Multiple sequence alignment - TraesCS4D01G106600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G106600 chr4D 100.000 4066 0 0 1 4066 84798947 84794882 0.000000e+00 7509
1 TraesCS4D01G106600 chr4A 92.862 1429 97 4 1706 3133 498134621 498133197 0.000000e+00 2069
2 TraesCS4D01G106600 chr4A 72.716 2331 560 67 1442 3729 498988397 498986100 0.000000e+00 712
3 TraesCS4D01G106600 chr4A 88.514 592 30 22 1 586 498210401 498209842 0.000000e+00 682
4 TraesCS4D01G106600 chr4A 92.526 388 17 7 1 385 498144759 498144381 2.760000e-151 545
5 TraesCS4D01G106600 chr4A 77.536 966 174 25 3112 4063 541785923 541786859 3.570000e-150 542
6 TraesCS4D01G106600 chr4A 91.789 341 25 2 796 1136 498209044 498208707 4.760000e-129 472
7 TraesCS4D01G106600 chr4A 84.570 337 34 6 581 899 498138122 498137786 6.560000e-83 318
8 TraesCS4D01G106600 chr4A 82.039 206 12 14 380 584 498138362 498138181 7.040000e-33 152
9 TraesCS4D01G106600 chr3D 77.592 955 169 29 3112 4049 1635135 1634209 1.660000e-148 536
10 TraesCS4D01G106600 chr3D 72.662 1390 341 30 2363 3729 26282514 26283887 3.760000e-115 425
11 TraesCS4D01G106600 chr3B 77.182 951 167 33 3104 4034 5173831 5174751 3.630000e-140 508
12 TraesCS4D01G106600 chr3B 76.898 922 167 29 3146 4049 3662433 3661540 7.900000e-132 481
13 TraesCS4D01G106600 chr3A 72.309 1542 391 32 1985 3508 36284502 36286025 2.230000e-122 449
14 TraesCS4D01G106600 chrUn 81.454 399 50 12 3318 3706 480652057 480652441 5.110000e-79 305
15 TraesCS4D01G106600 chrUn 74.194 341 67 14 3284 3613 325243067 325243397 5.520000e-24 122
16 TraesCS4D01G106600 chr6D 75.781 384 67 15 3249 3624 2351160 2350795 1.940000e-38 171


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G106600 chr4D 84794882 84798947 4065 True 7509.000000 7509 100.000000 1 4066 1 chr4D.!!$R1 4065
1 TraesCS4D01G106600 chr4A 498133197 498138362 5165 True 846.333333 2069 86.490333 380 3133 3 chr4A.!!$R3 2753
2 TraesCS4D01G106600 chr4A 498986100 498988397 2297 True 712.000000 712 72.716000 1442 3729 1 chr4A.!!$R2 2287
3 TraesCS4D01G106600 chr4A 498208707 498210401 1694 True 577.000000 682 90.151500 1 1136 2 chr4A.!!$R4 1135
4 TraesCS4D01G106600 chr4A 541785923 541786859 936 False 542.000000 542 77.536000 3112 4063 1 chr4A.!!$F1 951
5 TraesCS4D01G106600 chr3D 1634209 1635135 926 True 536.000000 536 77.592000 3112 4049 1 chr3D.!!$R1 937
6 TraesCS4D01G106600 chr3D 26282514 26283887 1373 False 425.000000 425 72.662000 2363 3729 1 chr3D.!!$F1 1366
7 TraesCS4D01G106600 chr3B 5173831 5174751 920 False 508.000000 508 77.182000 3104 4034 1 chr3B.!!$F1 930
8 TraesCS4D01G106600 chr3B 3661540 3662433 893 True 481.000000 481 76.898000 3146 4049 1 chr3B.!!$R1 903
9 TraesCS4D01G106600 chr3A 36284502 36286025 1523 False 449.000000 449 72.309000 1985 3508 1 chr3A.!!$F1 1523

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
211 215 0.676466 CAACGGTGGGAGCAGCATTA 60.676 55.0 0.00 0.0 0.00 1.90 F
1187 3353 0.032130 GACAGCACCGACTTCTGTGA 59.968 55.0 5.09 0.0 40.74 3.58 F
1189 3355 0.032678 CAGCACCGACTTCTGTGACT 59.967 55.0 5.09 0.0 33.67 3.41 F
1190 3356 0.032678 AGCACCGACTTCTGTGACTG 59.967 55.0 5.09 0.0 33.67 3.51 F
1277 4045 0.035439 TTGGTCGGGCAAATCTCTCC 60.035 55.0 0.00 0.0 0.00 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1168 3334 0.032130 TCACAGAAGTCGGTGCTGTC 59.968 55.000 6.70 0.0 40.63 3.51 R
2642 5676 0.817634 TACAGTTGCCCAGTGTGTGC 60.818 55.000 4.13 0.0 39.59 4.57 R
2892 5926 0.929244 CCCTGGTTTCCATGGATCCT 59.071 55.000 26.42 0.0 40.99 3.24 R
3031 6067 0.998669 GCATAAATGGCCGCAACAAC 59.001 50.000 0.00 0.0 0.00 3.32 R
3177 6213 2.098443 GCTATAGCTGCCTCTACCGATC 59.902 54.545 17.75 0.0 38.21 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 44 5.598416 AATCCTTGCCCTTGCTAAAATAC 57.402 39.130 0.00 0.00 38.71 1.89
44 46 5.444744 TCCTTGCCCTTGCTAAAATACTA 57.555 39.130 0.00 0.00 38.71 1.82
45 47 6.013554 TCCTTGCCCTTGCTAAAATACTAT 57.986 37.500 0.00 0.00 38.71 2.12
46 48 5.827797 TCCTTGCCCTTGCTAAAATACTATG 59.172 40.000 0.00 0.00 38.71 2.23
47 49 5.594317 CCTTGCCCTTGCTAAAATACTATGT 59.406 40.000 0.00 0.00 38.71 2.29
48 50 6.770785 CCTTGCCCTTGCTAAAATACTATGTA 59.229 38.462 0.00 0.00 38.71 2.29
49 51 7.448469 CCTTGCCCTTGCTAAAATACTATGTAT 59.552 37.037 0.00 0.00 38.71 2.29
50 52 7.744087 TGCCCTTGCTAAAATACTATGTATG 57.256 36.000 0.00 0.00 38.71 2.39
51 53 6.206634 TGCCCTTGCTAAAATACTATGTATGC 59.793 38.462 0.00 0.00 38.71 3.14
52 54 6.620733 GCCCTTGCTAAAATACTATGTATGCG 60.621 42.308 0.00 0.00 33.53 4.73
72 74 2.279517 GCATCGACCGCCTACCTG 60.280 66.667 0.00 0.00 0.00 4.00
75 77 2.125961 ATCGACCGCCTACCTGACC 61.126 63.158 0.00 0.00 0.00 4.02
108 110 6.700978 TCGGTACAAAGTTAAACGTGTTAAC 58.299 36.000 17.93 17.93 35.66 2.01
211 215 0.676466 CAACGGTGGGAGCAGCATTA 60.676 55.000 0.00 0.00 0.00 1.90
220 224 2.648059 GGAGCAGCATTAACAGTGGAT 58.352 47.619 0.00 0.00 0.00 3.41
254 258 5.404946 TGACGAGGGTTCTAAAATAAGTCG 58.595 41.667 0.00 0.00 0.00 4.18
272 276 1.065851 TCGTTCAGGCGCATTATCGTA 59.934 47.619 10.83 0.00 0.00 3.43
288 292 7.866393 GCATTATCGTAGGTTGTACTGAACTAT 59.134 37.037 0.00 0.00 0.00 2.12
342 346 7.853524 CAAACACATGTATCAGTTTGCAAAAT 58.146 30.769 20.13 10.45 42.66 1.82
391 395 6.660887 TTTTGTTTCAGACTTTCAAATGGC 57.339 33.333 0.00 0.00 0.00 4.40
410 414 4.420168 TGGCTTCTCTTGAAAACGTTTTG 58.580 39.130 29.67 15.94 0.00 2.44
449 453 6.028146 TCCAAAACGCATGAACTAGTAGTA 57.972 37.500 2.50 0.00 0.00 1.82
450 454 6.097356 TCCAAAACGCATGAACTAGTAGTAG 58.903 40.000 2.50 2.87 0.00 2.57
451 455 5.867716 CCAAAACGCATGAACTAGTAGTAGT 59.132 40.000 2.50 4.29 41.61 2.73
452 456 6.034683 CCAAAACGCATGAACTAGTAGTAGTC 59.965 42.308 10.69 0.00 38.66 2.59
460 465 7.569226 GCATGAACTAGTAGTAGTCTAGTACGC 60.569 44.444 10.69 9.20 44.67 4.42
494 500 4.177673 TTTTTACGCCACCCACCC 57.822 55.556 0.00 0.00 0.00 4.61
496 502 2.294170 TTTTTACGCCACCCACCCCA 62.294 55.000 0.00 0.00 0.00 4.96
497 503 2.700407 TTTTACGCCACCCACCCCAG 62.700 60.000 0.00 0.00 0.00 4.45
498 504 4.642488 TACGCCACCCACCCCAGA 62.642 66.667 0.00 0.00 0.00 3.86
501 507 4.660938 GCCACCCACCCCAGACAC 62.661 72.222 0.00 0.00 0.00 3.67
502 508 3.174987 CCACCCACCCCAGACACA 61.175 66.667 0.00 0.00 0.00 3.72
503 509 2.431683 CACCCACCCCAGACACAG 59.568 66.667 0.00 0.00 0.00 3.66
504 510 3.570212 ACCCACCCCAGACACAGC 61.570 66.667 0.00 0.00 0.00 4.40
505 511 4.704833 CCCACCCCAGACACAGCG 62.705 72.222 0.00 0.00 0.00 5.18
511 517 4.700365 CCAGACACAGCGCGTCGA 62.700 66.667 8.43 0.00 38.46 4.20
512 518 3.168604 CAGACACAGCGCGTCGAG 61.169 66.667 8.43 0.00 38.46 4.04
513 519 4.406173 AGACACAGCGCGTCGAGG 62.406 66.667 8.43 0.00 38.46 4.63
514 520 4.702081 GACACAGCGCGTCGAGGT 62.702 66.667 8.43 0.00 0.00 3.85
607 676 2.473984 GCATGTTTCTCAAGCAGTTTGC 59.526 45.455 0.00 0.00 45.46 3.68
620 689 2.558359 GCAGTTTGCCTACCAGTTGATT 59.442 45.455 0.00 0.00 37.42 2.57
624 693 4.702131 AGTTTGCCTACCAGTTGATTGATC 59.298 41.667 0.00 0.00 0.00 2.92
663 733 5.278660 GCAAAATTCTTCAGCAAGGAGAAGA 60.279 40.000 6.16 0.00 46.09 2.87
678 748 5.268387 AGGAGAAGATCAAGTAGCAGAGAA 58.732 41.667 0.00 0.00 0.00 2.87
680 750 5.105554 GGAGAAGATCAAGTAGCAGAGAACA 60.106 44.000 0.00 0.00 0.00 3.18
681 751 5.964758 AGAAGATCAAGTAGCAGAGAACAG 58.035 41.667 0.00 0.00 0.00 3.16
682 752 5.480073 AGAAGATCAAGTAGCAGAGAACAGT 59.520 40.000 0.00 0.00 0.00 3.55
686 756 5.584253 TCAAGTAGCAGAGAACAGTATCC 57.416 43.478 0.00 0.00 0.00 2.59
724 794 6.040504 AGCACATGACAGATCAATATTTGCAT 59.959 34.615 0.00 0.00 38.69 3.96
725 795 6.362551 GCACATGACAGATCAATATTTGCATC 59.637 38.462 0.00 0.00 38.69 3.91
726 796 7.649057 CACATGACAGATCAATATTTGCATCT 58.351 34.615 0.00 0.00 38.69 2.90
727 797 7.591426 CACATGACAGATCAATATTTGCATCTG 59.409 37.037 18.88 18.88 43.30 2.90
730 800 6.320418 TGACAGATCAATATTTGCATCTGCTT 59.680 34.615 19.74 8.84 42.48 3.91
731 801 7.108841 ACAGATCAATATTTGCATCTGCTTT 57.891 32.000 19.74 6.64 42.48 3.51
732 802 8.229253 ACAGATCAATATTTGCATCTGCTTTA 57.771 30.769 19.74 0.00 42.48 1.85
