Multiple sequence alignment - TraesCS4D01G104900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G104900 chr4D 100.000 4306 0 0 1878 6183 83135136 83139441 0.000000e+00 7952.0
1 TraesCS4D01G104900 chr4D 100.000 1478 0 0 1 1478 83133259 83134736 0.000000e+00 2730.0
2 TraesCS4D01G104900 chr4B 93.964 4125 172 35 2023 6109 117769356 117773441 0.000000e+00 6167.0
3 TraesCS4D01G104900 chr4B 87.728 986 45 30 550 1478 117768146 117769112 0.000000e+00 1081.0
4 TraesCS4D01G104900 chr4B 95.327 107 5 0 1915 2021 117769198 117769304 2.960000e-38 171.0
5 TraesCS4D01G104900 chr4B 75.449 334 81 1 11 343 621816165 621816498 1.780000e-35 161.0
6 TraesCS4D01G104900 chr4A 95.059 3036 102 24 2510 5529 495084344 495087347 0.000000e+00 4732.0
7 TraesCS4D01G104900 chr4A 94.093 948 40 9 543 1478 495077775 495078718 0.000000e+00 1426.0
8 TraesCS4D01G104900 chr4A 91.969 386 11 7 5802 6183 495100626 495100995 1.970000e-144 523.0
9 TraesCS4D01G104900 chr4A 92.529 348 26 0 2023 2370 495078924 495079271 3.330000e-137 499.0
10 TraesCS4D01G104900 chr4A 94.697 132 6 1 1888 2019 495078737 495078867 2.920000e-48 204.0
11 TraesCS4D01G104900 chr4A 95.161 124 4 2 2367 2489 495079339 495079461 1.760000e-45 195.0
12 TraesCS4D01G104900 chr7D 85.468 523 58 9 1 506 87523514 87524035 4.240000e-146 529.0
13 TraesCS4D01G104900 chr7D 79.000 100 17 3 181 278 15486509 15486412 1.440000e-06 65.8
14 TraesCS4D01G104900 chr3D 86.880 343 44 1 1 342 344555341 344554999 3.500000e-102 383.0
15 TraesCS4D01G104900 chr5D 88.281 256 29 1 1 255 182713970 182713715 7.790000e-79 305.0
16 TraesCS4D01G104900 chr5D 74.847 489 97 15 39 506 356681285 356681768 1.360000e-46 198.0
17 TraesCS4D01G104900 chr3B 76.737 331 76 1 14 343 35558435 35558105 3.810000e-42 183.0
18 TraesCS4D01G104900 chr3B 76.435 331 77 1 14 343 35625148 35624818 1.770000e-40 178.0
19 TraesCS4D01G104900 chr1D 74.847 163 35 5 181 340 5029091 5029250 1.110000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G104900 chr4D 83133259 83139441 6182 False 5341 7952 100.000000 1 6183 2 chr4D.!!$F1 6182
1 TraesCS4D01G104900 chr4B 117768146 117773441 5295 False 2473 6167 92.339667 550 6109 3 chr4B.!!$F2 5559
2 TraesCS4D01G104900 chr4A 495084344 495087347 3003 False 4732 4732 95.059000 2510 5529 1 chr4A.!!$F1 3019
3 TraesCS4D01G104900 chr4A 495077775 495079461 1686 False 581 1426 94.120000 543 2489 4 chr4A.!!$F3 1946
4 TraesCS4D01G104900 chr7D 87523514 87524035 521 False 529 529 85.468000 1 506 1 chr7D.!!$F1 505

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
171 174 0.034059 CTGCCGGTGTAGATCATCCC 59.966 60.000 1.90 0.00 0.00 3.85 F
493 511 0.320771 TTCTTCGGCTTGACCAGAGC 60.321 55.000 0.00 0.00 39.03 4.09 F
847 883 0.948623 CAGGTCAAACGCCGATGACA 60.949 55.000 22.10 0.00 46.07 3.58 F
1123 1176 1.067821 GCTTCAGTCCATCCTCTACGG 59.932 57.143 0.00 0.00 0.00 4.02 F
2287 2444 0.690762 TACCTTGAACTCCTGTGCCC 59.309 55.000 0.00 0.00 0.00 5.36 F
2303 2460 1.507141 GCCCGCGGAAGGATATTGTG 61.507 60.000 30.73 5.91 0.00 3.33 F
3546 3786 0.178961 ACCCTGGTTTTCCCTCTTGC 60.179 55.000 0.00 0.00 39.73 4.01 F
4683 4923 1.171549 TTCTGCAAAGCATCACGGCA 61.172 50.000 0.00 0.00 38.13 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1208 1261 0.107654 GACCCCAATCAGGAACGGAG 60.108 60.000 0.00 0.00 41.22 4.63 R
1956 2056 1.202222 ACGCAGAAGCAGCATTATTGC 60.202 47.619 1.25 1.25 42.27 3.56 R
2178 2335 1.324383 TTTCCCCAAAGCCTTTCGAC 58.676 50.000 0.00 0.00 0.00 4.20 R
2995 3224 2.483877 TGGTCACGATGAATGAGTTTGC 59.516 45.455 0.00 0.00 0.00 3.68 R
3409 3649 1.378531 AGACAGTTGCGCACAAAAGA 58.621 45.000 11.12 0.00 37.58 2.52 R
4178 4418 3.161866 TGCGGTATAGCACATAGGATCA 58.838 45.455 2.37 0.00 42.92 2.92 R
4946 5186 0.249699 TGCAGTACAGACCAACACCG 60.250 55.000 0.00 0.00 0.00 4.94 R
6083 6345 0.106918 TCGTTTGGCTGGTGGTTTCT 60.107 50.000 0.00 0.00 0.00 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 2.616376 CACCGTGTGAAAGAAACCATCA 59.384 45.455 0.00 0.00 35.23 3.07
42 43 5.278463 CGTGTGAAAGAAACCATCATCCTTT 60.278 40.000 0.00 0.00 0.00 3.11
44 45 5.832595 TGTGAAAGAAACCATCATCCTTTGA 59.167 36.000 0.00 0.00 39.12 2.69
51 53 5.473066 AACCATCATCCTTTGACCAAAAG 57.527 39.130 0.00 0.00 44.27 2.27
61 63 1.314730 TGACCAAAAGGCCTCGAAAC 58.685 50.000 5.23 0.00 0.00 2.78
66 68 2.604614 CCAAAAGGCCTCGAAACGAAAG 60.605 50.000 5.23 0.00 34.74 2.62
144 146 4.796495 GCCGATCCAAGGGCCGTT 62.796 66.667 4.45 4.45 43.64 4.44
148 150 1.887707 GATCCAAGGGCCGTTAGCG 60.888 63.158 10.98 1.64 45.17 4.26
167 170 0.175760 GAAGCTGCCGGTGTAGATCA 59.824 55.000 1.90 0.00 0.00 2.92
171 174 0.034059 CTGCCGGTGTAGATCATCCC 59.966 60.000 1.90 0.00 0.00 3.85
176 179 1.269988 CGGTGTAGATCATCCCAGCAG 60.270 57.143 0.00 0.00 0.00 4.24
190 193 2.293399 CCCAGCAGTTGGTAGTGAAAAC 59.707 50.000 2.14 0.00 46.25 2.43
204 207 3.057734 GTGAAAACGTGGTCGATCTTCT 58.942 45.455 0.00 0.00 40.62 2.85
206 209 2.365408 AAACGTGGTCGATCTTCTCC 57.635 50.000 0.00 0.00 40.62 3.71
217 220 0.905357 ATCTTCTCCAAGGTGGGACG 59.095 55.000 0.00 0.00 38.32 4.79
221 224 2.203523 TCCAAGGTGGGACGTCGA 60.204 61.111 9.92 0.00 38.32 4.20
239 242 1.660052 CGACGTTCGTTCGACCAAGTA 60.660 52.381 8.65 0.00 34.72 2.24
271 274 3.927142 CCGTTGAGGTACATCTCTTTGAC 59.073 47.826 9.22 0.00 34.98 3.18
275 278 4.035278 GAGGTACATCTCTTTGACCTCG 57.965 50.000 0.00 0.00 44.92 4.63
278 281 2.663826 ACATCTCTTTGACCTCGAGC 57.336 50.000 6.99 0.00 0.00 5.03
284 287 2.478134 CTCTTTGACCTCGAGCAAGTTG 59.522 50.000 6.99 0.00 0.00 3.16
286 289 0.468226 TTGACCTCGAGCAAGTTGGT 59.532 50.000 7.41 7.41 0.00 3.67
332 335 2.398554 CCGGTTGATGGCCTCGTTG 61.399 63.158 3.32 0.00 0.00 4.10
333 336 1.671054 CGGTTGATGGCCTCGTTGT 60.671 57.895 3.32 0.00 0.00 3.32
