Multiple sequence alignment - TraesCS4D01G104800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G104800 chr4D 100.000 5475 0 0 1 5475 82870941 82865467 0.000000e+00 10111.0
1 TraesCS4D01G104800 chr4D 96.825 63 2 0 3493 3555 82867395 82867333 7.500000e-19 106.0
2 TraesCS4D01G104800 chr4D 96.825 63 2 0 3547 3609 82867449 82867387 7.500000e-19 106.0
3 TraesCS4D01G104800 chr4B 94.458 3248 92 15 909 4094 117386646 117383425 0.000000e+00 4920.0
4 TraesCS4D01G104800 chr4B 93.301 1030 29 6 4188 5213 117383426 117382433 0.000000e+00 1483.0
5 TraesCS4D01G104800 chr4B 84.504 484 38 13 290 767 117387085 117386633 1.400000e-120 444.0
6 TraesCS4D01G104800 chr4B 82.270 282 17 8 5183 5431 117382432 117382151 4.300000e-51 213.0
7 TraesCS4D01G104800 chr4B 88.983 118 12 1 4093 4210 327517422 327517306 1.590000e-30 145.0
8 TraesCS4D01G104800 chr4B 84.404 109 17 0 3547 3655 117384052 117383944 2.090000e-19 108.0
9 TraesCS4D01G104800 chr4B 95.238 63 3 0 3493 3555 117383971 117383909 3.490000e-17 100.0
10 TraesCS4D01G104800 chr4A 94.562 1600 65 11 909 2499 494643840 494642254 0.000000e+00 2453.0
11 TraesCS4D01G104800 chr4A 97.516 765 19 0 2493 3257 494642106 494641342 0.000000e+00 1308.0
12 TraesCS4D01G104800 chr4A 86.369 873 84 14 4365 5209 494640348 494639483 0.000000e+00 920.0
13 TraesCS4D01G104800 chr4A 90.950 663 33 6 3190 3852 494641379 494640744 0.000000e+00 867.0
14 TraesCS4D01G104800 chr4A 84.399 391 35 12 290 675 494644233 494643864 1.450000e-95 361.0
15 TraesCS4D01G104800 chr4A 88.525 122 10 2 4069 4190 543742196 543742079 1.590000e-30 145.0
16 TraesCS4D01G104800 chr4A 80.488 82 16 0 3574 3655 494641076 494640995 4.580000e-06 63.9
17 TraesCS4D01G104800 chr5A 87.578 161 17 3 757 915 623678825 623678666 3.370000e-42 183.0
18 TraesCS4D01G104800 chr1D 88.667 150 16 1 765 913 470417803 470417952 1.210000e-41 182.0
19 TraesCS4D01G104800 chr1D 93.396 106 7 0 4084 4189 190767385 190767280 2.040000e-34 158.0
20 TraesCS4D01G104800 chr5B 88.514 148 16 1 769 915 393983856 393983709 1.570000e-40 178.0
21 TraesCS4D01G104800 chr5B 88.356 146 16 1 769 913 339291777 339291922 2.030000e-39 174.0
22 TraesCS4D01G104800 chr5B 90.991 111 9 1 4092 4202 543932629 543932738 1.230000e-31 148.0
23 TraesCS4D01G104800 chr2B 88.514 148 16 1 768 914 159364359 159364212 1.570000e-40 178.0