734 804 8.965172 CAGATCAATATTTGCATCTGCTTTAAC 58.035 33.333 12.63 0.00 42.66 2.01
735 805 8.689061 AGATCAATATTTGCATCTGCTTTAACA 58.311 29.630 3.53 0.00 42.66 2.41
736 806 8.638685 ATCAATATTTGCATCTGCTTTAACAC 57.361 30.769 3.53 0.00 42.66 3.32
738 808 8.306038 TCAATATTTGCATCTGCTTTAACACTT 58.694 29.630 3.53 0.00 42.66 3.16
739 809 8.589629 CAATATTTGCATCTGCTTTAACACTTC 58.410 33.333 3.53 0.00 42.66 3.01
754 845 3.411446 ACACTTCCGCTGATTTCATTCA 58.589 40.909 0.00 0.00 0.00 2.57
831 1430 5.467738 AGGGTGATCAGAACTATACATCCA 58.532 41.667 0.00 0.00 31.80 3.41
839 1438 3.584848 AGAACTATACATCCATCCCAGCC 59.415 47.826 0.00 0.00 0.00 4.85
845 1444 2.377810 ATCCATCCCAGCCGCTTCA 61.378 57.895 0.00 0.00 0.00 3.02
846 1445 1.713005 ATCCATCCCAGCCGCTTCAT 61.713 55.000 0.00 0.00 0.00 2.57
942 2057 4.437772 AGTACTAGTTGCCTTCGTTCTC 57.562 45.455 0.00 0.00 0.00 2.87
945 2060 3.851098 ACTAGTTGCCTTCGTTCTCATC 58.149 45.455 0.00 0.00 0.00 2.92
957 2072 6.150140 CCTTCGTTCTCATCAATTTTCTCCTT 59.850 38.462 0.00 0.00 0.00 3.36
959 2074 6.467677 TCGTTCTCATCAATTTTCTCCTTCT 58.532 36.000 0.00 0.00 0.00 2.85
999 2524 0.604578 GAAATCAGGCAAGGCAAGCA 59.395 50.000 3.65 0.00 0.00 3.91
1014 2539 2.094597 GCAAGCAATGATGGTTACTGCA 60.095 45.455 0.00 0.00 45.07 4.41
1017 2542 3.012518 AGCAATGATGGTTACTGCAGTC 58.987 45.455 25.56 10.13 35.44 3.51
1081 3247 1.127567 TACCACCTGCAGCTCCTTGT 61.128 55.000 8.66 0.00 0.00 3.16
1140 3306 7.432350 GTTCAAGAACTCAATCAGTCAAGAT 57.568 36.000 5.72 0.00 38.25 2.40
1141 3307 7.517321 GTTCAAGAACTCAATCAGTCAAGATC 58.483 38.462 5.72 0.00 38.25 2.75
1146 3312 5.432680 ACTCAATCAGTCAAGATCCACAT 57.567 39.130 0.00 0.00 0.00 3.21
1147 3313 5.426504 ACTCAATCAGTCAAGATCCACATC 58.573 41.667 0.00 0.00 0.00 3.06
1148 3314 5.046087 ACTCAATCAGTCAAGATCCACATCA 60.046 40.000 0.00 0.00 0.00 3.07
1150 3316 5.878669 TCAATCAGTCAAGATCCACATCAAG 59.121 40.000 0.00 0.00 0.00 3.02
1151 3317 3.603532 TCAGTCAAGATCCACATCAAGC 58.396 45.455 0.00 0.00 0.00 4.01
1154 3320 3.009916 AGTCAAGATCCACATCAAGCCTT 59.990 43.478 0.00 0.00 0.00 4.35
1157 3323 2.097825 AGATCCACATCAAGCCTTTGC 58.902 47.619 0.00 0.00 34.21 3.68
1160 3326 0.109597 CCACATCAAGCCTTTGCGTC 60.110 55.000 0.00 0.00 44.33 5.19
1163 3329 0.453282 CATCAAGCCTTTGCGTCGTG 60.453 55.000 0.00 0.00 44.33 4.35
1164 3330 1.577328 ATCAAGCCTTTGCGTCGTGG 61.577 55.000 0.00 0.00 44.33 4.94
1165 3331 2.110213 AAGCCTTTGCGTCGTGGA 59.890 55.556 0.00 0.00 44.33 4.02
1166 3332 1.525077 AAGCCTTTGCGTCGTGGAA 60.525 52.632 0.00 0.00 44.33 3.53
1167 3333 1.782028 AAGCCTTTGCGTCGTGGAAC 61.782 55.000 0.00 0.00 44.33 3.62
1178 3344 2.028484 GTGGAACGACAGCACCGA 59.972 61.111 0.00 0.00 0.00 4.69
1181 3347 1.300697 GGAACGACAGCACCGACTT 60.301 57.895 0.00 0.00 0.00 3.01
1182 3348 1.282930 GGAACGACAGCACCGACTTC 61.283 60.000 0.00 0.00 0.00 3.01
1184 3350 0.597637 AACGACAGCACCGACTTCTG 60.598 55.000 0.00 0.00 0.00 3.02
1186 3352 1.278172 CGACAGCACCGACTTCTGTG 61.278 60.000 0.00 0.00 40.74 3.66
1187 3353 0.032130 GACAGCACCGACTTCTGTGA 59.968 55.000 5.09 0.00 40.74 3.58
1188 3354 0.249489 ACAGCACCGACTTCTGTGAC 60.249 55.000 5.09 0.00 39.36 3.67
1189 3355 0.032678 CAGCACCGACTTCTGTGACT 59.967 55.000 5.09 0.00 33.67 3.41
1190 3356 0.032678 AGCACCGACTTCTGTGACTG 59.967 55.000 5.09 0.00 33.67 3.51
1191 3357 0.946221 GCACCGACTTCTGTGACTGG 60.946 60.000 5.09 0.00 33.67 4.00
1192 3358 0.319900 CACCGACTTCTGTGACTGGG 60.320 60.000 0.00 0.00 33.67 4.45
1193 3359 1.293498 CCGACTTCTGTGACTGGGG 59.707 63.158 0.00 0.00 0.00 4.96
1194 3360 1.185618 CCGACTTCTGTGACTGGGGA 61.186 60.000 0.00 0.00 0.00 4.81
1195 3361 0.244994 CGACTTCTGTGACTGGGGAG 59.755 60.000 0.00 0.00 0.00 4.30
1202 3970 1.004918 GTGACTGGGGAGGTGTTCG 60.005 63.158 0.00 0.00 0.00 3.95
1208 3976 2.743928 GGGAGGTGTTCGCTGCAG 60.744 66.667 10.11 10.11 35.94 4.41
1209 3977 2.743928 GGAGGTGTTCGCTGCAGG 60.744 66.667 17.12 5.82 0.00 4.85
1210 3978 2.343758 GAGGTGTTCGCTGCAGGA 59.656 61.111 17.12 8.36 0.00 3.86
1211 3979 1.078848 GAGGTGTTCGCTGCAGGAT 60.079 57.895 17.12 0.00 0.00 3.24
1212 3980 1.364626 GAGGTGTTCGCTGCAGGATG 61.365 60.000 17.12 0.00 40.87 3.51
1214 3982 0.955428 GGTGTTCGCTGCAGGATGAA 60.955 55.000 17.12 2.08 39.69 2.57
1229 3997 3.152261 GATGAAGAATCCACGTCGAGT 57.848 47.619 0.00 0.00 0.00 4.18
1230 3998 2.631418 TGAAGAATCCACGTCGAGTC 57.369 50.000 2.23 2.23 0.00 3.36
1232 4000 2.251893 GAAGAATCCACGTCGAGTCAC 58.748 52.381 12.92 3.25 29.28 3.67
1233 4001 1.535833 AGAATCCACGTCGAGTCACT 58.464 50.000 12.92 0.00 29.28 3.41
1234 4002 1.887198 AGAATCCACGTCGAGTCACTT 59.113 47.619 12.92 0.00 29.28 3.16
1235 4003 2.095161 AGAATCCACGTCGAGTCACTTC 60.095 50.000 12.92 0.00 29.28 3.01
1237 4005 0.873054 TCCACGTCGAGTCACTTCTC 59.127 55.000 0.00 0.00 0.00 2.87
1238 4006 0.875728 CCACGTCGAGTCACTTCTCT 59.124 55.000 0.00 0.00 32.83 3.10
1239 4007 1.267261 CCACGTCGAGTCACTTCTCTT 59.733 52.381 0.00 0.00 32.83 2.85
1241 4009 2.031944 CACGTCGAGTCACTTCTCTTGA 60.032 50.000 0.00 0.00 32.83 3.02
1244 4012 2.554893 GTCGAGTCACTTCTCTTGACCT 59.445 50.000 0.00 0.00 43.85 3.85
1245 4013 3.004944 GTCGAGTCACTTCTCTTGACCTT 59.995 47.826 0.00 0.00 43.85 3.50
1247 4015 3.612955 CGAGTCACTTCTCTTGACCTTCC 60.613 52.174 0.00 0.00 43.85 3.46
1249 4017 2.036089 GTCACTTCTCTTGACCTTCCGT 59.964 50.000 0.00 0.00 37.93 4.69
1250 4018 3.255149 GTCACTTCTCTTGACCTTCCGTA 59.745 47.826 0.00 0.00 37.93 4.02
1251 4019 3.255149 TCACTTCTCTTGACCTTCCGTAC 59.745 47.826 0.00 0.00 0.00 3.67
1252 4020 3.005472 CACTTCTCTTGACCTTCCGTACA 59.995 47.826 0.00 0.00 0.00 2.90
1253 4021 3.640029 ACTTCTCTTGACCTTCCGTACAA 59.360 43.478 0.00 0.00 0.00 2.41
1255 4023 4.252971 TCTCTTGACCTTCCGTACAAAG 57.747 45.455 0.00 0.00 0.00 2.77
1262 4030 2.578786 CCTTCCGTACAAAGGTTTGGT 58.421 47.619 13.52 0.00 42.34 3.67
1263 4031 2.551032 CCTTCCGTACAAAGGTTTGGTC 59.449 50.000 13.52 0.00 42.34 4.02
1264 4032 1.868469 TCCGTACAAAGGTTTGGTCG 58.132 50.000 7.35 9.94 42.34 4.79
1265 4033 0.869730 CCGTACAAAGGTTTGGTCGG 59.130 55.000 18.67 18.67 44.62 4.79
1266 4034 0.869730 CGTACAAAGGTTTGGTCGGG 59.130 55.000 7.35 0.00 42.34 5.14
1267 4035 0.594602 GTACAAAGGTTTGGTCGGGC 59.405 55.000 7.35 0.00 42.34 6.13
1268 4036 0.183014 TACAAAGGTTTGGTCGGGCA 59.817 50.000 7.35 0.00 42.34 5.36
1270 4038 0.461961 CAAAGGTTTGGTCGGGCAAA 59.538 50.000 0.00 0.00 34.59 3.68
1271 4039 1.069978 CAAAGGTTTGGTCGGGCAAAT 59.930 47.619 0.00 0.00 34.59 2.32
1272 4040 0.966179 AAGGTTTGGTCGGGCAAATC 59.034 50.000 0.00 0.00 0.00 2.17
1274 4042 0.526211 GGTTTGGTCGGGCAAATCTC 59.474 55.000 0.00 0.00 0.00 2.75
1276 4044 1.468914 GTTTGGTCGGGCAAATCTCTC 59.531 52.381 0.00 0.00 0.00 3.20
1277 4045 0.035439 TTGGTCGGGCAAATCTCTCC 60.035 55.000 0.00 0.00 0.00 3.71
1278 4046 1.521681 GGTCGGGCAAATCTCTCCG 60.522 63.158 0.00 0.00 43.42 4.63
1279 4047 1.218316 GTCGGGCAAATCTCTCCGT 59.782 57.895 0.00 0.00 42.71 4.69
1281 4049 1.878522 CGGGCAAATCTCTCCGTCG 60.879 63.158 0.00 0.00 37.92 5.12
1282 4050 2.174319 GGGCAAATCTCTCCGTCGC 61.174 63.158 0.00 0.00 0.00 5.19
1283 4051 1.153549 GGCAAATCTCTCCGTCGCT 60.154 57.895 0.00 0.00 0.00 4.93
1285 4053 1.475441 GCAAATCTCTCCGTCGCTCG 61.475 60.000 0.00 0.00 39.52 5.03
1312 4080 8.624776 GGAACCTAACATTCCTGAAATATCTTG 58.375 37.037 0.00 0.00 42.15 3.02
1313 4081 9.178758 GAACCTAACATTCCTGAAATATCTTGT 57.821 33.333 0.00 0.00 0.00 3.16
1314 4082 8.738645 ACCTAACATTCCTGAAATATCTTGTC 57.261 34.615 0.00 0.00 0.00 3.18
1318 4086 6.725364 ACATTCCTGAAATATCTTGTCCTGT 58.275 36.000 0.00 0.00 0.00 4.00
1319 4087 6.825721 ACATTCCTGAAATATCTTGTCCTGTC 59.174 38.462 0.00 0.00 0.00 3.51
1320 4088 5.011090 TCCTGAAATATCTTGTCCTGTCG 57.989 43.478 0.00 0.00 0.00 4.35
1321 4089 4.122776 CCTGAAATATCTTGTCCTGTCGG 58.877 47.826 0.00 0.00 0.00 4.79
1322 4090 4.141937 CCTGAAATATCTTGTCCTGTCGGA 60.142 45.833 0.00 0.00 36.83 4.55
1337 4281 3.723348 GGACAACCGCTTCACCGC 61.723 66.667 0.00 0.00 0.00 5.68
1343 4287 4.514577 CCGCTTCACCGCCGAGAT 62.515 66.667 0.00 0.00 0.00 2.75
1344 4288 2.509336 CGCTTCACCGCCGAGATT 60.509 61.111 0.00 0.00 0.00 2.40
