Multiple sequence alignment - TraesCS4D01G105900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G105900 chr4D 100.000 2585 0 0 1 2585 84468131 84465547 0.000000e+00 4774
1 TraesCS4D01G105900 chr4D 93.184 2186 131 9 407 2585 481887026 481889200 0.000000e+00 3195
2 TraesCS4D01G105900 chr7D 93.956 2184 118 8 406 2585 175933381 175931208 0.000000e+00 3290
3 TraesCS4D01G105900 chr2D 93.190 2188 135 7 406 2585 498273320 498275501 0.000000e+00 3203
4 TraesCS4D01G105900 chr3D 93.171 2182 140 8 405 2585 267288555 267290728 0.000000e+00 3195
5 TraesCS4D01G105900 chr2A 93.135 2185 137 11 404 2585 549959908 549957734 0.000000e+00 3192
6 TraesCS4D01G105900 chr7A 93.135 2185 128 11 406 2585 564259977 564262144 0.000000e+00 3184
7 TraesCS4D01G105900 chr6D 93.135 2185 127 11 405 2584 325418870 325416704 0.000000e+00 3182
8 TraesCS4D01G105900 chr5B 92.926 2191 137 12 407 2584 583111631 583109446 0.000000e+00 3171
9 TraesCS4D01G105900 chr1D 92.995 2184 136 8 406 2585 278102468 278100298 0.000000e+00 3169
10 TraesCS4D01G105900 chr4B 88.515 357 19 11 1 352 119566678 119566339 1.850000e-111 412
11 TraesCS4D01G105900 chr4A 89.369 301 24 2 3 303 497436164 497435872 3.140000e-99 372


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G105900 chr4D 84465547 84468131 2584 True 4774 4774 100.000 1 2585 1 chr4D.!!$R1 2584
1 TraesCS4D01G105900 chr4D 481887026 481889200 2174 False 3195 3195 93.184 407 2585 1 chr4D.!!$F1 2178
2 TraesCS4D01G105900 chr7D 175931208 175933381 2173 True 3290 3290 93.956 406 2585 1 chr7D.!!$R1 2179
3 TraesCS4D01G105900 chr2D 498273320 498275501 2181 False 3203 3203 93.190 406 2585 1 chr2D.!!$F1 2179
4 TraesCS4D01G105900 chr3D 267288555 267290728 2173 False 3195 3195 93.171 405 2585 1 chr3D.!!$F1 2180
5 TraesCS4D01G105900 chr2A 549957734 549959908 2174 True 3192 3192 93.135 404 2585 1 chr2A.!!$R1 2181
6 TraesCS4D01G105900 chr7A 564259977 564262144 2167 False 3184 3184 93.135 406 2585 1 chr7A.!!$F1 2179
7 TraesCS4D01G105900 chr6D 325416704 325418870 2166 True 3182 3182 93.135 405 2584 1 chr6D.!!$R1 2179
8 TraesCS4D01G105900 chr5B 583109446 583111631 2185 True 3171 3171 92.926 407 2584 1 chr5B.!!$R1 2177
9 TraesCS4D01G105900 chr1D 278100298 278102468 2170 True 3169 3169 92.995 406 2585 1 chr1D.!!$R1 2179

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
347 348 0.109597 GGAAGCACGCCAACATTCAG 60.11 55.0 0.0 0.0 0.0 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1662 1694 0.178873 AGTGCTTCCTCCCCCTGTAA 60.179 55.0 0.0 0.0 0.0 2.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.133003 ACATACTACATGGACCAGTCTGC 59.867 47.826 0.00 0.00 0.00 4.26
24 25 1.944177 ACTACATGGACCAGTCTGCT 58.056 50.000 0.00 0.00 0.00 4.24
25 26 2.260822 ACTACATGGACCAGTCTGCTT 58.739 47.619 0.00 0.00 0.00 3.91
26 27 2.027745 ACTACATGGACCAGTCTGCTTG 60.028 50.000 0.00 0.00 0.00 4.01
27 28 0.767375 ACATGGACCAGTCTGCTTGT 59.233 50.000 0.00 0.00 0.00 3.16
28 29 1.977854 ACATGGACCAGTCTGCTTGTA 59.022 47.619 0.00 0.00 0.00 2.41
29 30 2.289694 ACATGGACCAGTCTGCTTGTAC 60.290 50.000 0.00 0.00 0.00 2.90
30 31 1.419381 TGGACCAGTCTGCTTGTACA 58.581 50.000 0.00 0.00 29.74 2.90
31 32 1.765904 TGGACCAGTCTGCTTGTACAA 59.234 47.619 8.28 8.28 29.35 2.41
32 33 2.224281 TGGACCAGTCTGCTTGTACAAG 60.224 50.000 27.85 27.85 41.24 3.16
33 34 2.417719 GACCAGTCTGCTTGTACAAGG 58.582 52.381 31.42 19.02 38.80 3.61
34 35 1.768870 ACCAGTCTGCTTGTACAAGGT 59.231 47.619 31.42 19.61 38.80 3.50
35 36 2.146342 CCAGTCTGCTTGTACAAGGTG 58.854 52.381 31.42 12.57 38.80 4.00
36 37 2.146342 CAGTCTGCTTGTACAAGGTGG 58.854 52.381 31.42 12.23 38.80 4.61
37 38 1.768870 AGTCTGCTTGTACAAGGTGGT 59.231 47.619 31.42 7.40 38.80 4.16
38 39 2.143925 GTCTGCTTGTACAAGGTGGTC 58.856 52.381 31.42 17.67 38.80 4.02
39 40 1.765904 TCTGCTTGTACAAGGTGGTCA 59.234 47.619 31.42 20.70 38.80 4.02
40 41 2.171659 TCTGCTTGTACAAGGTGGTCAA 59.828 45.455 31.42 12.07 38.80 3.18
41 42 3.149196 CTGCTTGTACAAGGTGGTCAAT 58.851 45.455 31.42 0.00 38.80 2.57
42 43 3.146066 TGCTTGTACAAGGTGGTCAATC 58.854 45.455 31.42 15.17 38.80 2.67
43 44 3.146066 GCTTGTACAAGGTGGTCAATCA 58.854 45.455 31.42 0.00 38.80 2.57
44 45 3.058224 GCTTGTACAAGGTGGTCAATCAC 60.058 47.826 31.42 10.83 38.80 3.06
45 46 2.761559 TGTACAAGGTGGTCAATCACG 58.238 47.619 0.00 0.00 38.46 4.35
46 47 2.365941 TGTACAAGGTGGTCAATCACGA 59.634 45.455 0.00 0.00 38.46 4.35
47 48 2.859165 ACAAGGTGGTCAATCACGAT 57.141 45.000 0.00 0.00 38.46 3.73
48 49 2.426522 ACAAGGTGGTCAATCACGATG 58.573 47.619 0.00 0.00 38.46 3.84
49 50 2.224523 ACAAGGTGGTCAATCACGATGT 60.225 45.455 0.00 0.00 38.46 3.06
50 51 2.099141 AGGTGGTCAATCACGATGTG 57.901 50.000 0.00 0.00 38.46 3.21
51 52 1.623311 AGGTGGTCAATCACGATGTGA 59.377 47.619 1.65 1.65 46.90 3.58
79 80 4.398549 TTTGCCTTGTTTCGTCTAATCG 57.601 40.909 0.00 0.00 0.00 3.34
80 81 1.730064 TGCCTTGTTTCGTCTAATCGC 59.270 47.619 0.00 0.00 0.00 4.58
81 82 1.062148 GCCTTGTTTCGTCTAATCGCC 59.938 52.381 0.00 0.00 0.00 5.54
82 83 2.618053 CCTTGTTTCGTCTAATCGCCT 58.382 47.619 0.00 0.00 0.00 5.52
83 84 3.000727 CCTTGTTTCGTCTAATCGCCTT 58.999 45.455 0.00 0.00 0.00 4.35
84 85 4.178540 CCTTGTTTCGTCTAATCGCCTTA 58.821 43.478 0.00 0.00 0.00 2.69
85 86 4.809426 CCTTGTTTCGTCTAATCGCCTTAT 59.191 41.667 0.00 0.00 0.00 1.73
86 87 5.293569 CCTTGTTTCGTCTAATCGCCTTATT 59.706 40.000 0.00 0.00 0.00 1.40
87 88 5.961395 TGTTTCGTCTAATCGCCTTATTC 57.039 39.130 0.00 0.00 0.00 1.75
88 89 5.412640 TGTTTCGTCTAATCGCCTTATTCA 58.587 37.500 0.00 0.00 0.00 2.57
89 90 5.870433 TGTTTCGTCTAATCGCCTTATTCAA 59.130 36.000 0.00 0.00 0.00 2.69
90 91 6.035650 TGTTTCGTCTAATCGCCTTATTCAAG 59.964 38.462 0.00 0.00 0.00 3.02
91 92 5.258456 TCGTCTAATCGCCTTATTCAAGT 57.742 39.130 0.00 0.00 0.00 3.16
92 93 5.657474 TCGTCTAATCGCCTTATTCAAGTT 58.343 37.500 0.00 0.00 0.00 2.66
93 94 5.747197 TCGTCTAATCGCCTTATTCAAGTTC 59.253 40.000 0.00 0.00 0.00 3.01
94 95 5.050972 CGTCTAATCGCCTTATTCAAGTTCC 60.051 44.000 0.00 0.00 0.00 3.62
95 96 5.047847 TCTAATCGCCTTATTCAAGTTCCG 58.952 41.667 0.00 0.00 0.00 4.30
96 97 1.365699 TCGCCTTATTCAAGTTCCGC 58.634 50.000 0.00 0.00 0.00 5.54
97 98 1.066430 TCGCCTTATTCAAGTTCCGCT 60.066 47.619 0.00 0.00 0.00 5.52
98 99 1.327764 CGCCTTATTCAAGTTCCGCTC 59.672 52.381 0.00 0.00 0.00 5.03
99 100 2.633488 GCCTTATTCAAGTTCCGCTCT 58.367 47.619 0.00 0.00 0.00 4.09
