Multiple sequence alignment - TraesCS4D01G106700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G106700 chr4D 100.000 3899 0 0 1 3899 84984755 84988653 0.000000e+00 7201.0
1 TraesCS4D01G106700 chr4D 88.608 79 7 2 3181 3258 123779678 123779601 1.150000e-15 95.3
2 TraesCS4D01G106700 chr4B 96.196 3181 105 12 663 3833 122035655 122038829 0.000000e+00 5190.0
3 TraesCS4D01G106700 chr4B 92.996 257 15 2 1 254 122032398 122032654 4.760000e-99 372.0
4 TraesCS4D01G106700 chr4B 94.521 73 3 1 588 660 122032650 122032721 1.150000e-20 111.0
5 TraesCS4D01G106700 chr4A 95.822 2609 82 12 597 3182 498675367 498677971 0.000000e+00 4189.0
6 TraesCS4D01G106700 chr4A 93.874 653 37 3 3249 3899 498677970 498678621 0.000000e+00 981.0
7 TraesCS4D01G106700 chr4A 94.690 339 16 2 254 590 714743300 714743638 3.450000e-145 525.0
8 TraesCS4D01G106700 chr4A 87.356 87 4 3 3181 3260 598725733 598725647 4.150000e-15 93.5
9 TraesCS4D01G106700 chr7D 95.058 344 15 2 252 593 451263631 451263288 1.230000e-149 540.0
10 TraesCS4D01G106700 chr7D 91.892 74 0 1 3179 3252 95064747 95064814 8.920000e-17 99.0
11 TraesCS4D01G106700 chr5D 95.308 341 14 2 254 592 217185757 217185417 1.230000e-149 540.0
12 TraesCS4D01G106700 chr7B 95.044 343 14 3 254 594 203852822 203852481 1.590000e-148 536.0
13 TraesCS4D01G106700 chr7B 94.477 344 17 2 251 592 176492548 176492205 2.670000e-146 529.0
14 TraesCS4D01G106700 chr7B 89.157 83 2 3 3181 3256 57588657 57588575 3.210000e-16 97.1
15 TraesCS4D01G106700 chr3D 94.524 347 16 3 251 594 56688071 56687725 2.060000e-147 532.0
16 TraesCS4D01G106700 chr3D 94.186 344 18 2 252 593 182983043 182983386 1.240000e-144 523.0
17 TraesCS4D01G106700 chr3A 94.752 343 16 2 252 592 435916489 435916831 2.060000e-147 532.0
18 TraesCS4D01G106700 chr2B 94.186 344 18 2 251 592 135777715 135777372 1.240000e-144 523.0
19 TraesCS4D01G106700 chr5A 90.476 84 3 1 3180 3258 321667563 321667480 5.330000e-19 106.0
20 TraesCS4D01G106700 chr1B 92.000 75 3 2 3180 3252 419934559 419934632 6.890000e-18 102.0
21 TraesCS4D01G106700 chr6D 89.024 82 3 3 3178 3253 219783721 219783640 3.210000e-16 97.1
22 TraesCS4D01G106700 chr6A 89.024 82 3 2 3178 3254 168004141 168004061 3.210000e-16 97.1
23 TraesCS4D01G106700 chr2D 90.541 74 5 1 3177 3250 334331507 334331578 3.210000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G106700 chr4D 84984755 84988653 3898 False 7201 7201 100.000 1 3899 1 chr4D.!!$F1 3898
1 TraesCS4D01G106700 chr4B 122032398 122038829 6431 False 1891 5190 94.571 1 3833 3 chr4B.!!$F1 3832
2 TraesCS4D01G106700 chr4A 498675367 498678621 3254 False 2585 4189 94.848 597 3899 2 chr4A.!!$F2 3302

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
47 48 0.113776 AGTCGGTTAGGGTCCAGACA 59.886 55.0 0.00 0.0 34.00 3.41 F
337 341 0.179018 GGGTGTCCAACAGCTTGTCT 60.179 55.0 8.93 0.0 45.25 3.41 F
389 393 0.242825 TCGACCTCGACAATGTCCAC 59.757 55.0 7.91 0.0 44.22 4.02 F
1744 4695 0.380378 TGGTTCGTGCTTCTTTGTGC 59.620 50.0 0.00 0.0 0.00 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1722 4673 0.040067 CAAAGAAGCACGAACCAGCC 60.040 55.000 0.0 0.0 0.00 4.85 R
2100 5051 0.677731 ACACAATCATCCGCTGGTGG 60.678 55.000 0.0 0.0 0.00 4.61 R
2377 5328 1.909781 CCATTGTGCCAGCAACCCT 60.910 57.895 0.0 0.0 0.00 4.34 R
3689 6663 1.002087 GTACCTCCAGTGTCAACAGGG 59.998 57.143 0.0 0.0 33.82 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.282447 ACTCTGCCGAGAAGGAGTAGA 59.718 52.381 12.54 0.00 45.00 2.59
47 48 0.113776 AGTCGGTTAGGGTCCAGACA 59.886 55.000 0.00 0.00 34.00 3.41
101 105 5.954752 TGTATGTGGCCCATTTTAGATGAAA 59.045 36.000 11.36 0.00 34.86 2.69
158 162 3.202818 TGAATATGGTTGGATGACTGGCT 59.797 43.478 0.00 0.00 0.00 4.75
165 169 2.107204 GTTGGATGACTGGCTCCCATAT 59.893 50.000 0.00 0.00 30.82 1.78
187 191 5.048153 TCACTCTTCACTGACGAATACAG 57.952 43.478 0.00 0.00 40.68 2.74
208 212 2.674357 GCGTTCGTTTTAGGGATAAGCA 59.326 45.455 0.00 0.00 0.00 3.91
209 213 3.242316 GCGTTCGTTTTAGGGATAAGCAG 60.242 47.826 0.00 0.00 0.00 4.24
212 216 3.869065 TCGTTTTAGGGATAAGCAGTGG 58.131 45.455 0.00 0.00 0.00 4.00
275 279 4.070630 GAGCATCTCCAATAGCTTGTCT 57.929 45.455 0.00 0.00 37.48 3.41
276 280 5.207110 GAGCATCTCCAATAGCTTGTCTA 57.793 43.478 0.00 0.00 37.48 2.59
277 281 5.792741 GAGCATCTCCAATAGCTTGTCTAT 58.207 41.667 0.00 0.00 39.62 1.98
278 282 6.924913 AGCATCTCCAATAGCTTGTCTATA 57.075 37.500 0.00 0.00 37.01 1.31
279 283 7.493499 AGCATCTCCAATAGCTTGTCTATAT 57.507 36.000 0.00 0.00 37.01 0.86
280 284 7.329499 AGCATCTCCAATAGCTTGTCTATATG 58.671 38.462 0.00 0.00 37.01 1.78
281 285 6.538021 GCATCTCCAATAGCTTGTCTATATGG 59.462 42.308 0.00 0.00 37.01 2.74
282 286 7.580302 GCATCTCCAATAGCTTGTCTATATGGA 60.580 40.741 0.00 11.56 39.65 3.41
283 287 8.484575 CATCTCCAATAGCTTGTCTATATGGAT 58.515 37.037 0.00 0.00 40.28 3.41
284 288 7.845037 TCTCCAATAGCTTGTCTATATGGATG 58.155 38.462 0.00 8.98 40.28 3.51
285 289 7.455953 TCTCCAATAGCTTGTCTATATGGATGT 59.544 37.037 0.00 0.00 40.28 3.06
286 290 7.615403 TCCAATAGCTTGTCTATATGGATGTC 58.385 38.462 0.00 0.00 38.52 3.06
287 291 7.455953 TCCAATAGCTTGTCTATATGGATGTCT 59.544 37.037 0.00 0.00 38.52 3.41
288 292 8.753133 CCAATAGCTTGTCTATATGGATGTCTA 58.247 37.037 0.00 0.00 37.71 2.59
293 297 9.540538 AGCTTGTCTATATGGATGTCTATACTT 57.459 33.333 0.00 0.00 0.00 2.24
294 298 9.579768 GCTTGTCTATATGGATGTCTATACTTG 57.420 37.037 0.00 0.00 0.00 3.16
302 306 7.865706 ATGGATGTCTATACTTGTTTTCCAC 57.134 36.000 0.00 0.00 0.00 4.02
303 307 5.872617 TGGATGTCTATACTTGTTTTCCACG 59.127 40.000 0.00 0.00 0.00 4.94