1349 4293 1.956629 TTCACCGCCGAGATTCCTCC 61.957 60.000 0.00 0.00 36.04 4.30
1353 4297 1.068250 CGCCGAGATTCCTCCTTCC 59.932 63.158 0.00 0.00 36.04 3.46
1354 4298 1.448069 GCCGAGATTCCTCCTTCCC 59.552 63.158 0.00 0.00 36.04 3.97
1355 4299 1.051556 GCCGAGATTCCTCCTTCCCT 61.052 60.000 0.00 0.00 36.04 4.20
1360 4304 2.171659 GAGATTCCTCCTTCCCTTGGTC 59.828 54.545 0.00 0.00 33.30 4.02
1362 4306 2.059756 TTCCTCCTTCCCTTGGTCAT 57.940 50.000 0.00 0.00 0.00 3.06
1363 4307 1.584724 TCCTCCTTCCCTTGGTCATC 58.415 55.000 0.00 0.00 0.00 2.92
1365 4309 1.918957 CCTCCTTCCCTTGGTCATCTT 59.081 52.381 0.00 0.00 0.00 2.40
1366 4310 2.092699 CCTCCTTCCCTTGGTCATCTTC 60.093 54.545 0.00 0.00 0.00 2.87
1368 4312 1.279271 CCTTCCCTTGGTCATCTTCGT 59.721 52.381 0.00 0.00 0.00 3.85
1369 4313 2.622436 CTTCCCTTGGTCATCTTCGTC 58.378 52.381 0.00 0.00 0.00 4.20
1370 4314 0.530744 TCCCTTGGTCATCTTCGTCG 59.469 55.000 0.00 0.00 0.00 5.12
1371 4315 1.084370 CCCTTGGTCATCTTCGTCGC 61.084 60.000 0.00 0.00 0.00 5.19
1373 4317 0.108615 CTTGGTCATCTTCGTCGCCT 60.109 55.000 0.00 0.00 0.00 5.52
1375 4319 1.227002 GGTCATCTTCGTCGCCTCC 60.227 63.158 0.00 0.00 0.00 4.30
1376 4320 1.586564 GTCATCTTCGTCGCCTCCG 60.587 63.158 0.00 0.00 0.00 4.63
1378 4322 2.754658 ATCTTCGTCGCCTCCGGT 60.755 61.111 0.00 0.00 34.56 5.28
1379 4323 1.452651 ATCTTCGTCGCCTCCGGTA 60.453 57.895 0.00 0.00 34.56 4.02
1381 4325 1.008767 CTTCGTCGCCTCCGGTATC 60.009 63.158 0.00 0.00 34.56 2.24
1382 4326 1.445716 CTTCGTCGCCTCCGGTATCT 61.446 60.000 0.00 0.00 34.56 1.98
1383 4327 1.442526 TTCGTCGCCTCCGGTATCTC 61.443 60.000 0.00 0.00 34.56 2.75
1384 4328 1.892862 CGTCGCCTCCGGTATCTCT 60.893 63.158 0.00 0.00 34.56 3.10
1386 4330 0.873721 GTCGCCTCCGGTATCTCTAC 59.126 60.000 0.00 0.00 34.56 2.59
1387 4331 0.250640 TCGCCTCCGGTATCTCTACC 60.251 60.000 0.00 0.00 43.55 3.18
1388 4332 0.250814 CGCCTCCGGTATCTCTACCT 60.251 60.000 0.00 0.00 44.63 3.08
1389 4333 1.818522 CGCCTCCGGTATCTCTACCTT 60.819 57.143 0.00 0.00 44.63 3.50
1391 4335 3.083293 GCCTCCGGTATCTCTACCTTAG 58.917 54.545 0.00 0.00 44.63 2.18
1393 4337 3.083293 CTCCGGTATCTCTACCTTAGCC 58.917 54.545 0.00 0.00 44.63 3.93
1395 4339 1.811359 CGGTATCTCTACCTTAGCCCG 59.189 57.143 0.72 0.00 44.63 6.13
1397 4341 2.819019 GGTATCTCTACCTTAGCCCGAC 59.181 54.545 0.00 0.00 43.62 4.79
1398 4342 1.998222 ATCTCTACCTTAGCCCGACC 58.002 55.000 0.00 0.00 0.00 4.79
1399 4343 0.627451 TCTCTACCTTAGCCCGACCA 59.373 55.000 0.00 0.00 0.00 4.02
1400 4344 1.006281 TCTCTACCTTAGCCCGACCAA 59.994 52.381 0.00 0.00 0.00 3.67
1402 4346 1.551883 TCTACCTTAGCCCGACCAAAC 59.448 52.381 0.00 0.00 0.00 2.93
1403 4347 0.614812 TACCTTAGCCCGACCAAACC 59.385 55.000 0.00 0.00 0.00 3.27
1406 4350 1.165270 CTTAGCCCGACCAAACCTTG 58.835 55.000 0.00 0.00 0.00 3.61
1407 4351 0.766131 TTAGCCCGACCAAACCTTGA 59.234 50.000 0.00 0.00 0.00 3.02
1408 4352 0.988832 TAGCCCGACCAAACCTTGAT 59.011 50.000 0.00 0.00 0.00 2.57
1410 4354 0.893727 GCCCGACCAAACCTTGATGT 60.894 55.000 0.00 0.00 0.00 3.06
1411 4355 0.881118 CCCGACCAAACCTTGATGTG 59.119 55.000 0.00 0.00 0.00 3.21
1412 4356 1.604604 CCGACCAAACCTTGATGTGT 58.395 50.000 0.00 0.00 0.00 3.72
1414 4358 2.360801 CCGACCAAACCTTGATGTGTTT 59.639 45.455 0.00 0.00 35.15 2.83
1415 4359 3.566322 CCGACCAAACCTTGATGTGTTTA 59.434 43.478 0.00 0.00 33.57 2.01
1416 4360 4.036971 CCGACCAAACCTTGATGTGTTTAA 59.963 41.667 0.00 0.00 33.57 1.52
1417 4361 5.212194 CGACCAAACCTTGATGTGTTTAAG 58.788 41.667 0.00 0.00 33.57 1.85
1424 4368 5.314923 CCTTGATGTGTTTAAGGTGGATG 57.685 43.478 0.00 0.00 36.94 3.51
1425 4369 4.766891 CCTTGATGTGTTTAAGGTGGATGT 59.233 41.667 0.00 0.00 36.94 3.06
1426 4370 5.943416 CCTTGATGTGTTTAAGGTGGATGTA 59.057 40.000 0.00 0.00 36.94 2.29
1427 4371 6.128007 CCTTGATGTGTTTAAGGTGGATGTAC 60.128 42.308 0.00 0.00 36.94 2.90
1428 4372 5.250200 TGATGTGTTTAAGGTGGATGTACC 58.750 41.667 0.00 0.00 41.17 3.34
1429 4373 3.666274 TGTGTTTAAGGTGGATGTACCG 58.334 45.455 0.00 0.00 45.56 4.02
1430 4374 3.324268 TGTGTTTAAGGTGGATGTACCGA 59.676 43.478 0.00 0.00 45.56 4.69
1432 4376 4.390909 GTGTTTAAGGTGGATGTACCGAAG 59.609 45.833 0.00 0.00 45.56 3.79
1433 4377 2.973694 TAAGGTGGATGTACCGAAGC 57.026 50.000 0.00 0.00 45.56 3.86
1434 4378 0.981183 AAGGTGGATGTACCGAAGCA 59.019 50.000 0.00 0.00 45.56 3.91
1436 4380 0.535335 GGTGGATGTACCGAAGCAGA 59.465 55.000 0.00 0.00 42.61 4.26
1437 4381 1.066430 GGTGGATGTACCGAAGCAGAA 60.066 52.381 0.00 0.00 42.61 3.02
1438 4382 2.271800 GTGGATGTACCGAAGCAGAAG 58.728 52.381 0.00 0.00 42.61 2.85
1439 4383 1.899814 TGGATGTACCGAAGCAGAAGT 59.100 47.619 0.00 0.00 42.61 3.01
1440 4384 2.271800 GGATGTACCGAAGCAGAAGTG 58.728 52.381 0.00 0.00 0.00 3.16
1445 4389 0.759346 ACCGAAGCAGAAGTGACCTT 59.241 50.000 0.00 0.00 0.00 3.50
1448 4392 2.028930 CCGAAGCAGAAGTGACCTTAGT 60.029 50.000 0.00 0.00 0.00 2.24
1466 4500 6.170506 CCTTAGTAATAACACACTGCAAGGA 58.829 40.000 0.00 0.00 39.30 3.36
1467 4501 6.313905 CCTTAGTAATAACACACTGCAAGGAG 59.686 42.308 0.00 0.00 39.30 3.69
1469 4503 1.826385 ATAACACACTGCAAGGAGGC 58.174 50.000 0.00 0.00 39.30 4.70
1475 4509 1.091771 CACTGCAAGGAGGCATACCG 61.092 60.000 0.00 0.00 43.97 4.02
1484 4518 0.373716 GAGGCATACCGAGTTTTGCG 59.626 55.000 0.00 0.00 42.76 4.85
1487 4521 1.400494 GGCATACCGAGTTTTGCGAAT 59.600 47.619 0.00 0.00 35.95 3.34
1493 4527 2.287368 ACCGAGTTTTGCGAATTGTTCC 60.287 45.455 0.00 0.00 0.00 3.62
1495 4529 2.973224 CGAGTTTTGCGAATTGTTCCAG 59.027 45.455 0.00 0.00 0.00 3.86
1499 4533 4.097892 AGTTTTGCGAATTGTTCCAGTCTT 59.902 37.500 0.00 0.00 0.00 3.01
1500 4534 3.624326 TTGCGAATTGTTCCAGTCTTG 57.376 42.857 0.00 0.00 0.00 3.02
1504 4538 3.664107 CGAATTGTTCCAGTCTTGAGGA 58.336 45.455 0.00 0.00 0.00 3.71
1505 4539 3.681897 CGAATTGTTCCAGTCTTGAGGAG 59.318 47.826 0.00 0.00 34.91 3.69
1506 4540 4.561530 CGAATTGTTCCAGTCTTGAGGAGA 60.562 45.833 0.00 0.00 34.91 3.71
1509 4543 5.407407 TTGTTCCAGTCTTGAGGAGATAC 57.593 43.478 0.00 0.00 36.61 2.24
1510 4544 4.678256 TGTTCCAGTCTTGAGGAGATACT 58.322 43.478 0.00 0.00 36.61 2.12
1514 4548 3.068024 CCAGTCTTGAGGAGATACTGCTC 59.932 52.174 12.13 12.13 46.73 4.26
1525 4559 3.722147 AGATACTGCTCAACGGCAATAG 58.278 45.455 0.00 0.00 41.94 1.73
1526 4560 3.133003 AGATACTGCTCAACGGCAATAGT 59.867 43.478 0.00 0.00 41.94 2.12
1527 4561 2.185004 ACTGCTCAACGGCAATAGTT 57.815 45.000 0.00 0.00 41.94 2.24
1531 4565 2.418628 TGCTCAACGGCAATAGTTTAGC 59.581 45.455 7.94 7.94 44.52 3.09
1536 4570 1.557832 ACGGCAATAGTTTAGCTGGGA 59.442 47.619 0.00 0.00 38.93 4.37
1537 4571 2.026636 ACGGCAATAGTTTAGCTGGGAA 60.027 45.455 0.00 0.00 38.93 3.97
1547 4581 0.465705 TAGCTGGGAAGATTCCTGCG 59.534 55.000 11.28 2.14 46.72 5.18
1550 4584 0.471617 CTGGGAAGATTCCTGCGGAT 59.528 55.000 11.28 0.00 46.72 4.18
1552 4586 1.312815 GGGAAGATTCCTGCGGATTG 58.687 55.000 11.28 0.00 46.72 2.67
1560 4594 2.443394 CCTGCGGATTGGCCTCCTA 61.443 63.158 3.32 0.00 32.77 2.94
1568 4602 2.422093 GGATTGGCCTCCTAACCTTCAG 60.422 54.545 3.32 0.00 32.18 3.02
1569 4603 1.742308 TTGGCCTCCTAACCTTCAGT 58.258 50.000 3.32 0.00 0.00 3.41
1572 4606 2.185387 GGCCTCCTAACCTTCAGTACA 58.815 52.381 0.00 0.00 0.00 2.90
1575 4609 3.451178 GCCTCCTAACCTTCAGTACATGA 59.549 47.826 0.00 0.00 35.62 3.07
1576 4610 4.442192 GCCTCCTAACCTTCAGTACATGAG 60.442 50.000 0.00 0.00 39.68 2.90
1577 4611 4.442192 CCTCCTAACCTTCAGTACATGAGC 60.442 50.000 0.00 0.00 39.68 4.26
1583 4617 2.932614 CCTTCAGTACATGAGCCTTTCG 59.067 50.000 0.00 0.00 39.68 3.46
1625 4659 1.210204 TCCCTGCCTCTCTTGCCAAT 61.210 55.000 0.00 0.00 0.00 3.16
1626 4660 0.750911 CCCTGCCTCTCTTGCCAATC 60.751 60.000 0.00 0.00 0.00 2.67
1632 4666 2.877300 GCCTCTCTTGCCAATCTCACAA 60.877 50.000 0.00 0.00 0.00 3.33
1637 4671 3.159472 TCTTGCCAATCTCACAATGCTT 58.841 40.909 0.00 0.00 0.00 3.91
1640 4674 5.243507 TCTTGCCAATCTCACAATGCTTAAA 59.756 36.000 0.00 0.00 0.00 1.52
1641 4675 5.063180 TGCCAATCTCACAATGCTTAAAG 57.937 39.130 0.00 0.00 0.00 1.85
1643 4677 5.419788 TGCCAATCTCACAATGCTTAAAGAT 59.580 36.000 0.00 0.00 0.00 2.40
1648 4682 9.073368 CAATCTCACAATGCTTAAAGATTTCAG 57.927 33.333 0.00 0.00 32.62 3.02