347 350 2.610374 CTCGTTGTTTTTGTCTTCGGGA 59.390 45.455 0.00 0.00 0.00 5.14
351 354 4.496673 CGTTGTTTTTGTCTTCGGGATTGA 60.497 41.667 0.00 0.00 0.00 2.57
353 356 3.948473 TGTTTTTGTCTTCGGGATTGACA 59.052 39.130 0.00 0.00 38.71 3.58
356 359 3.485463 TTGTCTTCGGGATTGACAAGT 57.515 42.857 11.24 0.00 43.15 3.16
362 365 4.041198 TCTTCGGGATTGACAAGTAGGTTT 59.959 41.667 0.00 0.00 0.00 3.27
363 366 3.670625 TCGGGATTGACAAGTAGGTTTG 58.329 45.455 0.00 0.00 0.00 2.93
364 367 2.161609 CGGGATTGACAAGTAGGTTTGC 59.838 50.000 0.00 0.00 0.00 3.68
365 368 3.421844 GGGATTGACAAGTAGGTTTGCT 58.578 45.455 0.00 0.00 0.00 3.91
371 389 2.749621 GACAAGTAGGTTTGCTCATGGG 59.250 50.000 0.00 0.00 0.00 4.00
375 393 2.550699 TAGGTTTGCTCATGGGCCCG 62.551 60.000 19.37 3.22 0.00 6.13
383 401 4.215742 CATGGGCCCGCATGCAAG 62.216 66.667 19.37 9.15 0.00 4.01
392 410 3.972537 GCATGCAAGTCGCGAATG 58.027 55.556 12.06 14.89 46.97 2.67
396 414 0.673333 ATGCAAGTCGCGAATGTCCA 60.673 50.000 12.06 8.53 46.97 4.02
404 422 0.948623 CGCGAATGTCCACCAACTCA 60.949 55.000 0.00 0.00 0.00 3.41
414 432 1.739466 CCACCAACTCATCCATGAACG 59.261 52.381 0.00 0.00 36.18 3.95
416 434 1.271325 ACCAACTCATCCATGAACGCA 60.271 47.619 0.00 0.00 36.18 5.24
426 444 3.346315 TCCATGAACGCAATCTTGTCAT 58.654 40.909 0.00 0.00 0.00 3.06
431 449 4.256110 TGAACGCAATCTTGTCATCATCT 58.744 39.130 0.00 0.00 0.00 2.90
437 455 4.142447 GCAATCTTGTCATCATCTGCTTGT 60.142 41.667 0.00 0.00 0.00 3.16
446 464 1.134007 TCATCTGCTTGTGGGCCATAG 60.134 52.381 10.70 12.01 0.00 2.23
488 506 1.032114 CCCCATTCTTCGGCTTGACC 61.032 60.000 0.00 0.00 0.00 4.02
492 510 2.005451 CATTCTTCGGCTTGACCAGAG 58.995 52.381 0.00 0.00 39.03 3.35
493 511 0.320771 TTCTTCGGCTTGACCAGAGC 60.321 55.000 0.00 0.00 39.03 4.09
499 517 3.997672 GCTTGACCAGAGCCGATAT 57.002 52.632 0.00 0.00 34.06 1.63
500 518 2.246719 GCTTGACCAGAGCCGATATT 57.753 50.000 0.00 0.00 34.06 1.28
501 519 1.869767 GCTTGACCAGAGCCGATATTG 59.130 52.381 0.00 0.00 34.06 1.90
502 520 2.743183 GCTTGACCAGAGCCGATATTGT 60.743 50.000 0.00 0.00 34.06 2.71
503 521 2.602257 TGACCAGAGCCGATATTGTG 57.398 50.000 0.00 0.00 0.00 3.33
504 522 1.831106 TGACCAGAGCCGATATTGTGT 59.169 47.619 0.00 0.00 0.00 3.72
505 523 2.236146 TGACCAGAGCCGATATTGTGTT 59.764 45.455 0.00 0.00 0.00 3.32
506 524 3.449377 TGACCAGAGCCGATATTGTGTTA 59.551 43.478 0.00 0.00 0.00 2.41
507 525 4.051922 GACCAGAGCCGATATTGTGTTAG 58.948 47.826 0.00 0.00 0.00 2.34
508 526 2.802816 CCAGAGCCGATATTGTGTTAGC 59.197 50.000 0.00 0.00 0.00 3.09
509 527 2.802816 CAGAGCCGATATTGTGTTAGCC 59.197 50.000 0.00 0.00 0.00 3.93
510 528 1.792949 GAGCCGATATTGTGTTAGCCG 59.207 52.381 0.00 0.00 0.00 5.52
511 529 1.138266 AGCCGATATTGTGTTAGCCGT 59.862 47.619 0.00 0.00 0.00 5.68
512 530 2.363038 AGCCGATATTGTGTTAGCCGTA 59.637 45.455 0.00 0.00 0.00 4.02
513 531 3.125316 GCCGATATTGTGTTAGCCGTAA 58.875 45.455 0.00 0.00 0.00 3.18
514 532 3.183775 GCCGATATTGTGTTAGCCGTAAG 59.816 47.826 0.00 0.00 0.00 2.34
531 549 4.798574 CGTAAGGGTTTAGTCTTGTACGT 58.201 43.478 0.00 0.00 0.00 3.57
532 550 5.222631 CGTAAGGGTTTAGTCTTGTACGTT 58.777 41.667 0.00 0.00 0.00 3.99
533 551 5.691754 CGTAAGGGTTTAGTCTTGTACGTTT 59.308 40.000 0.00 0.00 0.00 3.60
534 552 6.129088 CGTAAGGGTTTAGTCTTGTACGTTTC 60.129 42.308 0.00 0.00 0.00 2.78
535 553 5.280654 AGGGTTTAGTCTTGTACGTTTCA 57.719 39.130 0.00 0.00 0.00 2.69
536 554 5.861727 AGGGTTTAGTCTTGTACGTTTCAT 58.138 37.500 0.00 0.00 0.00 2.57
537 555 5.930569 AGGGTTTAGTCTTGTACGTTTCATC 59.069 40.000 0.00 0.00 0.00 2.92
538 556 5.930569 GGGTTTAGTCTTGTACGTTTCATCT 59.069 40.000 0.00 0.00 0.00 2.90
539 557 6.426025 GGGTTTAGTCTTGTACGTTTCATCTT 59.574 38.462 0.00 0.00 0.00 2.40
540 558 7.599998 GGGTTTAGTCTTGTACGTTTCATCTTA 59.400 37.037 0.00 0.00 0.00 2.10
541 559 9.148104 GGTTTAGTCTTGTACGTTTCATCTTAT 57.852 33.333 0.00 0.00 0.00 1.73
544 562 9.701098 TTAGTCTTGTACGTTTCATCTTATTGT 57.299 29.630 0.00 0.00 0.00 2.71
545 563 8.240883 AGTCTTGTACGTTTCATCTTATTGTC 57.759 34.615 0.00 0.00 0.00 3.18
546 564 8.088981 AGTCTTGTACGTTTCATCTTATTGTCT 58.911 33.333 0.00 0.00 0.00 3.41
547 565 8.709646 GTCTTGTACGTTTCATCTTATTGTCTT 58.290 33.333 0.00 0.00 0.00 3.01
548 566 8.922676 TCTTGTACGTTTCATCTTATTGTCTTC 58.077 33.333 0.00 0.00 0.00 2.87
559 577 6.182039 TCTTATTGTCTTCCTGCAAAATCG 57.818 37.500 0.00 0.00 0.00 3.34
592 610 2.673368 GGTGCGAGAAAGATTCGTCATT 59.327 45.455 0.00 0.00 40.08 2.57
593 611 3.242123 GGTGCGAGAAAGATTCGTCATTC 60.242 47.826 0.00 0.00 40.08 2.67
594 612 3.367932 GTGCGAGAAAGATTCGTCATTCA 59.632 43.478 0.00 0.00 40.08 2.57
653 675 1.714899 CTCCCGCGTTATTGCCAAGG 61.715 60.000 4.92 0.00 0.00 3.61
709 731 3.241530 TGACTCTTGCCACCGCCT 61.242 61.111 0.00 0.00 0.00 5.52
847 883 0.948623 CAGGTCAAACGCCGATGACA 60.949 55.000 22.10 0.00 46.07 3.58
872 912 2.284921 CCCAGCCCAGAGTCCAGA 60.285 66.667 0.00 0.00 0.00 3.86
878 918 3.495806 CCAGCCCAGAGTCCAGAATATTC 60.496 52.174 7.41 7.41 0.00 1.75
880 920 2.708325 GCCCAGAGTCCAGAATATTCCT 59.292 50.000 11.92 1.87 0.00 3.36
890 930 6.071984 GTCCAGAATATTCCTAGAGGACAGA 58.928 44.000 23.00 4.71 45.39 3.41
891 931 6.208599 GTCCAGAATATTCCTAGAGGACAGAG 59.791 46.154 23.00 2.15 45.39 3.35
1123 1176 1.067821 GCTTCAGTCCATCCTCTACGG 59.932 57.143 0.00 0.00 0.00 4.02
1200 1253 2.172483 CTCCCGAGTGGAAGTGGTGG 62.172 65.000 0.00 0.00 44.57 4.61
1208 1261 1.671379 GGAAGTGGTGGCGAGTTCC 60.671 63.158 2.79 2.79 35.27 3.62
1363 1427 7.278868 CCTCTAGTTGGCAGTATTTCTTTAGTG 59.721 40.741 0.00 0.00 0.00 2.74
1915 2015 6.826231 TGATTCGGCACTCTGGATTATTTTAA 59.174 34.615 0.00 0.00 0.00 1.52
2050 2207 1.740025 GCCAGATCAAGGGAAACGAAG 59.260 52.381 6.38 0.00 0.00 3.79
2062 2219 2.616842 GGAAACGAAGAAGCCAGACAAA 59.383 45.455 0.00 0.00 0.00 2.83