24 TraesCS4D01G104800 chr2B 86.667 150 19 1 767 915 41607467 41607616 1.220000e-36 165.0
25 TraesCS4D01G104800 chr7D 88.000 150 15 3 768 915 579747466 579747614 2.030000e-39 174.0
26 TraesCS4D01G104800 chr7D 91.743 109 7 1 4081 4189 478082399 478082505 3.420000e-32 150.0
27 TraesCS4D01G104800 chr7D 88.983 118 11 1 4093 4210 556786882 556786767 1.590000e-30 145.0
28 TraesCS4D01G104800 chr7D 96.875 32 1 0 240 271 394343271 394343302 3.000000e-03 54.7
29 TraesCS4D01G104800 chr5D 88.356 146 16 1 770 914 529256577 529256432 2.030000e-39 174.0
30 TraesCS4D01G104800 chr5D 88.112 143 16 1 770 911 335865262 335865120 9.430000e-38 169.0
31 TraesCS4D01G104800 chr5D 91.818 110 8 1 4089 4197 302514350 302514459 9.500000e-33 152.0
32 TraesCS4D01G104800 chr3A 89.516 124 11 2 4081 4202 581268676 581268799 7.340000e-34 156.0
33 TraesCS4D01G104800 chr3A 83.077 130 21 1 767 895 529109242 529109113 3.470000e-22 117.0
34 TraesCS4D01G104800 chr3B 85.616 146 19 2 768 912 440514682 440514538 9.500000e-33 152.0
35 TraesCS4D01G104800 chrUn 91.071 112 9 1 4078 4189 100241994 100242104 3.420000e-32 150.0
36 TraesCS4D01G104800 chr2A 93.407 91 6 0 3846 3936 151266606 151266696 9.570000e-28 135.0
37 TraesCS4D01G104800 chr3D 91.667 96 7 1 3848 3942 541072283 541072188 1.240000e-26 132.0
38 TraesCS4D01G104800 chr3D 91.398 93 7 1 3849 3940 66523465 66523373 5.760000e-25 126.0
39 TraesCS4D01G104800 chr7B 91.579 95 7 1 3848 3942 639796286 639796193 4.450000e-26 130.0
40 TraesCS4D01G104800 chr7B 96.875 32 1 0 240 271 223611103 223611134 3.000000e-03 54.7
41 TraesCS4D01G104800 chr6D 92.222 90 7 0 3849 3938 28032527 28032438 1.600000e-25 128.0
42 TraesCS4D01G104800 chr6B 89.899 99 10 0 3843 3941 83203159 83203257 1.600000e-25 128.0
43 TraesCS4D01G104800 chr6B 86.792 106 12 2 3831 3935 543229346 543229242 3.470000e-22 117.0
44 TraesCS4D01G104800 chr1B 89.691 97 9 1 3848 3943 7291984 7292080 7.450000e-24 122.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G104800 chr4D 82865467 82870941 5474 True 3441.000000 10111 97.883333 1 5475 3 chr4D.!!$R1 5474
1 TraesCS4D01G104800 chr4B 117382151 117387085 4934 True 1211.333333 4920 89.029167 290 5431 6 chr4B.!!$R2 5141
2 TraesCS4D01G104800 chr4A 494639483 494644233 4750 True 995.483333 2453 89.047333 290 5209 6 chr4A.!!$R2 4919