100 101 2.352960 GCCTTATTCAAGTTCCGCTCTG 59.647 50.000 0.00 0.00 0.00 3.35
101 102 2.939103 CCTTATTCAAGTTCCGCTCTGG 59.061 50.000 0.00 0.00 40.09 3.86
102 103 3.600388 CTTATTCAAGTTCCGCTCTGGT 58.400 45.455 0.00 0.00 39.52 4.00
103 104 2.568623 ATTCAAGTTCCGCTCTGGTT 57.431 45.000 0.00 0.00 39.52 3.67
104 105 3.695830 ATTCAAGTTCCGCTCTGGTTA 57.304 42.857 0.00 0.00 39.52 2.85
105 106 3.695830 TTCAAGTTCCGCTCTGGTTAT 57.304 42.857 0.00 0.00 39.52 1.89
106 107 3.247006 TCAAGTTCCGCTCTGGTTATC 57.753 47.619 0.00 0.00 39.52 1.75
107 108 2.565391 TCAAGTTCCGCTCTGGTTATCA 59.435 45.455 0.00 0.00 39.52 2.15
108 109 3.197766 TCAAGTTCCGCTCTGGTTATCAT 59.802 43.478 0.00 0.00 39.52 2.45
109 110 3.185246 AGTTCCGCTCTGGTTATCATG 57.815 47.619 0.00 0.00 39.52 3.07
110 111 2.501723 AGTTCCGCTCTGGTTATCATGT 59.498 45.455 0.00 0.00 39.52 3.21
111 112 3.055094 AGTTCCGCTCTGGTTATCATGTT 60.055 43.478 0.00 0.00 39.52 2.71
112 113 4.161565 AGTTCCGCTCTGGTTATCATGTTA 59.838 41.667 0.00 0.00 39.52 2.41
113 114 4.955811 TCCGCTCTGGTTATCATGTTAT 57.044 40.909 0.00 0.00 39.52 1.89
114 115 5.290493 TCCGCTCTGGTTATCATGTTATT 57.710 39.130 0.00 0.00 39.52 1.40
115 116 5.680619 TCCGCTCTGGTTATCATGTTATTT 58.319 37.500 0.00 0.00 39.52 1.40
116 117 5.758296 TCCGCTCTGGTTATCATGTTATTTC 59.242 40.000 0.00 0.00 39.52 2.17
117 118 5.049405 CCGCTCTGGTTATCATGTTATTTCC 60.049 44.000 0.00 0.00 0.00 3.13
118 119 5.760253 CGCTCTGGTTATCATGTTATTTCCT 59.240 40.000 0.00 0.00 0.00 3.36
119 120 6.293081 CGCTCTGGTTATCATGTTATTTCCTG 60.293 42.308 0.00 0.00 0.00 3.86
120 121 6.543831 GCTCTGGTTATCATGTTATTTCCTGT 59.456 38.462 0.00 0.00 0.00 4.00
121 122 7.467811 GCTCTGGTTATCATGTTATTTCCTGTG 60.468 40.741 0.00 0.56 0.00 3.66
122 123 6.828273 TCTGGTTATCATGTTATTTCCTGTGG 59.172 38.462 0.00 0.00 0.00 4.17
123 124 6.726379 TGGTTATCATGTTATTTCCTGTGGA 58.274 36.000 0.00 0.00 0.00 4.02
124 125 7.178573 TGGTTATCATGTTATTTCCTGTGGAA 58.821 34.615 0.00 0.00 40.27 3.53
142 143 5.828299 TGGAAACACAAGTTCGATCTTTT 57.172 34.783 6.00 0.00 36.84 2.27
143 144 6.202516 TGGAAACACAAGTTCGATCTTTTT 57.797 33.333 6.00 5.27 36.84 1.94
144 145 7.323049 TGGAAACACAAGTTCGATCTTTTTA 57.677 32.000 6.00 0.00 36.84 1.52
145 146 7.414436 TGGAAACACAAGTTCGATCTTTTTAG 58.586 34.615 6.00 0.00 36.84 1.85
146 147 7.066525 TGGAAACACAAGTTCGATCTTTTTAGT 59.933 33.333 6.00 0.00 36.84 2.24
147 148 7.913821 GGAAACACAAGTTCGATCTTTTTAGTT 59.086 33.333 6.00 6.35 36.84 2.24
148 149 8.836959 AAACACAAGTTCGATCTTTTTAGTTC 57.163 30.769 6.00 0.00 36.84 3.01
149 150 6.956047 ACACAAGTTCGATCTTTTTAGTTCC 58.044 36.000 6.00 0.00 0.00 3.62
150 151 6.540914 ACACAAGTTCGATCTTTTTAGTTCCA 59.459 34.615 6.00 0.00 0.00 3.53
151 152 7.228706 ACACAAGTTCGATCTTTTTAGTTCCAT 59.771 33.333 6.00 0.00 0.00 3.41
152 153 8.076178 CACAAGTTCGATCTTTTTAGTTCCATT 58.924 33.333 6.00 0.00 0.00 3.16
153 154 9.280174 ACAAGTTCGATCTTTTTAGTTCCATTA 57.720 29.630 6.00 0.00 0.00 1.90
154 155 9.760660 CAAGTTCGATCTTTTTAGTTCCATTAG 57.239 33.333 6.00 0.00 0.00 1.73
155 156 9.503399 AAGTTCGATCTTTTTAGTTCCATTAGT 57.497 29.630 2.83 0.00 0.00 2.24
156 157 9.152595 AGTTCGATCTTTTTAGTTCCATTAGTC 57.847 33.333 0.00 0.00 0.00 2.59
157 158 8.932791 GTTCGATCTTTTTAGTTCCATTAGTCA 58.067 33.333 0.00 0.00 0.00 3.41
158 159 9.496873 TTCGATCTTTTTAGTTCCATTAGTCAA 57.503 29.630 0.00 0.00 0.00 3.18
159 160 9.151471 TCGATCTTTTTAGTTCCATTAGTCAAG 57.849 33.333 0.00 0.00 0.00 3.02
160 161 7.905493 CGATCTTTTTAGTTCCATTAGTCAAGC 59.095 37.037 0.00 0.00 0.00 4.01
161 162 8.870075 ATCTTTTTAGTTCCATTAGTCAAGCT 57.130 30.769 0.00 0.00 0.00 3.74
162 163 8.691661 TCTTTTTAGTTCCATTAGTCAAGCTT 57.308 30.769 0.00 0.00 0.00 3.74
163 164 9.131791 TCTTTTTAGTTCCATTAGTCAAGCTTT 57.868 29.630 0.00 0.00 0.00 3.51
167 168 8.732746 TTAGTTCCATTAGTCAAGCTTTATCC 57.267 34.615 0.00 0.00 0.00 2.59
168 169 6.721318 AGTTCCATTAGTCAAGCTTTATCCA 58.279 36.000 0.00 0.00 0.00 3.41
169 170 7.349598 AGTTCCATTAGTCAAGCTTTATCCAT 58.650 34.615 0.00 0.00 0.00 3.41
170 171 7.836183 AGTTCCATTAGTCAAGCTTTATCCATT 59.164 33.333 0.00 0.00 0.00 3.16
171 172 8.470002 GTTCCATTAGTCAAGCTTTATCCATTT 58.530 33.333 0.00 0.00 0.00 2.32
172 173 7.999679 TCCATTAGTCAAGCTTTATCCATTTG 58.000 34.615 0.00 0.00 0.00 2.32
173 174 7.833682 TCCATTAGTCAAGCTTTATCCATTTGA 59.166 33.333 0.00 0.00 0.00 2.69
174 175 8.133627 CCATTAGTCAAGCTTTATCCATTTGAG 58.866 37.037 0.00 0.00 0.00 3.02
175 176 8.896744 CATTAGTCAAGCTTTATCCATTTGAGA 58.103 33.333 0.00 0.00 0.00 3.27
176 177 8.862325 TTAGTCAAGCTTTATCCATTTGAGAA 57.138 30.769 0.00 0.00 0.00 2.87
177 178 7.765695 AGTCAAGCTTTATCCATTTGAGAAA 57.234 32.000 0.00 0.00 33.37 2.52
178 179 8.181904 AGTCAAGCTTTATCCATTTGAGAAAA 57.818 30.769 0.00 0.00 34.00 2.29
179 180 8.810041 AGTCAAGCTTTATCCATTTGAGAAAAT 58.190 29.630 0.00 0.00 34.00 1.82
180 181 9.428097 GTCAAGCTTTATCCATTTGAGAAAATT 57.572 29.630 0.00 0.00 34.00 1.82
181 182 9.426837 TCAAGCTTTATCCATTTGAGAAAATTG 57.573 29.630 0.00 0.00 34.00 2.32
182 183 9.211485 CAAGCTTTATCCATTTGAGAAAATTGT 57.789 29.630 0.00 0.00 34.00 2.71
183 184 9.783081 AAGCTTTATCCATTTGAGAAAATTGTT 57.217 25.926 0.00 0.00 34.00 2.83
192 193 9.357652 CCATTTGAGAAAATTGTTACTACATGG 57.642 33.333 0.00 0.00 33.44 3.66
193 194 9.912634 CATTTGAGAAAATTGTTACTACATGGT 57.087 29.630 0.00 0.00 33.44 3.55
195 196 9.959749 TTTGAGAAAATTGTTACTACATGGTTC 57.040 29.630 0.00 0.00 33.44 3.62
196 197 8.684386 TGAGAAAATTGTTACTACATGGTTCA 57.316 30.769 0.00 0.00 33.44 3.18
197 198 8.564574 TGAGAAAATTGTTACTACATGGTTCAC 58.435 33.333 0.00 0.00 33.44 3.18
198 199 7.882179 AGAAAATTGTTACTACATGGTTCACC 58.118 34.615 0.00 0.00 33.44 4.02
210 211 2.846193 TGGTTCACCAAGCTGACTAAC 58.154 47.619 0.00 0.00 44.35 2.34
211 212 2.171659 TGGTTCACCAAGCTGACTAACA 59.828 45.455 0.00 0.00 44.35 2.41
212 213 3.181445 TGGTTCACCAAGCTGACTAACAT 60.181 43.478 0.00 0.00 44.35 2.71
213 214 4.041075 TGGTTCACCAAGCTGACTAACATA 59.959 41.667 0.00 0.00 44.35 2.29
214 215 5.001232 GGTTCACCAAGCTGACTAACATAA 58.999 41.667 0.00 0.00 35.64 1.90
215 216 5.472137 GGTTCACCAAGCTGACTAACATAAA 59.528 40.000 0.00 0.00 35.64 1.40
216 217 6.348540 GGTTCACCAAGCTGACTAACATAAAG 60.349 42.308 0.00 0.00 35.64 1.85
217 218 5.865085 TCACCAAGCTGACTAACATAAAGT 58.135 37.500 0.00 0.00 0.00 2.66
218 219 6.296026 TCACCAAGCTGACTAACATAAAGTT 58.704 36.000 0.00 0.00 44.27 2.66