304 308 6.103997 GGATGTCTATACTTGTTTTCCACGA 58.896 40.000 0.00 0.00 0.00 4.35
305 309 6.035758 GGATGTCTATACTTGTTTTCCACGAC 59.964 42.308 0.00 0.00 0.00 4.34
306 310 4.919168 TGTCTATACTTGTTTTCCACGACG 59.081 41.667 0.00 0.00 0.00 5.12
307 311 4.919754 GTCTATACTTGTTTTCCACGACGT 59.080 41.667 0.00 0.00 0.00 4.34
308 312 4.919168 TCTATACTTGTTTTCCACGACGTG 59.081 41.667 21.02 21.02 0.00 4.49
309 313 2.012937 ACTTGTTTTCCACGACGTGA 57.987 45.000 28.83 12.31 35.23 4.35
310 314 1.931172 ACTTGTTTTCCACGACGTGAG 59.069 47.619 28.83 17.64 35.23 3.51
311 315 0.653636 TTGTTTTCCACGACGTGAGC 59.346 50.000 28.83 11.85 35.23 4.26
312 316 1.155424 TGTTTTCCACGACGTGAGCC 61.155 55.000 28.83 11.86 35.23 4.70
313 317 1.952133 TTTTCCACGACGTGAGCCG 60.952 57.895 28.83 12.28 44.03 5.52
314 318 2.352704 TTTTCCACGACGTGAGCCGA 62.353 55.000 28.83 14.46 40.70 5.54
315 319 2.352704 TTTCCACGACGTGAGCCGAA 62.353 55.000 28.83 19.24 40.70 4.30
316 320 2.352704 TTCCACGACGTGAGCCGAAA 62.353 55.000 28.83 9.98 40.70 3.46
317 321 1.736645 CCACGACGTGAGCCGAAAT 60.737 57.895 28.83 0.00 40.70 2.17
318 322 1.416049 CACGACGTGAGCCGAAATG 59.584 57.895 23.39 0.00 40.70 2.32
319 323 1.736645 ACGACGTGAGCCGAAATGG 60.737 57.895 0.00 0.00 40.70 3.16
320 324 2.452813 CGACGTGAGCCGAAATGGG 61.453 63.158 0.00 0.00 40.70 4.00
334 338 4.577152 TGGGTGTCCAACAGCTTG 57.423 55.556 8.93 0.00 45.25 4.01
335 339 1.612513 TGGGTGTCCAACAGCTTGT 59.387 52.632 8.93 0.00 45.25 3.16
336 340 0.465460 TGGGTGTCCAACAGCTTGTC 60.465 55.000 8.93 0.00 45.25 3.18
337 341 0.179018 GGGTGTCCAACAGCTTGTCT 60.179 55.000 8.93 0.00 45.25 3.41
338 342 1.071699 GGGTGTCCAACAGCTTGTCTA 59.928 52.381 8.93 0.00 45.25 2.59
339 343 2.290323 GGGTGTCCAACAGCTTGTCTAT 60.290 50.000 8.93 0.00 45.25 1.98
340 344 3.055385 GGGTGTCCAACAGCTTGTCTATA 60.055 47.826 8.93 0.00 45.25 1.31
341 345 4.384208 GGGTGTCCAACAGCTTGTCTATAT 60.384 45.833 8.93 0.00 45.25 0.86
342 346 4.572389 GGTGTCCAACAGCTTGTCTATATG 59.428 45.833 2.20 0.00 42.83 1.78
343 347 4.572389 GTGTCCAACAGCTTGTCTATATGG 59.428 45.833 0.00 0.00 0.00 2.74
344 348 4.225042 TGTCCAACAGCTTGTCTATATGGT 59.775 41.667 0.00 0.00 0.00 3.55
345 349 4.811557 GTCCAACAGCTTGTCTATATGGTC 59.188 45.833 0.00 0.00 0.00 4.02
346 350 3.804325 CCAACAGCTTGTCTATATGGTCG 59.196 47.826 0.00 0.00 0.00 4.79
347 351 4.433615 CAACAGCTTGTCTATATGGTCGT 58.566 43.478 0.00 0.00 0.00 4.34
348 352 4.308899 ACAGCTTGTCTATATGGTCGTC 57.691 45.455 0.00 0.00 0.00 4.20
349 353 3.068307 ACAGCTTGTCTATATGGTCGTCC 59.932 47.826 0.00 0.00 0.00 4.79
363 367 4.699637 TGGTCGTCCAAATATACACATCC 58.300 43.478 0.00 0.00 41.25 3.51
364 368 4.407621 TGGTCGTCCAAATATACACATCCT 59.592 41.667 0.00 0.00 41.25 3.24
365 369 4.989168 GGTCGTCCAAATATACACATCCTC 59.011 45.833 0.00 0.00 0.00 3.71
366 370 5.221461 GGTCGTCCAAATATACACATCCTCT 60.221 44.000 0.00 0.00 0.00 3.69
367 371 6.015688 GGTCGTCCAAATATACACATCCTCTA 60.016 42.308 0.00 0.00 0.00 2.43
368 372 7.431249 GTCGTCCAAATATACACATCCTCTAA 58.569 38.462 0.00 0.00 0.00 2.10
369 373 7.924412 GTCGTCCAAATATACACATCCTCTAAA 59.076 37.037 0.00 0.00 0.00 1.85
370 374 8.647796 TCGTCCAAATATACACATCCTCTAAAT 58.352 33.333 0.00 0.00 0.00 1.40
371 375 8.926710 CGTCCAAATATACACATCCTCTAAATC 58.073 37.037 0.00 0.00 0.00 2.17
372 376 8.926710 GTCCAAATATACACATCCTCTAAATCG 58.073 37.037 0.00 0.00 0.00 3.34
373 377 8.866093 TCCAAATATACACATCCTCTAAATCGA 58.134 33.333 0.00 0.00 0.00 3.59
374 378 8.926710 CCAAATATACACATCCTCTAAATCGAC 58.073 37.037 0.00 0.00 0.00 4.20
375 379 8.926710 CAAATATACACATCCTCTAAATCGACC 58.073 37.037 0.00 0.00 0.00 4.79
376 380 8.423906 AATATACACATCCTCTAAATCGACCT 57.576 34.615 0.00 0.00 0.00 3.85
377 381 4.657436 ACACATCCTCTAAATCGACCTC 57.343 45.455 0.00 0.00 0.00 3.85
378 382 3.066900 ACACATCCTCTAAATCGACCTCG 59.933 47.826 0.00 0.00 41.45 4.63
388 392 2.648593 TCGACCTCGACAATGTCCA 58.351 52.632 7.91 0.00 44.22 4.02
389 393 0.242825 TCGACCTCGACAATGTCCAC 59.757 55.000 7.91 0.00 44.22 4.02
390 394 1.071019 CGACCTCGACAATGTCCACG 61.071 60.000 7.91 0.00 43.02 4.94
391 395 1.352156 GACCTCGACAATGTCCACGC 61.352 60.000 7.91 0.00 0.00 5.34
392 396 2.100631 CCTCGACAATGTCCACGCC 61.101 63.158 7.91 0.00 0.00 5.68
393 397 1.079819 CTCGACAATGTCCACGCCT 60.080 57.895 7.91 0.00 0.00 5.52
394 398 1.354337 CTCGACAATGTCCACGCCTG 61.354 60.000 7.91 0.00 0.00 4.85
395 399 2.390599 CGACAATGTCCACGCCTGG 61.391 63.158 7.91 0.00 39.23 4.45
396 400 1.003839 GACAATGTCCACGCCTGGA 60.004 57.895 1.10 0.00 45.11 3.86
402 406 3.156714 TCCACGCCTGGACAATGT 58.843 55.556 0.00 0.00 42.15 2.71
403 407 1.302431 TCCACGCCTGGACAATGTG 60.302 57.895 0.00 0.00 42.15 3.21
404 408 1.302431 CCACGCCTGGACAATGTGA 60.302 57.895 0.00 0.00 40.55 3.58
405 409 0.888736 CCACGCCTGGACAATGTGAA 60.889 55.000 0.00 0.00 40.55 3.18
406 410 0.518636 CACGCCTGGACAATGTGAAG 59.481 55.000 0.00 0.00 32.39 3.02
407 411 0.606401 ACGCCTGGACAATGTGAAGG 60.606 55.000 0.00 6.59 0.00 3.46
408 412 1.885871 GCCTGGACAATGTGAAGGC 59.114 57.895 17.00 17.00 46.04 4.35
409 413 3.344703 CCTGGACAATGTGAAGGCA 57.655 52.632 0.00 0.00 0.00 4.75
410 414 1.843368 CCTGGACAATGTGAAGGCAT 58.157 50.000 0.00 0.00 0.00 4.40
411 415 1.747355 CCTGGACAATGTGAAGGCATC 59.253 52.381 0.00 0.00 0.00 3.91
412 416 1.399440 CTGGACAATGTGAAGGCATCG 59.601 52.381 0.00 0.00 0.00 3.84
413 417 1.271325 TGGACAATGTGAAGGCATCGT 60.271 47.619 0.00 0.00 0.00 3.73
414 418 1.398390 GGACAATGTGAAGGCATCGTC 59.602 52.381 0.00 0.00 33.38 4.20
415 419 2.350522 GACAATGTGAAGGCATCGTCT 58.649 47.619 0.00 0.00 31.93 4.18
416 420 3.521560 GACAATGTGAAGGCATCGTCTA 58.478 45.455 0.00 0.00 31.93 2.59