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
882 894 0.026285 GCTCGTGCGCAAAATCGTAT 59.974 50.000 14.00 0.00 0.00 3.06 F
911 923 0.873054 TCGTACCTATAGCAGCGCTC 59.127 55.000 7.13 2.24 40.44 5.03 F
1974 1994 2.104963 AGAATTATGGAACGGAGGGAGC 59.895 50.000 0.00 0.00 0.00 4.70 F
3154 3335 3.689649 CCACCTGTTCAGTATAGCAAACC 59.310 47.826 0.00 0.00 0.00 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1747 1767 0.773644 ATGACAGCCACCCTCAAAGT 59.226 50.0 0.00 0.0 0.00 2.66 R
2244 2264 1.105457 AAGCAACAAAGCTGACAGCA 58.895 45.0 28.43 0.0 45.89 4.41 R
3234 3415 0.106918 AAGTTTCCTTGTGGTGGCGA 60.107 50.0 0.00 0.0 34.23 5.54 R
4839 5160 0.824759 ACGGTTAGATCACCTCAGCC 59.175 55.0 0.00 0.0 34.22 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 6.419980 CAAGTCTAGATTCTTGGAAGCAAG 57.580 41.667 13.00 0.00 37.83 4.01
45 46 5.096443 AGTCTAGATTCTTGGAAGCAAGG 57.904 43.478 0.00 0.00 33.26 3.61
46 47 3.625313 GTCTAGATTCTTGGAAGCAAGGC 59.375 47.826 0.00 0.00 33.26 4.35
47 48 2.895242 AGATTCTTGGAAGCAAGGCT 57.105 45.000 0.00 0.00 42.56 4.58
58 59 2.698855 AGCAAGGCTTACATCACGAT 57.301 45.000 0.00 0.00 33.89 3.73
59 60 2.555199 AGCAAGGCTTACATCACGATC 58.445 47.619 0.00 0.00 33.89 3.69
60 61 2.169352 AGCAAGGCTTACATCACGATCT 59.831 45.455 0.00 0.00 33.89 2.75
61 62 3.384789 AGCAAGGCTTACATCACGATCTA 59.615 43.478 0.00 0.00 33.89 1.98
62 63 4.039730 AGCAAGGCTTACATCACGATCTAT 59.960 41.667 0.00 0.00 33.89 1.98
63 64 4.387256 GCAAGGCTTACATCACGATCTATC 59.613 45.833 0.00 0.00 0.00 2.08
64 65 8.922336 AGCAAGGCTTACATCACGATCTATCG 62.922 46.154 10.67 10.67 46.14 2.92
85 86 3.624326 CTTGTCAAGCATCGAACCAAA 57.376 42.857 0.00 0.00 0.00 3.28
86 87 3.963665 CTTGTCAAGCATCGAACCAAAA 58.036 40.909 0.00 0.00 0.00 2.44
87 88 3.624326 TGTCAAGCATCGAACCAAAAG 57.376 42.857 0.00 0.00 0.00 2.27
88 89 2.293122 TGTCAAGCATCGAACCAAAAGG 59.707 45.455 0.00 0.00 0.00 3.11
89 90 2.552315 GTCAAGCATCGAACCAAAAGGA 59.448 45.455 0.00 0.00 0.00 3.36
90 91 3.004315 GTCAAGCATCGAACCAAAAGGAA 59.996 43.478 0.00 0.00 0.00 3.36
91 92 3.253188 TCAAGCATCGAACCAAAAGGAAG 59.747 43.478 0.00 0.00 0.00 3.46
92 93 3.140325 AGCATCGAACCAAAAGGAAGA 57.860 42.857 0.00 0.00 0.00 2.87
93 94 3.486383 AGCATCGAACCAAAAGGAAGAA 58.514 40.909 0.00 0.00 0.00 2.52
94 95 3.253432 AGCATCGAACCAAAAGGAAGAAC 59.747 43.478 0.00 0.00 0.00 3.01
95 96 3.004315 GCATCGAACCAAAAGGAAGAACA 59.996 43.478 0.00 0.00 0.00 3.18