1649 4683 7.149569 TCTCACAATGCTTAAAGATTTCAGG 57.850 36.000 0.00 0.00 0.00 3.86
1650 4684 6.942005 TCTCACAATGCTTAAAGATTTCAGGA 59.058 34.615 0.00 0.00 0.00 3.86
1652 4686 7.765307 TCACAATGCTTAAAGATTTCAGGATC 58.235 34.615 0.00 0.00 0.00 3.36
1653 4687 6.976925 CACAATGCTTAAAGATTTCAGGATCC 59.023 38.462 2.48 2.48 0.00 3.36
1654 4688 6.894103 ACAATGCTTAAAGATTTCAGGATCCT 59.106 34.615 9.02 9.02 0.00 3.24
1655 4689 7.398332 ACAATGCTTAAAGATTTCAGGATCCTT 59.602 33.333 13.00 0.00 0.00 3.36
1657 4691 9.479549 AATGCTTAAAGATTTCAGGATCCTTTA 57.520 29.630 13.00 3.46 0.00 1.85
1658 4692 8.281212 TGCTTAAAGATTTCAGGATCCTTTAC 57.719 34.615 13.00 2.36 0.00 2.01
1664 4698 7.693969 AGATTTCAGGATCCTTTACAACAAG 57.306 36.000 13.00 0.00 0.00 3.16
1667 4701 7.687941 TTTCAGGATCCTTTACAACAAGATC 57.312 36.000 13.00 0.00 0.00 2.75
1674 4708 3.684788 CCTTTACAACAAGATCGAGGGTG 59.315 47.826 0.00 0.00 0.00 4.61
1679 4713 3.513912 ACAACAAGATCGAGGGTGACATA 59.486 43.478 6.39 0.00 0.00 2.29
1701 4735 3.502211 ACCGGATGAGTTTGCAAAGTTAG 59.498 43.478 20.15 7.45 0.00 2.34
1729 4763 1.598130 AGGGCTTGTTCGTCACAGC 60.598 57.895 0.00 0.00 36.48 4.40
1826 4860 0.612744 GTTTCAGAGGAGAGCTGCCT 59.387 55.000 4.43 4.43 38.81 4.75
1835 4869 1.474855 GGAGAGCTGCCTTCCAATCTC 60.475 57.143 13.38 9.09 36.40 2.75
1996 5030 2.866762 GCTCTATCGGCAAACTAACCAG 59.133 50.000 0.00 0.00 0.00 4.00
2000 5034 2.922740 TCGGCAAACTAACCAGACTT 57.077 45.000 0.00 0.00 0.00 3.01
2075 5109 3.927142 GGCAGTTTATGTATAGCCTAGCG 59.073 47.826 0.00 0.00 39.02 4.26
2094 5128 1.321743 CGAATTGCACTGAGCTACGAC 59.678 52.381 0.00 0.00 45.94 4.34
2095 5129 2.611518 GAATTGCACTGAGCTACGACT 58.388 47.619 0.00 0.00 45.94 4.18
2114 5148 4.406943 GACTTTTCTCGATGCATGGAAAC 58.593 43.478 12.74 2.51 0.00 2.78
2169 5203 3.553828 ACCTTTCTGTTCACCTCGAAA 57.446 42.857 0.00 0.00 34.69 3.46
2170 5204 3.203716 ACCTTTCTGTTCACCTCGAAAC 58.796 45.455 0.00 0.00 34.69 2.78
2242 5276 4.278419 AGAAAACTTTCCCAACCTGATTCG 59.722 41.667 0.00 0.00 37.92 3.34
2255 5289 2.368439 CTGATTCGCTTGGGATTGGAA 58.632 47.619 0.00 0.00 0.00 3.53
2364 5398 4.574599 GGATTTATCCCAATGTCACTGC 57.425 45.455 0.00 0.00 41.20 4.40
2440 5474 2.509964 ACATACCCCCAAGCTTAGGAAG 59.490 50.000 13.02 5.97 0.00 3.46
2458 5492 0.893447 AGCCTCCAAATGCTTCAAGC 59.107 50.000 1.04 1.04 42.82 4.01
2478 5512 6.250315 TCAAGCATTACGCATTGATAAAAACG 59.750 34.615 0.00 0.00 46.13 3.60
2585 5619 5.239525 AGAACTTCCTAGCAACATTGACAAC 59.760 40.000 0.00 0.00 0.00 3.32
2633 5667 5.049680 CGTTTCATCCAATAAACTATCCGGG 60.050 44.000 0.00 0.00 34.21 5.73
2642 5676 3.975168 AAACTATCCGGGGATATTCCG 57.025 47.619 0.00 10.39 46.43 4.30
2654 5688 0.748005 ATATTCCGCACACACTGGGC 60.748 55.000 0.00 0.00 44.98 5.36
2681 5715 5.421277 TGTAGAAGTTTGGAACGAGTTGAA 58.579 37.500 0.00 0.00 36.23 2.69
2743 5777 2.953020 CAGTGAACTGAGTGTCCTAGC 58.047 52.381 4.36 0.00 46.59 3.42
2817 5851 3.277715 GGGGATCTTCAGCTTCTTCAAG 58.722 50.000 0.00 0.00 0.00 3.02
2822 5856 6.183360 GGGATCTTCAGCTTCTTCAAGAAATC 60.183 42.308 0.48 0.00 33.19 2.17
2870 5904 1.682344 GGCCCCAGCGAAAGGAATT 60.682 57.895 0.00 0.00 41.24 2.17
2892 5926 2.713877 TCAATAATGCAGCTGCTGTGA 58.286 42.857 36.61 26.58 42.66 3.58
2945 5979 1.206371 GCACCGGAGTTACACCTACAT 59.794 52.381 9.46 0.00 0.00 2.29
2966 6000 2.137523 GCATGTCCTTTTGTGCCTTTG 58.862 47.619 0.00 0.00 0.00 2.77
2997 6031 8.557864 CAGATAAGAAGAAGCAATCTATTGTGG 58.442 37.037 4.71 0.00 37.42 4.17
3031 6067 5.580691 TGATTCCAGTAGCAAATCGTGTTAG 59.419 40.000 0.00 0.00 33.13 2.34
3166 6202 2.262423 AGCAACTGAAGGGTTCTCAC 57.738 50.000 0.00 0.00 0.00 3.51
3171 6207 2.625639 ACTGAAGGGTTCTCACCATCT 58.374 47.619 0.00 0.00 46.43 2.90
3177 6213 5.945784 TGAAGGGTTCTCACCATCTAATTTG 59.054 40.000 0.00 0.00 46.43 2.32
3189 6225 4.932200 CCATCTAATTTGATCGGTAGAGGC 59.068 45.833 0.00 0.00 0.00 4.70
3192 6228 2.246719 ATTTGATCGGTAGAGGCAGC 57.753 50.000 0.00 0.00 0.00 5.25
3198 6234 1.535833 TCGGTAGAGGCAGCTATAGC 58.464 55.000 17.33 17.33 42.49 2.97
3215 6251 6.155827 GCTATAGCTCTGTGTATCAAGGAAG 58.844 44.000 17.75 0.00 38.21 3.46
3224 6260 7.556844 TCTGTGTATCAAGGAAGACTATTTCC 58.443 38.462 0.00 0.00 45.71 3.13
3277 6313 1.408702 GCCTAGAGACAAGAGGAGCAG 59.591 57.143 0.00 0.00 31.45 4.24
3278 6314 2.031120 CCTAGAGACAAGAGGAGCAGG 58.969 57.143 0.00 0.00 31.45 4.85
3293 6329 1.353694 AGCAGGGAAGAGCTTCATTGT 59.646 47.619 11.90 0.00 41.20 2.71
3294 6330 2.165998 GCAGGGAAGAGCTTCATTGTT 58.834 47.619 11.90 0.00 41.20 2.83
3301 6337 5.159209 GGAAGAGCTTCATTGTTGAATGTG 58.841 41.667 11.90 0.00 40.95 3.21
3357 6393 2.289945 CCCTATCCTAACTGCATGCTCC 60.290 54.545 20.33 0.00 0.00 4.70
3384 6420 7.833183 AGCACTGATTCTAGAGGAAATGATTTT 59.167 33.333 0.00 0.00 37.49 1.82
3393 6429 8.950210 TCTAGAGGAAATGATTTTAAAGCACTG 58.050 33.333 0.00 0.00 0.00 3.66
3457 6493 2.202932 CGGCTCGGGGTGATGAAG 60.203 66.667 0.00 0.00 0.00 3.02
3460 6496 2.989639 CTCGGGGTGATGAAGGCA 59.010 61.111 0.00 0.00 0.00 4.75
3493 6529 6.985188 TGAACTATATTTCACTGGCTCAAC 57.015 37.500 1.60 0.00 30.29 3.18
3529 6573 1.086067 CAGATGCAGTGGCGTACCTG 61.086 60.000 0.00 0.00 45.35 4.00
3535 6579 3.047877 GTGGCGTACCTGCACCAC 61.048 66.667 6.20 6.20 45.22 4.16
3543 6587 2.668185 TACCTGCACCACAACCACCG 62.668 60.000 0.00 0.00 0.00 4.94
3550 6594 1.966451 CCACAACCACCGAGGAAGC 60.966 63.158 0.00 0.00 41.22 3.86
3613 6657 7.333323 TGGATAATGATATGGTAGCTCATGTG 58.667 38.462 0.00 0.00 30.31 3.21
3632 6676 2.029918 GTGGGAGATTTTGGACTTGCAC 60.030 50.000 0.00 0.00 0.00 4.57
3648 6701 1.802636 CACGGTTGCATGTCCATCC 59.197 57.895 0.00 0.00 0.00 3.51
3649 6702 0.677731 CACGGTTGCATGTCCATCCT 60.678 55.000 0.00 0.00 0.00 3.24
3650 6703 0.677731 ACGGTTGCATGTCCATCCTG 60.678 55.000 0.00 0.00 0.00 3.86
3651 6704 1.811860 GGTTGCATGTCCATCCTGC 59.188 57.895 0.00 0.00 38.00 4.85
3652 6705 0.966875 GGTTGCATGTCCATCCTGCA 60.967 55.000 0.00 0.00 43.70 4.41
3653 6706 1.108776 GTTGCATGTCCATCCTGCAT 58.891 50.000 0.00 0.00 44.47 3.96
3654 6707 1.066605 GTTGCATGTCCATCCTGCATC 59.933 52.381 0.00 0.00 44.47 3.91
3655 6708 0.466739 TGCATGTCCATCCTGCATCC 60.467 55.000 0.00 0.00 41.37 3.51
3706 6759 1.002201 TCGGTTGCGATAAAGGGAACA 59.998 47.619 0.00 0.00 37.45 3.18
3730 6783 7.457852 ACAATAGGATATGTTGCTCCAGGTATA 59.542 37.037 0.00 0.00 33.54 1.47
3732 6785 9.729550 AATAGGATATGTTGCTCCAGGTATATA 57.270 33.333 0.00 0.00 33.75 0.86
3734 6787 8.629821 AGGATATGTTGCTCCAGGTATATATT 57.370 34.615 0.00 0.00 33.75 1.28
3735 6788 8.489489 AGGATATGTTGCTCCAGGTATATATTG 58.511 37.037 0.00 0.00 33.75 1.90
3739 6792 5.368230 TGTTGCTCCAGGTATATATTGTCCA 59.632 40.000 0.00 0.00 0.00 4.02
3740 6793 5.745312 TGCTCCAGGTATATATTGTCCAG 57.255 43.478 0.00 0.00 0.00 3.86
3747 6800 9.442062 TCCAGGTATATATTGTCCAGTTTTAGA 57.558 33.333 0.00 0.00 0.00 2.10
3778 6831 5.391312 TTTTTCTTCCTTAGCCTGATTGC 57.609 39.130 0.00 0.00 0.00 3.56
3780 6833 4.307032 TTCTTCCTTAGCCTGATTGCTT 57.693 40.909 0.00 0.00 42.75 3.91
3782 6835 3.264193 TCTTCCTTAGCCTGATTGCTTGA 59.736 43.478 0.00 0.00 42.75 3.02
3783 6836 3.719268 TCCTTAGCCTGATTGCTTGAA 57.281 42.857 0.00 0.00 42.75 2.69
3794 6847 5.929992 CCTGATTGCTTGAACATGTGAATTT 59.070 36.000 0.00 0.00 0.00 1.82
3802 6859 7.648908 TGCTTGAACATGTGAATTTGAACTAAG 59.351 33.333 0.00 0.00 0.00 2.18
3833 6890 8.498054 GCTACATGCATGGTATATACAGAATT 57.502 34.615 29.41 6.76 42.31 2.17
3856 6913 0.478507 AGGGGGTGGTCAAGTTTCAG 59.521 55.000 0.00 0.00 0.00 3.02
3859 6916 0.467290 GGGTGGTCAAGTTTCAGCCA 60.467 55.000 11.69 0.00 45.35 4.75
3861 6918 0.668535 GTGGTCAAGTTTCAGCCACC 59.331 55.000 0.00 0.00 42.58 4.61
3880 6937 1.075542 CGCCGATGTTTACAGCTTCA 58.924 50.000 0.00 0.00 0.00 3.02
3885 6942 3.074412 CGATGTTTACAGCTTCAGGGTT 58.926 45.455 0.00 0.00 0.00 4.11
3905 6962 6.434340 AGGGTTGTTCTCCTTGAAATATTCAC 59.566 38.462 0.00 0.00 39.87 3.18
3906 6963 6.350194 GGGTTGTTCTCCTTGAAATATTCACC 60.350 42.308 0.00 0.00 39.87 4.02
3926 6983 1.602237 GAAGGAGGCCAACGGATGA 59.398 57.895 5.01 0.00 0.00 2.92
3939 6996 3.634397 ACGGATGACATGTTCAAGGAT 57.366 42.857 0.00 0.00 37.92 3.24