2178 2335 7.189693 TGTTACTGAAATAGTTGCTGACAAG 57.810 36.000 0.00 0.00 40.89 3.16
2287 2444 0.690762 TACCTTGAACTCCTGTGCCC 59.309 55.000 0.00 0.00 0.00 5.36
2303 2460 1.507141 GCCCGCGGAAGGATATTGTG 61.507 60.000 30.73 5.91 0.00 3.33
2313 2470 5.065218 CGGAAGGATATTGTGAAACTCAAGG 59.935 44.000 0.00 0.00 38.04 3.61
2314 2471 6.180472 GGAAGGATATTGTGAAACTCAAGGA 58.820 40.000 0.00 0.00 38.04 3.36
2496 2724 5.997746 AGTATATTTGTGCTTATGTCCGCAT 59.002 36.000 0.00 0.00 38.56 4.73
2505 2733 3.489738 GCTTATGTCCGCATTGAGCATTT 60.490 43.478 9.29 0.00 46.13 2.32
2510 2738 3.126858 TGTCCGCATTGAGCATTTAACTC 59.873 43.478 0.00 0.00 46.13 3.01
2516 2744 5.449113 CGCATTGAGCATTTAACTCGTTAAG 59.551 40.000 2.89 0.00 46.13 1.85
2750 2979 6.183360 TGCGCGATAATTTTGATCCTGATATC 60.183 38.462 12.10 0.00 0.00 1.63
2995 3224 8.282455 TCACTAGTAGTTCTTCAATACCTGAG 57.718 38.462 0.00 0.00 34.81 3.35
3060 3289 6.014156 GCCAGGACCATAGAGTTAATATGTCT 60.014 42.308 0.00 0.00 0.00 3.41
3190 3420 9.237187 TCAGAACATTACCAATTGTAGCATTTA 57.763 29.630 4.43 0.00 0.00 1.40
3195 3425 8.965819 ACATTACCAATTGTAGCATTTATGTGA 58.034 29.630 4.43 0.00 27.61 3.58
3253 3491 5.263599 TGCATATTTGTCCAGTTCCTTGAT 58.736 37.500 0.00 0.00 0.00 2.57
3254 3492 5.716228 TGCATATTTGTCCAGTTCCTTGATT 59.284 36.000 0.00 0.00 0.00 2.57
3255 3493 6.211184 TGCATATTTGTCCAGTTCCTTGATTT 59.789 34.615 0.00 0.00 0.00 2.17
3256 3494 7.099120 GCATATTTGTCCAGTTCCTTGATTTT 58.901 34.615 0.00 0.00 0.00 1.82
3257 3495 7.603784 GCATATTTGTCCAGTTCCTTGATTTTT 59.396 33.333 0.00 0.00 0.00 1.94
3298 3536 5.003160 CCTGATGTGACTAATTGGTTGTGA 58.997 41.667 0.00 0.00 0.00 3.58
3304 3542 7.164230 TGTGACTAATTGGTTGTGACTTTTT 57.836 32.000 0.00 0.00 0.00 1.94
3316 3554 6.148645 GGTTGTGACTTTTTGTTGGTTTTCAT 59.851 34.615 0.00 0.00 0.00 2.57
3317 3555 7.308288 GGTTGTGACTTTTTGTTGGTTTTCATT 60.308 33.333 0.00 0.00 0.00 2.57
3323 3561 7.398829 ACTTTTTGTTGGTTTTCATTAGGGTT 58.601 30.769 0.00 0.00 0.00 4.11
3409 3649 2.035066 GCAAGAAACCAGCAATGACTGT 59.965 45.455 4.52 0.00 35.83 3.55
3434 3674 1.002576 TGTGCGCAACTGTCTTGAATG 60.003 47.619 14.00 0.00 0.00 2.67
3454 3694 3.544684 TGCTTGCATAATGGACTACTGG 58.455 45.455 0.00 0.00 0.00 4.00
3522 3762 4.462834 AGTTATGAGGTGATGACGAGTTGA 59.537 41.667 0.00 0.00 0.00 3.18
3546 3786 0.178961 ACCCTGGTTTTCCCTCTTGC 60.179 55.000 0.00 0.00 39.73 4.01
3599 3839 5.559148 AACATTTTCCCATGTTGCCTTAA 57.441 34.783 0.00 0.00 44.19 1.85
3680 3920 4.022068 TCTCTGGTTGATGAAATTGTTGGC 60.022 41.667 0.00 0.00 0.00 4.52
3732 3972 4.456911 CAGGTCTTTATTGAAGCTGCAGAA 59.543 41.667 20.43 2.36 35.24 3.02
3860 4100 5.833131 CCCATTGTAATACTGGCAGGTAAAT 59.167 40.000 20.34 6.84 0.00 1.40
3867 4107 7.998383 TGTAATACTGGCAGGTAAATTCATCAT 59.002 33.333 20.34 0.00 0.00 2.45
4045 4285 4.159879 ACTCGTCCATTTAACCAGGTAGAG 59.840 45.833 0.00 0.00 35.14 2.43
4053 4293 7.993183 TCCATTTAACCAGGTAGAGATTCATTC 59.007 37.037 0.00 0.00 0.00 2.67
4178 4418 7.715249 AGCATATTAACGTCTTTGACATACCAT 59.285 33.333 0.00 0.00 32.09 3.55
4197 4437 4.160439 ACCATGATCCTATGTGCTATACCG 59.840 45.833 0.00 0.00 0.00 4.02
4254 4494 4.974645 ATTTCACCAACTGTCTAGGTCA 57.025 40.909 0.00 0.00 32.15 4.02
4328 4568 6.877322 TGTTTGCTACCTATTCTTTACCACTC 59.123 38.462 0.00 0.00 0.00 3.51
4330 4570 5.974108 TGCTACCTATTCTTTACCACTCAC 58.026 41.667 0.00 0.00 0.00 3.51
4589 4829 7.630242 ATCAACTGAACACCAAATATACCTG 57.370 36.000 0.00 0.00 0.00 4.00
4613 4853 5.895636 TGCTGACTGTATTTTTGGGTATG 57.104 39.130 0.00 0.00 0.00 2.39
4683 4923 1.171549 TTCTGCAAAGCATCACGGCA 61.172 50.000 0.00 0.00 38.13 5.69
4919 5159 9.464714 GTATGTTCTATATCACCACACTACTTG 57.535 37.037 0.00 0.00 0.00 3.16
4935 5175 5.343058 CACTACTTGCATGTTCCATTTTTCG 59.657 40.000 10.85 0.00 0.00 3.46
4946 5186 6.378582 TGTTCCATTTTTCGTATGCTCTTTC 58.621 36.000 0.00 0.00 0.00 2.62
5061 5308 4.311606 TCGACATCAAAGGTTTCATCGAA 58.688 39.130 0.00 0.00 34.68 3.71
5241 5490 7.286546 TGAGGATGAGTGTTTGTTATCCAAAAA 59.713 33.333 0.00 0.00 44.36 1.94
5242 5491 7.661040 AGGATGAGTGTTTGTTATCCAAAAAG 58.339 34.615 0.00 0.00 44.36 2.27
5243 5492 7.287696 AGGATGAGTGTTTGTTATCCAAAAAGT 59.712 33.333 0.00 0.00 44.36 2.66
5309 5561 6.707440 TTTCTAGCAATGAACCAAAACTCA 57.293 33.333 0.00 0.00 0.00 3.41
5333 5585 1.895798 TGAGATGGAAGACGAGCAGTT 59.104 47.619 0.00 0.00 0.00 3.16
5476 5729 9.624697 GTTTCACTCAGCATTGTGATTATTTAA 57.375 29.630 6.53 0.00 41.93 1.52
5537 5790 5.592054 TCCTCGTTATGCAGTCTATGAAAG 58.408 41.667 0.00 0.00 0.00 2.62
5542 5795 6.649141 TCGTTATGCAGTCTATGAAAGTTTGT 59.351 34.615 0.00 0.00 0.00 2.83
5566 5819 8.868916 TGTAAGTTTGAACTTTGAATCAAAAGC 58.131 29.630 13.71 3.09 46.52 3.51
5572 5825 3.578688 ACTTTGAATCAAAAGCATCGGC 58.421 40.909 9.85 0.00 40.20 5.54
5574 5827 1.543607 TGAATCAAAAGCATCGGCCA 58.456 45.000 2.24 0.00 42.56 5.36
5575 5828 1.891811 TGAATCAAAAGCATCGGCCAA 59.108 42.857 2.24 0.00 42.56 4.52
5590 5844 5.957842 TCGGCCAATAACATATGGAATTC 57.042 39.130 7.80 0.00 39.12 2.17
5635 5889 6.427853 TGAGATAAAGGTGTTCTTGACATGTG 59.572 38.462 1.15 0.00 41.10 3.21
5641 5895 4.826733 AGGTGTTCTTGACATGTGCATTTA 59.173 37.500 1.15 0.00 41.10 1.40
5644 5898 5.626543 GTGTTCTTGACATGTGCATTTACAG 59.373 40.000 1.15 0.00 41.10 2.74
5668 5922 5.594926 CATTTCTCCAAATGCATCTTACCC 58.405 41.667 0.00 0.00 41.89 3.69
5676 5930 1.855295 TGCATCTTACCCGGTGTCTA 58.145 50.000 0.00 0.00 0.00 2.59
5692 5946 4.622740 GGTGTCTAAAGCATGCAACATTTC 59.377 41.667 21.98 5.19 0.00 2.17
5696 5950 0.317799 AAGCATGCAACATTTCCGCA 59.682 45.000 21.98 0.00 40.50 5.69
5714 5968 1.003718 ACTAGTTCGCCACCCTTGC 60.004 57.895 0.00 0.00 0.00 4.01
5733 5987 2.029380 TGCGTCAGAAATCTTTCTCGGA 60.029 45.455 12.71 8.89 45.23 4.55