417 421 3.932710 GACAATGTGAAGGCATCGTCTAA 59.067 43.478 0.00 0.00 31.93 2.10
418 422 4.323417 ACAATGTGAAGGCATCGTCTAAA 58.677 39.130 0.00 0.00 0.00 1.85
419 423 4.154195 ACAATGTGAAGGCATCGTCTAAAC 59.846 41.667 0.00 0.00 0.00 2.01
420 424 3.678056 TGTGAAGGCATCGTCTAAACT 57.322 42.857 0.00 0.00 0.00 2.66
421 425 3.585862 TGTGAAGGCATCGTCTAAACTC 58.414 45.455 0.00 0.00 0.00 3.01
422 426 3.006430 TGTGAAGGCATCGTCTAAACTCA 59.994 43.478 0.00 0.00 0.00 3.41
423 427 3.614616 GTGAAGGCATCGTCTAAACTCAG 59.385 47.826 0.00 0.00 0.00 3.35
424 428 3.258372 TGAAGGCATCGTCTAAACTCAGT 59.742 43.478 0.00 0.00 0.00 3.41
425 429 3.963428 AGGCATCGTCTAAACTCAGTT 57.037 42.857 0.00 0.00 0.00 3.16
426 430 3.589988 AGGCATCGTCTAAACTCAGTTG 58.410 45.455 0.00 0.00 0.00 3.16
427 431 3.006967 AGGCATCGTCTAAACTCAGTTGT 59.993 43.478 0.00 0.00 0.00 3.32
428 432 4.219944 AGGCATCGTCTAAACTCAGTTGTA 59.780 41.667 0.00 0.00 0.00 2.41
429 433 4.563184 GGCATCGTCTAAACTCAGTTGTAG 59.437 45.833 0.00 0.00 0.00 2.74
430 434 5.162075 GCATCGTCTAAACTCAGTTGTAGT 58.838 41.667 0.00 0.00 0.00 2.73
431 435 5.286558 GCATCGTCTAAACTCAGTTGTAGTC 59.713 44.000 0.00 0.00 0.00 2.59
432 436 6.379386 CATCGTCTAAACTCAGTTGTAGTCA 58.621 40.000 0.00 0.00 0.00 3.41
433 437 6.570672 TCGTCTAAACTCAGTTGTAGTCAT 57.429 37.500 0.00 0.00 0.00 3.06
434 438 6.379386 TCGTCTAAACTCAGTTGTAGTCATG 58.621 40.000 0.00 0.00 0.00 3.07
435 439 6.206048 TCGTCTAAACTCAGTTGTAGTCATGA 59.794 38.462 0.00 0.00 0.00 3.07
436 440 7.030165 CGTCTAAACTCAGTTGTAGTCATGAT 58.970 38.462 0.00 0.00 0.00 2.45
437 441 7.542477 CGTCTAAACTCAGTTGTAGTCATGATT 59.458 37.037 0.00 0.00 0.00 2.57
438 442 9.209175 GTCTAAACTCAGTTGTAGTCATGATTT 57.791 33.333 0.00 0.00 0.00 2.17
439 443 9.424319 TCTAAACTCAGTTGTAGTCATGATTTC 57.576 33.333 0.00 0.00 0.00 2.17
440 444 9.429359 CTAAACTCAGTTGTAGTCATGATTTCT 57.571 33.333 0.00 0.00 0.00 2.52
441 445 8.682936 AAACTCAGTTGTAGTCATGATTTCTT 57.317 30.769 0.00 0.00 0.00 2.52
442 446 7.897575 ACTCAGTTGTAGTCATGATTTCTTC 57.102 36.000 0.00 0.00 0.00 2.87
443 447 6.876257 ACTCAGTTGTAGTCATGATTTCTTCC 59.124 38.462 0.00 0.00 0.00 3.46
444 448 7.009179 TCAGTTGTAGTCATGATTTCTTCCT 57.991 36.000 0.00 0.00 0.00 3.36
445 449 7.099764 TCAGTTGTAGTCATGATTTCTTCCTC 58.900 38.462 0.00 0.00 0.00 3.71
446 450 7.038729 TCAGTTGTAGTCATGATTTCTTCCTCT 60.039 37.037 0.00 0.00 0.00 3.69
447 451 7.277539 CAGTTGTAGTCATGATTTCTTCCTCTC 59.722 40.741 0.00 0.00 0.00 3.20
448 452 6.227298 TGTAGTCATGATTTCTTCCTCTCC 57.773 41.667 0.00 0.00 0.00 3.71
449 453 4.769345 AGTCATGATTTCTTCCTCTCCC 57.231 45.455 0.00 0.00 0.00 4.30
450 454 3.457749 AGTCATGATTTCTTCCTCTCCCC 59.542 47.826 0.00 0.00 0.00 4.81
451 455 3.200825 GTCATGATTTCTTCCTCTCCCCA 59.799 47.826 0.00 0.00 0.00 4.96
452 456 3.457380 TCATGATTTCTTCCTCTCCCCAG 59.543 47.826 0.00 0.00 0.00 4.45
453 457 1.561542 TGATTTCTTCCTCTCCCCAGC 59.438 52.381 0.00 0.00 0.00 4.85
454 458 0.543749 ATTTCTTCCTCTCCCCAGCG 59.456 55.000 0.00 0.00 0.00 5.18
455 459 0.544357 TTTCTTCCTCTCCCCAGCGA 60.544 55.000 0.00 0.00 0.00 4.93
456 460 1.258445 TTCTTCCTCTCCCCAGCGAC 61.258 60.000 0.00 0.00 0.00 5.19
457 461 3.068691 TTCCTCTCCCCAGCGACG 61.069 66.667 0.00 0.00 0.00 5.12
470 474 4.082523 CGACGGCCCACCTGTCAT 62.083 66.667 0.00 0.00 38.56 3.06
471 475 2.436646 GACGGCCCACCTGTCATG 60.437 66.667 0.00 0.00 38.53 3.07
472 476 3.976701 GACGGCCCACCTGTCATGG 62.977 68.421 0.00 0.00 38.53 3.66
473 477 4.033776 CGGCCCACCTGTCATGGT 62.034 66.667 0.00 0.00 41.77 3.55
479 483 3.580084 ACCTGTCATGGTGCCTGT 58.420 55.556 0.00 0.00 39.17 4.00
480 484 2.772102 ACCTGTCATGGTGCCTGTA 58.228 52.632 0.00 0.00 39.17 2.74
481 485 1.289160 ACCTGTCATGGTGCCTGTAT 58.711 50.000 0.00 0.00 39.17 2.29
482 486 2.477245 ACCTGTCATGGTGCCTGTATA 58.523 47.619 0.00 0.00 39.17 1.47
483 487 3.048600 ACCTGTCATGGTGCCTGTATAT 58.951 45.455 0.00 0.00 39.17 0.86
484 488 4.231273 ACCTGTCATGGTGCCTGTATATA 58.769 43.478 0.00 0.00 39.17 0.86
485 489 4.284490 ACCTGTCATGGTGCCTGTATATAG 59.716 45.833 0.00 0.00 39.17 1.31
486 490 4.528206 CCTGTCATGGTGCCTGTATATAGA 59.472 45.833 0.00 0.00 0.00 1.98
487 491 5.468540 TGTCATGGTGCCTGTATATAGAC 57.531 43.478 0.00 0.00 0.00 2.59
488 492 4.022329 TGTCATGGTGCCTGTATATAGACG 60.022 45.833 0.00 0.00 0.00 4.18
489 493 4.022242 GTCATGGTGCCTGTATATAGACGT 60.022 45.833 0.00 0.00 0.00 4.34
490 494 4.587262 TCATGGTGCCTGTATATAGACGTT 59.413 41.667 0.00 0.00 0.00 3.99
491 495 4.579454 TGGTGCCTGTATATAGACGTTC 57.421 45.455 0.00 0.00 0.00 3.95
492 496 4.212716 TGGTGCCTGTATATAGACGTTCT 58.787 43.478 0.00 0.00 0.00 3.01
493 497 4.037565 TGGTGCCTGTATATAGACGTTCTG 59.962 45.833 0.00 0.00 0.00 3.02
494 498 4.277672 GGTGCCTGTATATAGACGTTCTGA 59.722 45.833 0.00 0.00 0.00 3.27
495 499 5.047943 GGTGCCTGTATATAGACGTTCTGAT 60.048 44.000 0.00 0.00 0.00 2.90
496 500 5.859114 GTGCCTGTATATAGACGTTCTGATG 59.141 44.000 0.00 0.00 0.00 3.07
497 501 4.859798 GCCTGTATATAGACGTTCTGATGC 59.140 45.833 0.00 0.00 0.00 3.91
498 502 5.564848 GCCTGTATATAGACGTTCTGATGCA 60.565 44.000 0.00 0.00 0.00 3.96
499 503 6.447162 CCTGTATATAGACGTTCTGATGCAA 58.553 40.000 0.00 0.00 0.00 4.08
500 504 6.923508 CCTGTATATAGACGTTCTGATGCAAA 59.076 38.462 0.00 0.00 0.00 3.68
501 505 7.438160 CCTGTATATAGACGTTCTGATGCAAAA 59.562 37.037 0.00 0.00 0.00 2.44
502 506 8.126871 TGTATATAGACGTTCTGATGCAAAAC 57.873 34.615 0.00 0.00 0.00 2.43
503 507 7.979537 TGTATATAGACGTTCTGATGCAAAACT 59.020 33.333 0.00 0.00 0.00 2.66
504 508 3.885484 AGACGTTCTGATGCAAAACTG 57.115 42.857 0.00 0.00 0.00 3.16
505 509 2.549754 AGACGTTCTGATGCAAAACTGG 59.450 45.455 0.00 0.00 0.00 4.00