219 220 7.446769 TCACCAAGCTGACTAACATAAAGTTA 58.553 34.615 0.00 0.00 41.64 2.24
229 230 4.668138 AACATAAAGTTAGGGGCCTCAA 57.332 40.909 4.79 0.00 39.09 3.02
230 231 3.964411 ACATAAAGTTAGGGGCCTCAAC 58.036 45.455 4.79 7.67 0.00 3.18
231 232 2.773993 TAAAGTTAGGGGCCTCAACG 57.226 50.000 4.79 0.00 0.00 4.10
232 233 0.769247 AAAGTTAGGGGCCTCAACGT 59.231 50.000 4.79 2.75 0.00 3.99
233 234 0.323957 AAGTTAGGGGCCTCAACGTC 59.676 55.000 4.79 0.00 0.00 4.34
234 235 1.078637 GTTAGGGGCCTCAACGTCC 60.079 63.158 4.79 0.00 0.00 4.79
235 236 2.295602 TTAGGGGCCTCAACGTCCC 61.296 63.158 4.79 0.53 39.67 4.46
236 237 3.549433 TAGGGGCCTCAACGTCCCA 62.549 63.158 4.79 0.00 41.85 4.37
237 238 4.410400 GGGGCCTCAACGTCCCAG 62.410 72.222 11.11 0.00 41.85 4.45
238 239 3.319198 GGGCCTCAACGTCCCAGA 61.319 66.667 0.84 0.00 39.82 3.86
239 240 2.670148 GGGCCTCAACGTCCCAGAT 61.670 63.158 0.84 0.00 39.82 2.90
240 241 1.335132 GGGCCTCAACGTCCCAGATA 61.335 60.000 0.84 0.00 39.82 1.98
241 242 0.179081 GGCCTCAACGTCCCAGATAC 60.179 60.000 0.00 0.00 0.00 2.24
242 243 0.535335 GCCTCAACGTCCCAGATACA 59.465 55.000 0.00 0.00 0.00 2.29
243 244 1.139058 GCCTCAACGTCCCAGATACAT 59.861 52.381 0.00 0.00 0.00 2.29
244 245 2.826428 CCTCAACGTCCCAGATACATG 58.174 52.381 0.00 0.00 0.00 3.21
245 246 2.430694 CCTCAACGTCCCAGATACATGA 59.569 50.000 0.00 0.00 0.00 3.07
246 247 3.118775 CCTCAACGTCCCAGATACATGAA 60.119 47.826 0.00 0.00 0.00 2.57
247 248 4.503910 CTCAACGTCCCAGATACATGAAA 58.496 43.478 0.00 0.00 0.00 2.69
248 249 4.900684 TCAACGTCCCAGATACATGAAAA 58.099 39.130 0.00 0.00 0.00 2.29
249 250 5.309638 TCAACGTCCCAGATACATGAAAAA 58.690 37.500 0.00 0.00 0.00 1.94
250 251 5.943416 TCAACGTCCCAGATACATGAAAAAT 59.057 36.000 0.00 0.00 0.00 1.82
251 252 6.093495 TCAACGTCCCAGATACATGAAAAATC 59.907 38.462 0.00 0.00 0.00 2.17
252 253 5.496556 ACGTCCCAGATACATGAAAAATCA 58.503 37.500 0.00 0.00 0.00 2.57
253 254 5.586243 ACGTCCCAGATACATGAAAAATCAG 59.414 40.000 0.00 0.00 0.00 2.90
254 255 5.817296 CGTCCCAGATACATGAAAAATCAGA 59.183 40.000 0.00 0.00 0.00 3.27
255 256 6.484643 CGTCCCAGATACATGAAAAATCAGAT 59.515 38.462 0.00 0.00 0.00 2.90
256 257 7.657354 CGTCCCAGATACATGAAAAATCAGATA 59.343 37.037 0.00 0.00 0.00 1.98
257 258 9.342308 GTCCCAGATACATGAAAAATCAGATAA 57.658 33.333 0.00 0.00 0.00 1.75
258 259 9.919416 TCCCAGATACATGAAAAATCAGATAAA 57.081 29.630 0.00 0.00 0.00 1.40
278 279 9.508642 AGATAAAAGATTATGCTTAGCTAACCC 57.491 33.333 5.60 0.00 31.83 4.11
279 280 9.284968 GATAAAAGATTATGCTTAGCTAACCCA 57.715 33.333 5.60 3.37 31.83 4.51
280 281 9.813826 ATAAAAGATTATGCTTAGCTAACCCAT 57.186 29.630 15.44 15.44 30.49 4.00
281 282 7.516198 AAAGATTATGCTTAGCTAACCCATG 57.484 36.000 18.48 5.53 0.00 3.66
282 283 6.439636 AGATTATGCTTAGCTAACCCATGA 57.560 37.500 18.48 13.57 0.00 3.07
283 284 6.471146 AGATTATGCTTAGCTAACCCATGAG 58.529 40.000 18.48 4.18 0.00 2.90
284 285 2.332063 TGCTTAGCTAACCCATGAGC 57.668 50.000 5.60 3.14 39.08 4.26
285 286 1.134098 TGCTTAGCTAACCCATGAGCC 60.134 52.381 5.60 0.00 39.65 4.70
286 287 1.134098 GCTTAGCTAACCCATGAGCCA 60.134 52.381 0.86 0.00 39.65 4.75
287 288 2.565841 CTTAGCTAACCCATGAGCCAC 58.434 52.381 0.86 0.00 39.65 5.01
288 289 1.879575 TAGCTAACCCATGAGCCACT 58.120 50.000 0.00 0.00 39.65 4.00
289 290 1.879575 AGCTAACCCATGAGCCACTA 58.120 50.000 0.00 0.00 39.65 2.74
290 291 2.412591 AGCTAACCCATGAGCCACTAT 58.587 47.619 0.00 0.00 39.65 2.12
291 292 3.587498 AGCTAACCCATGAGCCACTATA 58.413 45.455 0.00 0.00 39.65 1.31
292 293 4.171234 AGCTAACCCATGAGCCACTATAT 58.829 43.478 0.00 0.00 39.65 0.86
293 294 4.599241 AGCTAACCCATGAGCCACTATATT 59.401 41.667 0.00 0.00 39.65 1.28
294 295 4.697352 GCTAACCCATGAGCCACTATATTG 59.303 45.833 0.00 0.00 32.25 1.90
295 296 3.795688 ACCCATGAGCCACTATATTGG 57.204 47.619 4.75 4.75 39.98 3.16
304 305 2.494059 CCACTATATTGGCCTCAACCG 58.506 52.381 3.32 0.00 35.48 4.44
305 306 2.494059 CACTATATTGGCCTCAACCGG 58.506 52.381 3.32 0.00 35.48 5.28
306 307 2.124411 ACTATATTGGCCTCAACCGGT 58.876 47.619 0.00 0.00 35.48 5.28
307 308 3.070446 CACTATATTGGCCTCAACCGGTA 59.930 47.826 8.00 0.00 35.48 4.02
308 309 3.908103 ACTATATTGGCCTCAACCGGTAT 59.092 43.478 8.00 0.00 35.48 2.73
309 310 3.876309 ATATTGGCCTCAACCGGTATT 57.124 42.857 8.00 0.00 35.48 1.89
310 311 1.762708 ATTGGCCTCAACCGGTATTG 58.237 50.000 8.00 2.98 35.48 1.90
311 312 0.693622 TTGGCCTCAACCGGTATTGA 59.306 50.000 8.00 8.40 37.08 2.57
312 313 0.916086 TGGCCTCAACCGGTATTGAT 59.084 50.000 8.00 0.00 37.93 2.57
313 314 1.134220 TGGCCTCAACCGGTATTGATC 60.134 52.381 8.00 3.89 37.93 2.92
314 315 1.141053 GGCCTCAACCGGTATTGATCT 59.859 52.381 8.00 0.00 37.93 2.75
315 316 2.421529 GGCCTCAACCGGTATTGATCTT 60.422 50.000 8.00 0.00 37.93 2.40
316 317 2.614057 GCCTCAACCGGTATTGATCTTG 59.386 50.000 8.00 0.00 37.93 3.02
317 318 2.614057 CCTCAACCGGTATTGATCTTGC 59.386 50.000 8.00 0.00 37.93 4.01
318 319 2.614057 CTCAACCGGTATTGATCTTGCC 59.386 50.000 8.00 0.00 37.93 4.52
319 320 2.026729 TCAACCGGTATTGATCTTGCCA 60.027 45.455 8.00 0.00 33.62 4.92
320 321 2.951642 CAACCGGTATTGATCTTGCCAT 59.048 45.455 8.00 0.00 0.00 4.40
321 322 2.851195 ACCGGTATTGATCTTGCCATC 58.149 47.619 4.49 0.00 0.00 3.51
322 323 2.172505 ACCGGTATTGATCTTGCCATCA 59.827 45.455 4.49 0.00 0.00 3.07
323 324 3.181440 ACCGGTATTGATCTTGCCATCAT 60.181 43.478 4.49 0.00 32.69 2.45
324 325 3.438087 CCGGTATTGATCTTGCCATCATC 59.562 47.826 0.00 0.00 32.69 2.92
325 326 3.124128 CGGTATTGATCTTGCCATCATCG 59.876 47.826 0.00 0.00 32.69 3.84
326 327 4.318332 GGTATTGATCTTGCCATCATCGA 58.682 43.478 0.00 0.00 32.69 3.59
327 328 4.153117 GGTATTGATCTTGCCATCATCGAC 59.847 45.833 0.00 0.00 32.69 4.20
328 329 1.856802 TGATCTTGCCATCATCGACG 58.143 50.000 0.00 0.00 0.00 5.12
329 330 1.143305 GATCTTGCCATCATCGACGG 58.857 55.000 0.00 0.00 0.00 4.79
330 331 0.752658 ATCTTGCCATCATCGACGGA 59.247 50.000 0.00 0.00 0.00 4.69
331 332 0.534873 TCTTGCCATCATCGACGGAA 59.465 50.000 0.00 0.00 0.00 4.30
332 333 0.933097 CTTGCCATCATCGACGGAAG 59.067 55.000 0.00 0.00 0.00 3.46
333 334 1.089481 TTGCCATCATCGACGGAAGC 61.089 55.000 0.00 0.00 0.00 3.86
334 335 1.521457 GCCATCATCGACGGAAGCA 60.521 57.895 0.00 0.00 0.00 3.91
335 336 1.766143 GCCATCATCGACGGAAGCAC 61.766 60.000 0.00 0.00 0.00 4.40
336 337 1.482621 CCATCATCGACGGAAGCACG 61.483 60.000 0.00 0.00 40.31 5.34
337 338 1.878522 ATCATCGACGGAAGCACGC 60.879 57.895 0.00 0.00 37.37 5.34