96 97 4.321230 GCATCGAACCAAAAGGAAGAACAT 60.321 41.667 0.00 0.00 0.00 2.71
97 98 5.772521 CATCGAACCAAAAGGAAGAACATT 58.227 37.500 0.00 0.00 0.00 2.71
98 99 5.181690 TCGAACCAAAAGGAAGAACATTG 57.818 39.130 0.00 0.00 0.00 2.82
99 100 3.735746 CGAACCAAAAGGAAGAACATTGC 59.264 43.478 0.00 0.00 0.00 3.56
100 101 3.751479 ACCAAAAGGAAGAACATTGCC 57.249 42.857 0.00 0.00 0.00 4.52
101 102 3.308401 ACCAAAAGGAAGAACATTGCCT 58.692 40.909 0.00 0.00 0.00 4.75
102 103 3.070015 ACCAAAAGGAAGAACATTGCCTG 59.930 43.478 0.00 0.00 0.00 4.85
103 104 3.062042 CAAAAGGAAGAACATTGCCTGC 58.938 45.455 0.00 0.00 0.00 4.85
104 105 1.260544 AAGGAAGAACATTGCCTGCC 58.739 50.000 0.00 0.00 0.00 4.85
105 106 0.407139 AGGAAGAACATTGCCTGCCT 59.593 50.000 1.33 1.33 33.53 4.75
106 107 0.529378 GGAAGAACATTGCCTGCCTG 59.471 55.000 0.00 0.00 0.00 4.85
107 108 0.529378 GAAGAACATTGCCTGCCTGG 59.471 55.000 0.00 0.00 39.35 4.45
108 109 0.112995 AAGAACATTGCCTGCCTGGA 59.887 50.000 0.00 0.00 38.35 3.86
109 110 0.323178 AGAACATTGCCTGCCTGGAG 60.323 55.000 0.00 0.00 38.35 3.86
110 111 1.941999 GAACATTGCCTGCCTGGAGC 61.942 60.000 0.00 0.00 44.14 4.70
119 120 4.993307 GCCTGGAGCAATGGATGA 57.007 55.556 0.00 0.00 42.97 2.92
120 121 3.196040 GCCTGGAGCAATGGATGAA 57.804 52.632 0.00 0.00 42.97 2.57
121 122 1.700955 GCCTGGAGCAATGGATGAAT 58.299 50.000 0.00 0.00 42.97 2.57
122 123 2.037144 GCCTGGAGCAATGGATGAATT 58.963 47.619 0.00 0.00 42.97 2.17
123 124 2.035576 GCCTGGAGCAATGGATGAATTC 59.964 50.000 0.00 0.00 42.97 2.17
124 125 2.626743 CCTGGAGCAATGGATGAATTCC 59.373 50.000 2.27 0.00 45.69 3.01
132 133 2.115510 GGATGAATTCCAACCCGCC 58.884 57.895 2.27 0.00 44.74 6.13
133 134 0.395724 GGATGAATTCCAACCCGCCT 60.396 55.000 2.27 0.00 44.74 5.52
134 135 1.474330 GATGAATTCCAACCCGCCTT 58.526 50.000 2.27 0.00 0.00 4.35
135 136 2.650322 GATGAATTCCAACCCGCCTTA 58.350 47.619 2.27 0.00 0.00 2.69
136 137 2.122783 TGAATTCCAACCCGCCTTAG 57.877 50.000 2.27 0.00 0.00 2.18
137 138 1.631388 TGAATTCCAACCCGCCTTAGA 59.369 47.619 2.27 0.00 0.00 2.10
138 139 2.014857 GAATTCCAACCCGCCTTAGAC 58.985 52.381 0.00 0.00 0.00 2.59
139 140 0.255033 ATTCCAACCCGCCTTAGACC 59.745 55.000 0.00 0.00 0.00 3.85
140 141 0.838987 TTCCAACCCGCCTTAGACCT 60.839 55.000 0.00 0.00 0.00 3.85
141 142 0.838987 TCCAACCCGCCTTAGACCTT 60.839 55.000 0.00 0.00 0.00 3.50