3951 7008 3.949754 TGTTCAAGGATGGATTGAGCATC 59.050 43.478 1.76 0.00 41.20 3.91
3969 7026 3.624861 GCATCATGAAGTTCGTGGAGATT 59.375 43.478 22.03 3.28 34.27 2.40
3975 7032 7.608153 TCATGAAGTTCGTGGAGATTAACTTA 58.392 34.615 22.03 0.00 41.08 2.24
3981 7038 5.320549 TCGTGGAGATTAACTTACCTGAC 57.679 43.478 0.00 0.00 0.00 3.51
3997 7054 4.910195 ACCTGACAAGATGTTGCAGATTA 58.090 39.130 20.73 0.00 38.80 1.75
4008 7065 6.711194 AGATGTTGCAGATTATTGATCCAGAG 59.289 38.462 0.00 0.00 35.21 3.35
4050 7107 2.196319 CCAAGAAGCTCCAATGGCC 58.804 57.895 0.00 0.00 0.00 5.36
4056 7113 2.514824 GCTCCAATGGCCGAGGAC 60.515 66.667 6.53 0.00 0.00 3.85
4063 7120 2.234586 ATGGCCGAGGACATTGGAT 58.765 52.632 4.27 0.00 41.93 3.41
4064 7121 0.109342 ATGGCCGAGGACATTGGATC 59.891 55.000 4.27 0.00 41.93 3.36
4065 7122 1.271127 TGGCCGAGGACATTGGATCA 61.271 55.000 0.00 0.00 33.64 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 6.431722 AGTATTTTAGCAAGGGCAAGGATTA 58.568 36.000 0.00 0.00 44.61 1.75
75 77 2.567985 ACTTTGTACCGAACCACCAAG 58.432 47.619 0.00 0.00 0.00 3.61
86 88 6.935055 CGTTAACACGTTTAACTTTGTACC 57.065 37.500 20.68 4.11 41.84 3.34
173 175 3.126001 TGATTGAGACCAACGAAAGCT 57.874 42.857 0.00 0.00 34.72 3.74
211 215 6.597672 TCGTCATTTTATAAGCATCCACTGTT 59.402 34.615 0.00 0.00 0.00 3.16
220 224 5.741011 AGAACCCTCGTCATTTTATAAGCA 58.259 37.500 0.00 0.00 0.00 3.91
248 252 2.658373 TAATGCGCCTGAACGACTTA 57.342 45.000 4.18 0.00 34.06 2.24
254 258 1.792949 CCTACGATAATGCGCCTGAAC 59.207 52.381 4.18 0.00 33.86 3.18
272 276 5.745227 CATCCCAATAGTTCAGTACAACCT 58.255 41.667 0.00 0.00 0.00 3.50
331 335 7.495279 TCATGCAGTTTTCTTATTTTGCAAACT 59.505 29.630 12.39 9.52 43.72 2.66
342 346 4.365514 TGGGAGTCATGCAGTTTTCTTA 57.634 40.909 0.00 0.00 0.00 2.10
350 354 2.634815 AAGCTATGGGAGTCATGCAG 57.365 50.000 0.00 0.00 37.30 4.41
391 395 5.361599 GTGCAAAACGTTTTCAAGAGAAG 57.638 39.130 22.90 10.66 34.71 2.85
410 414 2.668280 GGAACGAGAACCTGCGTGC 61.668 63.158 0.00 0.00 41.06 5.34
436 440 7.495901 TGCGTACTAGACTACTACTAGTTCAT 58.504 38.462 0.00 0.00 45.24 2.57
449 453 2.893637 CAAAGGCATGCGTACTAGACT 58.106 47.619 14.17 0.00 0.00 3.24
450 454 1.327764 GCAAAGGCATGCGTACTAGAC 59.672 52.381 14.17 0.00 40.72 2.59
451 455 1.651987 GCAAAGGCATGCGTACTAGA 58.348 50.000 14.17 0.00 40.72 2.43
481 487 4.642488 TCTGGGGTGGGTGGCGTA 62.642 66.667 0.00 0.00 0.00 4.42
494 500 4.700365 TCGACGCGCTGTGTCTGG 62.700 66.667 5.73 0.00 40.44 3.86
496 502 4.406173 CCTCGACGCGCTGTGTCT 62.406 66.667 5.73 0.00 40.44 3.41
497 503 4.702081 ACCTCGACGCGCTGTGTC 62.702 66.667 5.73 4.67 39.38 3.67
502 508 4.961511 TTTGCACCTCGACGCGCT 62.962 61.111 5.73 0.00 0.00 5.92
503 509 3.515286 TTTTTGCACCTCGACGCGC 62.515 57.895 5.73 0.00 0.00 6.86
504 510 2.629210 TTTTTGCACCTCGACGCG 59.371 55.556 3.53 3.53 0.00 6.01
607 676 3.384789 TCGGAGATCAATCAACTGGTAGG 59.615 47.826 0.00 0.00 0.00 3.18
620 689 1.414181 GCTTTCCCTGATCGGAGATCA 59.586 52.381 11.61 11.61 45.12 2.92
624 693 2.113860 TTTGCTTTCCCTGATCGGAG 57.886 50.000 2.08 0.00 32.13 4.63
663 733 5.221145 CGGATACTGTTCTCTGCTACTTGAT 60.221 44.000 0.00 0.00 0.00 2.57
678 748 3.609853 TGAAGTACGTACCGGATACTGT 58.390 45.455 21.80 11.56 37.88 3.55
680 750 2.615912 GCTGAAGTACGTACCGGATACT 59.384 50.000 21.80 7.55 0.00 2.12
681 751 2.355756 TGCTGAAGTACGTACCGGATAC 59.644 50.000 21.80 6.28 0.00 2.24
682 752 2.355756 GTGCTGAAGTACGTACCGGATA 59.644 50.000 21.80 4.13 0.00 2.59
686 756 1.917955 CATGTGCTGAAGTACGTACCG 59.082 52.381 21.80 9.42 33.15 4.02
703 773 6.582672 GCAGATGCAAATATTGATCTGTCATG 59.417 38.462 21.81 4.68 41.73 3.07
705 775 5.826208 AGCAGATGCAAATATTGATCTGTCA 59.174 36.000 21.81 8.34 41.73 3.58
724 794 2.143122 CAGCGGAAGTGTTAAAGCAGA 58.857 47.619 0.00 0.00 0.00 4.26
725 795 2.143122 TCAGCGGAAGTGTTAAAGCAG 58.857 47.619 0.00 0.00 0.00 4.24
726 796 2.248280 TCAGCGGAAGTGTTAAAGCA 57.752 45.000 0.00 0.00 0.00 3.91
727 797 3.831715 AATCAGCGGAAGTGTTAAAGC 57.168 42.857 0.00 0.00 0.00 3.51
730 800 5.471797 TGAATGAAATCAGCGGAAGTGTTAA 59.528 36.000 0.00 0.00 0.00 2.01
731 801 5.000591 TGAATGAAATCAGCGGAAGTGTTA 58.999 37.500 0.00 0.00 0.00 2.41
732 802 3.820467 TGAATGAAATCAGCGGAAGTGTT 59.180 39.130 0.00 0.00 0.00 3.32
734 804 4.424061 TTGAATGAAATCAGCGGAAGTG 57.576 40.909 0.00 0.00 0.00 3.16
735 805 4.676196 GCATTGAATGAAATCAGCGGAAGT 60.676 41.667 9.76 0.00 0.00 3.01
736 806 3.795101 GCATTGAATGAAATCAGCGGAAG 59.205 43.478 9.76 0.00 0.00 3.46
738 808 2.754002 TGCATTGAATGAAATCAGCGGA 59.246 40.909 9.76 0.00 0.00 5.54
739 809 3.153676 TGCATTGAATGAAATCAGCGG 57.846 42.857 9.76 0.00 0.00 5.52
781 872 6.086241 GTGTAGAATGCACGTTTGTAATTGTG 59.914 38.462 0.00 0.00 42.99 3.33
831 1430 1.131638 TTCTATGAAGCGGCTGGGAT 58.868 50.000 1.81 0.00 0.00 3.85
839 1438 6.089476 AGATCGATGTATGTTCTATGAAGCG 58.911 40.000 0.54 0.00 0.00 4.68
846 1445 9.063615 TGTTAGCTAAGATCGATGTATGTTCTA 57.936 33.333 6.38 0.00 0.00 2.10
931 1530 5.302357 AGAAAATTGATGAGAACGAAGGC 57.698 39.130 0.00 0.00 0.00 4.35
932 1531 5.645497 AGGAGAAAATTGATGAGAACGAAGG 59.355 40.000 0.00 0.00 0.00 3.46
963 2078 7.587629 CCTGATTTCGTCATTATGTGCATATT 58.412 34.615 0.00 0.00 35.97 1.28
966 2081 4.261322 GCCTGATTTCGTCATTATGTGCAT 60.261 41.667 0.00 0.00 35.97 3.96
978 2503 0.883833 CTTGCCTTGCCTGATTTCGT 59.116 50.000 0.00 0.00 0.00 3.85
979 2504 0.457337 GCTTGCCTTGCCTGATTTCG 60.457 55.000 0.00 0.00 0.00 3.46
981 2506 1.050204 TTGCTTGCCTTGCCTGATTT 58.950 45.000 0.00 0.00 0.00 2.17
984 2509 0.540133 TCATTGCTTGCCTTGCCTGA 60.540 50.000 0.00 0.00 0.00 3.86
999 2524 3.012518 GCTGACTGCAGTAACCATCATT 58.987 45.455 21.73 0.00 44.17 2.57
1081 3247 2.481969 GCATGTCTGTCTCGCTTCCATA 60.482 50.000 0.00 0.00 0.00 2.74
1138 3304 1.202222 CGCAAAGGCTTGATGTGGATC 60.202 52.381 0.00 0.00 38.10 3.36
1140 3306 0.537143 ACGCAAAGGCTTGATGTGGA 60.537 50.000 14.90 0.00 38.10 4.02
1141 3307 0.109597 GACGCAAAGGCTTGATGTGG 60.110 55.000 14.90 4.63 38.10 4.17
1146 3312 2.250939 CCACGACGCAAAGGCTTGA 61.251 57.895 0.00 0.00 38.10 3.02
1147 3313 1.781025 TTCCACGACGCAAAGGCTTG 61.781 55.000 0.00 0.00 38.10 4.01
1148 3314 1.525077 TTCCACGACGCAAAGGCTT 60.525 52.632 0.00 0.00 38.10 4.35
1150 3316 2.251371 GTTCCACGACGCAAAGGC 59.749 61.111 0.00 0.00 0.00 4.35
1151 3317 1.952133 TCGTTCCACGACGCAAAGG 60.952 57.895 0.00 0.00 46.73 3.11
1160 3326 3.403057 CGGTGCTGTCGTTCCACG 61.403 66.667 0.00 0.00 44.19 4.94
1163 3329 1.282930 GAAGTCGGTGCTGTCGTTCC 61.283 60.000 0.00 0.00 0.00 3.62
1164 3330 0.318784 AGAAGTCGGTGCTGTCGTTC 60.319 55.000 0.00 0.00 0.00 3.95
1165 3331 0.597637 CAGAAGTCGGTGCTGTCGTT 60.598 55.000 0.00 0.00 0.00 3.85
1166 3332 1.007271 CAGAAGTCGGTGCTGTCGT 60.007 57.895 0.00 0.00 0.00 4.34
1167 3333 1.007271 ACAGAAGTCGGTGCTGTCG 60.007 57.895 0.00 0.00 38.41 4.35
1168 3334 0.032130 TCACAGAAGTCGGTGCTGTC 59.968 55.000 6.70 0.00 40.63 3.51
1169 3335 0.249489 GTCACAGAAGTCGGTGCTGT 60.249 55.000 6.70 0.00 43.16 4.40
1170 3336 0.032678 AGTCACAGAAGTCGGTGCTG 59.967 55.000 6.70 0.00 40.93 4.41
1172 3338 0.946221 CCAGTCACAGAAGTCGGTGC 60.946 60.000 6.70 3.17 40.93 5.01
1173 3339 0.319900 CCCAGTCACAGAAGTCGGTG 60.320 60.000 5.35 5.35 42.18 4.94
1174 3340 1.472662 CCCCAGTCACAGAAGTCGGT 61.473 60.000 0.00 0.00 0.00 4.69
1175 3341 1.185618 TCCCCAGTCACAGAAGTCGG 61.186 60.000 0.00 0.00 0.00 4.79
1176 3342 0.244994 CTCCCCAGTCACAGAAGTCG 59.755 60.000 0.00 0.00 0.00 4.18
1177 3343 0.610687 CCTCCCCAGTCACAGAAGTC 59.389 60.000 0.00 0.00 0.00 3.01
1178 3344 0.104934 ACCTCCCCAGTCACAGAAGT 60.105 55.000 0.00 0.00 0.00 3.01
1181 3347 0.399949 AACACCTCCCCAGTCACAGA 60.400 55.000 0.00 0.00 0.00 3.41
1182 3348 0.035458 GAACACCTCCCCAGTCACAG 59.965 60.000 0.00 0.00 0.00 3.66
1184 3350 1.004918 CGAACACCTCCCCAGTCAC 60.005 63.158 0.00 0.00 0.00 3.67
1186 3352 2.047179 GCGAACACCTCCCCAGTC 60.047 66.667 0.00 0.00 0.00 3.51
1187 3353 2.526873 AGCGAACACCTCCCCAGT 60.527 61.111 0.00 0.00 0.00 4.00
1188 3354 2.046892 CAGCGAACACCTCCCCAG 60.047 66.667 0.00 0.00 0.00 4.45