338 339 3.554692 CATCGACGGAAGCACGCC 61.555 66.667 0.00 0.00 37.37 5.68
339 340 4.063967 ATCGACGGAAGCACGCCA 62.064 61.111 0.00 0.00 37.37 5.69
340 341 3.583276 ATCGACGGAAGCACGCCAA 62.583 57.895 0.00 0.00 37.37 4.52
341 342 4.072088 CGACGGAAGCACGCCAAC 62.072 66.667 0.00 0.00 37.37 3.77
342 343 2.970324 GACGGAAGCACGCCAACA 60.970 61.111 0.00 0.00 37.37 3.33
343 344 2.281484 ACGGAAGCACGCCAACAT 60.281 55.556 0.00 0.00 37.37 2.71
344 345 1.852067 GACGGAAGCACGCCAACATT 61.852 55.000 0.00 0.00 37.37 2.71
345 346 1.154225 CGGAAGCACGCCAACATTC 60.154 57.895 0.00 0.00 0.00 2.67
346 347 1.851021 CGGAAGCACGCCAACATTCA 61.851 55.000 0.00 0.00 0.00 2.57
347 348 0.109597 GGAAGCACGCCAACATTCAG 60.110 55.000 0.00 0.00 0.00 3.02
348 349 0.874390 GAAGCACGCCAACATTCAGA 59.126 50.000 0.00 0.00 0.00 3.27
349 350 1.266718 GAAGCACGCCAACATTCAGAA 59.733 47.619 0.00 0.00 0.00 3.02
350 351 1.317613 AGCACGCCAACATTCAGAAA 58.682 45.000 0.00 0.00 0.00 2.52
351 352 1.680735 AGCACGCCAACATTCAGAAAA 59.319 42.857 0.00 0.00 0.00 2.29
352 353 2.053627 GCACGCCAACATTCAGAAAAG 58.946 47.619 0.00 0.00 0.00 2.27
353 354 2.664916 CACGCCAACATTCAGAAAAGG 58.335 47.619 0.00 0.00 0.00 3.11
354 355 2.293122 CACGCCAACATTCAGAAAAGGA 59.707 45.455 0.00 0.00 0.00 3.36
355 356 2.554032 ACGCCAACATTCAGAAAAGGAG 59.446 45.455 0.00 0.00 0.00 3.69
356 357 2.554032 CGCCAACATTCAGAAAAGGAGT 59.446 45.455 0.00 0.00 0.00 3.85
357 358 3.610114 CGCCAACATTCAGAAAAGGAGTG 60.610 47.826 0.00 0.00 0.00 3.51
358 359 3.569701 GCCAACATTCAGAAAAGGAGTGA 59.430 43.478 0.00 0.00 0.00 3.41
359 360 4.037923 GCCAACATTCAGAAAAGGAGTGAA 59.962 41.667 0.00 0.00 34.79 3.18
360 361 5.451798 GCCAACATTCAGAAAAGGAGTGAAA 60.452 40.000 0.00 0.00 34.02 2.69
361 362 6.572519 CCAACATTCAGAAAAGGAGTGAAAA 58.427 36.000 0.00 0.00 34.02 2.29
362 363 6.476706 CCAACATTCAGAAAAGGAGTGAAAAC 59.523 38.462 0.00 0.00 34.02 2.43
363 364 6.773976 ACATTCAGAAAAGGAGTGAAAACA 57.226 33.333 0.00 0.00 34.02 2.83
364 365 7.169158 ACATTCAGAAAAGGAGTGAAAACAA 57.831 32.000 0.00 0.00 34.02 2.83
365 366 7.035612 ACATTCAGAAAAGGAGTGAAAACAAC 58.964 34.615 0.00 0.00 34.02 3.32
366 367 5.229921 TCAGAAAAGGAGTGAAAACAACG 57.770 39.130 0.00 0.00 0.00 4.10
367 368 3.791353 CAGAAAAGGAGTGAAAACAACGC 59.209 43.478 0.00 0.00 0.00 4.84
368 369 3.694566 AGAAAAGGAGTGAAAACAACGCT 59.305 39.130 0.00 0.00 0.00 5.07
369 370 3.420839 AAAGGAGTGAAAACAACGCTG 57.579 42.857 0.00 0.00 0.00 5.18
370 371 0.663153 AGGAGTGAAAACAACGCTGC 59.337 50.000 0.00 0.00 36.69 5.25
371 372 0.663153 GGAGTGAAAACAACGCTGCT 59.337 50.000 0.00 0.00 34.37 4.24
372 373 1.871039 GGAGTGAAAACAACGCTGCTA 59.129 47.619 0.00 0.00 34.37 3.49
373 374 2.484264 GGAGTGAAAACAACGCTGCTAT 59.516 45.455 0.00 0.00 34.37 2.97
374 375 3.058224 GGAGTGAAAACAACGCTGCTATT 60.058 43.478 0.00 0.00 34.37 1.73
375 376 4.153475 GGAGTGAAAACAACGCTGCTATTA 59.847 41.667 0.00 0.00 34.37 0.98
376 377 5.283060 AGTGAAAACAACGCTGCTATTAG 57.717 39.130 0.00 0.00 0.00 1.73
377 378 3.846335 GTGAAAACAACGCTGCTATTAGC 59.154 43.478 8.80 8.80 42.82 3.09
383 384 2.942105 GCTGCTATTAGCGCTGCC 59.058 61.111 22.90 3.88 46.26 4.85
384 385 2.947890 GCTGCTATTAGCGCTGCCG 61.948 63.158 22.90 12.38 46.26 5.69
385 386 2.280119 TGCTATTAGCGCTGCCGG 60.280 61.111 22.90 9.01 46.26 6.13
386 387 2.029073 GCTATTAGCGCTGCCGGA 59.971 61.111 22.90 0.00 34.32 5.14
387 388 2.024319 GCTATTAGCGCTGCCGGAG 61.024 63.158 22.90 10.98 34.32 4.63
388 389 1.660355 CTATTAGCGCTGCCGGAGA 59.340 57.895 22.90 0.00 34.32 3.71
389 390 0.244994 CTATTAGCGCTGCCGGAGAT 59.755 55.000 22.90 5.04 34.32 2.75
390 391 0.679505 TATTAGCGCTGCCGGAGATT 59.320 50.000 22.90 0.00 34.32 2.40
391 392 0.179045 ATTAGCGCTGCCGGAGATTT 60.179 50.000 22.90 0.00 34.32 2.17
392 393 1.089481 TTAGCGCTGCCGGAGATTTG 61.089 55.000 22.90 0.00 34.32 2.32
393 394 2.923426 TAGCGCTGCCGGAGATTTGG 62.923 60.000 22.90 0.00 34.32 3.28
400 401 3.861341 CCGGAGATTTGGCAAGAGA 57.139 52.632 0.00 0.00 0.00 3.10
401 402 1.661341 CCGGAGATTTGGCAAGAGAG 58.339 55.000 0.00 0.00 0.00 3.20
402 403 1.208052 CCGGAGATTTGGCAAGAGAGA 59.792 52.381 0.00 0.00 0.00 3.10
423 424 3.532155 GGCGTGTTTGGTTGCCCA 61.532 61.111 0.00 0.00 41.70 5.36
431 432 0.179004 TTTGGTTGCCCACATCGAGT 60.179 50.000 0.00 0.00 41.67 4.18
459 460 4.530857 CCGCGCGGGAAGGAAGAT 62.531 66.667 40.50 0.00 38.47 2.40
500 501 2.046023 CTGTTGGGCCTGCATCGA 60.046 61.111 4.53 0.00 0.00 3.59
527 529 1.605738 CAAAGCAGCCCAGAGCCTT 60.606 57.895 0.00 0.00 45.47 4.35
545 547 2.738521 GCTCGCTGGAAACGCTCA 60.739 61.111 0.00 0.00 0.00 4.26
566 568 1.063764 GATCGGTAGTTTCTCGCGAGT 59.936 52.381 33.33 18.27 0.00 4.18
670 675 2.591715 CCCGGCGCCAAATCTAGG 60.592 66.667 28.98 17.31 0.00 3.02
732 743 3.054065 CCTTTCTTCCCTATTGCCTCACT 60.054 47.826 0.00 0.00 0.00 3.41
801 827 4.807039 GCGGAAGAGGCGGCGTTA 62.807 66.667 9.37 0.00 0.00 3.18
829 855 4.666253 TGGTGCTCCCCTTGCTGC 62.666 66.667 1.59 0.00 0.00 5.25
866 893 2.345760 CCTTGTCTGTGCCATGGCC 61.346 63.158 33.44 23.83 41.09 5.36
967 996 3.967987 AGGCTAGGTGTAGGATCGATTTT 59.032 43.478 0.00 0.00 0.00 1.82
985 1015 0.460722 TTCCACTGAACGAACCGTCA 59.539 50.000 0.00 0.00 39.99 4.35
1208 1238 0.251354 GAGGCTCTGTGGATGCTTCA 59.749 55.000 7.40 0.00 33.81 3.02
1293 1323 1.865865 ACATCAACACCAGTGTCGAC 58.134 50.000 9.11 9.11 44.13 4.20
1296 1326 0.456628 TCAACACCAGTGTCGACGAA 59.543 50.000 11.62 0.00 44.13 3.85
1418 1448 2.086869 GCAGGTGCTTCTTGCTATTGA 58.913 47.619 8.68 0.00 44.21 2.57
1552 1584 5.756195 TTCATGGCTTGATATGCTTGTAC 57.244 39.130 3.72 0.00 33.34 2.90
1568 1600 4.023707 GCTTGTACTGTTCAAGTTGAGCAT 60.024 41.667 20.85 13.88 42.67 3.79
1610 1642 2.323999 TTTCAGGATTGCATTGGGGT 57.676 45.000 0.00 0.00 0.00 4.95
1662 1694 2.309162 TCCTAGGTCACAGTCTACAGCT 59.691 50.000 9.08 0.00 0.00 4.24
1731 1763 6.115446 TGTTGACTTTGATCTGAAGTTCACT 58.885 36.000 13.75 0.00 37.46 3.41
1784 1816 4.261072 GCATGATGCTAACATTCTCAGTGG 60.261 45.833 10.72 0.00 40.96 4.00
1808 1840 1.115467 ATGAGTCGACCTGATGGGAC 58.885 55.000 13.01 0.00 38.76 4.46
1908 1940 2.467880 ACCAGGTACCATCTCAACGAT 58.532 47.619 15.94 0.00 0.00 3.73
1988 2020 7.069986 TCCAGCCTTAGAGTAACTATTGAGAT 58.930 38.462 0.00 0.00 0.00 2.75
2058 2090 2.568546 TCCACCCATACTCCACTCAT 57.431 50.000 0.00 0.00 0.00 2.90
2131 2163 1.804151 GCTTTGATGAACACGTGCCTA 59.196 47.619 17.22 1.58 0.00 3.93