142 143 0.037734 CCAACCCGCCTTAGACCTTT 59.962 55.000 0.00 0.00 0.00 3.11
143 144 1.450025 CAACCCGCCTTAGACCTTTC 58.550 55.000 0.00 0.00 0.00 2.62
144 145 0.327259 AACCCGCCTTAGACCTTTCC 59.673 55.000 0.00 0.00 0.00 3.13
145 146 0.838987 ACCCGCCTTAGACCTTTCCA 60.839 55.000 0.00 0.00 0.00 3.53
146 147 0.107654 CCCGCCTTAGACCTTTCCAG 60.108 60.000 0.00 0.00 0.00 3.86
147 148 0.613777 CCGCCTTAGACCTTTCCAGT 59.386 55.000 0.00 0.00 0.00 4.00
148 149 1.003233 CCGCCTTAGACCTTTCCAGTT 59.997 52.381 0.00 0.00 0.00 3.16
149 150 2.235402 CCGCCTTAGACCTTTCCAGTTA 59.765 50.000 0.00 0.00 0.00 2.24
150 151 3.307199 CCGCCTTAGACCTTTCCAGTTAA 60.307 47.826 0.00 0.00 0.00 2.01
151 152 3.683340 CGCCTTAGACCTTTCCAGTTAAC 59.317 47.826 0.00 0.00 0.00 2.01
152 153 4.648651 GCCTTAGACCTTTCCAGTTAACA 58.351 43.478 8.61 0.00 0.00 2.41
153 154 5.254115 GCCTTAGACCTTTCCAGTTAACAT 58.746 41.667 8.61 0.00 0.00 2.71
154 155 6.412214 GCCTTAGACCTTTCCAGTTAACATA 58.588 40.000 8.61 0.00 0.00 2.29
155 156 6.882678 GCCTTAGACCTTTCCAGTTAACATAA 59.117 38.462 8.61 0.00 0.00 1.90
156 157 7.556635 GCCTTAGACCTTTCCAGTTAACATAAT 59.443 37.037 8.61 0.00 0.00 1.28
157 158 9.110502 CCTTAGACCTTTCCAGTTAACATAATC 57.889 37.037 8.61 0.00 0.00 1.75
158 159 9.110502 CTTAGACCTTTCCAGTTAACATAATCC 57.889 37.037 8.61 0.00 0.00 3.01
159 160 7.272144 AGACCTTTCCAGTTAACATAATCCT 57.728 36.000 8.61 0.00 0.00 3.24
160 161 7.339482 AGACCTTTCCAGTTAACATAATCCTC 58.661 38.462 8.61 0.00 0.00 3.71
161 162 7.027874 ACCTTTCCAGTTAACATAATCCTCA 57.972 36.000 8.61 0.00 0.00 3.86
162 163 7.643123 ACCTTTCCAGTTAACATAATCCTCAT 58.357 34.615 8.61 0.00 0.00 2.90
163 164 7.557719 ACCTTTCCAGTTAACATAATCCTCATG 59.442 37.037 8.61 0.00 0.00 3.07
164 165 7.557719 CCTTTCCAGTTAACATAATCCTCATGT 59.442 37.037 8.61 0.00 38.25 3.21
165 166 8.877864 TTTCCAGTTAACATAATCCTCATGTT 57.122 30.769 8.61 6.04 45.90 2.71
166 167 9.967451 TTTCCAGTTAACATAATCCTCATGTTA 57.033 29.630 8.61 4.28 43.14 2.41
167 168 9.613428 TTCCAGTTAACATAATCCTCATGTTAG 57.387 33.333 8.61 0.00 45.04 2.34
168 169 8.988060 TCCAGTTAACATAATCCTCATGTTAGA 58.012 33.333 8.61 1.35 45.04 2.10
169 170 9.265901 CCAGTTAACATAATCCTCATGTTAGAG 57.734 37.037 8.61 0.00 45.04 2.43
175 176 9.965902 AACATAATCCTCATGTTAGAGAAAACT 57.034 29.630 0.00 0.00 43.14 2.66
180 181 7.540474 TCCTCATGTTAGAGAAAACTAGTGT 57.460 36.000 0.00 0.00 37.87 3.55