5739 5993 4.711846 TCAGAAATCTTTCTCGGATCCTCA 59.288 41.667 10.75 0.00 45.23 3.86
5747 6001 5.187772 TCTTTCTCGGATCCTCAATCTTCAA 59.812 40.000 10.75 0.00 34.56 2.69
5800 6054 7.233144 TCCATTTCTTCATTTGGAACATCTTCA 59.767 33.333 0.00 0.00 39.30 3.02
5801 6055 7.874016 CCATTTCTTCATTTGGAACATCTTCAA 59.126 33.333 0.00 0.00 39.30 2.69
5802 6056 9.431887 CATTTCTTCATTTGGAACATCTTCAAT 57.568 29.630 0.00 0.00 39.30 2.57
5803 6057 9.649167 ATTTCTTCATTTGGAACATCTTCAATC 57.351 29.630 0.00 0.00 39.30 2.67
5804 6058 8.413309 TTCTTCATTTGGAACATCTTCAATCT 57.587 30.769 0.00 0.00 39.30 2.40
5806 6060 8.517878 TCTTCATTTGGAACATCTTCAATCTTC 58.482 33.333 0.00 0.00 39.30 2.87
5807 6061 8.413309 TTCATTTGGAACATCTTCAATCTTCT 57.587 30.769 0.00 0.00 39.30 2.85
5808 6062 7.823665 TCATTTGGAACATCTTCAATCTTCTG 58.176 34.615 0.00 0.00 39.30 3.02
5809 6063 6.579666 TTTGGAACATCTTCAATCTTCTGG 57.420 37.500 0.00 0.00 39.30 3.86
5810 6064 5.503634 TGGAACATCTTCAATCTTCTGGA 57.496 39.130 0.00 0.00 0.00 3.86
5811 6065 5.248640 TGGAACATCTTCAATCTTCTGGAC 58.751 41.667 0.00 0.00 0.00 4.02
5812 6066 5.013495 TGGAACATCTTCAATCTTCTGGACT 59.987 40.000 0.00 0.00 0.00 3.85
5813 6067 6.213397 TGGAACATCTTCAATCTTCTGGACTA 59.787 38.462 0.00 0.00 0.00 2.59
5814 6068 6.536941 GGAACATCTTCAATCTTCTGGACTAC 59.463 42.308 0.00 0.00 0.00 2.73
5838 6092 7.758495 ACACTTTTTGGCTATATTCTTTACCG 58.242 34.615 0.00 0.00 0.00 4.02
5872 6126 1.098050 CAGCCTATTCCAACTGTGCC 58.902 55.000 0.00 0.00 0.00 5.01
5873 6127 0.995024 AGCCTATTCCAACTGTGCCT 59.005 50.000 0.00 0.00 0.00 4.75
5874 6128 1.098050 GCCTATTCCAACTGTGCCTG 58.902 55.000 0.00 0.00 0.00 4.85
5875 6129 1.755179 CCTATTCCAACTGTGCCTGG 58.245 55.000 0.00 0.00 0.00 4.45
5876 6130 1.683011 CCTATTCCAACTGTGCCTGGG 60.683 57.143 0.00 0.00 33.19 4.45
5877 6131 0.323360 TATTCCAACTGTGCCTGGGC 60.323 55.000 4.43 4.43 42.35 5.36
5878 6132 3.690624 TATTCCAACTGTGCCTGGGCC 62.691 57.143 9.28 0.00 41.09 5.80
5952 6214 0.896226 GCGAGGTGAGTCTTTACCCT 59.104 55.000 4.16 0.00 37.70 4.34
5954 6216 1.477295 CGAGGTGAGTCTTTACCCTCC 59.523 57.143 0.00 0.00 38.79 4.30
5955 6217 2.537143 GAGGTGAGTCTTTACCCTCCA 58.463 52.381 0.00 0.00 37.70 3.86
5957 6219 3.108376 AGGTGAGTCTTTACCCTCCATC 58.892 50.000 4.16 0.00 37.70 3.51
5958 6220 3.108376 GGTGAGTCTTTACCCTCCATCT 58.892 50.000 0.00 0.00 0.00 2.90
5959 6221 3.118592 GGTGAGTCTTTACCCTCCATCTG 60.119 52.174 0.00 0.00 0.00 2.90
5960 6222 3.769844 GTGAGTCTTTACCCTCCATCTGA 59.230 47.826 0.00 0.00 0.00 3.27
5961 6223 4.407296 GTGAGTCTTTACCCTCCATCTGAT 59.593 45.833 0.00 0.00 0.00 2.90
5962 6224 4.406972 TGAGTCTTTACCCTCCATCTGATG 59.593 45.833 10.71 10.71 0.00 3.07
5963 6225 3.135530 AGTCTTTACCCTCCATCTGATGC 59.864 47.826 12.17 0.00 0.00 3.91
5964 6226 2.439507 TCTTTACCCTCCATCTGATGCC 59.560 50.000 12.17 0.00 0.00 4.40
5965 6227 2.196742 TTACCCTCCATCTGATGCCT 57.803 50.000 12.17 0.00 0.00 4.75
5966 6228 1.427809 TACCCTCCATCTGATGCCTG 58.572 55.000 12.17 4.34 0.00 4.85
5967 6229 1.351080 ACCCTCCATCTGATGCCTGG 61.351 60.000 12.17 12.63 0.00 4.45
5968 6230 1.351080 CCCTCCATCTGATGCCTGGT 61.351 60.000 12.17 0.00 0.00 4.00
5969 6231 0.179026 CCTCCATCTGATGCCTGGTG 60.179 60.000 12.17 1.54 0.00 4.17
6034 6296 1.745232 AGCAAACAAGACGACCAACA 58.255 45.000 0.00 0.00 0.00 3.33
6051 6313 4.464597 ACCAACACTGAAAACAAAAGGCTA 59.535 37.500 0.00 0.00 0.00 3.93
6076 6338 4.062293 CAAGAACAACTATCCCAACGACA 58.938 43.478 0.00 0.00 0.00 4.35
6083 6345 7.513371 ACAACTATCCCAACGACAAATTTTA 57.487 32.000 0.00 0.00 0.00 1.52
6093 6355 5.838531 ACGACAAATTTTAGAAACCACCA 57.161 34.783 0.00 0.00 0.00 4.17
6109 6371 1.464608 CACCAGCCAAACGACACTATG 59.535 52.381 0.00 0.00 0.00 2.23
6110 6372 0.447801 CCAGCCAAACGACACTATGC 59.552 55.000 0.00 0.00 0.00 3.14
6111 6373 0.447801 CAGCCAAACGACACTATGCC 59.552 55.000 0.00 0.00 0.00 4.40
6112 6374 0.676782 AGCCAAACGACACTATGCCC 60.677 55.000 0.00 0.00 0.00 5.36
6113 6375 0.958382 GCCAAACGACACTATGCCCA 60.958 55.000 0.00 0.00 0.00 5.36
6114 6376 0.802494 CCAAACGACACTATGCCCAC 59.198 55.000 0.00 0.00 0.00 4.61
6115 6377 0.442310 CAAACGACACTATGCCCACG 59.558 55.000 0.00 0.00 0.00 4.94
6116 6378 1.296056 AAACGACACTATGCCCACGC 61.296 55.000 0.00 0.00 0.00 5.34
6117 6379 2.890474 CGACACTATGCCCACGCC 60.890 66.667 0.00 0.00 0.00 5.68
6118 6380 2.513897 GACACTATGCCCACGCCC 60.514 66.667 0.00 0.00 0.00 6.13
6119 6381 3.009115 ACACTATGCCCACGCCCT 61.009 61.111 0.00 0.00 0.00 5.19
6120 6382 1.682451 GACACTATGCCCACGCCCTA 61.682 60.000 0.00 0.00 0.00 3.53
6121 6383 1.069765 CACTATGCCCACGCCCTAG 59.930 63.158 0.00 0.00 0.00 3.02
6122 6384 2.140792 ACTATGCCCACGCCCTAGG 61.141 63.158 0.06 0.06 0.00 3.02
6133 6395 3.894638 CCCTAGGGCCCCTGCATG 61.895 72.222 21.43 0.67 40.13 4.06
6134 6396 2.773918 CCTAGGGCCCCTGCATGA 60.774 66.667 21.43 0.00 40.13 3.07
6135 6397 2.158810 CCTAGGGCCCCTGCATGAT 61.159 63.158 21.43 0.00 40.13 2.45
6136 6398 1.723128 CCTAGGGCCCCTGCATGATT 61.723 60.000 21.43 0.00 40.13 2.57
6137 6399 1.067295 CTAGGGCCCCTGCATGATTA 58.933 55.000 21.43 0.00 40.13 1.75
6138 6400 1.425066 CTAGGGCCCCTGCATGATTAA 59.575 52.381 21.43 0.00 40.13 1.40
6139 6401 0.636101 AGGGCCCCTGCATGATTAAA 59.364 50.000 21.43 0.00 40.13 1.52
6140 6402 1.221265 AGGGCCCCTGCATGATTAAAT 59.779 47.619 21.43 0.00 40.13 1.40
6141 6403 2.049372 GGGCCCCTGCATGATTAAATT 58.951 47.619 12.23 0.00 40.13 1.82
6142 6404 3.116784 AGGGCCCCTGCATGATTAAATTA 60.117 43.478 21.43 0.00 40.13 1.40
6143 6405 3.645687 GGGCCCCTGCATGATTAAATTAA 59.354 43.478 12.23 0.00 40.13 1.40
6144 6406 4.503123 GGGCCCCTGCATGATTAAATTAAC 60.503 45.833 12.23 0.00 40.13 2.01
6145 6407 4.100808 GGCCCCTGCATGATTAAATTAACA 59.899 41.667 0.00 0.00 40.13 2.41