2179 2211 0.978667 TGTTAGCTCCGGCCATGGTA 60.979 55.000 14.67 0.00 39.73 3.25
2332 2374 2.901291 AGCAGAAGAAGAGGAAGAGGT 58.099 47.619 0.00 0.00 0.00 3.85
2430 2472 9.689976 CTGTCATTTGATAGTAGTTAGGATGAG 57.310 37.037 0.00 0.00 0.00 2.90
2459 2501 6.095440 CCATTTGTTTAACTAGCTGCCACTAT 59.905 38.462 0.00 0.00 0.00 2.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.341235 GCAGACTGGTCCATGTAGTATGTA 59.659 45.833 4.26 0.00 36.37 2.29
1 2 3.133003 GCAGACTGGTCCATGTAGTATGT 59.867 47.826 4.26 0.00 36.37 2.29
2 3 3.386078 AGCAGACTGGTCCATGTAGTATG 59.614 47.826 0.07 0.00 36.89 2.39
3 4 3.647636 AGCAGACTGGTCCATGTAGTAT 58.352 45.455 0.07 0.00 0.00 2.12
4 5 3.101643 AGCAGACTGGTCCATGTAGTA 57.898 47.619 0.07 0.00 0.00 1.82
5 6 1.944177 AGCAGACTGGTCCATGTAGT 58.056 50.000 0.07 0.00 0.00 2.73
6 7 2.027745 ACAAGCAGACTGGTCCATGTAG 60.028 50.000 7.78 0.00 0.00 2.74
7 8 1.977854 ACAAGCAGACTGGTCCATGTA 59.022 47.619 7.78 0.00 0.00 2.29
8 9 0.767375 ACAAGCAGACTGGTCCATGT 59.233 50.000 7.78 6.14 0.00 3.21
9 10 2.289631 TGTACAAGCAGACTGGTCCATG 60.290 50.000 7.78 5.48 30.57 3.66
10 11 1.977854 TGTACAAGCAGACTGGTCCAT 59.022 47.619 7.78 0.00 30.57 3.41
11 12 1.419381 TGTACAAGCAGACTGGTCCA 58.581 50.000 7.78 0.32 30.57 4.02
12 13 2.417719 CTTGTACAAGCAGACTGGTCC 58.582 52.381 22.03 0.00 30.57 4.46
13 14 2.224305 ACCTTGTACAAGCAGACTGGTC 60.224 50.000 27.05 0.00 37.11 4.02
14 15 1.768870 ACCTTGTACAAGCAGACTGGT 59.231 47.619 27.05 16.96 37.11 4.00
15 16 2.146342 CACCTTGTACAAGCAGACTGG 58.854 52.381 27.05 16.35 37.11 4.00
16 17 2.146342 CCACCTTGTACAAGCAGACTG 58.854 52.381 27.05 15.89 37.11 3.51
17 18 1.768870 ACCACCTTGTACAAGCAGACT 59.231 47.619 27.05 7.49 37.11 3.24
18 19 2.143925 GACCACCTTGTACAAGCAGAC 58.856 52.381 27.05 14.74 37.11 3.51
19 20 1.765904 TGACCACCTTGTACAAGCAGA 59.234 47.619 27.05 6.92 37.11 4.26
20 21 2.254546 TGACCACCTTGTACAAGCAG 57.745 50.000 27.05 20.33 37.11 4.24
21 22 2.719531 TTGACCACCTTGTACAAGCA 57.280 45.000 27.05 17.18 37.11 3.91
22 23 3.058224 GTGATTGACCACCTTGTACAAGC 60.058 47.826 27.05 14.97 37.11 4.01
23 24 3.186409 CGTGATTGACCACCTTGTACAAG 59.814 47.826 25.79 25.79 38.14 3.16
24 25 3.135225 CGTGATTGACCACCTTGTACAA 58.865 45.455 8.28 8.28 33.67 2.41
25 26 2.365941 TCGTGATTGACCACCTTGTACA 59.634 45.455 0.00 0.00 33.67 2.90
26 27 3.034721 TCGTGATTGACCACCTTGTAC 57.965 47.619 0.00 0.00 33.67 2.90
27 28 3.007506 ACATCGTGATTGACCACCTTGTA 59.992 43.478 0.00 0.00 33.67 2.41
28 29 2.224523 ACATCGTGATTGACCACCTTGT 60.225 45.455 0.00 0.00 33.67 3.16
29 30 2.160219 CACATCGTGATTGACCACCTTG 59.840 50.000 0.00 0.00 35.23 3.61
30 31 2.038426 TCACATCGTGATTGACCACCTT 59.962 45.455 0.00 0.00 37.67 3.50
31 32 1.623311 TCACATCGTGATTGACCACCT 59.377 47.619 0.00 0.00 37.67 4.00
32 33 2.093306 TCACATCGTGATTGACCACC 57.907 50.000 0.00 0.00 37.67 4.61
56 57 5.209240 CGATTAGACGAAACAAGGCAAAAA 58.791 37.500 0.00 0.00 35.09 1.94
57 58 4.778904 CGATTAGACGAAACAAGGCAAAA 58.221 39.130 0.00 0.00 35.09 2.44
58 59 3.364565 GCGATTAGACGAAACAAGGCAAA 60.365 43.478 0.00 0.00 35.09 3.68
59 60 2.158841 GCGATTAGACGAAACAAGGCAA 59.841 45.455 0.00 0.00 35.09 4.52
60 61 1.730064 GCGATTAGACGAAACAAGGCA 59.270 47.619 0.00 0.00 35.09 4.75
61 62 1.062148 GGCGATTAGACGAAACAAGGC 59.938 52.381 0.00 0.00 35.09 4.35
62 63 2.618053 AGGCGATTAGACGAAACAAGG 58.382 47.619 0.00 0.00 35.09 3.61
63 64 5.968387 ATAAGGCGATTAGACGAAACAAG 57.032 39.130 0.00 0.00 35.09 3.16
64 65 5.870433 TGAATAAGGCGATTAGACGAAACAA 59.130 36.000 0.00 0.00 35.09 2.83
65 66 5.412640 TGAATAAGGCGATTAGACGAAACA 58.587 37.500 0.00 0.00 35.09 2.83
66 67 5.961395 TGAATAAGGCGATTAGACGAAAC 57.039 39.130 0.00 0.00 35.09 2.78
67 68 6.103997 ACTTGAATAAGGCGATTAGACGAAA 58.896 36.000 0.00 0.00 38.26 3.46
68 69 5.657474 ACTTGAATAAGGCGATTAGACGAA 58.343 37.500 0.00 0.00 38.26 3.85
69 70 5.258456 ACTTGAATAAGGCGATTAGACGA 57.742 39.130 0.00 0.00 38.26 4.20
70 71 5.050972 GGAACTTGAATAAGGCGATTAGACG 60.051 44.000 0.00 0.00 38.26 4.18
71 72 5.050972 CGGAACTTGAATAAGGCGATTAGAC 60.051 44.000 0.00 0.00 38.26 2.59
72 73 5.047847 CGGAACTTGAATAAGGCGATTAGA 58.952 41.667 0.00 0.00 38.26 2.10
73 74 4.318831 GCGGAACTTGAATAAGGCGATTAG 60.319 45.833 0.00 0.00 38.26 1.73
74 75 3.558418 GCGGAACTTGAATAAGGCGATTA 59.442 43.478 0.00 0.00 38.26 1.75
75 76 2.354821 GCGGAACTTGAATAAGGCGATT 59.645 45.455 0.00 0.00 38.26 3.34
76 77 1.940613 GCGGAACTTGAATAAGGCGAT 59.059 47.619 0.00 0.00 38.26 4.58
77 78 1.066430 AGCGGAACTTGAATAAGGCGA 60.066 47.619 0.00 0.00 38.26 5.54
78 79 1.327764 GAGCGGAACTTGAATAAGGCG 59.672 52.381 0.00 0.00 38.26 5.52
79 80 2.352960 CAGAGCGGAACTTGAATAAGGC 59.647 50.000 0.00 0.00 38.26 4.35
80 81 2.939103 CCAGAGCGGAACTTGAATAAGG 59.061 50.000 0.00 0.00 35.94 2.69
81 82 3.600388 ACCAGAGCGGAACTTGAATAAG 58.400 45.455 0.00 0.00 38.63 1.73
82 83 3.695830 ACCAGAGCGGAACTTGAATAA 57.304 42.857 0.00 0.00 38.63 1.40
83 84 3.695830 AACCAGAGCGGAACTTGAATA 57.304 42.857 0.00 0.00 38.63 1.75
84 85 2.568623 AACCAGAGCGGAACTTGAAT 57.431 45.000 0.00 0.00 38.63 2.57
85 86 3.007506 TGATAACCAGAGCGGAACTTGAA 59.992 43.478 0.00 0.00 38.63 2.69
86 87 2.565391 TGATAACCAGAGCGGAACTTGA 59.435 45.455 0.00 0.00 38.63 3.02
87 88 2.972625 TGATAACCAGAGCGGAACTTG 58.027 47.619 0.00 0.00 38.63 3.16
88 89 3.055094 ACATGATAACCAGAGCGGAACTT 60.055 43.478 0.00 0.00 38.63 2.66
89 90 2.501723 ACATGATAACCAGAGCGGAACT 59.498 45.455 0.00 0.00 38.63 3.01
90 91 2.906354 ACATGATAACCAGAGCGGAAC 58.094 47.619 0.00 0.00 38.63 3.62
91 92 3.627395 AACATGATAACCAGAGCGGAA 57.373 42.857 0.00 0.00 38.63 4.30
92 93 4.955811 ATAACATGATAACCAGAGCGGA 57.044 40.909 0.00 0.00 38.63 5.54
93 94 5.049405 GGAAATAACATGATAACCAGAGCGG 60.049 44.000 0.00 0.00 42.50 5.52
94 95 5.760253 AGGAAATAACATGATAACCAGAGCG 59.240 40.000 0.00 0.00 0.00 5.03
95 96 6.543831 ACAGGAAATAACATGATAACCAGAGC 59.456 38.462 0.00 0.00 0.00 4.09
96 97 7.012704 CCACAGGAAATAACATGATAACCAGAG 59.987 40.741 0.00 0.00 0.00 3.35
97 98 6.828273 CCACAGGAAATAACATGATAACCAGA 59.172 38.462 0.00 0.00 0.00 3.86
98 99 6.828273 TCCACAGGAAATAACATGATAACCAG 59.172 38.462 0.00 0.00 0.00 4.00
99 100 6.726379 TCCACAGGAAATAACATGATAACCA 58.274 36.000 0.00 0.00 0.00 3.67
100 101 7.639113 TTCCACAGGAAATAACATGATAACC 57.361 36.000 0.00 0.00 38.93 2.85
119 120 4.813296 AAGATCGAACTTGTGTTTCCAC 57.187 40.909 7.19 0.00 42.19 4.02
