGTGTAGAAT 57.998 38.462 2.97 0.00 39.10 2.40
5535 6154 7.403837 ACCTCCTGTAGATATAGGTGTAGAA 57.596 40.000 2.97 0.00 39.10 2.10
5536 6155 8.549731 CATACCTCCTGTAGATATAGGTGTAGA 58.450 40.741 0.00 0.00 40.71 2.59
5537 6156 8.549731 TCATACCTCCTGTAGATATAGGTGTAG 58.450 40.741 0.00 0.00 40.71 2.74
5538 6157 8.458951 TCATACCTCCTGTAGATATAGGTGTA 57.541 38.462 0.00 6.46 40.71 2.90
5539 6158 7.344599 TCATACCTCCTGTAGATATAGGTGT 57.655 40.000 0.00 4.80 40.71 4.16
5540 6159 8.651589 TTTCATACCTCCTGTAGATATAGGTG 57.348 38.462 0.00 1.10 40.71 4.00
5541 6160 7.397761 GCTTTCATACCTCCTGTAGATATAGGT 59.602 40.741 2.97 0.00 43.00 3.08
5542 6161 7.415765 CGCTTTCATACCTCCTGTAGATATAGG 60.416 44.444 0.00 0.00 36.07 2.57
5543 6162 7.337184 TCGCTTTCATACCTCCTGTAGATATAG 59.663 40.741 0.00 0.00 31.61 1.31
5544 6163 7.173032 TCGCTTTCATACCTCCTGTAGATATA 58.827 38.462 0.00 0.00 31.61 0.86
5545 6164 6.010850 TCGCTTTCATACCTCCTGTAGATAT 58.989 40.000 0.00 0.00 31.61 1.63
5546 6165 5.382616 TCGCTTTCATACCTCCTGTAGATA 58.617 41.667 0.00 0.00 31.61 1.98
5547 6166 4.215908 TCGCTTTCATACCTCCTGTAGAT 58.784 43.478 0.00 0.00 31.61 1.98
5548 6167 3.628008 TCGCTTTCATACCTCCTGTAGA 58.372 45.455 0.00 0.00 31.61 2.59
5549 6168 3.632604 TCTCGCTTTCATACCTCCTGTAG 59.367 47.826 0.00 0.00 31.61 2.74
5550 6169 3.628008 TCTCGCTTTCATACCTCCTGTA 58.372 45.455 0.00 0.00 0.00 2.74
5551 6170 2.457598 TCTCGCTTTCATACCTCCTGT 58.542 47.619 0.00 0.00 0.00 4.00
5552 6171 3.118956 ACTTCTCGCTTTCATACCTCCTG 60.119 47.826 0.00 0.00 0.00 3.86
5553 6172 3.100671 ACTTCTCGCTTTCATACCTCCT 58.899 45.455 0.00 0.00 0.00 3.69
5554 6173 3.528597 ACTTCTCGCTTTCATACCTCC 57.471 47.619 0.00 0.00 0.00 4.30
5555 6174 4.246458 ACAACTTCTCGCTTTCATACCTC 58.754 43.478 0.00 0.00 0.00 3.85
5556 6175 4.021016 AGACAACTTCTCGCTTTCATACCT 60.021 41.667 0.00 0.00 0.00 3.08
5557 6176 4.246458 AGACAACTTCTCGCTTTCATACC 58.754 43.478 0.00 0.00 0.00 2.73
5558 6177 5.847670 AAGACAACTTCTCGCTTTCATAC 57.152 39.130 0.00 0.00 31.02 2.39
5560 6179 4.999751 GAAGACAACTTCTCGCTTTCAT 57.000 40.909 0.00 0.00 46.19 2.57
5570 6189 8.147996 GAACAGGTTCTTCGGAAGACAACTTC 62.148 46.154 19.55 11.82 42.05 3.01
5571 6190 3.118371 ACAGGTTCTTCGGAAGACAACTT 60.118 43.478 19.55 10.17 41.84 2.66
5572 6191 2.434702 ACAGGTTCTTCGGAAGACAACT 59.565 45.455 19.55 15.06 41.84 3.16
5573 6192 2.835027 ACAGGTTCTTCGGAAGACAAC 58.165 47.619 19.55 15.40 41.84 3.32
5574 6193 3.463944 GAACAGGTTCTTCGGAAGACAA 58.536 45.455 19.55 4.01 41.84 3.18
5575 6194 2.224209 GGAACAGGTTCTTCGGAAGACA 60.224 50.000 19.55 8.85 39.45 3.41