6146 6408 5.291971 GCCCCTGCATGATTAAATTAACAG 58.708 41.667 0.00 0.00 37.47 3.16
6147 6409 5.068987 GCCCCTGCATGATTAAATTAACAGA 59.931 40.000 0.00 0.00 37.47 3.41
6148 6410 6.239402 GCCCCTGCATGATTAAATTAACAGAT 60.239 38.462 0.00 0.00 37.47 2.90
6149 6411 7.687592 GCCCCTGCATGATTAAATTAACAGATT 60.688 37.037 0.00 0.00 37.47 2.40
6150 6412 8.206189 CCCCTGCATGATTAAATTAACAGATTT 58.794 33.333 0.00 0.00 33.95 2.17
6160 6422 9.901172 ATTAAATTAACAGATTTAGAGGACGGT 57.099 29.630 0.00 0.00 34.13 4.83
6161 6423 9.729281 TTAAATTAACAGATTTAGAGGACGGTT 57.271 29.630 0.00 0.00 34.13 4.44
6162 6424 8.631480 AAATTAACAGATTTAGAGGACGGTTT 57.369 30.769 0.00 0.00 0.00 3.27
6163 6425 7.611213 ATTAACAGATTTAGAGGACGGTTTG 57.389 36.000 0.00 0.00 0.00 2.93
6164 6426 3.939066 ACAGATTTAGAGGACGGTTTGG 58.061 45.455 0.00 0.00 0.00 3.28
6165 6427 3.581332 ACAGATTTAGAGGACGGTTTGGA 59.419 43.478 0.00 0.00 0.00 3.53
6166 6428 4.225267 ACAGATTTAGAGGACGGTTTGGAT 59.775 41.667 0.00 0.00 0.00 3.41
6167 6429 5.424252 ACAGATTTAGAGGACGGTTTGGATA 59.576 40.000 0.00 0.00 0.00 2.59
6168 6430 5.753921 CAGATTTAGAGGACGGTTTGGATAC 59.246 44.000 0.00 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 1.483004 TCTTTCACACGGTGGAGACAA 59.517 47.619 13.48 6.67 46.06 3.18
9 10 1.116308 TCTTTCACACGGTGGAGACA 58.884 50.000 13.48 2.66 33.87 3.41
44 45 0.179040 TCGTTTCGAGGCCTTTTGGT 60.179 50.000 6.77 0.00 42.99 3.67
51 53 2.474712 CGCTTTCGTTTCGAGGCC 59.525 61.111 0.00 0.00 37.14 5.19
57 59 0.387239 ATGGCAAGCGCTTTCGTTTC 60.387 50.000 22.51 3.18 37.02 2.78
61 63 0.931662 GCATATGGCAAGCGCTTTCG 60.932 55.000 22.51 11.87 43.97 3.46
87 89 0.901827 TGCTCCTGGATCTAAACGCA 59.098 50.000 0.00 0.00 0.00 5.24
93 95 0.470833 GCCCTCTGCTCCTGGATCTA 60.471 60.000 0.00 0.00 36.87 1.98
113 115 0.537188 ATCGGCCATATCGGATCACC 59.463 55.000 2.24 0.00 36.56 4.02
129 131 1.887707 GCTAACGGCCCTTGGATCG 60.888 63.158 0.00 0.00 34.27 3.69
144 146 2.279502 CTACACCGGCAGCTTCGCTA 62.280 60.000 0.00 0.00 36.40 4.26
148 150 0.175760 TGATCTACACCGGCAGCTTC 59.824 55.000 0.00 0.00 0.00 3.86
159 161 2.171237 CCAACTGCTGGGATGATCTACA 59.829 50.000 0.00 0.00 42.17 2.74
160 162 2.843701 CCAACTGCTGGGATGATCTAC 58.156 52.381 0.00 0.00 42.17 2.59
171 174 2.612212 ACGTTTTCACTACCAACTGCTG 59.388 45.455 0.00 0.00 0.00 4.41
176 179 2.033492 CGACCACGTTTTCACTACCAAC 60.033 50.000 0.00 0.00 34.56 3.77
190 193 1.469940 CCTTGGAGAAGATCGACCACG 60.470 57.143 0.00 0.00 41.26 4.94
204 207 2.203523 TCGACGTCCCACCTTGGA 60.204 61.111 10.58 0.00 40.96 3.53
206 209 2.430244 CGTCGACGTCCCACCTTG 60.430 66.667 29.08 0.00 34.11 3.61
221 224 2.712057 ATACTTGGTCGAACGAACGT 57.288 45.000 7.71 3.37 33.87 3.99
239 242 1.449601 CCTCAACGGCCGCAAGTAT 60.450 57.895 28.58 0.00 0.00 2.12
271 274 1.266989 GGAAAACCAACTTGCTCGAGG 59.733 52.381 15.58 0.00 0.00 4.63
275 278 1.266989 CGGAGGAAAACCAACTTGCTC 59.733 52.381 0.00 0.00 39.71 4.26
278 281 3.490249 GGTTTCGGAGGAAAACCAACTTG 60.490 47.826 11.80 0.00 42.77 3.16
286 289 1.324383 GGCAAGGTTTCGGAGGAAAA 58.676 50.000 0.00 0.00 43.39 2.29
332 335 4.561735 TGTCAATCCCGAAGACAAAAAC 57.438 40.909 0.00 0.00 39.15 2.43
347 350 4.460382 CCATGAGCAAACCTACTTGTCAAT 59.540 41.667 0.00 0.00 0.00 2.57
351 354 2.795329 CCCATGAGCAAACCTACTTGT 58.205 47.619 0.00 0.00 0.00 3.16
353 356 1.616994 GGCCCATGAGCAAACCTACTT 60.617 52.381 0.27 0.00 0.00 2.24
356 359 1.306296 GGGCCCATGAGCAAACCTA 59.694 57.895 19.95 0.00 0.00 3.08
365 368 4.755507 TTGCATGCGGGCCCATGA 62.756 61.111 28.35 16.00 44.12 3.07
375 393 0.858961 GACATTCGCGACTTGCATGC 60.859 55.000 9.15 11.82 46.97 4.06
383 401 0.949105 AGTTGGTGGACATTCGCGAC 60.949 55.000 9.15 0.00 0.00 5.19
389 407 3.010472 TCATGGATGAGTTGGTGGACATT 59.990 43.478 0.00 0.00 32.11 2.71
392 410 2.749621 GTTCATGGATGAGTTGGTGGAC 59.250 50.000 0.00 0.00 38.19 4.02
396 414 1.271325 TGCGTTCATGGATGAGTTGGT 60.271 47.619 0.00 0.00 38.19 3.67
404 422 3.346315 TGACAAGATTGCGTTCATGGAT 58.654 40.909 0.00 0.00 0.00 3.41
414 432 4.142447 ACAAGCAGATGATGACAAGATTGC 60.142 41.667 0.00 0.00 31.32 3.56
416 434 4.398358 CCACAAGCAGATGATGACAAGATT 59.602 41.667 0.00 0.00 0.00 2.40
426 444 0.918258 TATGGCCCACAAGCAGATGA 59.082 50.000 0.00 0.00 0.00 2.92
431 449 0.322456 GTGTCTATGGCCCACAAGCA 60.322 55.000 0.00 0.00 0.00 3.91
437 455 3.792736 GCGGGTGTCTATGGCCCA 61.793 66.667 0.00 0.00 42.44 5.36
468 486 1.032114 GTCAAGCCGAAGAATGGGGG 61.032 60.000 0.00 0.00 0.00 5.40
470 488 0.322456 TGGTCAAGCCGAAGAATGGG 60.322 55.000 0.00 0.00 41.21 4.00
488 506 2.802816 GGCTAACACAATATCGGCTCTG 59.197 50.000 0.00 0.00 0.00 3.35
492 510 1.578583 ACGGCTAACACAATATCGGC 58.421 50.000 0.00 0.00 0.00 5.54
493 511 3.739300 CCTTACGGCTAACACAATATCGG 59.261 47.826 0.00 0.00 0.00 4.18
494 512 3.739300 CCCTTACGGCTAACACAATATCG 59.261 47.826 0.00 0.00 0.00 2.92
495 513 4.700700 ACCCTTACGGCTAACACAATATC 58.299 43.478 0.00 0.00 33.26 1.63
496 514 4.765813 ACCCTTACGGCTAACACAATAT 57.234 40.909 0.00 0.00 33.26 1.28
497 515 4.556592 AACCCTTACGGCTAACACAATA 57.443 40.909 0.00 0.00 33.26 1.90
498 516 3.428413 AACCCTTACGGCTAACACAAT 57.572 42.857 0.00 0.00 33.26 2.71
499 517 2.934886 AACCCTTACGGCTAACACAA 57.065 45.000 0.00 0.00 33.26 3.33
500 518 2.934886 AAACCCTTACGGCTAACACA 57.065 45.000 0.00 0.00 33.26 3.72
501 519 3.928992 GACTAAACCCTTACGGCTAACAC 59.071 47.826 0.00 0.00 33.26 3.32
502 520 3.834231 AGACTAAACCCTTACGGCTAACA 59.166 43.478 0.00 0.00 33.26 2.41
503 521 4.462508 AGACTAAACCCTTACGGCTAAC 57.537 45.455 0.00 0.00 33.26 2.34
504 522 4.284234 ACAAGACTAAACCCTTACGGCTAA 59.716 41.667 0.00 0.00 33.26 3.09
505 523 3.834231 ACAAGACTAAACCCTTACGGCTA 59.166 43.478 0.00 0.00 33.26 3.93
506 524 2.636403 ACAAGACTAAACCCTTACGGCT 59.364 45.455 0.00 0.00 33.26 5.52