1189 3355 4.329545 GCAGCGAACACCTCCCCA 62.330 66.667 0.00 0.00 0.00 4.96
1190 3356 4.329545 TGCAGCGAACACCTCCCC 62.330 66.667 0.00 0.00 0.00 4.81
1191 3357 2.743928 CTGCAGCGAACACCTCCC 60.744 66.667 0.00 0.00 0.00 4.30
1192 3358 2.527951 ATCCTGCAGCGAACACCTCC 62.528 60.000 8.66 0.00 0.00 4.30
1193 3359 1.078848 ATCCTGCAGCGAACACCTC 60.079 57.895 8.66 0.00 0.00 3.85
1194 3360 1.376424 CATCCTGCAGCGAACACCT 60.376 57.895 8.66 0.00 0.00 4.00
1195 3361 0.955428 TTCATCCTGCAGCGAACACC 60.955 55.000 8.66 0.00 0.00 4.16
1209 3977 3.109619 GACTCGACGTGGATTCTTCATC 58.890 50.000 10.09 0.00 0.00 2.92
1210 3978 2.492088 TGACTCGACGTGGATTCTTCAT 59.508 45.455 16.63 0.00 0.00 2.57
1211 3979 1.883926 TGACTCGACGTGGATTCTTCA 59.116 47.619 16.63 7.94 0.00 3.02
1212 3980 2.095161 AGTGACTCGACGTGGATTCTTC 60.095 50.000 16.63 10.79 0.00 2.87
1214 3982 1.535833 AGTGACTCGACGTGGATTCT 58.464 50.000 16.63 4.43 0.00 2.40
1215 3983 2.095161 AGAAGTGACTCGACGTGGATTC 60.095 50.000 10.38 10.38 0.00 2.52
1216 3984 1.887198 AGAAGTGACTCGACGTGGATT 59.113 47.619 0.00 0.00 0.00 3.01
1217 3985 1.469308 GAGAAGTGACTCGACGTGGAT 59.531 52.381 0.00 0.00 0.00 3.41
1218 3986 0.873054 GAGAAGTGACTCGACGTGGA 59.127 55.000 0.00 0.00 0.00 4.02
1219 3987 0.875728 AGAGAAGTGACTCGACGTGG 59.124 55.000 0.00 0.00 41.25 4.94
1220 3988 2.031944 TCAAGAGAAGTGACTCGACGTG 60.032 50.000 0.00 0.00 41.25 4.49
1223 3991 2.554893 AGGTCAAGAGAAGTGACTCGAC 59.445 50.000 4.70 0.00 44.02 4.20
1225 3993 3.570559 GAAGGTCAAGAGAAGTGACTCG 58.429 50.000 4.70 0.00 44.02 4.18
1228 3996 2.036089 ACGGAAGGTCAAGAGAAGTGAC 59.964 50.000 0.00 0.00 43.87 3.67
1229 3997 2.317040 ACGGAAGGTCAAGAGAAGTGA 58.683 47.619 0.00 0.00 0.00 3.41
1230 3998 2.821991 ACGGAAGGTCAAGAGAAGTG 57.178 50.000 0.00 0.00 0.00 3.16
1232 4000 3.936372 TGTACGGAAGGTCAAGAGAAG 57.064 47.619 0.00 0.00 0.00 2.85
1233 4001 4.502604 CCTTTGTACGGAAGGTCAAGAGAA 60.503 45.833 16.02 0.00 39.05 2.87
1234 4002 3.006537 CCTTTGTACGGAAGGTCAAGAGA 59.993 47.826 16.02 0.00 39.05 3.10
1235 4003 3.326747 CCTTTGTACGGAAGGTCAAGAG 58.673 50.000 16.02 0.00 39.05 2.85
1244 4012 2.211806 CGACCAAACCTTTGTACGGAA 58.788 47.619 0.00 0.00 36.45 4.30
1245 4013 1.540797 CCGACCAAACCTTTGTACGGA 60.541 52.381 19.19 0.00 46.91 4.69
1247 4015 0.869730 CCCGACCAAACCTTTGTACG 59.130 55.000 0.00 2.96 36.45 3.67
1249 4017 0.183014 TGCCCGACCAAACCTTTGTA 59.817 50.000 0.00 0.00 36.45 2.41
1250 4018 0.684805 TTGCCCGACCAAACCTTTGT 60.685 50.000 0.00 0.00 36.45 2.83
1251 4019 0.461961 TTTGCCCGACCAAACCTTTG 59.538 50.000 0.00 0.00 37.90 2.77
1252 4020 1.343142 GATTTGCCCGACCAAACCTTT 59.657 47.619 3.16 0.00 37.51 3.11
1253 4021 0.966179 GATTTGCCCGACCAAACCTT 59.034 50.000 3.16 0.00 37.51 3.50
1255 4023 0.526211 GAGATTTGCCCGACCAAACC 59.474 55.000 3.16 0.00 37.51 3.27
1257 4025 1.613255 GGAGAGATTTGCCCGACCAAA 60.613 52.381 3.51 3.51 38.87 3.28
1259 4027 1.602237 GGAGAGATTTGCCCGACCA 59.398 57.895 0.00 0.00 0.00 4.02
1260 4028 1.521681 CGGAGAGATTTGCCCGACC 60.522 63.158 0.00 0.00 44.29 4.79
1261 4029 0.806492 GACGGAGAGATTTGCCCGAC 60.806 60.000 6.66 0.00 44.29 4.79
1262 4030 1.515954 GACGGAGAGATTTGCCCGA 59.484 57.895 6.66 0.00 44.29 5.14
1263 4031 1.878522 CGACGGAGAGATTTGCCCG 60.879 63.158 0.00 0.00 46.65 6.13
1264 4032 2.174319 GCGACGGAGAGATTTGCCC 61.174 63.158 0.00 0.00 0.00 5.36
1265 4033 1.148759 GAGCGACGGAGAGATTTGCC 61.149 60.000 0.00 0.00 0.00 4.52
1266 4034 1.475441 CGAGCGACGGAGAGATTTGC 61.475 60.000 0.00 0.00 38.46 3.68
1267 4035 2.571528 CGAGCGACGGAGAGATTTG 58.428 57.895 0.00 0.00 38.46 2.32
1277 4045 1.515736 GTTAGGTTCCCGAGCGACG 60.516 63.158 0.00 0.00 42.18 5.12
1278 4046 0.175073 ATGTTAGGTTCCCGAGCGAC 59.825 55.000 0.00 0.00 0.00 5.19
1279 4047 0.899720 AATGTTAGGTTCCCGAGCGA 59.100 50.000 0.00 0.00 0.00 4.93
1281 4049 1.209747 AGGAATGTTAGGTTCCCGAGC 59.790 52.381 1.50 0.00 45.00 5.03
1282 4050 2.500098 TCAGGAATGTTAGGTTCCCGAG 59.500 50.000 1.50 0.00 45.00 4.63
1283 4051 2.542550 TCAGGAATGTTAGGTTCCCGA 58.457 47.619 1.50 0.00 45.00 5.14
1285 4053 7.290813 AGATATTTCAGGAATGTTAGGTTCCC 58.709 38.462 1.50 0.00 45.00 3.97
1287 4055 9.178758 ACAAGATATTTCAGGAATGTTAGGTTC 57.821 33.333 0.00 0.00 0.00 3.62
1288 4056 9.178758 GACAAGATATTTCAGGAATGTTAGGTT 57.821 33.333 0.00 0.00 0.00 3.50
1289 4057 7.775561 GGACAAGATATTTCAGGAATGTTAGGT 59.224 37.037 0.00 0.00 0.00 3.08
1291 4059 8.834465 CAGGACAAGATATTTCAGGAATGTTAG 58.166 37.037 0.00 0.00 0.00 2.34
1293 4061 7.177878 ACAGGACAAGATATTTCAGGAATGTT 58.822 34.615 0.00 0.00 0.00 2.71
1294 4062 6.725364 ACAGGACAAGATATTTCAGGAATGT 58.275 36.000 0.00 0.00 0.00 2.71
1295 4063 6.018425 CGACAGGACAAGATATTTCAGGAATG 60.018 42.308 0.00 0.00 0.00 2.67
1296 4064 6.051717 CGACAGGACAAGATATTTCAGGAAT 58.948 40.000 0.00 0.00 0.00 3.01
1297 4065 5.419542 CGACAGGACAAGATATTTCAGGAA 58.580 41.667 0.00 0.00 0.00 3.36
1299 4067 4.122776 CCGACAGGACAAGATATTTCAGG 58.877 47.826 0.00 0.00 41.02 3.86
1300 4068 5.011090 TCCGACAGGACAAGATATTTCAG 57.989 43.478 0.00 0.00 42.75 3.02
1320 4088 3.723348 GCGGTGAAGCGGTTGTCC 61.723 66.667 3.70 5.95 0.00 4.02
1321 4089 3.723348 GGCGGTGAAGCGGTTGTC 61.723 66.667 3.70 0.00 38.18 3.18
1326 4094 4.514577 ATCTCGGCGGTGAAGCGG 62.515 66.667 7.21 0.00 38.18 5.52
1329 4097 0.528684 GAGGAATCTCGGCGGTGAAG 60.529 60.000 7.21 0.00 0.00 3.02
1337 4281 1.139853 CAAGGGAAGGAGGAATCTCGG 59.860 57.143 0.00 0.00 40.85 4.63
1339 4283 2.171659 GACCAAGGGAAGGAGGAATCTC 59.828 54.545 0.00 0.00 39.25 2.75
1341 4285 1.916181 TGACCAAGGGAAGGAGGAATC 59.084 52.381 0.00 0.00 0.00 2.52
1343 4287 1.916181 GATGACCAAGGGAAGGAGGAA 59.084 52.381 0.00 0.00 0.00 3.36
1344 4288 1.081174 AGATGACCAAGGGAAGGAGGA 59.919 52.381 0.00 0.00 0.00 3.71
1349 4293 2.622436 GACGAAGATGACCAAGGGAAG 58.378 52.381 0.00 0.00 0.00 3.46
1353 4297 1.084370 GGCGACGAAGATGACCAAGG 61.084 60.000 0.00 0.00 0.00 3.61
1354 4298 0.108615 AGGCGACGAAGATGACCAAG 60.109 55.000 0.00 0.00 0.00 3.61
1355 4299 0.108804 GAGGCGACGAAGATGACCAA 60.109 55.000 0.00 0.00 0.00 3.67
1360 4304 2.278857 CCGGAGGCGACGAAGATG 60.279 66.667 0.00 0.00 46.14 2.90
1373 4317 2.224967 GGGCTAAGGTAGAGATACCGGA 60.225 54.545 9.46 0.00 44.64 5.14
1375 4319 1.811359 CGGGCTAAGGTAGAGATACCG 59.189 57.143 0.00 0.00 44.64 4.02
1376 4320 2.819019 GTCGGGCTAAGGTAGAGATACC 59.181 54.545 0.00 0.00 40.38 2.73
1378 4322 2.444388 TGGTCGGGCTAAGGTAGAGATA 59.556 50.000 0.00 0.00 0.00 1.98
1379 4323 1.217183 TGGTCGGGCTAAGGTAGAGAT 59.783 52.381 0.00 0.00 0.00 2.75
1381 4325 1.481871 TTGGTCGGGCTAAGGTAGAG 58.518 55.000 0.00 0.00 0.00 2.43
1382 4326 1.551883 GTTTGGTCGGGCTAAGGTAGA 59.448 52.381 0.00 0.00 0.00 2.59
1383 4327 1.406477 GGTTTGGTCGGGCTAAGGTAG 60.406 57.143 0.00 0.00 0.00 3.18
1384 4328 0.614812 GGTTTGGTCGGGCTAAGGTA 59.385 55.000 0.00 0.00 0.00 3.08
1386 4330 0.037734 AAGGTTTGGTCGGGCTAAGG 59.962 55.000 0.00 0.00 0.00 2.69
1387 4331 1.165270 CAAGGTTTGGTCGGGCTAAG 58.835 55.000 0.00 0.00 0.00 2.18
1388 4332 0.766131 TCAAGGTTTGGTCGGGCTAA 59.234 50.000 0.00 0.00 0.00 3.09
1389 4333 0.988832 ATCAAGGTTTGGTCGGGCTA 59.011 50.000 0.00 0.00 0.00 3.93
1391 4335 0.893727 ACATCAAGGTTTGGTCGGGC 60.894 55.000 0.00 0.00 0.00 6.13
1393 4337 1.604604 ACACATCAAGGTTTGGTCGG 58.395 50.000 0.00 0.00 0.00 4.79
1395 4339 5.528870 CCTTAAACACATCAAGGTTTGGTC 58.471 41.667 0.00 0.00 37.73 4.02
1402 4346 4.766891 ACATCCACCTTAAACACATCAAGG 59.233 41.667 0.00 0.00 43.73 3.61
1403 4347 5.964958 ACATCCACCTTAAACACATCAAG 57.035 39.130 0.00 0.00 0.00 3.02
1406 4350 4.331717 CGGTACATCCACCTTAAACACATC 59.668 45.833 0.00 0.00 36.35 3.06
1407 4351 4.020039 TCGGTACATCCACCTTAAACACAT 60.020 41.667 0.00 0.00 36.35 3.21
1408 4352 3.324268 TCGGTACATCCACCTTAAACACA 59.676 43.478 0.00 0.00 36.35 3.72
1410 4354 4.571919 CTTCGGTACATCCACCTTAAACA 58.428 43.478 0.00 0.00 36.35 2.83
1411 4355 3.373130 GCTTCGGTACATCCACCTTAAAC 59.627 47.826 0.00 0.00 36.35 2.01
1412 4356 3.008157 TGCTTCGGTACATCCACCTTAAA 59.992 43.478 0.00 0.00 36.35 1.52
1414 4358 2.167693 CTGCTTCGGTACATCCACCTTA 59.832 50.000 0.00 0.00 36.35 2.69