5576 6195 2.414806 GGAACAGGTTCTTCGGAAGAC 58.585 52.381 19.55 14.01 39.45 3.01
5577 6196 1.346722 GGGAACAGGTTCTTCGGAAGA 59.653 52.381 16.19 16.19 39.45 2.87
5578 6197 1.071699 TGGGAACAGGTTCTTCGGAAG 59.928 52.381 11.54 11.54 39.45 3.46
5579 6198 1.133363 TGGGAACAGGTTCTTCGGAA 58.867 50.000 11.56 0.00 39.45 4.30
5580 6199 2.842994 TGGGAACAGGTTCTTCGGA 58.157 52.632 11.56 0.00 39.45 4.55
5595 6214 0.679002 CTTGGTCTGCATCCACTGGG 60.679 60.000 9.80 0.00 34.45 4.45
5596 6215 0.325933 TCTTGGTCTGCATCCACTGG 59.674 55.000 9.80 0.00 34.45 4.00
5597 6216 2.286872 GATCTTGGTCTGCATCCACTG 58.713 52.381 9.80 6.97 34.45 3.66
5598 6217 1.911357 TGATCTTGGTCTGCATCCACT 59.089 47.619 9.80 0.04 34.45 4.00
5599 6218 2.286872 CTGATCTTGGTCTGCATCCAC 58.713 52.381 9.80 0.00 34.45 4.02
5600 6219 1.211212 CCTGATCTTGGTCTGCATCCA 59.789 52.381 6.66 6.66 0.00 3.41
5601 6220 1.487976 TCCTGATCTTGGTCTGCATCC 59.512 52.381 0.00 0.00 0.00 3.51
5602 6221 2.485124 CCTCCTGATCTTGGTCTGCATC 60.485 54.545 0.00 0.00 0.00 3.91
5603 6222 1.489649 CCTCCTGATCTTGGTCTGCAT 59.510 52.381 0.00 0.00 0.00 3.96
5604 6223 0.907486 CCTCCTGATCTTGGTCTGCA 59.093 55.000 0.00 0.00 0.00 4.41
5605 6224 0.463474 GCCTCCTGATCTTGGTCTGC 60.463 60.000 0.00 0.00 0.00 4.26
5606 6225 0.907486 TGCCTCCTGATCTTGGTCTG 59.093 55.000 0.00 0.00 0.00 3.51
5607 6226 1.890552 ATGCCTCCTGATCTTGGTCT 58.109 50.000 0.00 0.00 0.00 3.85
5608 6227 2.172293 AGAATGCCTCCTGATCTTGGTC 59.828 50.000 0.00 0.00 0.00 4.02
5609 6228 2.092538 CAGAATGCCTCCTGATCTTGGT 60.093 50.000 0.00 0.00 32.37 3.67
5610 6229 2.573369 CAGAATGCCTCCTGATCTTGG 58.427 52.381 0.00 0.00 32.37 3.61
5927 6549 5.224562 TCTCTTTGCGTTTTCTCGAAAAA 57.775 34.783 6.41 0.00 41.37 1.94
5928 6550 4.868450 TCTCTTTGCGTTTTCTCGAAAA 57.132 36.364 0.93 0.93 36.21 2.29
5929 6551 5.418310 AATCTCTTTGCGTTTTCTCGAAA 57.582 34.783 0.00 0.00 0.00 3.46
5930 6552 5.418310 AAATCTCTTTGCGTTTTCTCGAA 57.582 34.783 0.00 0.00 0.00 3.71
5932 6554 5.883038 CAAAAATCTCTTTGCGTTTTCTCG 58.117 37.500 0.00 0.00 30.03 4.04
5943 6565 8.871686 ATACAAAGAAACGCAAAAATCTCTTT 57.128 26.923 0.00 0.00 34.34 2.52
5944 6566 8.755018 CAATACAAAGAAACGCAAAAATCTCTT 58.245 29.630 0.00 0.00 0.00 2.85
5945 6567 8.134895 TCAATACAAAGAAACGCAAAAATCTCT 58.865 29.630 0.00 0.00 0.00 3.10
5946 6568 8.280909 TCAATACAAAGAAACGCAAAAATCTC 57.719 30.769 0.00 0.00 0.00 2.75
5947 6569 8.641499 TTCAATACAAAGAAACGCAAAAATCT 57.359 26.923 0.00 0.00 0.00 2.40
5948 6570 9.695884 TTTTCAATACAAAGAAACGCAAAAATC 57.304 25.926 0.00 0.00 33.82 2.17
5949 6571 9.701355 CTTTTCAATACAAAGAAACGCAAAAAT 57.299 25.926 0.00 0.00 33.69 1.82