507 525 3.049708 ACAAGACTAAACCCTTACGGC 57.950 47.619 0.00 0.00 33.26 5.68
508 526 4.168760 CGTACAAGACTAAACCCTTACGG 58.831 47.826 0.00 0.00 37.81 4.02
509 527 4.798574 ACGTACAAGACTAAACCCTTACG 58.201 43.478 0.00 0.00 33.24 3.18
510 528 6.701400 TGAAACGTACAAGACTAAACCCTTAC 59.299 38.462 0.00 0.00 0.00 2.34
511 529 6.815089 TGAAACGTACAAGACTAAACCCTTA 58.185 36.000 0.00 0.00 0.00 2.69
512 530 5.673514 TGAAACGTACAAGACTAAACCCTT 58.326 37.500 0.00 0.00 0.00 3.95
513 531 5.280654 TGAAACGTACAAGACTAAACCCT 57.719 39.130 0.00 0.00 0.00 4.34
514 532 5.930569 AGATGAAACGTACAAGACTAAACCC 59.069 40.000 0.00 0.00 0.00 4.11
515 533 7.417496 AAGATGAAACGTACAAGACTAAACC 57.583 36.000 0.00 0.00 0.00 3.27
518 536 9.701098 ACAATAAGATGAAACGTACAAGACTAA 57.299 29.630 0.00 0.00 0.00 2.24
519 537 9.350357 GACAATAAGATGAAACGTACAAGACTA 57.650 33.333 0.00 0.00 0.00 2.59
520 538 8.088981 AGACAATAAGATGAAACGTACAAGACT 58.911 33.333 0.00 0.00 0.00 3.24
521 539 8.240883 AGACAATAAGATGAAACGTACAAGAC 57.759 34.615 0.00 0.00 0.00 3.01
522 540 8.827177 AAGACAATAAGATGAAACGTACAAGA 57.173 30.769 0.00 0.00 0.00 3.02
523 541 8.169268 GGAAGACAATAAGATGAAACGTACAAG 58.831 37.037 0.00 0.00 0.00 3.16
524 542 7.876068 AGGAAGACAATAAGATGAAACGTACAA 59.124 33.333 0.00 0.00 0.00 2.41
525 543 7.330946 CAGGAAGACAATAAGATGAAACGTACA 59.669 37.037 0.00 0.00 0.00 2.90
526 544 7.674240 GCAGGAAGACAATAAGATGAAACGTAC 60.674 40.741 0.00 0.00 0.00 3.67
527 545 6.312918 GCAGGAAGACAATAAGATGAAACGTA 59.687 38.462 0.00 0.00 0.00 3.57
528 546 5.122396 GCAGGAAGACAATAAGATGAAACGT 59.878 40.000 0.00 0.00 0.00 3.99
529 547 5.122239 TGCAGGAAGACAATAAGATGAAACG 59.878 40.000 0.00 0.00 0.00 3.60
530 548 6.500684 TGCAGGAAGACAATAAGATGAAAC 57.499 37.500 0.00 0.00 0.00 2.78
531 549 7.523293 TTTGCAGGAAGACAATAAGATGAAA 57.477 32.000 0.00 0.00 0.00 2.69
532 550 7.523293 TTTTGCAGGAAGACAATAAGATGAA 57.477 32.000 0.00 0.00 0.00 2.57
533 551 7.414429 CGATTTTGCAGGAAGACAATAAGATGA 60.414 37.037 0.00 0.00 0.00 2.92
534 552 6.690098 CGATTTTGCAGGAAGACAATAAGATG 59.310 38.462 0.00 0.00 0.00 2.90
535 553 6.599244 TCGATTTTGCAGGAAGACAATAAGAT 59.401 34.615 0.00 0.00 0.00 2.40
536 554 5.937540 TCGATTTTGCAGGAAGACAATAAGA 59.062 36.000 0.00 0.00 0.00 2.10
537 555 6.182039 TCGATTTTGCAGGAAGACAATAAG 57.818 37.500 0.00 0.00 0.00 1.73
538 556 6.016693 TGTTCGATTTTGCAGGAAGACAATAA 60.017 34.615 0.00 0.00 0.00 1.40
539 557 5.471797 TGTTCGATTTTGCAGGAAGACAATA 59.528 36.000 0.00 0.00 0.00 1.90
540 558 4.278170 TGTTCGATTTTGCAGGAAGACAAT 59.722 37.500 0.00 0.00 0.00 2.71
541 559 3.629855 TGTTCGATTTTGCAGGAAGACAA 59.370 39.130 0.00 0.00 0.00 3.18
542 560 3.210227 TGTTCGATTTTGCAGGAAGACA 58.790 40.909 0.00 0.00 0.00 3.41
543 561 3.896648 TGTTCGATTTTGCAGGAAGAC 57.103 42.857 0.00 0.00 0.00 3.01
544 562 3.303725 CGTTGTTCGATTTTGCAGGAAGA 60.304 43.478 0.00 0.00 42.86 2.87
545 563 2.973224 CGTTGTTCGATTTTGCAGGAAG 59.027 45.455 0.00 0.00 42.86 3.46
546 564 2.614520 TCGTTGTTCGATTTTGCAGGAA 59.385 40.909 0.00 0.00 44.01 3.36
547 565 2.214347 TCGTTGTTCGATTTTGCAGGA 58.786 42.857 0.00 0.00 44.01 3.86
548 566 2.679355 TCGTTGTTCGATTTTGCAGG 57.321 45.000 0.00 0.00 44.01 4.85
559 577 1.529438 TCTCGCACCATTTCGTTGTTC 59.471 47.619 0.00 0.00 0.00 3.18
594 612 2.563179 AGAGATGCAACTACACGGAGTT 59.437 45.455 0.00 0.00 41.61 3.01
609 631 0.674581 TGGCAGTTCCGCAAGAGATG 60.675 55.000 0.00 0.00 43.02 2.90
878 918 5.800296 TCTCGATATTCTCTGTCCTCTAGG 58.200 45.833 0.00 0.00 0.00 3.02
880 920 7.546316 CGTATTCTCGATATTCTCTGTCCTCTA 59.454 40.741 0.00 0.00 0.00 2.43
890 930 5.183522 GGGTTCCTCGTATTCTCGATATTCT 59.816 44.000 0.00 0.00 39.12 2.40
891 931 5.048224 TGGGTTCCTCGTATTCTCGATATTC 60.048 44.000 0.00 0.00 39.12 1.75
1091 1144 3.147889 CTGAAGCGCGCTGGATTCG 62.148 63.158 37.24 19.07 0.00 3.34
1208 1261 0.107654 GACCCCAATCAGGAACGGAG 60.108 60.000 0.00 0.00 41.22 4.63
1363 1427 2.155732 CGCTGACAACATCCGCATATAC 59.844 50.000 0.00 0.00 37.40 1.47
1420 1499 6.983890 TCCTTTCTTTTGGCAAATCAAACTAC 59.016 34.615 14.29 0.00 36.49 2.73
1877 1958 3.311322 TGCCGAATCAATTATCGTTCACC 59.689 43.478 6.69 0.00 37.36 4.02
1878 1959 4.034048 AGTGCCGAATCAATTATCGTTCAC 59.966 41.667 14.76 14.76 39.12 3.18
1879 1960 4.188462 AGTGCCGAATCAATTATCGTTCA 58.812 39.130 6.69 2.83 37.36 3.18
1880 1961 4.508124 AGAGTGCCGAATCAATTATCGTTC 59.492 41.667 6.69 0.00 37.36 3.95
1881 1962 4.271049 CAGAGTGCCGAATCAATTATCGTT 59.729 41.667 6.69 0.00 37.36 3.85
1882 1963 3.804325 CAGAGTGCCGAATCAATTATCGT 59.196 43.478 6.69 0.00 37.36 3.73
1883 1964 3.185188 CCAGAGTGCCGAATCAATTATCG 59.815 47.826 0.00 1.65 38.74 2.92
1884 1965 4.380531 TCCAGAGTGCCGAATCAATTATC 58.619 43.478 0.00 0.00 0.00 1.75
1885 1966 4.422073 TCCAGAGTGCCGAATCAATTAT 57.578 40.909 0.00 0.00 0.00 1.28
1886 1967 3.904800 TCCAGAGTGCCGAATCAATTA 57.095 42.857 0.00 0.00 0.00 1.40
1915 2015 8.261522 GGATTCGCCTCCTATATCTTCTTTATT 58.738 37.037 0.00 0.00 32.18 1.40
1956 2056 1.202222 ACGCAGAAGCAGCATTATTGC 60.202 47.619 1.25 1.25 42.27 3.56
2050 2207 3.985925 CAGCAAATTCTTTGTCTGGCTTC 59.014 43.478 12.29 0.00 42.56 3.86
2178 2335 1.324383 TTTCCCCAAAGCCTTTCGAC 58.676 50.000 0.00 0.00 0.00 4.20
2273 2430 4.680237 CGCGGGCACAGGAGTTCA 62.680 66.667 0.00 0.00 0.00 3.18
2287 2444 2.936498 AGTTTCACAATATCCTTCCGCG 59.064 45.455 0.00 0.00 0.00 6.46
2303 2460 5.473504 TGAGCCTAACAATTCCTTGAGTTTC 59.526 40.000 0.00 0.00 36.20 2.78
2314 2471 9.686683 ACAGATAATAAACTGAGCCTAACAATT 57.313 29.630 0.00 0.00 37.54 2.32
2364 2521 6.915544 TCTGTTCTATCATTTCATCAGTGC 57.084 37.500 0.00 0.00 0.00 4.40
2496 2724 8.997621 ATAGTCTTAACGAGTTAAATGCTCAA 57.002 30.769 9.36 0.00 34.95 3.02
2505 2733 7.705325 GCATTCCTGAATAGTCTTAACGAGTTA 59.295 37.037 0.00 0.00 0.00 2.24