120 121 5.828299 AAAAGATCGAACTTGTGTTTCCA 57.172 34.783 8.86 0.00 36.39 3.53
121 122 7.415229 ACTAAAAAGATCGAACTTGTGTTTCC 58.585 34.615 8.86 0.00 36.39 3.13
122 123 8.836959 AACTAAAAAGATCGAACTTGTGTTTC 57.163 30.769 8.86 0.00 36.39 2.78
123 124 7.913821 GGAACTAAAAAGATCGAACTTGTGTTT 59.086 33.333 8.86 8.44 36.39 2.83
124 125 7.066525 TGGAACTAAAAAGATCGAACTTGTGTT 59.933 33.333 8.86 10.84 39.42 3.32
125 126 6.540914 TGGAACTAAAAAGATCGAACTTGTGT 59.459 34.615 8.86 3.42 0.00 3.72
126 127 6.954944 TGGAACTAAAAAGATCGAACTTGTG 58.045 36.000 8.86 2.85 0.00 3.33
127 128 7.745620 ATGGAACTAAAAAGATCGAACTTGT 57.254 32.000 8.86 0.00 0.00 3.16
128 129 9.760660 CTAATGGAACTAAAAAGATCGAACTTG 57.239 33.333 8.86 0.00 0.00 3.16
129 130 9.503399 ACTAATGGAACTAAAAAGATCGAACTT 57.497 29.630 1.52 1.52 0.00 2.66
130 131 9.152595 GACTAATGGAACTAAAAAGATCGAACT 57.847 33.333 0.00 0.00 0.00 3.01
131 132 8.932791 TGACTAATGGAACTAAAAAGATCGAAC 58.067 33.333 0.00 0.00 0.00 3.95
132 133 9.496873 TTGACTAATGGAACTAAAAAGATCGAA 57.503 29.630 0.00 0.00 0.00 3.71
133 134 9.151471 CTTGACTAATGGAACTAAAAAGATCGA 57.849 33.333 0.00 0.00 0.00 3.59
134 135 7.905493 GCTTGACTAATGGAACTAAAAAGATCG 59.095 37.037 0.00 0.00 0.00 3.69
135 136 8.951243 AGCTTGACTAATGGAACTAAAAAGATC 58.049 33.333 0.00 0.00 0.00 2.75
136 137 8.870075 AGCTTGACTAATGGAACTAAAAAGAT 57.130 30.769 0.00 0.00 0.00 2.40
137 138 8.691661 AAGCTTGACTAATGGAACTAAAAAGA 57.308 30.769 0.00 0.00 0.00 2.52
141 142 9.174166 GGATAAAGCTTGACTAATGGAACTAAA 57.826 33.333 0.00 0.00 0.00 1.85
142 143 8.325787 TGGATAAAGCTTGACTAATGGAACTAA 58.674 33.333 0.00 0.00 0.00 2.24
143 144 7.857456 TGGATAAAGCTTGACTAATGGAACTA 58.143 34.615 0.00 0.00 0.00 2.24
144 145 6.721318 TGGATAAAGCTTGACTAATGGAACT 58.279 36.000 0.00 0.00 0.00 3.01
145 146 7.573968 ATGGATAAAGCTTGACTAATGGAAC 57.426 36.000 0.00 0.00 0.00 3.62
146 147 8.469200 CAAATGGATAAAGCTTGACTAATGGAA 58.531 33.333 0.00 0.00 0.00 3.53
147 148 7.833682 TCAAATGGATAAAGCTTGACTAATGGA 59.166 33.333 0.00 0.00 0.00 3.41
148 149 7.999679 TCAAATGGATAAAGCTTGACTAATGG 58.000 34.615 0.00 0.00 0.00 3.16
149 150 8.896744 TCTCAAATGGATAAAGCTTGACTAATG 58.103 33.333 0.00 0.00 0.00 1.90
150 151 9.466497 TTCTCAAATGGATAAAGCTTGACTAAT 57.534 29.630 0.00 0.00 0.00 1.73
151 152 8.862325 TTCTCAAATGGATAAAGCTTGACTAA 57.138 30.769 0.00 0.00 0.00 2.24
152 153 8.862325 TTTCTCAAATGGATAAAGCTTGACTA 57.138 30.769 0.00 0.00 0.00 2.59
153 154 7.765695 TTTCTCAAATGGATAAAGCTTGACT 57.234 32.000 0.00 0.00 0.00 3.41
154 155 8.992835 ATTTTCTCAAATGGATAAAGCTTGAC 57.007 30.769 0.00 0.00 30.89 3.18
155 156 9.426837 CAATTTTCTCAAATGGATAAAGCTTGA 57.573 29.630 0.00 0.00 32.57 3.02
156 157 9.211485 ACAATTTTCTCAAATGGATAAAGCTTG 57.789 29.630 0.00 0.00 32.57 4.01
157 158 9.783081 AACAATTTTCTCAAATGGATAAAGCTT 57.217 25.926 0.00 0.00 32.57 3.74
166 167 9.357652 CCATGTAGTAACAATTTTCTCAAATGG 57.642 33.333 0.00 0.00 39.58 3.16
167 168 9.912634 ACCATGTAGTAACAATTTTCTCAAATG 57.087 29.630 0.00 0.00 39.58 2.32
169 170 9.959749 GAACCATGTAGTAACAATTTTCTCAAA 57.040 29.630 0.00 0.00 39.58 2.69
170 171 9.126151 TGAACCATGTAGTAACAATTTTCTCAA 57.874 29.630 0.00 0.00 39.58 3.02
171 172 8.564574 GTGAACCATGTAGTAACAATTTTCTCA 58.435 33.333 0.00 0.00 39.58 3.27
172 173 8.021396 GGTGAACCATGTAGTAACAATTTTCTC 58.979 37.037 0.00 0.00 39.58 2.87
173 174 7.504238 TGGTGAACCATGTAGTAACAATTTTCT 59.496 33.333 0.00 0.00 42.01 2.52
174 175 7.653647 TGGTGAACCATGTAGTAACAATTTTC 58.346 34.615 0.00 0.00 42.01 2.29
175 176 7.589958 TGGTGAACCATGTAGTAACAATTTT 57.410 32.000 0.00 0.00 42.01 1.82
176 177 7.589958 TTGGTGAACCATGTAGTAACAATTT 57.410 32.000 2.34 0.00 46.97 1.82
177 178 6.294508 GCTTGGTGAACCATGTAGTAACAATT 60.295 38.462 14.74 0.00 46.97 2.32
178 179 5.183140 GCTTGGTGAACCATGTAGTAACAAT 59.817 40.000 14.74 0.00 46.97 2.71
179 180 4.517453 GCTTGGTGAACCATGTAGTAACAA 59.483 41.667 14.74 0.00 46.97 2.83
180 181 4.069304 GCTTGGTGAACCATGTAGTAACA 58.931 43.478 14.74 0.00 46.97 2.41
181 182 4.154195 CAGCTTGGTGAACCATGTAGTAAC 59.846 45.833 14.74 0.51 46.97 2.50
182 183 4.041075 TCAGCTTGGTGAACCATGTAGTAA 59.959 41.667 14.74 0.00 46.97 2.24
183 184 3.580895 TCAGCTTGGTGAACCATGTAGTA 59.419 43.478 14.74 0.00 46.97 1.82
184 185 2.371841 TCAGCTTGGTGAACCATGTAGT 59.628 45.455 14.74 0.92 46.97 2.73
185 186 2.744202 GTCAGCTTGGTGAACCATGTAG 59.256 50.000 14.74 6.33 46.97 2.74
186 187 2.371841 AGTCAGCTTGGTGAACCATGTA 59.628 45.455 14.74 0.00 46.97 2.29
187 188 1.143684 AGTCAGCTTGGTGAACCATGT 59.856 47.619 14.74 2.29 46.97 3.21
188 189 1.901591 AGTCAGCTTGGTGAACCATG 58.098 50.000 2.34 7.00 46.97 3.66
189 190 3.181445 TGTTAGTCAGCTTGGTGAACCAT 60.181 43.478 2.34 0.00 46.97 3.55
190 191 2.171659 TGTTAGTCAGCTTGGTGAACCA 59.828 45.455 3.99 0.00 45.94 3.67
191 192 2.846193 TGTTAGTCAGCTTGGTGAACC 58.154 47.619 3.99 0.00 0.00 3.62
192 193 6.204882 ACTTTATGTTAGTCAGCTTGGTGAAC 59.795 38.462 3.99 0.81 0.00 3.18
193 194 6.296026 ACTTTATGTTAGTCAGCTTGGTGAA 58.704 36.000 3.99 0.00 0.00 3.18
194 195 5.865085 ACTTTATGTTAGTCAGCTTGGTGA 58.135 37.500 0.00 0.00 0.00 4.02
195 196 6.560253 AACTTTATGTTAGTCAGCTTGGTG 57.440 37.500 0.00 0.00 37.07 4.17
207 208 5.503002 GTTGAGGCCCCTAACTTTATGTTA 58.497 41.667 0.00 0.00 39.89 2.41
208 209 4.341487 GTTGAGGCCCCTAACTTTATGTT 58.659 43.478 0.00 0.00 42.31 2.71
209 210 3.621461 CGTTGAGGCCCCTAACTTTATGT 60.621 47.826 0.00 0.00 0.00 2.29
210 211 2.943033 CGTTGAGGCCCCTAACTTTATG 59.057 50.000 0.00 0.00 0.00 1.90
211 212 2.574824 ACGTTGAGGCCCCTAACTTTAT 59.425 45.455 0.00 0.00 0.00 1.40
212 213 1.980036 ACGTTGAGGCCCCTAACTTTA 59.020 47.619 0.00 0.00 0.00 1.85
213 214 0.769247 ACGTTGAGGCCCCTAACTTT 59.231 50.000 0.00 0.00 0.00 2.66
214 215 0.323957 GACGTTGAGGCCCCTAACTT 59.676 55.000 0.00 0.00 0.00 2.66
215 216 1.551019 GGACGTTGAGGCCCCTAACT 61.551 60.000 0.00 0.00 44.51 2.24
216 217 1.078637 GGACGTTGAGGCCCCTAAC 60.079 63.158 0.00 1.21 44.51 2.34
217 218 3.395630 GGACGTTGAGGCCCCTAA 58.604 61.111 0.00 0.00 44.51 2.69
223 224 0.535335 TGTATCTGGGACGTTGAGGC 59.465 55.000 0.00 0.00 0.00 4.70
224 225 2.430694 TCATGTATCTGGGACGTTGAGG 59.569 50.000 0.00 0.00 0.00 3.86
225 226 3.801114 TCATGTATCTGGGACGTTGAG 57.199 47.619 0.00 0.00 0.00 3.02
226 227 4.545208 TTTCATGTATCTGGGACGTTGA 57.455 40.909 0.00 0.00 0.00 3.18