5950 6572 8.926710 TCTTTTCAATACAAAGAAACGCAAAAA 58.073 25.926 0.00 0.00 37.33 1.94
5951 6573 8.467402 TCTTTTCAATACAAAGAAACGCAAAA 57.533 26.923 0.00 0.00 37.33 2.44
5952 6574 8.641499 ATCTTTTCAATACAAAGAAACGCAAA 57.359 26.923 0.00 0.00 42.23 3.68
5953 6575 9.393249 CTATCTTTTCAATACAAAGAAACGCAA 57.607 29.630 0.00 0.00 42.23 4.85
5954 6576 8.020819 CCTATCTTTTCAATACAAAGAAACGCA 58.979 33.333 0.00 0.00 42.23 5.24
5955 6577 7.484959 CCCTATCTTTTCAATACAAAGAAACGC 59.515 37.037 0.00 0.00 42.23 4.84
5956 6578 8.512138 ACCCTATCTTTTCAATACAAAGAAACG 58.488 33.333 0.00 0.00 42.23 3.60
5971 6593 9.990868 AGGATTGTAACATAAACCCTATCTTTT 57.009 29.630 0.00 0.00 0.00 2.27
5972 6594 9.628500 GAGGATTGTAACATAAACCCTATCTTT 57.372 33.333 0.00 0.00 0.00 2.52
5973 6595 8.218488 GGAGGATTGTAACATAAACCCTATCTT 58.782 37.037 0.00 0.00 0.00 2.40
5974 6596 7.572861 AGGAGGATTGTAACATAAACCCTATCT 59.427 37.037 0.00 0.00 0.00 1.98
5975 6597 7.746703 AGGAGGATTGTAACATAAACCCTATC 58.253 38.462 0.00 0.00 0.00 2.08
5976 6598 7.707467 AGGAGGATTGTAACATAAACCCTAT 57.293 36.000 0.00 0.00 0.00 2.57
5977 6599 7.291651 CCTAGGAGGATTGTAACATAAACCCTA 59.708 40.741 1.05 0.00 37.67 3.53
5978 6600 6.101296 CCTAGGAGGATTGTAACATAAACCCT 59.899 42.308 1.05 0.00 37.67 4.34
5979 6601 6.100714 TCCTAGGAGGATTGTAACATAAACCC 59.899 42.308 7.62 0.00 40.06 4.11
5980 6602 7.133133 TCCTAGGAGGATTGTAACATAAACC 57.867 40.000 7.62 0.00 40.06 3.27
5996 6618 4.237976 TCAGTTCTGTACCTCCTAGGAG 57.762 50.000 29.27 29.27 37.67 3.69
5997 6619 4.229812 TCATCAGTTCTGTACCTCCTAGGA 59.770 45.833 11.98 11.98 37.67 2.94
5998 6620 4.537751 TCATCAGTTCTGTACCTCCTAGG 58.462 47.826 0.82 0.82 42.49 3.02
5999 6621 5.830457 TCATCATCAGTTCTGTACCTCCTAG 59.170 44.000 0.00 0.00 0.00 3.02
6000 6622 5.766590 TCATCATCAGTTCTGTACCTCCTA 58.233 41.667 0.00 0.00 0.00 2.94
6001 6623 4.614475 TCATCATCAGTTCTGTACCTCCT 58.386 43.478 0.00 0.00 0.00 3.69
6002 6624 5.344743 TTCATCATCAGTTCTGTACCTCC 57.655 43.478 0.00 0.00 0.00 4.30
6003 6625 7.099764 TCTTTTCATCATCAGTTCTGTACCTC 58.900 38.462 0.00 0.00 0.00 3.85
6004 6626 7.009179 TCTTTTCATCATCAGTTCTGTACCT 57.991 36.000 0.00 0.00 0.00 3.08
6005 6627 7.856145 ATCTTTTCATCATCAGTTCTGTACC 57.144 36.000 0.00 0.00 0.00 3.34
6008 6630 9.902684 AAGATATCTTTTCATCATCAGTTCTGT 57.097 29.630 12.37 0.00 30.82 3.41
6381 7051 2.417515 GGTAGTGAGTAGCAGCTCAACC 60.418 54.545 0.00 11.89 45.75 3.77
6394 7064 7.280205 AGTTACAAAGTCAAAAGTGGTAGTGAG 59.720 37.037 0.00 0.00 0.00 3.51
6402 7072 7.275341 TGCAAATGAGTTACAAAGTCAAAAGTG 59.725 33.333 1.57 0.52 43.55 3.16
6471 7144 5.885912 TCAAAACCTGAAAGTTACAGAAGCT 59.114 36.000 0.00 0.00 37.54 3.74