2510 2738 5.041287 TCGCATTCCTGAATAGTCTTAACG 58.959 41.667 0.00 0.00 0.00 3.18
2516 2744 4.876125 TCTGATCGCATTCCTGAATAGTC 58.124 43.478 0.00 0.00 0.00 2.59
2586 2814 4.458989 TCATTAACTTCCACAGCCAATGAC 59.541 41.667 0.00 0.00 33.82 3.06
2995 3224 2.483877 TGGTCACGATGAATGAGTTTGC 59.516 45.455 0.00 0.00 0.00 3.68
3004 3233 3.373748 GCATACACAATGGTCACGATGAA 59.626 43.478 0.00 0.00 35.99 2.57
3121 3350 2.824689 TGGGAATTTAGCCTCATGCA 57.175 45.000 0.00 0.00 44.83 3.96
3163 3392 6.494893 TGCTACAATTGGTAATGTTCTGAC 57.505 37.500 10.83 0.00 0.00 3.51
3190 3420 3.144506 CAGCCTGACAGAGTTTTCACAT 58.855 45.455 3.32 0.00 0.00 3.21
3192 3422 2.838736 TCAGCCTGACAGAGTTTTCAC 58.161 47.619 3.32 0.00 0.00 3.18
3195 3425 3.070018 CGATTCAGCCTGACAGAGTTTT 58.930 45.455 3.32 0.00 0.00 2.43
3256 3494 9.466497 ACATCAGGAGCTAAGAATTCAAAATAA 57.534 29.630 8.44 0.00 0.00 1.40
3257 3495 8.896744 CACATCAGGAGCTAAGAATTCAAAATA 58.103 33.333 8.44 0.00 0.00 1.40
3258 3496 7.613022 TCACATCAGGAGCTAAGAATTCAAAAT 59.387 33.333 8.44 0.00 0.00 1.82
3259 3497 6.942005 TCACATCAGGAGCTAAGAATTCAAAA 59.058 34.615 8.44 0.00 0.00 2.44
3260 3498 6.372659 GTCACATCAGGAGCTAAGAATTCAAA 59.627 38.462 8.44 0.00 0.00 2.69
3261 3499 5.877012 GTCACATCAGGAGCTAAGAATTCAA 59.123 40.000 8.44 0.00 0.00 2.69
3276 3514 5.702670 AGTCACAACCAATTAGTCACATCAG 59.297 40.000 0.00 0.00 0.00 2.90
3298 3536 6.953101 ACCCTAATGAAAACCAACAAAAAGT 58.047 32.000 0.00 0.00 0.00 2.66
3304 3542 5.941555 AACAACCCTAATGAAAACCAACA 57.058 34.783 0.00 0.00 0.00 3.33
3409 3649 1.378531 AGACAGTTGCGCACAAAAGA 58.621 45.000 11.12 0.00 37.58 2.52
3434 3674 3.545703 ACCAGTAGTCCATTATGCAAGC 58.454 45.455 0.00 0.00 0.00 4.01
3499 3739 4.462834 TCAACTCGTCATCACCTCATAACT 59.537 41.667 0.00 0.00 0.00 2.24
3546 3786 8.579863 AGAAGGGACAATAGTTTTTCAAATGAG 58.420 33.333 0.00 0.00 0.00 2.90
3599 3839 3.547054 TTATGAGGGCGTAAAATCCGT 57.453 42.857 0.00 0.00 0.00 4.69
3732 3972 4.639334 CCACATCATCAACTAGCATAGCT 58.361 43.478 0.00 0.00 44.39 3.32
4045 4285 5.412640 TGACATGCAAATGTGGAATGAATC 58.587 37.500 0.00 0.00 34.45 2.52
4053 4293 9.970395 ATAAATTACTATGACATGCAAATGTGG 57.030 29.630 0.00 0.00 34.45 4.17
4124 4364 5.922960 AGAATATGGGGTGTGGCTAATTA 57.077 39.130 0.00 0.00 0.00 1.40
4178 4418 3.161866 TGCGGTATAGCACATAGGATCA 58.838 45.455 2.37 0.00 42.92 2.92
4197 4437 8.976986 ATGATTCACTGAACTAATTTTTCTGC 57.023 30.769 0.00 0.00 0.00 4.26
4254 4494 4.851843 TGAAATGACTGAGCAAGATGGAT 58.148 39.130 0.00 0.00 0.00 3.41
4328 4568 2.932614 CTGCAAACCTATCCTTCGAGTG 59.067 50.000 0.00 0.00 0.00 3.51
4330 4570 2.932614 CACTGCAAACCTATCCTTCGAG 59.067 50.000 0.00 0.00 0.00 4.04
4585 4825 4.037923 CCAAAAATACAGTCAGCAACAGGT 59.962 41.667 0.00 0.00 0.00 4.00
4589 4829 4.584327 ACCCAAAAATACAGTCAGCAAC 57.416 40.909 0.00 0.00 0.00 4.17
4613 4853 3.572255 TGGCTGTGTCACCTTTAAATTCC 59.428 43.478 0.00 0.00 0.00 3.01
4683 4923 1.873165 CGGCCACGTAAAACTGCAT 59.127 52.632 2.24 0.00 34.81 3.96
4935 5175 2.415512 GACCAACACCGAAAGAGCATAC 59.584 50.000 0.00 0.00 0.00 2.39
4946 5186 0.249699 TGCAGTACAGACCAACACCG 60.250 55.000 0.00 0.00 0.00 4.94
5061 5308 1.681166 GGAGAGCATCACTTGGCACAT 60.681 52.381 0.00 0.00 35.67 3.21
5107 5356 2.224523 TGTGTGAGAAGGATGTTCCACC 60.225 50.000 0.00 0.00 39.61 4.61
5275 5524 9.255304 GGTTCATTGCTAGAAAAACACATTAAA 57.745 29.630 0.00 0.00 0.00 1.52
5276 5525 8.417106 TGGTTCATTGCTAGAAAAACACATTAA 58.583 29.630 0.00 0.00 0.00 1.40
5277 5526 7.946207 TGGTTCATTGCTAGAAAAACACATTA 58.054 30.769 0.00 0.00 0.00 1.90
5279 5528 6.403866 TGGTTCATTGCTAGAAAAACACAT 57.596 33.333 0.00 0.00 0.00 3.21
5281 5530 7.277760 AGTTTTGGTTCATTGCTAGAAAAACAC 59.722 33.333 9.52 0.00 30.97 3.32
5282 5531 7.327214 AGTTTTGGTTCATTGCTAGAAAAACA 58.673 30.769 9.52 0.00 30.97 2.83
5283 5532 7.491048 TGAGTTTTGGTTCATTGCTAGAAAAAC 59.509 33.333 0.00 0.00 0.00 2.43
5309 5561 2.300152 TGCTCGTCTTCCATCTCAAACT 59.700 45.455 0.00 0.00 0.00 2.66
5444 5697 3.005050 ACAATGCTGAGTGAAACATGTGG 59.995 43.478 0.00 0.00 41.43 4.17
5476 5729 2.795231 ATGCTCCAGTAGTTGTGCAT 57.205 45.000 5.58 5.58 39.00 3.96
5564 5817 3.084039 CCATATGTTATTGGCCGATGCT 58.916 45.455 16.45 0.05 37.74 3.79
5566 5819 5.902613 ATTCCATATGTTATTGGCCGATG 57.097 39.130 16.45 0.00 32.80 3.84
5572 5825 5.241506 ACGCTGGAATTCCATATGTTATTGG 59.758 40.000 27.20 12.48 46.46 3.16
5574 5827 5.827797 ACACGCTGGAATTCCATATGTTATT 59.172 36.000 27.20 9.71 46.46 1.40
5575 5828 5.239306 CACACGCTGGAATTCCATATGTTAT 59.761 40.000 27.20 12.81 46.46 1.89
5590 5844 3.249799 TCAATGTACTTTTCACACGCTGG 59.750 43.478 0.00 0.00 0.00 4.85
5595 5849 8.784043 ACCTTTATCTCAATGTACTTTTCACAC 58.216 33.333 0.00 0.00 0.00 3.82
5635 5889 6.340537 CATTTGGAGAAATGCTGTAAATGC 57.659 37.500 0.00 0.00 41.50 3.56
5665 5919 0.676782 GCATGCTTTAGACACCGGGT 60.677 55.000 11.37 0.00 0.00 5.28
5668 5922 1.535028 TGTTGCATGCTTTAGACACCG 59.465 47.619 20.33 0.00 0.00 4.94
5676 5930 1.270199 TGCGGAAATGTTGCATGCTTT 60.270 42.857 20.33 10.85 32.86 3.51
5692 5946 2.813908 GGTGGCGAACTAGTGCGG 60.814 66.667 24.49 6.85 0.00 5.69
5696 5950 1.003718 GCAAGGGTGGCGAACTAGT 60.004 57.895 0.00 0.00 0.00 2.57
5714 5968 3.799420 GGATCCGAGAAAGATTTCTGACG 59.201 47.826 12.38 10.20 46.84 4.35
5733 5987 7.055378 CCTTCTGATTCTTGAAGATTGAGGAT 58.945 38.462 16.17 0.00 41.38 3.24
5739 5993 9.476928 AAATGATCCTTCTGATTCTTGAAGATT 57.523 29.630 16.17 0.00 41.38 2.40
5747 6001 8.647256 AACTTGAAAATGATCCTTCTGATTCT 57.353 30.769 0.00 0.00 32.41 2.40
5800 6054 5.241728 GCCAAAAAGTGTAGTCCAGAAGATT 59.758 40.000 0.00 0.00 0.00 2.40
5801 6055 4.762251 GCCAAAAAGTGTAGTCCAGAAGAT 59.238 41.667 0.00 0.00 0.00 2.40
5802 6056 4.134563 GCCAAAAAGTGTAGTCCAGAAGA 58.865 43.478 0.00 0.00 0.00 2.87