506 510 2.548057 GACGTTCTGATGCAAAACTGGA 59.452 45.455 0.00 0.00 0.00 3.86
507 511 2.290641 ACGTTCTGATGCAAAACTGGAC 59.709 45.455 0.00 0.00 0.00 4.02
508 512 2.662791 CGTTCTGATGCAAAACTGGACG 60.663 50.000 12.26 12.26 32.64 4.79
509 513 2.254546 TCTGATGCAAAACTGGACGT 57.745 45.000 0.00 0.00 0.00 4.34
510 514 1.872952 TCTGATGCAAAACTGGACGTG 59.127 47.619 0.00 0.00 0.00 4.49
511 515 1.603802 CTGATGCAAAACTGGACGTGT 59.396 47.619 0.00 0.00 0.00 4.49
512 516 2.805671 CTGATGCAAAACTGGACGTGTA 59.194 45.455 0.00 0.00 0.00 2.90
513 517 3.407698 TGATGCAAAACTGGACGTGTAT 58.592 40.909 0.00 0.00 0.00 2.29
514 518 4.570930 TGATGCAAAACTGGACGTGTATA 58.429 39.130 0.00 0.00 0.00 1.47
515 519 5.182487 TGATGCAAAACTGGACGTGTATAT 58.818 37.500 0.00 0.00 0.00 0.86
516 520 4.937696 TGCAAAACTGGACGTGTATATG 57.062 40.909 0.00 0.00 0.00 1.78
517 521 4.570930 TGCAAAACTGGACGTGTATATGA 58.429 39.130 0.00 0.00 0.00 2.15
518 522 4.629634 TGCAAAACTGGACGTGTATATGAG 59.370 41.667 0.00 0.00 0.00 2.90
519 523 4.034048 GCAAAACTGGACGTGTATATGAGG 59.966 45.833 0.00 0.00 0.00 3.86
520 524 4.402056 AAACTGGACGTGTATATGAGGG 57.598 45.455 0.00 0.00 0.00 4.30
521 525 3.308035 ACTGGACGTGTATATGAGGGA 57.692 47.619 0.00 0.00 0.00 4.20
522 526 3.638860 ACTGGACGTGTATATGAGGGAA 58.361 45.455 0.00 0.00 0.00 3.97
523 527 4.223953 ACTGGACGTGTATATGAGGGAAT 58.776 43.478 0.00 0.00 0.00 3.01
524 528 4.281182 ACTGGACGTGTATATGAGGGAATC 59.719 45.833 0.00 0.00 0.00 2.52
525 529 4.480115 TGGACGTGTATATGAGGGAATCT 58.520 43.478 0.00 0.00 0.00 2.40
526 530 4.899457 TGGACGTGTATATGAGGGAATCTT 59.101 41.667 0.00 0.00 0.00 2.40
527 531 5.365605 TGGACGTGTATATGAGGGAATCTTT 59.634 40.000 0.00 0.00 0.00 2.52
528 532 5.927115 GGACGTGTATATGAGGGAATCTTTC 59.073 44.000 0.00 0.00 0.00 2.62
529 533 6.239345 GGACGTGTATATGAGGGAATCTTTCT 60.239 42.308 0.00 0.00 0.00 2.52
530 534 7.039923 GGACGTGTATATGAGGGAATCTTTCTA 60.040 40.741 0.00 0.00 0.00 2.10
531 535 7.887381 ACGTGTATATGAGGGAATCTTTCTAG 58.113 38.462 0.00 0.00 0.00 2.43
532 536 7.724506 ACGTGTATATGAGGGAATCTTTCTAGA 59.275 37.037 0.00 0.00 34.21 2.43
533 537 8.024285 CGTGTATATGAGGGAATCTTTCTAGAC 58.976 40.741 0.00 0.00 31.99 2.59
534 538 8.308207 GTGTATATGAGGGAATCTTTCTAGACC 58.692 40.741 0.00 0.00 31.99 3.85
535 539 8.010697 TGTATATGAGGGAATCTTTCTAGACCA 58.989 37.037 0.00 0.00 31.99 4.02
536 540 9.041354 GTATATGAGGGAATCTTTCTAGACCAT 57.959 37.037 0.00 0.00 31.99 3.55
537 541 6.838401 ATGAGGGAATCTTTCTAGACCATT 57.162 37.500 0.00 0.00 31.99 3.16
538 542 5.994250 TGAGGGAATCTTTCTAGACCATTG 58.006 41.667 0.00 0.00 31.99 2.82
539 543 5.488919 TGAGGGAATCTTTCTAGACCATTGT 59.511 40.000 0.00 0.00 31.99 2.71
540 544 5.995446 AGGGAATCTTTCTAGACCATTGTC 58.005 41.667 0.00 0.00 42.09 3.18
580 584 9.006839 AGACATCAAATATACACATGCTATTGG 57.993 33.333 0.00 0.00 0.00 3.16
581 585 8.922931 ACATCAAATATACACATGCTATTGGA 57.077 30.769 0.00 0.00 0.00 3.53
582 586 9.353431 ACATCAAATATACACATGCTATTGGAA 57.647 29.630 0.00 0.00 0.00 3.53
586 590 8.918658 CAAATATACACATGCTATTGGAAATGC 58.081 33.333 0.00 0.00 0.00 3.56
587 591 8.413309 AATATACACATGCTATTGGAAATGCT 57.587 30.769 0.00 0.00 0.00 3.79
588 592 4.644103 ACACATGCTATTGGAAATGCTC 57.356 40.909 0.00 0.00 0.00 4.26
589 593 4.275810 ACACATGCTATTGGAAATGCTCT 58.724 39.130 0.00 0.00 0.00 4.09
590 594 4.708421 ACACATGCTATTGGAAATGCTCTT 59.292 37.500 0.00 0.00 0.00 2.85
593 597 5.008019 ACATGCTATTGGAAATGCTCTTACG 59.992 40.000 0.00 0.00 0.00 3.18
603 607 1.445582 GCTCTTACGACCACCCACG 60.446 63.158 0.00 0.00 0.00 4.94
606 610 1.747355 CTCTTACGACCACCCACGTAT 59.253 52.381 0.00 0.00 42.86 3.06
668 3605 4.574828 ACGAATAAAGGCTGCAAATACGAT 59.425 37.500 0.50 0.00 0.00 3.73
669 3606 5.756347 ACGAATAAAGGCTGCAAATACGATA 59.244 36.000 0.50 0.00 0.00 2.92
833 3784 1.341209 CAACAGGGAAAAGCCAAGACC 59.659 52.381 0.00 0.00 38.95 3.85
840 3791 2.095212 GGAAAAGCCAAGACCGATTGAC 60.095 50.000 0.00 0.00 36.34 3.18
1110 4061 1.375523 CCCGCTAAACTTCACCGCT 60.376 57.895 0.00 0.00 0.00 5.52
1716 4667 1.468914 GCCTTTGTACTGCTAGTTGCC 59.531 52.381 0.00 0.00 42.00 4.52
1740 4691 1.507141 CGGCTGGTTCGTGCTTCTTT 61.507 55.000 0.00 0.00 0.00 2.52
1744 4695 0.380378 TGGTTCGTGCTTCTTTGTGC 59.620 50.000 0.00 0.00 0.00 4.57
1887 4838 3.645268 GATGGCCACGGGGAGCTTT 62.645 63.158 8.67 0.00 35.59 3.51
1992 4943 1.230635 GCTTCAAGAACTGCTCGGCA 61.231 55.000 0.00 0.00 36.92 5.69
2025 4976 2.032634 GTTCGCGCATGAGGTGGAA 61.033 57.895 8.75 0.00 0.00 3.53
2100 5051 4.828925 GCCACGCAGAGAGAGGGC 62.829 72.222 0.00 0.00 0.00 5.19
2226 5177 4.839706 ATTGGGATGGCACGGGGC 62.840 66.667 3.20 3.20 43.74 5.80
2377 5328 1.217001 GATGACACACGTGAGCACAA 58.783 50.000 25.01 2.63 0.00 3.33
2397 5348 1.907807 GGTTGCTGGCACAATGGGA 60.908 57.895 5.94 0.00 38.70 4.37
2553 5504 1.243342 TTGCTGATTGGGCTTGGTCG 61.243 55.000 0.00 0.00 0.00 4.79
2646 5597 1.321743 GAGAAGTATGTGCTTGTCGCG 59.678 52.381 0.00 0.00 43.27 5.87
3189 6150 3.845860 TGTCCTGTGATATACTCCCTCC 58.154 50.000 0.00 0.00 0.00 4.30
3218 6190 8.294577 CCCAAAATAAGTGTCTTTGTACTAACC 58.705 37.037 0.00 0.00 0.00 2.85
3219 6191 9.063615 CCAAAATAAGTGTCTTTGTACTAACCT 57.936 33.333 0.00 0.00 0.00 3.50
3322 6295 8.685311 AGGTACCTATAGTTCCATATTAGGACA 58.315 37.037 14.41 0.00 38.37 4.02
3420 6394 7.704578 AGTCTGTACTTCTCTGTAGCATAAA 57.295 36.000 0.00 0.00 29.00 1.40
3421 6395 7.540299 AGTCTGTACTTCTCTGTAGCATAAAC 58.460 38.462 0.00 0.00 29.00 2.01
3689 6663 1.574263 AGGAACCTAGTTCTCCAGGC 58.426 55.000 7.36 0.00 41.70 4.85
3717 6691 5.854010 TGACACTGGAGGTACTGATATTC 57.146 43.478 0.00 0.00 41.55 1.75