227 228 5.621197 TTTTTCATGTATCTGGGACGTTG 57.379 39.130 0.00 0.00 0.00 4.10
228 229 5.943416 TGATTTTTCATGTATCTGGGACGTT 59.057 36.000 0.00 0.00 0.00 3.99
229 230 5.496556 TGATTTTTCATGTATCTGGGACGT 58.503 37.500 0.00 0.00 0.00 4.34
230 231 5.817296 TCTGATTTTTCATGTATCTGGGACG 59.183 40.000 0.00 0.00 0.00 4.79
231 232 7.814264 ATCTGATTTTTCATGTATCTGGGAC 57.186 36.000 0.00 0.00 0.00 4.46
232 233 9.919416 TTTATCTGATTTTTCATGTATCTGGGA 57.081 29.630 0.00 0.00 0.00 4.37
252 253 9.508642 GGGTTAGCTAAGCATAATCTTTTATCT 57.491 33.333 30.78 0.00 35.51 1.98
253 254 9.284968 TGGGTTAGCTAAGCATAATCTTTTATC 57.715 33.333 30.78 13.33 35.51 1.75
254 255 9.813826 ATGGGTTAGCTAAGCATAATCTTTTAT 57.186 29.630 30.78 10.50 35.51 1.40
255 256 9.066892 CATGGGTTAGCTAAGCATAATCTTTTA 57.933 33.333 30.78 9.03 35.51 1.52
256 257 7.779798 TCATGGGTTAGCTAAGCATAATCTTTT 59.220 33.333 30.78 6.48 35.51 2.27
257 258 7.290061 TCATGGGTTAGCTAAGCATAATCTTT 58.710 34.615 30.78 7.07 35.51 2.52
258 259 6.841601 TCATGGGTTAGCTAAGCATAATCTT 58.158 36.000 30.78 12.77 35.51 2.40
259 260 6.439636 TCATGGGTTAGCTAAGCATAATCT 57.560 37.500 30.78 10.38 35.51 2.40
260 261 5.123027 GCTCATGGGTTAGCTAAGCATAATC 59.877 44.000 30.78 16.97 35.80 1.75
261 262 5.006386 GCTCATGGGTTAGCTAAGCATAAT 58.994 41.667 30.78 20.02 35.80 1.28
262 263 4.389374 GCTCATGGGTTAGCTAAGCATAA 58.611 43.478 30.78 18.88 35.80 1.90
263 264 3.244561 GGCTCATGGGTTAGCTAAGCATA 60.245 47.826 30.78 21.41 38.80 3.14
264 265 2.487986 GGCTCATGGGTTAGCTAAGCAT 60.488 50.000 30.78 20.78 38.80 3.79
265 266 1.134098 GGCTCATGGGTTAGCTAAGCA 60.134 52.381 30.78 19.69 38.80 3.91
266 267 1.134098 TGGCTCATGGGTTAGCTAAGC 60.134 52.381 24.31 24.31 38.80 3.09
267 268 2.171448 AGTGGCTCATGGGTTAGCTAAG 59.829 50.000 6.38 0.00 38.80 2.18
268 269 2.196595 AGTGGCTCATGGGTTAGCTAA 58.803 47.619 0.86 0.86 38.80 3.09
269 270 1.879575 AGTGGCTCATGGGTTAGCTA 58.120 50.000 0.00 0.00 38.80 3.32
270 271 1.879575 TAGTGGCTCATGGGTTAGCT 58.120 50.000 0.00 0.00 38.80 3.32
271 272 2.938956 ATAGTGGCTCATGGGTTAGC 57.061 50.000 0.00 0.00 38.03 3.09
272 273 5.248640 CCAATATAGTGGCTCATGGGTTAG 58.751 45.833 6.23 0.00 0.00 2.34
273 274 5.241403 CCAATATAGTGGCTCATGGGTTA 57.759 43.478 6.23 0.00 0.00 2.85
274 275 4.104383 CCAATATAGTGGCTCATGGGTT 57.896 45.455 6.23 0.00 0.00 4.11
275 276 3.795688 CCAATATAGTGGCTCATGGGT 57.204 47.619 6.23 0.00 0.00 4.51
284 285 2.494059 CGGTTGAGGCCAATATAGTGG 58.506 52.381 14.95 14.95 42.05 4.00
285 286 2.158813 ACCGGTTGAGGCCAATATAGTG 60.159 50.000 5.01 0.00 34.39 2.74
286 287 2.124411 ACCGGTTGAGGCCAATATAGT 58.876 47.619 5.01 0.00 34.39 2.12
287 288 2.930826 ACCGGTTGAGGCCAATATAG 57.069 50.000 5.01 0.00 34.39 1.31
288 289 4.348461 TCAATACCGGTTGAGGCCAATATA 59.652 41.667 15.04 0.00 33.41 0.86
289 290 3.137544 TCAATACCGGTTGAGGCCAATAT 59.862 43.478 15.04 0.00 33.41 1.28
290 291 2.506231 TCAATACCGGTTGAGGCCAATA 59.494 45.455 15.04 0.00 33.41 1.90
291 292 1.283613 TCAATACCGGTTGAGGCCAAT 59.716 47.619 15.04 0.00 33.41 3.16
292 293 0.693622 TCAATACCGGTTGAGGCCAA 59.306 50.000 15.04 0.00 33.41 4.52
293 294 0.916086 ATCAATACCGGTTGAGGCCA 59.084 50.000 15.04 0.00 41.05 5.36
294 295 1.141053 AGATCAATACCGGTTGAGGCC 59.859 52.381 15.04 5.26 41.05 5.19
295 296 2.614057 CAAGATCAATACCGGTTGAGGC 59.386 50.000 15.04 8.08 41.05 4.70
296 297 2.614057 GCAAGATCAATACCGGTTGAGG 59.386 50.000 15.04 4.16 41.05 3.86
297 298 2.614057 GGCAAGATCAATACCGGTTGAG 59.386 50.000 15.04 2.41 41.05 3.02
298 299 2.026729 TGGCAAGATCAATACCGGTTGA 60.027 45.455 15.04 12.79 41.88 3.18
299 300 2.364632 TGGCAAGATCAATACCGGTTG 58.635 47.619 15.04 6.07 0.00 3.77
300 301 2.799126 TGGCAAGATCAATACCGGTT 57.201 45.000 15.04 0.00 0.00 4.44
301 302 2.172505 TGATGGCAAGATCAATACCGGT 59.827 45.455 13.98 13.98 29.11 5.28
302 303 2.849942 TGATGGCAAGATCAATACCGG 58.150 47.619 0.00 0.00 29.11 5.28
303 304 3.124128 CGATGATGGCAAGATCAATACCG 59.876 47.826 0.00 0.00 35.97 4.02
304 305 4.153117 GTCGATGATGGCAAGATCAATACC 59.847 45.833 0.00 0.00 35.97 2.73
305 306 4.143242 CGTCGATGATGGCAAGATCAATAC 60.143 45.833 0.00 0.00 35.97 1.89
306 307 3.989817 CGTCGATGATGGCAAGATCAATA 59.010 43.478 0.00 0.00 35.97 1.90
307 308 2.804527 CGTCGATGATGGCAAGATCAAT 59.195 45.455 0.00 0.00 35.97 2.57
308 309 2.204237 CGTCGATGATGGCAAGATCAA 58.796 47.619 0.00 0.00 35.97 2.57
309 310 1.538849 CCGTCGATGATGGCAAGATCA 60.539 52.381 6.11 0.00 36.78 2.92
310 311 1.143305 CCGTCGATGATGGCAAGATC 58.857 55.000 6.11 0.00 31.58 2.75
311 312 0.752658 TCCGTCGATGATGGCAAGAT 59.247 50.000 6.11 0.00 38.52 2.40
312 313 0.534873 TTCCGTCGATGATGGCAAGA 59.465 50.000 6.11 0.00 38.52 3.02
313 314 0.933097 CTTCCGTCGATGATGGCAAG 59.067 55.000 6.11 2.56 38.52 4.01
314 315 1.089481 GCTTCCGTCGATGATGGCAA 61.089 55.000 6.11 0.00 38.52 4.52
315 316 1.521457 GCTTCCGTCGATGATGGCA 60.521 57.895 6.11 0.00 38.52 4.92
316 317 1.521457 TGCTTCCGTCGATGATGGC 60.521 57.895 6.11 7.39 38.52 4.40
317 318 1.482621 CGTGCTTCCGTCGATGATGG 61.483 60.000 6.11 0.00 39.89 3.51
318 319 1.920051 CGTGCTTCCGTCGATGATG 59.080 57.895 6.11 1.54 0.00 3.07
319 320 1.878522 GCGTGCTTCCGTCGATGAT 60.879 57.895 6.11 0.00 0.00 2.45
320 321 2.506217 GCGTGCTTCCGTCGATGA 60.506 61.111 6.11 0.00 0.00 2.92
321 322 3.554692 GGCGTGCTTCCGTCGATG 61.555 66.667 0.00 0.00 0.00 3.84
322 323 3.583276 TTGGCGTGCTTCCGTCGAT 62.583 57.895 0.00 0.00 34.56 3.59
323 324 4.287781 TTGGCGTGCTTCCGTCGA 62.288 61.111 0.00 0.00 34.56 4.20
324 325 4.072088 GTTGGCGTGCTTCCGTCG 62.072 66.667 0.00 0.00 34.56 5.12
325 326 1.852067 AATGTTGGCGTGCTTCCGTC 61.852 55.000 0.00 0.00 0.00 4.79
326 327 1.852067 GAATGTTGGCGTGCTTCCGT 61.852 55.000 0.00 0.00 0.00 4.69
327 328 1.154225 GAATGTTGGCGTGCTTCCG 60.154 57.895 0.00 0.00 0.00 4.30
328 329 0.109597 CTGAATGTTGGCGTGCTTCC 60.110 55.000 0.00 0.00 0.00 3.46
329 330 0.874390 TCTGAATGTTGGCGTGCTTC 59.126 50.000 0.00 0.00 0.00 3.86
330 331 1.317613 TTCTGAATGTTGGCGTGCTT 58.682 45.000 0.00 0.00 0.00 3.91
331 332 1.317613 TTTCTGAATGTTGGCGTGCT 58.682 45.000 0.00 0.00 0.00 4.40
332 333 2.053627 CTTTTCTGAATGTTGGCGTGC 58.946 47.619 0.00 0.00 0.00 5.34
333 334 2.293122 TCCTTTTCTGAATGTTGGCGTG 59.707 45.455 0.00 0.00 0.00 5.34
334 335 2.554032 CTCCTTTTCTGAATGTTGGCGT 59.446 45.455 0.00 0.00 0.00 5.68
335 336 2.554032 ACTCCTTTTCTGAATGTTGGCG 59.446 45.455 0.00 0.00 0.00 5.69
336 337 3.569701 TCACTCCTTTTCTGAATGTTGGC 59.430 43.478 0.00 0.00 0.00 4.52