5803 6057 4.137543 AGCCAAAAAGTGTAGTCCAGAAG 58.862 43.478 0.00 0.00 0.00 2.85
5804 6058 4.164843 AGCCAAAAAGTGTAGTCCAGAA 57.835 40.909 0.00 0.00 0.00 3.02
5806 6060 7.770897 AGAATATAGCCAAAAAGTGTAGTCCAG 59.229 37.037 0.00 0.00 0.00 3.86
5807 6061 7.630082 AGAATATAGCCAAAAAGTGTAGTCCA 58.370 34.615 0.00 0.00 0.00 4.02
5808 6062 8.507524 AAGAATATAGCCAAAAAGTGTAGTCC 57.492 34.615 0.00 0.00 0.00 3.85
5812 6066 8.885722 CGGTAAAGAATATAGCCAAAAAGTGTA 58.114 33.333 0.00 0.00 0.00 2.90
5813 6067 7.608761 TCGGTAAAGAATATAGCCAAAAAGTGT 59.391 33.333 0.00 0.00 0.00 3.55
5814 6068 7.981142 TCGGTAAAGAATATAGCCAAAAAGTG 58.019 34.615 0.00 0.00 0.00 3.16
5838 6092 7.148018 TGGAATAGGCTGAACTGAAATGAAATC 60.148 37.037 0.00 0.00 0.00 2.17
5850 6104 2.162408 GCACAGTTGGAATAGGCTGAAC 59.838 50.000 0.00 0.00 33.57 3.18
5872 6126 2.276740 GGAATGGAGGTGGCCCAG 59.723 66.667 0.00 0.00 37.08 4.45
5873 6127 3.727258 CGGAATGGAGGTGGCCCA 61.727 66.667 0.00 0.00 38.19 5.36
5876 6130 4.115199 AGGCGGAATGGAGGTGGC 62.115 66.667 0.00 0.00 0.00 5.01
5877 6131 2.124570 CAGGCGGAATGGAGGTGG 60.125 66.667 0.00 0.00 0.00 4.61
5878 6132 2.124570 CCAGGCGGAATGGAGGTG 60.125 66.667 0.00 0.00 40.51 4.00
5922 6176 4.778143 ACCTCGCGGCCACATTCC 62.778 66.667 6.13 0.00 0.00 3.01
5952 6214 1.638679 CCCACCAGGCATCAGATGGA 61.639 60.000 12.54 0.00 37.54 3.41
5954 6216 1.152819 CCCCACCAGGCATCAGATG 60.153 63.158 5.98 5.98 0.00 2.90
5955 6217 2.389449 CCCCCACCAGGCATCAGAT 61.389 63.158 0.00 0.00 0.00 2.90
5957 6219 3.341629 ACCCCCACCAGGCATCAG 61.342 66.667 0.00 0.00 0.00 2.90
5958 6220 3.660571 CACCCCCACCAGGCATCA 61.661 66.667 0.00 0.00 0.00 3.07
5963 6225 3.466803 AAAAGGCACCCCCACCAGG 62.467 63.158 0.00 0.00 35.39 4.45
5964 6226 2.201210 AAAAGGCACCCCCACCAG 59.799 61.111 0.00 0.00 35.39 4.00
5965 6227 2.123077 CAAAAGGCACCCCCACCA 60.123 61.111 0.00 0.00 35.39 4.17
5966 6228 1.764454 AACAAAAGGCACCCCCACC 60.764 57.895 0.00 0.00 35.39 4.61
5967 6229 1.334384 ACAACAAAAGGCACCCCCAC 61.334 55.000 0.00 0.00 35.39 4.61
5968 6230 1.002274 ACAACAAAAGGCACCCCCA 59.998 52.632 0.00 0.00 35.39 4.96
5969 6231 1.045911 TCACAACAAAAGGCACCCCC 61.046 55.000 0.00 0.00 0.00 5.40
6007 6269 2.058798 CGTCTTGTTTGCTTCGAGCTA 58.941 47.619 8.07 0.00 42.97 3.32
6034 6296 5.420739 TCTTGGTTAGCCTTTTGTTTTCAGT 59.579 36.000 0.00 0.00 35.27 3.41
6051 6313 3.818773 CGTTGGGATAGTTGTTCTTGGTT 59.181 43.478 0.00 0.00 0.00 3.67
6076 6338 5.622346 TTGGCTGGTGGTTTCTAAAATTT 57.378 34.783 0.00 0.00 0.00 1.82
6083 6345 0.106918 TCGTTTGGCTGGTGGTTTCT 60.107 50.000 0.00 0.00 0.00 2.52
6093 6355 0.676782 GGGCATAGTGTCGTTTGGCT 60.677 55.000 0.00 0.00 35.23 4.75
6116 6378 3.894638 CATGCAGGGGCCCTAGGG 61.895 72.222 28.28 24.89 40.13 3.53
6117 6379 1.723128 AATCATGCAGGGGCCCTAGG 61.723 60.000 28.28 15.96 40.13 3.02
6118 6380 1.067295 TAATCATGCAGGGGCCCTAG 58.933 55.000 28.28 20.45 40.13 3.02
6119 6381 1.528600 TTAATCATGCAGGGGCCCTA 58.471 50.000 28.28 12.07 40.13 3.53
6120 6382 0.636101 TTTAATCATGCAGGGGCCCT 59.364 50.000 22.67 22.67 40.13 5.19
6121 6383 1.720781 ATTTAATCATGCAGGGGCCC 58.279 50.000 17.12 17.12 40.13 5.80
6122 6384 4.100808 TGTTAATTTAATCATGCAGGGGCC 59.899 41.667 0.00 0.00 40.13 5.80
6123 6385 5.068987 TCTGTTAATTTAATCATGCAGGGGC 59.931 40.000 0.00 0.00 41.68 5.80
6124 6386 6.713762 TCTGTTAATTTAATCATGCAGGGG 57.286 37.500 0.00 0.00 0.00 4.79
6134 6396 9.901172 ACCGTCCTCTAAATCTGTTAATTTAAT 57.099 29.630 0.00 0.00 32.28 1.40
6135 6397 9.729281 AACCGTCCTCTAAATCTGTTAATTTAA 57.271 29.630 0.00 0.00 32.28 1.52
6136 6398 9.729281 AAACCGTCCTCTAAATCTGTTAATTTA 57.271 29.630 0.00 0.00 31.50 1.40
6137 6399 8.512138 CAAACCGTCCTCTAAATCTGTTAATTT 58.488 33.333 0.00 0.00 33.54 1.82
6138 6400 7.120726 CCAAACCGTCCTCTAAATCTGTTAATT 59.879 37.037 0.00 0.00 0.00 1.40
6139 6401 6.598064 CCAAACCGTCCTCTAAATCTGTTAAT 59.402 38.462 0.00 0.00 0.00 1.40
6140 6402 5.935789 CCAAACCGTCCTCTAAATCTGTTAA 59.064 40.000 0.00 0.00 0.00 2.01
6141 6403 5.246656 TCCAAACCGTCCTCTAAATCTGTTA 59.753 40.000 0.00 0.00 0.00 2.41
6142 6404 4.041198 TCCAAACCGTCCTCTAAATCTGTT 59.959 41.667 0.00 0.00 0.00 3.16
6143 6405 3.581332 TCCAAACCGTCCTCTAAATCTGT 59.419 43.478 0.00 0.00 0.00 3.41
6144 6406 4.202245 TCCAAACCGTCCTCTAAATCTG 57.798 45.455 0.00 0.00 0.00 2.90
6145 6407 5.424252 TGTATCCAAACCGTCCTCTAAATCT 59.576 40.000 0.00 0.00 0.00 2.40
6146 6408 5.667466 TGTATCCAAACCGTCCTCTAAATC 58.333 41.667 0.00 0.00 0.00 2.17
6147 6409 5.687166 TGTATCCAAACCGTCCTCTAAAT 57.313 39.130 0.00 0.00 0.00 1.40
6148 6410 5.486735 TTGTATCCAAACCGTCCTCTAAA 57.513 39.130 0.00 0.00 0.00 1.85
6149 6411 5.687166 ATTGTATCCAAACCGTCCTCTAA 57.313 39.130 0.00 0.00 33.44 2.10
6150 6412 5.221106 CGTATTGTATCCAAACCGTCCTCTA 60.221 44.000 0.00 0.00 33.44 2.43
6151 6413 4.441079 CGTATTGTATCCAAACCGTCCTCT 60.441 45.833 0.00 0.00 33.44 3.69
6152 6414 3.800506 CGTATTGTATCCAAACCGTCCTC 59.199 47.826 0.00 0.00 33.44 3.71
6153 6415 3.448301 TCGTATTGTATCCAAACCGTCCT 59.552 43.478 0.00 0.00 33.44 3.85
6154 6416 3.784338 TCGTATTGTATCCAAACCGTCC 58.216 45.455 0.00 0.00 33.44 4.79
6155 6417 4.501921 GTCTCGTATTGTATCCAAACCGTC 59.498 45.833 0.00 0.00 33.44 4.79
6156 6418 4.082081 TGTCTCGTATTGTATCCAAACCGT 60.082 41.667 0.00 0.00 33.44 4.83
6157 6419 4.426416 TGTCTCGTATTGTATCCAAACCG 58.574 43.478 0.00 0.00 33.44 4.44
6158 6420 4.270325 GCTGTCTCGTATTGTATCCAAACC 59.730 45.833 0.00 0.00 33.44 3.27
6159 6421 4.270325 GGCTGTCTCGTATTGTATCCAAAC 59.730 45.833 0.00 0.00 33.44 2.93
6160 6422 4.439057 GGCTGTCTCGTATTGTATCCAAA 58.561 43.478 0.00 0.00 33.44 3.28
6161 6423 4.054780 GGCTGTCTCGTATTGTATCCAA 57.945 45.455 0.00 0.00 34.45 3.53
6162 6424 3.728076 GGCTGTCTCGTATTGTATCCA 57.272 47.619 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.