3720 6694 3.967326 CACTGGAGGTACTGATATTCCCA 59.033 47.826 0.00 0.00 41.55 4.37
3725 6699 4.262678 GGAGGTACTGATATTCCCAAGCTC 60.263 50.000 0.00 0.00 41.55 4.09
3863 6839 8.531622 TGTGAAGCACATTATTTTTATTGGTG 57.468 30.769 0.00 0.00 39.62 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 2.393646 GACTCCCATGCTCTACTCCTT 58.606 52.381 0.00 0.00 0.00 3.36
20 21 1.338136 CCCTAACCGACTCCCATGCT 61.338 60.000 0.00 0.00 0.00 3.79
79 83 7.673641 ATTTTCATCTAAAATGGGCCACATA 57.326 32.000 9.28 0.93 44.36 2.29
132 136 4.271049 CAGTCATCCAACCATATTCACGTC 59.729 45.833 0.00 0.00 0.00 4.34
135 139 3.316308 GCCAGTCATCCAACCATATTCAC 59.684 47.826 0.00 0.00 0.00 3.18
158 162 3.381590 CGTCAGTGAAGAGTGATATGGGA 59.618 47.826 0.00 0.00 33.97 4.37
165 169 4.616143 GCTGTATTCGTCAGTGAAGAGTGA 60.616 45.833 13.09 0.00 35.60 3.41
187 191 2.674357 TGCTTATCCCTAAAACGAACGC 59.326 45.455 0.00 0.00 0.00 4.84
253 257 3.710677 AGACAAGCTATTGGAGATGCTCT 59.289 43.478 0.00 0.00 40.97 4.09
254 258 4.070630 AGACAAGCTATTGGAGATGCTC 57.929 45.455 0.00 0.00 40.97 4.26
255 259 5.822132 ATAGACAAGCTATTGGAGATGCT 57.178 39.130 0.00 0.00 40.97 3.79
256 260 6.538021 CCATATAGACAAGCTATTGGAGATGC 59.462 42.308 0.00 0.00 40.30 3.91
257 261 7.845037 TCCATATAGACAAGCTATTGGAGATG 58.155 38.462 0.00 0.00 39.33 2.90
258 262 8.484575 CATCCATATAGACAAGCTATTGGAGAT 58.515 37.037 15.14 0.00 42.82 2.75
259 263 7.455953 ACATCCATATAGACAAGCTATTGGAGA 59.544 37.037 15.14 0.00 42.82 3.71
260 264 7.619050 ACATCCATATAGACAAGCTATTGGAG 58.381 38.462 15.14 11.78 42.82 3.86
261 265 7.455953 AGACATCCATATAGACAAGCTATTGGA 59.544 37.037 13.58 13.58 43.21 3.53
262 266 7.619050 AGACATCCATATAGACAAGCTATTGG 58.381 38.462 0.00 0.00 40.30 3.16
267 271 9.540538 AAGTATAGACATCCATATAGACAAGCT 57.459 33.333 0.00 0.00 0.00 3.74
268 272 9.579768 CAAGTATAGACATCCATATAGACAAGC 57.420 37.037 0.00 0.00 0.00 4.01
276 280 9.561069 GTGGAAAACAAGTATAGACATCCATAT 57.439 33.333 0.00 0.00 36.86 1.78
277 281 7.709182 CGTGGAAAACAAGTATAGACATCCATA 59.291 37.037 0.00 0.00 36.86 2.74
278 282 6.538742 CGTGGAAAACAAGTATAGACATCCAT 59.461 38.462 0.00 0.00 36.86 3.41
279 283 5.872617 CGTGGAAAACAAGTATAGACATCCA 59.127 40.000 0.00 0.00 32.33 3.41
280 284 6.035758 GTCGTGGAAAACAAGTATAGACATCC 59.964 42.308 0.00 0.00 0.00 3.51
281 285 6.237490 CGTCGTGGAAAACAAGTATAGACATC 60.237 42.308 0.00 0.00 0.00 3.06
282 286 5.575606 CGTCGTGGAAAACAAGTATAGACAT 59.424 40.000 0.00 0.00 0.00 3.06
283 287 4.919168 CGTCGTGGAAAACAAGTATAGACA 59.081 41.667 0.00 0.00 0.00 3.41
284 288 4.919754 ACGTCGTGGAAAACAAGTATAGAC 59.080 41.667 0.00 0.00 0.00 2.59
285 289 4.919168 CACGTCGTGGAAAACAAGTATAGA 59.081 41.667 17.75 0.00 0.00 1.98
286 290 4.919168 TCACGTCGTGGAAAACAAGTATAG 59.081 41.667 24.33 0.00 33.87 1.31
287 291 4.869215 TCACGTCGTGGAAAACAAGTATA 58.131 39.130 24.33 0.00 33.87 1.47
288 292 3.719924 TCACGTCGTGGAAAACAAGTAT 58.280 40.909 24.33 0.00 33.87 2.12
289 293 3.117794 CTCACGTCGTGGAAAACAAGTA 58.882 45.455 24.33 0.90 33.87 2.24
290 294 1.931172 CTCACGTCGTGGAAAACAAGT 59.069 47.619 24.33 0.00 33.87 3.16
291 295 1.332904 GCTCACGTCGTGGAAAACAAG 60.333 52.381 24.33 13.54 33.87 3.16
292 296 0.653636 GCTCACGTCGTGGAAAACAA 59.346 50.000 24.33 3.10 33.87 2.83
293 297 1.155424 GGCTCACGTCGTGGAAAACA 61.155 55.000 24.33 3.84 33.87 2.83
294 298 1.568025 GGCTCACGTCGTGGAAAAC 59.432 57.895 24.33 9.86 33.87 2.43
295 299 1.952133 CGGCTCACGTCGTGGAAAA 60.952 57.895 24.33 4.95 37.93 2.29
296 300 2.352704 TTCGGCTCACGTCGTGGAAA 62.353 55.000 24.33 5.33 44.69 3.13
297 301 2.352704 TTTCGGCTCACGTCGTGGAA 62.353 55.000 24.33 16.31 44.69 3.53
298 302 2.149803 ATTTCGGCTCACGTCGTGGA 62.150 55.000 24.33 11.33 44.69 4.02
299 303 1.736645 ATTTCGGCTCACGTCGTGG 60.737 57.895 24.33 15.88 44.69 4.94
300 304 1.416049 CATTTCGGCTCACGTCGTG 59.584 57.895 19.38 19.38 44.69 4.35
301 305 1.736645 CCATTTCGGCTCACGTCGT 60.737 57.895 0.00 0.00 44.69 4.34
302 306 2.452813 CCCATTTCGGCTCACGTCG 61.453 63.158 0.00 0.00 44.69 5.12
303 307 1.375523 ACCCATTTCGGCTCACGTC 60.376 57.895 0.00 0.00 44.69 4.34
304 308 1.671054 CACCCATTTCGGCTCACGT 60.671 57.895 0.00 0.00 44.69 4.49
305 309 1.635663 GACACCCATTTCGGCTCACG 61.636 60.000 0.00 0.00 46.11 4.35
306 310 1.305930 GGACACCCATTTCGGCTCAC 61.306 60.000 0.00 0.00 0.00 3.51
307 311 1.002624 GGACACCCATTTCGGCTCA 60.003 57.895 0.00 0.00 0.00 4.26
308 312 0.608035 TTGGACACCCATTTCGGCTC 60.608 55.000 0.00 0.00 43.12 4.70
309 313 0.893727 GTTGGACACCCATTTCGGCT 60.894 55.000 0.00 0.00 43.12 5.52
310 314 1.175983 TGTTGGACACCCATTTCGGC 61.176 55.000 0.00 0.00 43.12 5.54
311 315 0.881118 CTGTTGGACACCCATTTCGG 59.119 55.000 0.00 0.00 43.12 4.30
312 316 0.240945 GCTGTTGGACACCCATTTCG 59.759 55.000 0.00 0.00 43.12 3.46
313 317 1.620822 AGCTGTTGGACACCCATTTC 58.379 50.000 0.00 0.00 43.12 2.17
314 318 1.688197 CAAGCTGTTGGACACCCATTT 59.312 47.619 0.00 0.00 43.12 2.32
315 319 1.331214 CAAGCTGTTGGACACCCATT 58.669 50.000 0.00 0.00 43.12 3.16
316 320 0.185901 ACAAGCTGTTGGACACCCAT 59.814 50.000 0.00 0.00 43.12 4.00
317 321 0.465460 GACAAGCTGTTGGACACCCA 60.465 55.000 0.00 0.00 41.64 4.51
318 322 0.179018 AGACAAGCTGTTGGACACCC 60.179 55.000 0.00 0.00 38.07 4.61
319 323 2.543777 TAGACAAGCTGTTGGACACC 57.456 50.000 0.00 0.00 38.07 4.16
320 324 4.572389 CCATATAGACAAGCTGTTGGACAC 59.428 45.833 0.00 0.00 38.07 3.67
321 325 4.225042 ACCATATAGACAAGCTGTTGGACA 59.775 41.667 9.51 0.00 38.07 4.02
322 326 4.770795 ACCATATAGACAAGCTGTTGGAC 58.229 43.478 9.51 0.00 38.07 4.02
323 327 4.441495 CGACCATATAGACAAGCTGTTGGA 60.441 45.833 9.51 0.00 38.07 3.53