337 338 5.772825 TTCACTCCTTTTCTGAATGTTGG 57.227 39.130 0.00 0.00 0.00 3.77
338 339 7.035004 TGTTTTCACTCCTTTTCTGAATGTTG 58.965 34.615 0.00 0.00 0.00 3.33
339 340 7.169158 TGTTTTCACTCCTTTTCTGAATGTT 57.831 32.000 0.00 0.00 0.00 2.71
340 341 6.773976 TGTTTTCACTCCTTTTCTGAATGT 57.226 33.333 0.00 0.00 0.00 2.71
341 342 6.197096 CGTTGTTTTCACTCCTTTTCTGAATG 59.803 38.462 0.00 0.00 0.00 2.67
342 343 6.265577 CGTTGTTTTCACTCCTTTTCTGAAT 58.734 36.000 0.00 0.00 0.00 2.57
343 344 5.636837 CGTTGTTTTCACTCCTTTTCTGAA 58.363 37.500 0.00 0.00 0.00 3.02
344 345 4.438200 GCGTTGTTTTCACTCCTTTTCTGA 60.438 41.667 0.00 0.00 0.00 3.27
345 346 3.791353 GCGTTGTTTTCACTCCTTTTCTG 59.209 43.478 0.00 0.00 0.00 3.02
346 347 3.694566 AGCGTTGTTTTCACTCCTTTTCT 59.305 39.130 0.00 0.00 0.00 2.52
347 348 3.791353 CAGCGTTGTTTTCACTCCTTTTC 59.209 43.478 0.00 0.00 0.00 2.29
348 349 3.769536 CAGCGTTGTTTTCACTCCTTTT 58.230 40.909 0.00 0.00 0.00 2.27
349 350 2.479560 GCAGCGTTGTTTTCACTCCTTT 60.480 45.455 0.00 0.00 0.00 3.11
350 351 1.065551 GCAGCGTTGTTTTCACTCCTT 59.934 47.619 0.00 0.00 0.00 3.36
351 352 0.663153 GCAGCGTTGTTTTCACTCCT 59.337 50.000 0.00 0.00 0.00 3.69
352 353 0.663153 AGCAGCGTTGTTTTCACTCC 59.337 50.000 0.00 0.00 0.00 3.85
353 354 3.813529 ATAGCAGCGTTGTTTTCACTC 57.186 42.857 0.00 0.00 0.00 3.51
354 355 4.378459 GCTAATAGCAGCGTTGTTTTCACT 60.378 41.667 7.49 0.00 41.89 3.41
355 356 3.846335 GCTAATAGCAGCGTTGTTTTCAC 59.154 43.478 7.49 0.00 41.89 3.18
356 357 4.078363 GCTAATAGCAGCGTTGTTTTCA 57.922 40.909 7.49 0.00 41.89 2.69
366 367 2.942105 GGCAGCGCTAATAGCAGC 59.058 61.111 10.99 15.37 42.58 5.25
367 368 2.313172 CCGGCAGCGCTAATAGCAG 61.313 63.158 10.99 10.36 42.58 4.24
368 369 2.280119 CCGGCAGCGCTAATAGCA 60.280 61.111 10.99 0.00 42.58 3.49
369 370 2.024319 CTCCGGCAGCGCTAATAGC 61.024 63.158 10.99 9.69 38.02 2.97
370 371 0.244994 ATCTCCGGCAGCGCTAATAG 59.755 55.000 10.99 3.71 0.00 1.73
371 372 0.679505 AATCTCCGGCAGCGCTAATA 59.320 50.000 10.99 0.00 0.00 0.98
372 373 0.179045 AAATCTCCGGCAGCGCTAAT 60.179 50.000 10.99 0.00 0.00 1.73
373 374 1.089481 CAAATCTCCGGCAGCGCTAA 61.089 55.000 10.99 0.00 0.00 3.09
374 375 1.521457 CAAATCTCCGGCAGCGCTA 60.521 57.895 10.99 0.00 0.00 4.26
375 376 2.821366 CAAATCTCCGGCAGCGCT 60.821 61.111 2.64 2.64 0.00 5.92
376 377 3.880846 CCAAATCTCCGGCAGCGC 61.881 66.667 0.00 0.00 0.00 5.92
382 383 1.208052 TCTCTCTTGCCAAATCTCCGG 59.792 52.381 0.00 0.00 0.00 5.14
383 384 2.680312 TCTCTCTTGCCAAATCTCCG 57.320 50.000 0.00 0.00 0.00 4.63
384 385 3.693578 CCTTTCTCTCTTGCCAAATCTCC 59.306 47.826 0.00 0.00 0.00 3.71
385 386 3.693578 CCCTTTCTCTCTTGCCAAATCTC 59.306 47.826 0.00 0.00 0.00 2.75
386 387 3.694926 CCCTTTCTCTCTTGCCAAATCT 58.305 45.455 0.00 0.00 0.00 2.40
387 388 2.165234 GCCCTTTCTCTCTTGCCAAATC 59.835 50.000 0.00 0.00 0.00 2.17
388 389 2.174360 GCCCTTTCTCTCTTGCCAAAT 58.826 47.619 0.00 0.00 0.00 2.32
389 390 1.620822 GCCCTTTCTCTCTTGCCAAA 58.379 50.000 0.00 0.00 0.00 3.28
390 391 0.606401 CGCCCTTTCTCTCTTGCCAA 60.606 55.000 0.00 0.00 0.00 4.52
391 392 1.003355 CGCCCTTTCTCTCTTGCCA 60.003 57.895 0.00 0.00 0.00 4.92
392 393 1.003233 ACGCCCTTTCTCTCTTGCC 60.003 57.895 0.00 0.00 0.00 4.52
393 394 0.603975 ACACGCCCTTTCTCTCTTGC 60.604 55.000 0.00 0.00 0.00 4.01
394 395 1.884235 AACACGCCCTTTCTCTCTTG 58.116 50.000 0.00 0.00 0.00 3.02
395 396 2.222027 CAAACACGCCCTTTCTCTCTT 58.778 47.619 0.00 0.00 0.00 2.85
396 397 1.543429 CCAAACACGCCCTTTCTCTCT 60.543 52.381 0.00 0.00 0.00 3.10
397 398 0.875059 CCAAACACGCCCTTTCTCTC 59.125 55.000 0.00 0.00 0.00 3.20
398 399 0.182775 ACCAAACACGCCCTTTCTCT 59.817 50.000 0.00 0.00 0.00 3.10
399 400 1.029681 AACCAAACACGCCCTTTCTC 58.970 50.000 0.00 0.00 0.00 2.87
400 401 0.744281 CAACCAAACACGCCCTTTCT 59.256 50.000 0.00 0.00 0.00 2.52
401 402 0.874175 GCAACCAAACACGCCCTTTC 60.874 55.000 0.00 0.00 0.00 2.62
402 403 1.142965 GCAACCAAACACGCCCTTT 59.857 52.632 0.00 0.00 0.00 3.11
423 424 0.608640 GGTCTGGTTGGACTCGATGT 59.391 55.000 0.00 0.00 36.55 3.06
459 460 2.132996 CCAGGCAACCAAACAGGCA 61.133 57.895 0.00 0.00 43.14 4.75
527 529 2.738521 GAGCGTTTCCAGCGAGCA 60.739 61.111 0.00 0.00 40.04 4.26
545 547 1.331138 CTCGCGAGAAACTACCGATCT 59.669 52.381 32.06 0.00 41.32 2.75
622 627 0.819666 GATTTCCATCTCCCGCCACC 60.820 60.000 0.00 0.00 0.00 4.61
623 628 0.181350 AGATTTCCATCTCCCGCCAC 59.819 55.000 0.00 0.00 34.26 5.01
670 675 1.092345 GCGAGTGAAAGGGGATGAGC 61.092 60.000 0.00 0.00 0.00 4.26
675 683 1.671742 GTGAGCGAGTGAAAGGGGA 59.328 57.895 0.00 0.00 0.00 4.81
785 808 2.582498 CTAACGCCGCCTCTTCCG 60.582 66.667 0.00 0.00 0.00 4.30
967 996 0.460722 TTGACGGTTCGTTCAGTGGA 59.539 50.000 0.00 0.00 41.37 4.02
985 1015 3.490419 GCGTCCATAACCTAGTCGACATT 60.490 47.826 19.50 8.80 0.00 2.71
1030 1060 6.579666 AATCACATTAATCAGTGTTGCTGT 57.420 33.333 5.98 0.00 45.23 4.40
1046 1076 0.466189 GACCCATGCCCGAATCACAT 60.466 55.000 0.00 0.00 0.00 3.21
1293 1323 3.773117 GAACATGGCCACTTGTTCG 57.227 52.632 27.86 7.42 45.62 3.95
1296 1326 0.251341 GGAGGAACATGGCCACTTGT 60.251 55.000 8.16 6.94 36.64 3.16
1408 1438 4.343526 TCCTCTAAGCTCCTCAATAGCAAG 59.656 45.833 0.00 0.00 42.62 4.01
1418 1448 4.106179 TGATCATCTCTCCTCTAAGCTCCT 59.894 45.833 0.00 0.00 0.00 3.69
1552 1584 5.820131 TGTGTTAATGCTCAACTTGAACAG 58.180 37.500 1.60 0.00 0.00 3.16
1610 1642 6.239317 GGCAGTGACATGAGTACCATCTATTA 60.239 42.308 0.00 0.00 31.94 0.98
1662 1694 0.178873 AGTGCTTCCTCCCCCTGTAA 60.179 55.000 0.00 0.00 0.00 2.41
1731 1763 1.378911 CCAGCCAGCCAGCACATAA 60.379 57.895 0.00 0.00 34.23 1.90
1784 1816 1.662629 CATCAGGTCGACTCATGTTGC 59.337 52.381 16.46 0.00 0.00 4.17
1808 1840 3.910914 TTGCCGTCGGGGATGTTGG 62.911 63.158 14.38 0.00 38.47 3.77
1932 1964 2.638480 TAAACAGCTCCTGTGCAGTT 57.362 45.000 0.00 0.00 44.62 3.16
1988 2020 1.352017 TCTTCAGAGCTCCAAATGCCA 59.648 47.619 10.93 0.00 0.00 4.92
2131 2163 0.973496 GGCTCGACCTCTTCCTCCTT 60.973 60.000 0.00 0.00 34.51 3.36
2179 2211 2.424601 CGTCATTGTCAAATGCCTCCAT 59.575 45.455 0.00 0.00 42.55 3.41
2332 2374 3.226777 GCTGCTACCAGATCTTCCTCTA 58.773 50.000 0.00 0.00 41.77 2.43
2430 2472 4.168760 CAGCTAGTTAAACAAATGGCAGC 58.831 43.478 0.00 0.00 0.00 5.25
2459 2501 5.411361 GCTTACCACACACAATCTGAACATA 59.589 40.000 0.00 0.00 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.