1415 4359 0.981183 TGCTTCGGTACATCCACCTT 59.019 50.000 0.00 0.00 36.35 3.50
1416 4360 0.537188 CTGCTTCGGTACATCCACCT 59.463 55.000 0.00 0.00 36.35 4.00
1417 4361 0.535335 TCTGCTTCGGTACATCCACC 59.465 55.000 0.00 0.00 35.57 4.61
1419 4363 1.899814 ACTTCTGCTTCGGTACATCCA 59.100 47.619 0.00 0.00 35.57 3.41
1420 4364 2.094182 TCACTTCTGCTTCGGTACATCC 60.094 50.000 0.00 0.00 0.00 3.51
1421 4365 2.924290 GTCACTTCTGCTTCGGTACATC 59.076 50.000 0.00 0.00 0.00 3.06
1422 4366 2.353803 GGTCACTTCTGCTTCGGTACAT 60.354 50.000 0.00 0.00 0.00 2.29
1423 4367 1.000506 GGTCACTTCTGCTTCGGTACA 59.999 52.381 0.00 0.00 0.00 2.90
1424 4368 1.272769 AGGTCACTTCTGCTTCGGTAC 59.727 52.381 0.00 0.00 0.00 3.34
1425 4369 1.629043 AGGTCACTTCTGCTTCGGTA 58.371 50.000 0.00 0.00 0.00 4.02
1426 4370 0.759346 AAGGTCACTTCTGCTTCGGT 59.241 50.000 0.00 0.00 28.54 4.69
1427 4371 2.028930 ACTAAGGTCACTTCTGCTTCGG 60.029 50.000 0.00 0.00 38.14 4.30
1428 4372 3.305398 ACTAAGGTCACTTCTGCTTCG 57.695 47.619 0.00 0.00 38.14 3.79
1429 4373 7.817962 TGTTATTACTAAGGTCACTTCTGCTTC 59.182 37.037 0.00 0.00 38.14 3.86
1430 4374 7.603024 GTGTTATTACTAAGGTCACTTCTGCTT 59.397 37.037 0.00 0.00 38.14 3.91
1432 4376 6.872020 TGTGTTATTACTAAGGTCACTTCTGC 59.128 38.462 0.00 0.00 38.14 4.26
1433 4377 8.088981 AGTGTGTTATTACTAAGGTCACTTCTG 58.911 37.037 0.00 0.00 38.14 3.02
1434 4378 8.088981 CAGTGTGTTATTACTAAGGTCACTTCT 58.911 37.037 0.00 0.00 38.14 2.85
1436 4380 6.649557 GCAGTGTGTTATTACTAAGGTCACTT 59.350 38.462 0.00 0.00 40.74 3.16
1437 4381 6.164176 GCAGTGTGTTATTACTAAGGTCACT 58.836 40.000 0.00 0.00 34.62 3.41
1438 4382 5.929992 TGCAGTGTGTTATTACTAAGGTCAC 59.070 40.000 0.00 0.00 0.00 3.67
1439 4383 6.104146 TGCAGTGTGTTATTACTAAGGTCA 57.896 37.500 0.00 0.00 0.00 4.02
1440 4384 6.092259 CCTTGCAGTGTGTTATTACTAAGGTC 59.908 42.308 0.00 0.00 32.07 3.85
1445 4389 5.730550 CCTCCTTGCAGTGTGTTATTACTA 58.269 41.667 0.00 0.00 0.00 1.82
1448 4392 3.244735 TGCCTCCTTGCAGTGTGTTATTA 60.245 43.478 0.00 0.00 36.04 0.98
1466 4500 0.036765 TCGCAAAACTCGGTATGCCT 60.037 50.000 0.00 0.00 35.41 4.75
1467 4501 0.800012 TTCGCAAAACTCGGTATGCC 59.200 50.000 0.00 0.00 35.41 4.40
1469 4503 4.078363 ACAATTCGCAAAACTCGGTATG 57.922 40.909 0.00 0.00 0.00 2.39
1475 4509 3.964909 ACTGGAACAATTCGCAAAACTC 58.035 40.909 0.00 0.00 38.70 3.01
1484 4518 4.899502 TCTCCTCAAGACTGGAACAATTC 58.100 43.478 0.00 0.00 38.70 2.17
1487 4521 5.047021 CAGTATCTCCTCAAGACTGGAACAA 60.047 44.000 0.00 0.00 36.65 2.83
1493 4527 3.698539 TGAGCAGTATCTCCTCAAGACTG 59.301 47.826 0.00 0.00 36.65 3.51
1495 4529 4.429108 GTTGAGCAGTATCTCCTCAAGAC 58.571 47.826 3.73 0.00 43.79 3.01
1499 4533 1.751351 CCGTTGAGCAGTATCTCCTCA 59.249 52.381 0.00 0.00 34.07 3.86
1500 4534 1.537135 GCCGTTGAGCAGTATCTCCTC 60.537 57.143 0.00 0.00 32.22 3.71
1504 4538 2.698855 ATTGCCGTTGAGCAGTATCT 57.301 45.000 0.00 0.00 45.13 1.98
1505 4539 3.458189 ACTATTGCCGTTGAGCAGTATC 58.542 45.455 0.00 0.00 45.13 2.24
1506 4540 3.543680 ACTATTGCCGTTGAGCAGTAT 57.456 42.857 0.00 0.00 45.13 2.12
1509 4543 3.485877 GCTAAACTATTGCCGTTGAGCAG 60.486 47.826 7.25 0.00 44.64 4.24
1510 4544 2.418628 GCTAAACTATTGCCGTTGAGCA 59.581 45.455 7.25 0.00 44.64 4.26
1514 4548 2.097466 CCCAGCTAAACTATTGCCGTTG 59.903 50.000 0.00 0.00 0.00 4.10
1515 4549 2.026636 TCCCAGCTAAACTATTGCCGTT 60.027 45.455 0.00 0.00 0.00 4.44
1517 4551 2.325583 TCCCAGCTAAACTATTGCCG 57.674 50.000 0.00 0.00 0.00 5.69
1547 4581 1.564348 TGAAGGTTAGGAGGCCAATCC 59.436 52.381 5.01 3.66 39.89 3.01
1550 4584 1.742308 ACTGAAGGTTAGGAGGCCAA 58.258 50.000 5.01 0.00 0.00 4.52
1552 4586 2.185387 TGTACTGAAGGTTAGGAGGCC 58.815 52.381 0.00 0.00 0.00 5.19
1560 4594 4.327680 GAAAGGCTCATGTACTGAAGGTT 58.672 43.478 0.00 0.00 32.14 3.50
1583 4617 4.207165 TGGTTCCAGCAAGATTATTAGCC 58.793 43.478 0.00 0.00 0.00 3.93
1585 4619 5.474876 GGGATGGTTCCAGCAAGATTATTAG 59.525 44.000 9.30 0.00 44.60 1.73
1589 4623 2.852449 AGGGATGGTTCCAGCAAGATTA 59.148 45.455 9.30 0.00 44.60 1.75
1595 4629 2.356278 GCAGGGATGGTTCCAGCA 59.644 61.111 9.30 0.00 44.60 4.41
1596 4630 2.440980 GGCAGGGATGGTTCCAGC 60.441 66.667 0.00 0.00 44.60 4.85
1625 4659 6.942005 TCCTGAAATCTTTAAGCATTGTGAGA 59.058 34.615 0.00 0.00 0.00 3.27
1626 4660 7.149569 TCCTGAAATCTTTAAGCATTGTGAG 57.850 36.000 0.00 0.00 0.00 3.51
1632 4666 7.968014 AAAGGATCCTGAAATCTTTAAGCAT 57.032 32.000 17.02 0.00 0.00 3.79
1637 4671 9.581289 TTGTTGTAAAGGATCCTGAAATCTTTA 57.419 29.630 17.02 5.33 0.00 1.85
1640 4674 7.461749 TCTTGTTGTAAAGGATCCTGAAATCT 58.538 34.615 17.02 0.00 0.00 2.40
1641 4675 7.687941 TCTTGTTGTAAAGGATCCTGAAATC 57.312 36.000 17.02 5.65 0.00 2.17
1643 4677 6.371548 CGATCTTGTTGTAAAGGATCCTGAAA 59.628 38.462 17.02 4.81 0.00 2.69
1648 4682 4.811557 CCTCGATCTTGTTGTAAAGGATCC 59.188 45.833 2.48 2.48 0.00 3.36
1649 4683 4.811557 CCCTCGATCTTGTTGTAAAGGATC 59.188 45.833 0.00 0.00 0.00 3.36
1650 4684 4.225267 ACCCTCGATCTTGTTGTAAAGGAT 59.775 41.667 0.00 0.00 0.00 3.24
1652 4686 3.684788 CACCCTCGATCTTGTTGTAAAGG 59.315 47.826 0.00 0.00 0.00 3.11
1653 4687 4.389077 GTCACCCTCGATCTTGTTGTAAAG 59.611 45.833 0.00 0.00 0.00 1.85
1654 4688 4.202274 TGTCACCCTCGATCTTGTTGTAAA 60.202 41.667 0.00 0.00 0.00 2.01
1655 4689 3.322541 TGTCACCCTCGATCTTGTTGTAA 59.677 43.478 0.00 0.00 0.00 2.41
1657 4691 1.691976 TGTCACCCTCGATCTTGTTGT 59.308 47.619 0.00 0.00 0.00 3.32
1658 4692 2.455674 TGTCACCCTCGATCTTGTTG 57.544 50.000 0.00 0.00 0.00 3.33
1661 4695 2.543861 CGGTATGTCACCCTCGATCTTG 60.544 54.545 0.00 0.00 45.52 3.02
1664 4698 0.314302 CCGGTATGTCACCCTCGATC 59.686 60.000 0.00 0.00 45.52 3.69
1667 4701 0.032130 CATCCGGTATGTCACCCTCG 59.968 60.000 0.00 0.00 45.52 4.63
1674 4708 2.627945 TGCAAACTCATCCGGTATGTC 58.372 47.619 0.00 0.00 36.89 3.06
1679 4713 1.981256 ACTTTGCAAACTCATCCGGT 58.019 45.000 8.05 0.00 0.00 5.28
1683 4717 6.150140 AGACCATCTAACTTTGCAAACTCATC 59.850 38.462 8.05 0.00 0.00 2.92
1689 4723 3.888323 TGCAGACCATCTAACTTTGCAAA 59.112 39.130 12.14 12.14 37.17 3.68
1701 4735 0.610232 AACAAGCCCTGCAGACCATC 60.610 55.000 17.39 0.00 0.00 3.51
1826 4860 4.159135 GGTAGACTGTTACCGAGATTGGAA 59.841 45.833 0.00 0.00 34.24 3.53
1835 4869 4.081862 TGGAGATTTGGTAGACTGTTACCG 60.082 45.833 11.75 0.00 44.98 4.02
1929 4963 3.414269 TGGCTGATATATCGACACGGTA 58.586 45.455 8.19 0.00 0.00 4.02
1996 5030 7.763528 TGAGCTCTAGATTCAAATGAGAAAGTC 59.236 37.037 16.19 0.00 0.00 3.01
2055 5089 7.622256 GCAATTCGCTAGGCTATACATAAACTG 60.622 40.741 0.00 0.00 37.77 3.16
2075 5109 2.611518 AGTCGTAGCTCAGTGCAATTC 58.388 47.619 0.00 0.00 45.94 2.17
2094 5128 3.191162 TGGTTTCCATGCATCGAGAAAAG 59.809 43.478 14.48 0.00 30.55 2.27
2095 5129 3.153130 TGGTTTCCATGCATCGAGAAAA 58.847 40.909 14.48 0.00 30.55 2.29
2114 5148 4.202050 GCTGGTACATGGCTTTCTAAATGG 60.202 45.833 0.00 0.00 38.20 3.16
2169 5203 6.697641 TTTATTTCCTCCCAAGTAGAGTGT 57.302 37.500 0.00 0.00 0.00 3.55
2170 5204 7.611855 ACAATTTATTTCCTCCCAAGTAGAGTG 59.388 37.037 0.00 0.00 0.00 3.51
2210 5244 2.163613 GGGAAAGTTTTCTATGCCACGG 59.836 50.000 4.75 0.00 37.35 4.94
2211 5245 2.817258 TGGGAAAGTTTTCTATGCCACG 59.183 45.455 4.75 0.00 37.35 4.94
2255 5289 3.172339 TGCCCCAGTAAATTGATTGCTT 58.828 40.909 0.00 0.00 30.84 3.91
2336 5370 7.339466 AGTGACATTGGGATAAATCCTGTAAAC 59.661 37.037 8.85 7.62 46.35 2.01
2355 5389 3.058016 CGAGACAAATTTGGCAGTGACAT 60.058 43.478 25.59 2.93 39.18 3.06
2364 5398 3.270877 CCCCTAGTCGAGACAAATTTGG 58.729 50.000 21.74 4.61 0.00 3.28
2440 5474 3.430779 GCTTGAAGCATTTGGAGGC 57.569 52.632 13.09 0.00 41.89 4.70
2458 5492 6.862944 AACCGTTTTTATCAATGCGTAATG 57.137 33.333 0.00 0.00 0.00 1.90
2463 5497 7.170114 CCAATAAAACCGTTTTTATCAATGCG 58.830 34.615 14.25 0.00 43.98 4.73
2469 5503 8.078959 ACTTTGCCAATAAAACCGTTTTTATC 57.921 30.769 14.25 0.95 43.98 1.75
2478 5512 5.699001 CCTTTGGTACTTTGCCAATAAAACC 59.301 40.000 0.00 0.00 44.44 3.27
2528 5562 8.076178 AGGTTGTTGAAAGATAAGTCAATTTCG 58.924 33.333 0.00 0.00 36.23 3.46
2585 5619 4.920340 TGCAAATATGTAAGTTGTTTGGCG 59.080 37.500 0.00 0.00 32.08 5.69
2633 5667 1.299541 CCAGTGTGTGCGGAATATCC 58.700 55.000 0.00 0.00 0.00 2.59