324 328 3.804325 CGACCATATAGACAAGCTGTTGG 59.196 47.826 0.00 0.00 38.07 3.77
325 329 4.433615 ACGACCATATAGACAAGCTGTTG 58.566 43.478 0.00 0.00 39.82 3.33
326 330 4.441634 GGACGACCATATAGACAAGCTGTT 60.442 45.833 0.00 0.00 35.97 3.16
327 331 3.068307 GGACGACCATATAGACAAGCTGT 59.932 47.826 0.00 0.00 35.97 4.40
328 332 3.068165 TGGACGACCATATAGACAAGCTG 59.932 47.826 1.37 0.00 41.77 4.24
329 333 3.296854 TGGACGACCATATAGACAAGCT 58.703 45.455 1.37 0.00 41.77 3.74
330 334 3.728076 TGGACGACCATATAGACAAGC 57.272 47.619 1.37 0.00 41.77 4.01
331 335 9.355215 GTATATTTGGACGACCATATAGACAAG 57.645 37.037 24.99 0.00 44.16 3.16
334 338 8.301720 TGTGTATATTTGGACGACCATATAGAC 58.698 37.037 23.98 23.98 44.55 2.59
335 339 8.411991 TGTGTATATTTGGACGACCATATAGA 57.588 34.615 18.22 13.12 46.34 1.98
336 340 9.302345 GATGTGTATATTTGGACGACCATATAG 57.698 37.037 18.22 0.00 46.34 1.31
337 341 8.255206 GGATGTGTATATTTGGACGACCATATA 58.745 37.037 16.40 16.40 46.34 0.86
338 342 7.038302 AGGATGTGTATATTTGGACGACCATAT 60.038 37.037 7.61 11.10 46.34 1.78
339 343 6.269077 AGGATGTGTATATTTGGACGACCATA 59.731 38.462 7.61 3.12 46.34 2.74
340 344 5.071788 AGGATGTGTATATTTGGACGACCAT 59.928 40.000 7.61 0.00 46.34 3.55
341 345 4.407621 AGGATGTGTATATTTGGACGACCA 59.592 41.667 1.37 1.37 45.34 4.02
342 346 4.957296 AGGATGTGTATATTTGGACGACC 58.043 43.478 0.00 0.00 0.00 4.79
343 347 5.844004 AGAGGATGTGTATATTTGGACGAC 58.156 41.667 0.00 0.00 0.00 4.34
344 348 7.591421 TTAGAGGATGTGTATATTTGGACGA 57.409 36.000 0.00 0.00 0.00 4.20
345 349 8.833231 ATTTAGAGGATGTGTATATTTGGACG 57.167 34.615 0.00 0.00 0.00 4.79
346 350 8.926710 CGATTTAGAGGATGTGTATATTTGGAC 58.073 37.037 0.00 0.00 0.00 4.02
347 351 8.866093 TCGATTTAGAGGATGTGTATATTTGGA 58.134 33.333 0.00 0.00 0.00 3.53
348 352 8.926710 GTCGATTTAGAGGATGTGTATATTTGG 58.073 37.037 0.00 0.00 0.00 3.28
349 353 8.926710 GGTCGATTTAGAGGATGTGTATATTTG 58.073 37.037 0.00 0.00 0.00 2.32
350 354 8.871125 AGGTCGATTTAGAGGATGTGTATATTT 58.129 33.333 0.00 0.00 0.00 1.40
351 355 8.423906 AGGTCGATTTAGAGGATGTGTATATT 57.576 34.615 0.00 0.00 0.00 1.28
352 356 7.148222 CGAGGTCGATTTAGAGGATGTGTATAT 60.148 40.741 0.00 0.00 43.02 0.86
353 357 6.148976 CGAGGTCGATTTAGAGGATGTGTATA 59.851 42.308 0.00 0.00 43.02 1.47
354 358 5.048643 CGAGGTCGATTTAGAGGATGTGTAT 60.049 44.000 0.00 0.00 43.02 2.29
355 359 4.275196 CGAGGTCGATTTAGAGGATGTGTA 59.725 45.833 0.00 0.00 43.02 2.90
356 360 3.066900 CGAGGTCGATTTAGAGGATGTGT 59.933 47.826 0.00 0.00 43.02 3.72
357 361 3.315470 TCGAGGTCGATTTAGAGGATGTG 59.685 47.826 0.00 0.00 44.22 3.21
358 362 3.552875 TCGAGGTCGATTTAGAGGATGT 58.447 45.455 0.00 0.00 44.22 3.06
371 375 1.071019 CGTGGACATTGTCGAGGTCG 61.071 60.000 10.56 3.71 39.90 4.79
372 376 1.352156 GCGTGGACATTGTCGAGGTC 61.352 60.000 18.51 10.16 38.31 3.85
373 377 1.374252 GCGTGGACATTGTCGAGGT 60.374 57.895 18.51 0.00 32.65 3.85
374 378 2.100631 GGCGTGGACATTGTCGAGG 61.101 63.158 14.72 14.72 32.65 4.63
375 379 1.079819 AGGCGTGGACATTGTCGAG 60.080 57.895 10.56 5.72 32.65 4.04
376 380 1.374125 CAGGCGTGGACATTGTCGA 60.374 57.895 10.56 3.99 32.65 4.20
377 381 2.779951 TCCAGGCGTGGACATTGTCG 62.780 60.000 23.92 1.59 46.77 4.35
378 382 1.003839 TCCAGGCGTGGACATTGTC 60.004 57.895 23.92 8.34 46.77 3.18
379 383 3.156714 TCCAGGCGTGGACATTGT 58.843 55.556 23.92 0.00 46.77 2.71
386 390 0.888736 TTCACATTGTCCAGGCGTGG 60.889 55.000 19.57 19.57 46.63 4.94
387 391 0.518636 CTTCACATTGTCCAGGCGTG 59.481 55.000 0.00 0.00 0.00 5.34
388 392 0.606401 CCTTCACATTGTCCAGGCGT 60.606 55.000 0.00 0.00 0.00 5.68
389 393 1.926511 GCCTTCACATTGTCCAGGCG 61.927 60.000 16.47 0.00 40.74 5.52
390 394 1.885871 GCCTTCACATTGTCCAGGC 59.114 57.895 16.47 16.47 43.26 4.85
391 395 1.747355 GATGCCTTCACATTGTCCAGG 59.253 52.381 6.46 6.46 0.00 4.45
392 396 1.399440 CGATGCCTTCACATTGTCCAG 59.601 52.381 0.00 0.00 0.00 3.86
393 397 1.271325 ACGATGCCTTCACATTGTCCA 60.271 47.619 0.00 0.00 39.98 4.02
394 398 1.453155 ACGATGCCTTCACATTGTCC 58.547 50.000 0.00 0.00 39.98 4.02
396 400 2.479566 AGACGATGCCTTCACATTGT 57.520 45.000 0.00 0.00 45.44 2.71
397 401 4.393062 AGTTTAGACGATGCCTTCACATTG 59.607 41.667 0.00 0.00 37.44 2.82
398 402 4.579869 AGTTTAGACGATGCCTTCACATT 58.420 39.130 0.00 0.00 0.00 2.71
399 403 4.184629 GAGTTTAGACGATGCCTTCACAT 58.815 43.478 0.00 0.00 0.00 3.21
400 404 3.006430 TGAGTTTAGACGATGCCTTCACA 59.994 43.478 0.00 0.00 0.00 3.58
401 405 3.585862 TGAGTTTAGACGATGCCTTCAC 58.414 45.455 0.00 0.00 0.00 3.18
402 406 3.258372 ACTGAGTTTAGACGATGCCTTCA 59.742 43.478 0.00 0.00 0.00 3.02
403 407 3.851098 ACTGAGTTTAGACGATGCCTTC 58.149 45.455 0.00 0.00 0.00 3.46
404 408 3.963428 ACTGAGTTTAGACGATGCCTT 57.037 42.857 0.00 0.00 0.00 4.35
405 409 3.006967 ACAACTGAGTTTAGACGATGCCT 59.993 43.478 0.00 0.00 0.00 4.75
406 410 3.326747 ACAACTGAGTTTAGACGATGCC 58.673 45.455 0.00 0.00 0.00 4.40
407 411 5.162075 ACTACAACTGAGTTTAGACGATGC 58.838 41.667 16.11 0.00 0.00 3.91
408 412 6.379386 TGACTACAACTGAGTTTAGACGATG 58.621 40.000 16.11 0.00 0.00 3.84
409 413 6.570672 TGACTACAACTGAGTTTAGACGAT 57.429 37.500 16.11 1.01 0.00 3.73
410 414 6.206048 TCATGACTACAACTGAGTTTAGACGA 59.794 38.462 16.11 6.27 0.00 4.20
411 415 6.379386 TCATGACTACAACTGAGTTTAGACG 58.621 40.000 16.11 1.12 0.00 4.18
412 416 8.764524 AATCATGACTACAACTGAGTTTAGAC 57.235 34.615 16.11 12.26 0.00 2.59
413 417 9.424319 GAAATCATGACTACAACTGAGTTTAGA 57.576 33.333 16.11 0.00 28.26 2.10
414 418 9.429359 AGAAATCATGACTACAACTGAGTTTAG 57.571 33.333 0.00 4.30 28.26 1.85
415 419 9.778741 AAGAAATCATGACTACAACTGAGTTTA 57.221 29.630 0.00 0.00 28.26 2.01