6488 7161 7.425606 ACAAGACACAATAAGATGTCAAAACC 58.574 34.615 7.10 0.00 46.34 3.27
6568 7245 4.186926 TGAGAATAGCACATCAAGCACTC 58.813 43.478 0.00 0.00 0.00 3.51
6641 7325 2.409870 CCTCCCGCTGTTTCATGCC 61.410 63.158 0.00 0.00 0.00 4.40
6775 7459 2.123468 GTTGCAGGTGGGGTTGGT 60.123 61.111 0.00 0.00 0.00 3.67
6865 7549 3.198635 TGAAGCTCCTTGGTGATAAGAGG 59.801 47.826 0.00 0.00 0.00 3.69
6871 7555 1.004044 CCAGTGAAGCTCCTTGGTGAT 59.996 52.381 0.00 0.00 0.00 3.06
6916 7600 1.136305 GTCTTCGGGGAATCGATGTCA 59.864 52.381 0.00 0.00 39.03 3.58
6946 7630 2.123854 AGGGCGCAGTCGAGGATA 60.124 61.111 10.83 0.00 38.10 2.59
6947 7631 3.532155 GAGGGCGCAGTCGAGGAT 61.532 66.667 10.83 0.00 38.10 3.24
7065 7749 5.180868 GCAGAGATTCAGAGAAGAAAGCAAA 59.819 40.000 0.00 0.00 0.00 3.68
7292 7976 2.211250 TGTAGTAGTTCTCCGCCAGT 57.789 50.000 0.00 0.00 0.00 4.00
7463 8147 2.117941 GAACCGTGCCAACTGCTCAC 62.118 60.000 0.00 0.00 42.00 3.51
7625 8349 2.335316 ACCAAGCAAGAAACGTACCA 57.665 45.000 0.00 0.00 0.00 3.25
7626 8350 3.368495 CAAACCAAGCAAGAAACGTACC 58.632 45.455 0.00 0.00 0.00 3.34
7627 8351 3.368495 CCAAACCAAGCAAGAAACGTAC 58.632 45.455 0.00 0.00 0.00 3.67
7656 8380 4.660303 TGCCTAACTTGGACCAGATCATAT 59.340 41.667 0.00 0.00 0.00 1.78
7725 8449 0.950071 TTGCGCCGGTACAAGTTACC 60.950 55.000 4.18 0.00 0.00 2.85
7728 8452 1.503818 CTGTTGCGCCGGTACAAGTT 61.504 55.000 4.18 0.00 0.00 2.66
7730 8454 2.860293 CTGTTGCGCCGGTACAAG 59.140 61.111 4.18 0.00 0.00 3.16
7815 8539 5.014202 ACCGCTAACATTAAAATCCAAGGT 58.986 37.500 0.00 0.00 0.00 3.50
7853 8579 1.473677 GCACAGCAATGCCATCTGTTA 59.526 47.619 0.00 0.00 38.85 2.41
7890 8617 6.403527 CCTGAGCAGTAAGATCTATCTCATCG 60.404 46.154 0.00 0.00 35.76 3.84
7930 8679 9.556030 GGCTGTTGATCTAAAATTGTTTAGTAC 57.444 33.333 6.21 0.00 44.49 2.73
7942 8691 5.252547 TGTGCTAATGGCTGTTGATCTAAA 58.747 37.500 0.00 0.00 42.39 1.85
8052 8827 1.067635 CCTCGCAATTTTCCACCCAAG 60.068 52.381 0.00 0.00 0.00 3.61
8125 8911 0.468029 CCACATGCCCCCTATCAACC 60.468 60.000 0.00 0.00 0.00 3.77
8286 9073 0.616111 GAGCAGAAGGGAGTGGAGGA 60.616 60.000 0.00 0.00 0.00 3.71
8378 9317 2.018515 GCAATTGGCAAATGGGGAATG 58.981 47.619 16.49 2.30 43.97 2.67
8379 9318 2.423446 GCAATTGGCAAATGGGGAAT 57.577 45.000 16.49 0.00 43.97 3.01
8380 9319 3.953006 GCAATTGGCAAATGGGGAA 57.047 47.368 16.49 0.00 43.97 3.97
8394 9333 5.770162 AGTTAAGCAAAAGTCTAGTGGCAAT 59.230 36.000 0.00 0.00 0.00 3.56
8411 9350 8.151141 GTCCATAGGGTTTTATACAGTTAAGC 57.849 38.462 0.00 0.00 34.93 3.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.