2642 5676 0.817634 TACAGTTGCCCAGTGTGTGC 60.818 55.000 4.13 0.00 39.59 4.57
2654 5688 4.809426 ACTCGTTCCAAACTTCTACAGTTG 59.191 41.667 0.00 0.00 45.77 3.16
2681 5715 4.821805 CCACTAAAACTGTTCATGTCCAGT 59.178 41.667 12.31 12.31 43.53 4.00
2736 5770 5.479306 TGACAAGTTCAATACTGCTAGGAC 58.521 41.667 0.00 0.00 37.12 3.85
2737 5771 5.738619 TGACAAGTTCAATACTGCTAGGA 57.261 39.130 0.00 0.00 37.12 2.94
2742 5776 6.968904 CCATTGTATGACAAGTTCAATACTGC 59.031 38.462 0.00 0.00 41.94 4.40
2743 5777 6.968904 GCCATTGTATGACAAGTTCAATACTG 59.031 38.462 0.00 0.00 41.94 2.74
2817 5851 9.573133 AAGATGGTTAAATGACAAATCGATTTC 57.427 29.630 20.31 11.30 0.00 2.17
2822 5856 6.968904 CCTCAAGATGGTTAAATGACAAATCG 59.031 38.462 0.00 0.00 0.00 3.34
2861 5895 7.675637 GCAGCTGCATTATTGAAAATTCCTTTC 60.676 37.037 33.36 0.00 41.34 2.62
2870 5904 3.506844 TCACAGCAGCTGCATTATTGAAA 59.493 39.130 38.24 17.81 45.16 2.69
2892 5926 0.929244 CCCTGGTTTCCATGGATCCT 59.071 55.000 26.42 0.00 40.99 3.24
2945 5979 1.412079 AAGGCACAAAAGGACATGCA 58.588 45.000 0.00 0.00 39.92 3.96
2966 6000 9.723601 ATAGATTGCTTCTTCTTATCTGAATCC 57.276 33.333 0.00 0.00 35.79 3.01
2997 6031 4.116238 GCTACTGGAATCACTAGCTTCAC 58.884 47.826 0.00 0.00 34.56 3.18
3024 6060 1.082366 GGCCGCAACAACTAACACG 60.082 57.895 0.00 0.00 0.00 4.49
3031 6067 0.998669 GCATAAATGGCCGCAACAAC 59.001 50.000 0.00 0.00 0.00 3.32
3101 6137 6.457159 TTCTAGGGAAGTTTGGACCAAATA 57.543 37.500 22.24 8.90 35.74 1.40
3142 6178 3.217626 AGAACCCTTCAGTTGCTTTCAG 58.782 45.455 0.00 0.00 0.00 3.02
3144 6180 3.003793 GTGAGAACCCTTCAGTTGCTTTC 59.996 47.826 0.00 0.00 0.00 2.62
3166 6202 4.932200 GCCTCTACCGATCAAATTAGATGG 59.068 45.833 0.00 0.00 0.00 3.51
3171 6207 3.388024 AGCTGCCTCTACCGATCAAATTA 59.612 43.478 0.00 0.00 0.00 1.40
3177 6213 2.098443 GCTATAGCTGCCTCTACCGATC 59.902 54.545 17.75 0.00 38.21 3.69
3192 6228 7.230510 AGTCTTCCTTGATACACAGAGCTATAG 59.769 40.741 0.00 0.00 0.00 1.31
3198 6234 7.708752 GGAAATAGTCTTCCTTGATACACAGAG 59.291 40.741 0.00 0.00 41.56 3.35
3215 6251 8.660373 CAACAACACTTCTATCTGGAAATAGTC 58.340 37.037 0.00 0.00 32.18 2.59
3224 6260 4.751600 TCACAGCAACAACACTTCTATCTG 59.248 41.667 0.00 0.00 0.00 2.90
3229 6265 3.758554 ACTTTCACAGCAACAACACTTCT 59.241 39.130 0.00 0.00 0.00 2.85
3233 6269 3.764885 AGACTTTCACAGCAACAACAC 57.235 42.857 0.00 0.00 0.00 3.32
3293 6329 7.092079 CACATTCCTTAAAGCATCACATTCAA 58.908 34.615 0.00 0.00 0.00 2.69
3294 6330 6.623486 CACATTCCTTAAAGCATCACATTCA 58.377 36.000 0.00 0.00 0.00 2.57
3301 6337 3.126858 TGTCGCACATTCCTTAAAGCATC 59.873 43.478 0.00 0.00 0.00 3.91
3357 6393 5.668471 TCATTTCCTCTAGAATCAGTGCTG 58.332 41.667 0.00 0.00 33.44 4.41
3384 6420 5.222079 TGAACTCATACACCAGTGCTTTA 57.778 39.130 0.00 0.00 0.00 1.85
3393 6429 1.665679 CGTGGCATGAACTCATACACC 59.334 52.381 0.00 8.79 38.81 4.16
3457 6493 6.759497 AATATAGTTCAAACCTGAAGTGCC 57.241 37.500 5.63 0.00 43.64 5.01
3460 6496 9.003658 CAGTGAAATATAGTTCAAACCTGAAGT 57.996 33.333 19.40 1.21 45.37 3.01
3467 6503 7.377766 TGAGCCAGTGAAATATAGTTCAAAC 57.622 36.000 16.57 6.34 39.18 2.93
3493 6529 2.554142 TCTGATCACAATGCTTAGCCG 58.446 47.619 0.29 0.00 0.00 5.52
3529 6573 2.951475 TTCCTCGGTGGTTGTGGTGC 62.951 60.000 0.00 0.00 37.07 5.01
3535 6579 0.523072 CAATGCTTCCTCGGTGGTTG 59.477 55.000 0.00 0.00 37.07 3.77
3543 6587 4.771590 TCACAATGAACAATGCTTCCTC 57.228 40.909 0.00 0.00 0.00 3.71
3550 6594 6.684686 AGGTTTCAGATCACAATGAACAATG 58.315 36.000 0.00 0.00 35.25 2.82
3613 6657 1.200020 CGTGCAAGTCCAAAATCTCCC 59.800 52.381 0.00 0.00 0.00 4.30
3632 6676 2.100846 CAGGATGGACATGCAACCG 58.899 57.895 6.58 0.00 0.00 4.44
3640 6684 1.419012 GATGAGGATGCAGGATGGACA 59.581 52.381 0.00 0.00 41.42 4.02
3644 6697 3.255888 CCAAATGATGAGGATGCAGGATG 59.744 47.826 0.00 0.00 40.87 3.51
3645 6698 3.117246 ACCAAATGATGAGGATGCAGGAT 60.117 43.478 0.00 0.00 0.00 3.24
3646 6699 2.242965 ACCAAATGATGAGGATGCAGGA 59.757 45.455 0.00 0.00 0.00 3.86
3647 6700 2.361119 CACCAAATGATGAGGATGCAGG 59.639 50.000 0.00 0.00 0.00 4.85
3648 6701 3.066342 GTCACCAAATGATGAGGATGCAG 59.934 47.826 0.00 0.00 40.28 4.41
3649 6702 3.018856 GTCACCAAATGATGAGGATGCA 58.981 45.455 0.00 0.00 40.28 3.96
3650 6703 3.285484 AGTCACCAAATGATGAGGATGC 58.715 45.455 0.00 0.00 40.28 3.91
3651 6704 4.520179 TGAGTCACCAAATGATGAGGATG 58.480 43.478 0.00 0.00 40.28 3.51
3652 6705 4.849813 TGAGTCACCAAATGATGAGGAT 57.150 40.909 0.00 0.00 40.28 3.24
3653 6706 4.042062 AGTTGAGTCACCAAATGATGAGGA 59.958 41.667 0.00 0.00 40.28 3.71
3654 6707 4.330250 AGTTGAGTCACCAAATGATGAGG 58.670 43.478 0.00 0.00 40.28 3.86
3655 6708 5.390251 CGAAGTTGAGTCACCAAATGATGAG 60.390 44.000 0.00 0.00 40.28 2.90
3706 6759 6.959606 ATACCTGGAGCAACATATCCTATT 57.040 37.500 0.00 0.00 36.50 1.73
3758 6811 4.307032 AGCAATCAGGCTAAGGAAGAAA 57.693 40.909 0.00 0.00 43.70 2.52
3762 6815 3.719268 TCAAGCAATCAGGCTAAGGAA 57.281 42.857 0.00 0.00 45.07 3.36
3764 6817 3.084039 TGTTCAAGCAATCAGGCTAAGG 58.916 45.455 0.00 0.00 45.07 2.69
3765 6818 4.157289 ACATGTTCAAGCAATCAGGCTAAG 59.843 41.667 0.00 0.00 45.07 2.18
3769 6822 2.229543 TCACATGTTCAAGCAATCAGGC 59.770 45.455 0.00 0.00 0.00 4.85
3771 6824 6.643360 TCAAATTCACATGTTCAAGCAATCAG 59.357 34.615 0.00 0.00 0.00 2.90
3775 6828 6.339730 AGTTCAAATTCACATGTTCAAGCAA 58.660 32.000 0.00 0.00 0.00 3.91
3776 6829 5.904941 AGTTCAAATTCACATGTTCAAGCA 58.095 33.333 0.00 0.00 0.00 3.91
3778 6831 7.864379 AGCTTAGTTCAAATTCACATGTTCAAG 59.136 33.333 0.00 0.00 0.00 3.02
3780 6833 7.229306 AGAGCTTAGTTCAAATTCACATGTTCA 59.771 33.333 0.00 0.00 0.00 3.18
3782 6835 7.516198 AGAGCTTAGTTCAAATTCACATGTT 57.484 32.000 0.00 0.00 0.00 2.71
3783 6836 7.365741 CAAGAGCTTAGTTCAAATTCACATGT 58.634 34.615 0.00 0.00 0.00 3.21
3812 6869 7.595604 TGCAAATTCTGTATATACCATGCATG 58.404 34.615 20.19 20.19 35.39 4.06
3813 6870 7.094075 CCTGCAAATTCTGTATATACCATGCAT 60.094 37.037 10.38 0.00 39.10 3.96
3818 6875 5.457487 CCCCCTGCAAATTCTGTATATACCA 60.457 44.000 10.38 0.00 0.00 3.25
3819 6876 5.010282 CCCCCTGCAAATTCTGTATATACC 58.990 45.833 10.38 0.00 0.00 2.73
3820 6877 5.473504 CACCCCCTGCAAATTCTGTATATAC 59.526 44.000 5.89 5.89 0.00 1.47
3821 6878 5.457487 CCACCCCCTGCAAATTCTGTATATA 60.457 44.000 0.00 0.00 0.00 0.86
3824 6881 2.624029 CCACCCCCTGCAAATTCTGTAT 60.624 50.000 0.00 0.00 0.00 2.29
3833 6890 1.943730 AACTTGACCACCCCCTGCAA 61.944 55.000 0.00 0.00 0.00 4.08
3856 6913 1.977594 CTGTAAACATCGGCGGTGGC 61.978 60.000 25.56 11.71 38.90 5.01
3859 6916 0.321298 AAGCTGTAAACATCGGCGGT 60.321 50.000 7.21 0.00 41.47 5.68
3861 6918 1.061131 CTGAAGCTGTAAACATCGGCG 59.939 52.381 0.00 0.00 41.47 6.46
3880 6937 6.434340 GTGAATATTTCAAGGAGAACAACCCT 59.566 38.462 0.00 0.00 42.15 4.34
3885 6942 4.941263 CGGGTGAATATTTCAAGGAGAACA 59.059 41.667 0.00 0.00 42.15 3.18
3905 6962 4.778143 CCGTTGGCCTCCTTCGGG 62.778 72.222 3.32 0.00 37.05 5.14
3906 6963 3.031417 ATCCGTTGGCCTCCTTCGG 62.031 63.158 3.32 10.99 39.89 4.30
3926 6983 3.698040 GCTCAATCCATCCTTGAACATGT 59.302 43.478 0.00 0.00 32.53 3.21
3939 6996 3.624410 CGAACTTCATGATGCTCAATCCA 59.376 43.478 8.45 0.00 34.00 3.41
3951 7008 6.727824 AAGTTAATCTCCACGAACTTCATG 57.272 37.500 0.00 0.00 37.53 3.07
3952 7009 6.817140 GGTAAGTTAATCTCCACGAACTTCAT 59.183 38.462 2.35 0.00 40.40 2.57
3953 7010 6.014840 AGGTAAGTTAATCTCCACGAACTTCA 60.015 38.462 2.35 0.00 40.40 3.02
3954 7011 6.310711 CAGGTAAGTTAATCTCCACGAACTTC 59.689 42.308 2.35 0.00 40.40 3.01
3960 7017 5.068234 TGTCAGGTAAGTTAATCTCCACG 57.932 43.478 0.00 0.00 0.00 4.94
3962 7019 6.928348 TCTTGTCAGGTAAGTTAATCTCCA 57.072 37.500 0.00 0.00 0.00 3.86
3963 7020 7.331791 ACATCTTGTCAGGTAAGTTAATCTCC 58.668 38.462 0.00 0.00 0.00 3.71
3969 7026 5.616270 TGCAACATCTTGTCAGGTAAGTTA 58.384 37.500 0.00 0.00 0.00 2.24
3975 7032 2.936919 TCTGCAACATCTTGTCAGGT 57.063 45.000 0.00 0.00 34.69 4.00
3981 7038 7.012989 TCTGGATCAATAATCTGCAACATCTTG 59.987 37.037 0.00 0.00 34.56 3.02
4020 7077 0.035630 CTTCTTGGCAGAGGTCCAGG 60.036 60.000 0.00 0.00 34.66 4.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.