416 420 8.682936 AAGAAATCATGACTACAACTGAGTTT 57.317 30.769 0.00 0.00 28.26 2.66
417 421 7.389053 GGAAGAAATCATGACTACAACTGAGTT 59.611 37.037 0.00 0.00 29.91 3.01
418 422 6.876257 GGAAGAAATCATGACTACAACTGAGT 59.124 38.462 0.00 0.00 0.00 3.41
419 423 7.102346 AGGAAGAAATCATGACTACAACTGAG 58.898 38.462 0.00 0.00 0.00 3.35
420 424 7.009179 AGGAAGAAATCATGACTACAACTGA 57.991 36.000 0.00 0.00 0.00 3.41
421 425 7.102346 AGAGGAAGAAATCATGACTACAACTG 58.898 38.462 0.00 0.00 0.00 3.16
422 426 7.251321 AGAGGAAGAAATCATGACTACAACT 57.749 36.000 0.00 0.00 0.00 3.16
423 427 6.536941 GGAGAGGAAGAAATCATGACTACAAC 59.463 42.308 0.00 0.00 0.00 3.32
424 428 6.352222 GGGAGAGGAAGAAATCATGACTACAA 60.352 42.308 0.00 0.00 0.00 2.41
425 429 5.129485 GGGAGAGGAAGAAATCATGACTACA 59.871 44.000 0.00 0.00 0.00 2.74
426 430 5.454045 GGGGAGAGGAAGAAATCATGACTAC 60.454 48.000 0.00 0.00 0.00 2.73
427 431 4.656112 GGGGAGAGGAAGAAATCATGACTA 59.344 45.833 0.00 0.00 0.00 2.59
428 432 3.457749 GGGGAGAGGAAGAAATCATGACT 59.542 47.826 0.00 0.00 0.00 3.41
429 433 3.200825 TGGGGAGAGGAAGAAATCATGAC 59.799 47.826 0.00 0.00 0.00 3.06
430 434 3.457380 CTGGGGAGAGGAAGAAATCATGA 59.543 47.826 0.00 0.00 0.00 3.07
431 435 3.818180 CTGGGGAGAGGAAGAAATCATG 58.182 50.000 0.00 0.00 0.00 3.07
432 436 2.174424 GCTGGGGAGAGGAAGAAATCAT 59.826 50.000 0.00 0.00 0.00 2.45
433 437 1.561542 GCTGGGGAGAGGAAGAAATCA 59.438 52.381 0.00 0.00 0.00 2.57
434 438 1.474143 CGCTGGGGAGAGGAAGAAATC 60.474 57.143 0.00 0.00 0.00 2.17
435 439 0.543749 CGCTGGGGAGAGGAAGAAAT 59.456 55.000 0.00 0.00 0.00 2.17
436 440 0.544357 TCGCTGGGGAGAGGAAGAAA 60.544 55.000 0.00 0.00 0.00 2.52
437 441 1.078528 TCGCTGGGGAGAGGAAGAA 59.921 57.895 0.00 0.00 0.00 2.52
438 442 1.682684 GTCGCTGGGGAGAGGAAGA 60.683 63.158 0.00 0.00 0.00 2.87
439 443 2.896443 GTCGCTGGGGAGAGGAAG 59.104 66.667 0.00 0.00 0.00 3.46
440 444 3.068691 CGTCGCTGGGGAGAGGAA 61.069 66.667 0.00 0.00 30.73 3.36
453 457 4.082523 ATGACAGGTGGGCCGTCG 62.083 66.667 0.00 0.00 39.45 5.12
454 458 2.436646 CATGACAGGTGGGCCGTC 60.437 66.667 0.00 0.00 40.50 4.79
455 459 4.033776 CCATGACAGGTGGGCCGT 62.034 66.667 0.00 0.00 40.50 5.68
456 460 4.033776 ACCATGACAGGTGGGCCG 62.034 66.667 0.00 0.00 41.30 6.13
462 466 1.289160 ATACAGGCACCATGACAGGT 58.711 50.000 0.00 0.00 44.48 4.00
463 467 3.777106 ATATACAGGCACCATGACAGG 57.223 47.619 0.00 0.00 0.00 4.00
464 468 5.473931 GTCTATATACAGGCACCATGACAG 58.526 45.833 0.00 0.00 0.00 3.51
465 469 4.022329 CGTCTATATACAGGCACCATGACA 60.022 45.833 0.00 0.00 0.00 3.58
466 470 4.022242 ACGTCTATATACAGGCACCATGAC 60.022 45.833 0.00 0.00 0.00 3.06
467 471 4.149598 ACGTCTATATACAGGCACCATGA 58.850 43.478 0.00 0.00 0.00 3.07
468 472 4.521130 ACGTCTATATACAGGCACCATG 57.479 45.455 0.00 0.00 0.00 3.66
469 473 4.833380 AGAACGTCTATATACAGGCACCAT 59.167 41.667 0.00 0.00 0.00 3.55
470 474 4.037565 CAGAACGTCTATATACAGGCACCA 59.962 45.833 0.00 0.00 0.00 4.17
471 475 4.277672 TCAGAACGTCTATATACAGGCACC 59.722 45.833 0.00 0.00 0.00 5.01
472 476 5.434352 TCAGAACGTCTATATACAGGCAC 57.566 43.478 0.00 0.00 0.00 5.01
473 477 5.564848 GCATCAGAACGTCTATATACAGGCA 60.565 44.000 0.00 0.00 0.00 4.75
474 478 4.859798 GCATCAGAACGTCTATATACAGGC 59.140 45.833 0.00 0.00 0.00 4.85
475 479 6.013842 TGCATCAGAACGTCTATATACAGG 57.986 41.667 0.00 0.00 0.00 4.00
476 480 7.930513 TTTGCATCAGAACGTCTATATACAG 57.069 36.000 0.00 0.00 0.00 2.74
477 481 7.979537 AGTTTTGCATCAGAACGTCTATATACA 59.020 33.333 0.00 0.00 34.34 2.29
478 482 8.269424 CAGTTTTGCATCAGAACGTCTATATAC 58.731 37.037 0.00 0.00 34.34 1.47
479 483 7.438160 CCAGTTTTGCATCAGAACGTCTATATA 59.562 37.037 0.00 0.00 34.34 0.86
480 484 6.258727 CCAGTTTTGCATCAGAACGTCTATAT 59.741 38.462 0.00 0.00 34.34 0.86
481 485 5.580691 CCAGTTTTGCATCAGAACGTCTATA 59.419 40.000 0.00 0.00 34.34 1.31
482 486 4.393062 CCAGTTTTGCATCAGAACGTCTAT 59.607 41.667 0.00 0.00 34.34 1.98
483 487 3.745975 CCAGTTTTGCATCAGAACGTCTA 59.254 43.478 0.00 0.00 34.34 2.59
484 488 2.549754 CCAGTTTTGCATCAGAACGTCT 59.450 45.455 0.00 0.00 34.34 4.18
485 489 2.548057 TCCAGTTTTGCATCAGAACGTC 59.452 45.455 0.00 0.00 34.34 4.34
486 490 2.290641 GTCCAGTTTTGCATCAGAACGT 59.709 45.455 0.00 0.00 34.34 3.99
487 491 2.662791 CGTCCAGTTTTGCATCAGAACG 60.663 50.000 0.00 0.00 34.34 3.95
488 492 2.290641 ACGTCCAGTTTTGCATCAGAAC 59.709 45.455 0.00 0.00 0.00 3.01
489 493 2.290367 CACGTCCAGTTTTGCATCAGAA 59.710 45.455 0.00 0.00 0.00 3.02
490 494 1.872952 CACGTCCAGTTTTGCATCAGA 59.127 47.619 0.00 0.00 0.00 3.27
491 495 1.603802 ACACGTCCAGTTTTGCATCAG 59.396 47.619 0.00 0.00 0.00 2.90
492 496 1.674359 ACACGTCCAGTTTTGCATCA 58.326 45.000 0.00 0.00 0.00 3.07
493 497 5.293324 TCATATACACGTCCAGTTTTGCATC 59.707 40.000 0.00 0.00 0.00 3.91
494 498 5.182487 TCATATACACGTCCAGTTTTGCAT 58.818 37.500 0.00 0.00 0.00 3.96
495 499 4.570930 TCATATACACGTCCAGTTTTGCA 58.429 39.130 0.00 0.00 0.00 4.08
496 500 4.034048 CCTCATATACACGTCCAGTTTTGC 59.966 45.833 0.00 0.00 0.00 3.68
497 501 4.570772 CCCTCATATACACGTCCAGTTTTG 59.429 45.833 0.00 0.00 0.00 2.44
498 502 4.468510 TCCCTCATATACACGTCCAGTTTT 59.531 41.667 0.00 0.00 0.00 2.43
499 503 4.028131 TCCCTCATATACACGTCCAGTTT 58.972 43.478 0.00 0.00 0.00 2.66
500 504 3.638860 TCCCTCATATACACGTCCAGTT 58.361 45.455 0.00 0.00 0.00 3.16
501 505 3.308035 TCCCTCATATACACGTCCAGT 57.692 47.619 0.00 0.00 0.00 4.00
502 506 4.524714 AGATTCCCTCATATACACGTCCAG 59.475 45.833 0.00 0.00 0.00 3.86
503 507 4.480115 AGATTCCCTCATATACACGTCCA 58.520 43.478 0.00 0.00 0.00 4.02
504 508 5.470047 AAGATTCCCTCATATACACGTCC 57.530 43.478 0.00 0.00 0.00 4.79
505 509 6.750148 AGAAAGATTCCCTCATATACACGTC 58.250 40.000 0.00 0.00 0.00 4.34
506 510 6.732896 AGAAAGATTCCCTCATATACACGT 57.267 37.500 0.00 0.00 0.00 4.49
507 511 8.024285 GTCTAGAAAGATTCCCTCATATACACG 58.976 40.741 0.00 0.00 33.30 4.49
508 512 8.308207 GGTCTAGAAAGATTCCCTCATATACAC 58.692 40.741 0.00 0.00 33.30 2.90
509 513 8.010697 TGGTCTAGAAAGATTCCCTCATATACA 58.989 37.037 0.00 0.00 33.30 2.29
510 514 8.423906 TGGTCTAGAAAGATTCCCTCATATAC 57.576 38.462 0.00 0.00 33.30 1.47
511 515 9.621239 AATGGTCTAGAAAGATTCCCTCATATA 57.379 33.333 0.00 0.00 33.30 0.86
512 516 8.381636 CAATGGTCTAGAAAGATTCCCTCATAT 58.618 37.037 0.00 0.00 33.30 1.78
513 517 7.348274 ACAATGGTCTAGAAAGATTCCCTCATA 59.652 37.037 0.00 0.00 33.30 2.15
514 518 6.159398 ACAATGGTCTAGAAAGATTCCCTCAT 59.841 38.462 0.00 0.00 33.30 2.90
515 519 5.488919 ACAATGGTCTAGAAAGATTCCCTCA 59.511 40.000 0.00 0.00 33.30 3.86
516 520 5.995446 ACAATGGTCTAGAAAGATTCCCTC 58.005 41.667 0.00 0.00 33.30 4.30
517 521 5.995446 GACAATGGTCTAGAAAGATTCCCT 58.005 41.667 0.00 0.00 40.99 4.20
554 558 9.006839 CCAATAGCATGTGTATATTTGATGTCT 57.993 33.333 0.00 0.00 0.00 3.41
555 559 9.002600 TCCAATAGCATGTGTATATTTGATGTC 57.997 33.333 0.00 0.00 0.00 3.06
556 560 8.922931 TCCAATAGCATGTGTATATTTGATGT 57.077 30.769 0.00 0.00 0.00 3.06
560 564 8.918658 GCATTTCCAATAGCATGTGTATATTTG 58.081 33.333 0.00 0.00 0.00 2.32
561 565 8.863086 AGCATTTCCAATAGCATGTGTATATTT 58.137 29.630 0.00 0.00 0.00 1.40
562 566 8.413309 AGCATTTCCAATAGCATGTGTATATT 57.587 30.769 0.00 0.00 0.00 1.28
563 567 7.886970 AGAGCATTTCCAATAGCATGTGTATAT 59.113 33.333 0.00 0.00 0.00 0.86
564 568 7.226441 AGAGCATTTCCAATAGCATGTGTATA 58.774 34.615 0.00 0.00 0.00 1.47
565 569 6.066690 AGAGCATTTCCAATAGCATGTGTAT 58.933 36.000 0.00 0.00 0.00 2.29
566 570 5.439721 AGAGCATTTCCAATAGCATGTGTA 58.560 37.500 0.00 0.00 0.00 2.90
567 571 4.275810 AGAGCATTTCCAATAGCATGTGT 58.724 39.130 0.00 0.00 0.00 3.72
568 572 4.913335 AGAGCATTTCCAATAGCATGTG 57.087 40.909 0.00 0.00 0.00 3.21
569 573 5.008019 CGTAAGAGCATTTCCAATAGCATGT 59.992 40.000 0.00 0.00 43.02 3.21
570 574 5.237127 TCGTAAGAGCATTTCCAATAGCATG 59.763 40.000 0.00 0.00 45.01 4.06
571 575 5.368145 TCGTAAGAGCATTTCCAATAGCAT 58.632 37.500 0.00 0.00 45.01 3.79
572 576 4.765273 TCGTAAGAGCATTTCCAATAGCA 58.235 39.130 0.00 0.00 45.01 3.49
588 592 2.660189 AATACGTGGGTGGTCGTAAG 57.340 50.000 0.00 0.00 43.78 2.34
589 593 3.399440 AAAATACGTGGGTGGTCGTAA 57.601 42.857 0.00 0.00 43.78 3.18
590 594 4.734398 ATAAAATACGTGGGTGGTCGTA 57.266 40.909 0.00 0.00 44.47 3.43
593 597 4.687483 CGGATATAAAATACGTGGGTGGTC 59.313 45.833 0.00 0.00 0.00 4.02
603 607 6.832549 GCGATTGCAACGGATATAAAATAC 57.167 37.500 18.46 0.06 42.15 1.89
668 3605 0.179111 CCGGCTCGAGCATGAAGTTA 60.179 55.000 36.27 0.00 44.36 2.24
669 3606 1.448540 CCGGCTCGAGCATGAAGTT 60.449 57.895 36.27 0.00 44.36 2.66
770 3709 2.104928 TGATACGCGCTGCCTCTG 59.895 61.111 5.73 0.00 0.00 3.35
833 3784 2.002127 GCTCCTTCAGCGTCAATCG 58.998 57.895 0.00 0.00 38.76 3.34
877 3828 3.879885 CGACCACCACCCACCCAA 61.880 66.667 0.00 0.00 0.00 4.12
1215 4166 2.683933 GGGACGAGGAAGGAGCCA 60.684 66.667 0.00 0.00 0.00 4.75
1482 4433 0.687757 CAGGTAGGAGGTAGGCTGCA 60.688 60.000 4.64 0.00 0.00 4.41
1515 4466 0.893727 AGCCGGTGACATTGTTTCCC 60.894 55.000 1.90 0.00 0.00 3.97
1606 4557 3.108376 CCTTAAGGAGGTAGAGGCAGTT 58.892 50.000 17.21 0.00 40.95 3.16
1722 4673 0.040067 CAAAGAAGCACGAACCAGCC 60.040 55.000 0.00 0.00 0.00 4.85
1779 4730 1.153469 GCTCCTACTGTCAGCAGCC 60.153 63.158 0.00 0.00 46.30 4.85
1812 4763 1.524621 GGCGGTGATGGACTCCATG 60.525 63.158 15.78 2.17 45.26 3.66
1840 4791 2.750948 GTCGTAGGTGAACTTGAGCAA 58.249 47.619 0.00 0.00 0.00 3.91
1914 4865 1.798283 TGTACACATTTCCGAACCCG 58.202 50.000 0.00 0.00 0.00 5.28
1923 4874 1.146982 AGCACCCCCTTGTACACATTT 59.853 47.619 0.00 0.00 0.00 2.32
2100 5051 0.677731 ACACAATCATCCGCTGGTGG 60.678 55.000 0.00 0.00 0.00 4.61
2226 5177 2.283529 ACGGTGCAGGTAGGACAGG 61.284 63.158 0.00 0.00 40.89 4.00
2377 5328 1.909781 CCATTGTGCCAGCAACCCT 60.910 57.895 0.00 0.00 0.00 4.34
2397 5348 2.232452 GGCATACTCTGGAGCGACATAT 59.768 50.000 0.00 0.00 0.00 1.78
2553 5504 3.920093 CTTCCCCCTCCGCACCAAC 62.920 68.421 0.00 0.00 0.00 3.77
2646 5597 2.393768 CGGATGTGTGCAGAGTGCC 61.394 63.158 0.00 0.00 44.23 5.01
3189 6150 5.432885 ACAAAGACACTTATTTTGGGACG 57.567 39.130 1.88 0.00 36.41 4.79
3218 6190 5.935789 TCCGTCCCAAAATAAGTGTCTTAAG 59.064 40.000 0.00 0.00 0.00 1.85
3219 6191 5.867330 TCCGTCCCAAAATAAGTGTCTTAA 58.133 37.500 0.00 0.00 0.00 1.85
3220 6192 5.484715 CTCCGTCCCAAAATAAGTGTCTTA 58.515 41.667 0.00 0.00 0.00 2.10
3221 6193 4.324267 CTCCGTCCCAAAATAAGTGTCTT 58.676 43.478 0.00 0.00 0.00 3.01
3222 6194 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
3223 6195 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
3224 6196 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
3322 6295 5.835280 ACCTTGTTCTTCCAACTGAATGATT 59.165 36.000 0.00 0.00 31.06 2.57
3420 6394 6.351711 CCTCCACTCTAACATCATCTTTCTGT 60.352 42.308 0.00 0.00 0.00 3.41
3421 6395 6.047870 CCTCCACTCTAACATCATCTTTCTG 58.952 44.000 0.00 0.00 0.00 3.02
3524 6498 7.500227 CCACCACATCAGACATATGTAAAAGAT 59.500 37.037 8.71 7.10 35.82 2.40
3662 6636 7.409408 TGGAGAACTAGGTTCCTAGATATCT 57.591 40.000 26.61 23.38 42.85 1.98
3689 6663 1.002087 GTACCTCCAGTGTCAACAGGG 59.998 57.143 0.00 0.00 33.82 4.45
3717 6691 4.774124 TCATTATCAGAACAGAGCTTGGG 58.226 43.478 0.00 0.00 0.00 4.12
3720 6694 8.749026 AAATGATCATTATCAGAACAGAGCTT 57.251 30.769 21.00 0.00 45.17 3.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.