181 182 7.963532 TCCTCATGTTAGAGAAAACTAGTGTT 58.036 34.615 0.00 0.00 37.87 3.32
182 183 7.872993 TCCTCATGTTAGAGAAAACTAGTGTTG 59.127 37.037 2.08 0.00 37.87 3.33
183 184 7.118390 CCTCATGTTAGAGAAAACTAGTGTTGG 59.882 40.741 2.08 0.00 37.87 3.77
184 185 7.732025 TCATGTTAGAGAAAACTAGTGTTGGA 58.268 34.615 2.08 0.00 36.39 3.53
185 186 8.375506 TCATGTTAGAGAAAACTAGTGTTGGAT 58.624 33.333 2.08 0.00 36.39 3.41
186 187 9.653287 CATGTTAGAGAAAACTAGTGTTGGATA 57.347 33.333 2.08 0.00 36.39 2.59
187 188 9.877178 ATGTTAGAGAAAACTAGTGTTGGATAG 57.123 33.333 2.08 0.00 36.39 2.08
188 189 9.085645 TGTTAGAGAAAACTAGTGTTGGATAGA 57.914 33.333 2.08 0.00 36.39 1.98
191 192 8.602472 AGAGAAAACTAGTGTTGGATAGATCT 57.398 34.615 2.08 0.00 36.39 2.75
192 193 9.041354 AGAGAAAACTAGTGTTGGATAGATCTT 57.959 33.333 2.08 0.00 36.39 2.40
193 194 9.660180 GAGAAAACTAGTGTTGGATAGATCTTT 57.340 33.333 2.08 0.00 36.39 2.52
194 195 9.442047 AGAAAACTAGTGTTGGATAGATCTTTG 57.558 33.333 2.08 0.00 36.39 2.77
195 196 9.436957 GAAAACTAGTGTTGGATAGATCTTTGA 57.563 33.333 2.08 0.00 36.39 2.69
196 197 9.442047 AAAACTAGTGTTGGATAGATCTTTGAG 57.558 33.333 0.00 0.00 36.39 3.02
197 198 7.962995 ACTAGTGTTGGATAGATCTTTGAGA 57.037 36.000 0.00 0.00 0.00 3.27
198 199 8.367660 ACTAGTGTTGGATAGATCTTTGAGAA 57.632 34.615 0.00 0.00 0.00 2.87
199 200 8.254508 ACTAGTGTTGGATAGATCTTTGAGAAC 58.745 37.037 0.00 0.00 0.00 3.01
200 201 7.009179 AGTGTTGGATAGATCTTTGAGAACA 57.991 36.000 0.00 1.93 0.00 3.18
201 202 7.628234 AGTGTTGGATAGATCTTTGAGAACAT 58.372 34.615 0.00 0.00 0.00 2.71
202 203 7.551974 AGTGTTGGATAGATCTTTGAGAACATG 59.448 37.037 0.00 0.00 0.00 3.21
203 204 7.335422 GTGTTGGATAGATCTTTGAGAACATGT 59.665 37.037 0.00 0.00 0.00 3.21
204 205 7.884877 TGTTGGATAGATCTTTGAGAACATGTT 59.115 33.333 11.78 11.78 0.00 2.71
205 206 8.734386 GTTGGATAGATCTTTGAGAACATGTTT 58.266 33.333 13.36 2.74 0.00 2.83
206 207 8.868522 TGGATAGATCTTTGAGAACATGTTTT 57.131 30.769 13.36 6.98 0.00 2.43
207 208 9.300681 TGGATAGATCTTTGAGAACATGTTTTT 57.699 29.630 13.36 4.33 0.00 1.94
234 235 9.959749 TTACCTTTTCTTTGATTGTACACATTC 57.040 29.630 0.00 0.00 0.00 2.67
235 236 8.006298 ACCTTTTCTTTGATTGTACACATTCA 57.994 30.769 0.00 0.00 35.29 2.57
236 237 7.920682 ACCTTTTCTTTGATTGTACACATTCAC 59.079 33.333 0.00 0.00 36.38 3.18
237 238 8.137437 CCTTTTCTTTGATTGTACACATTCACT 58.863 33.333 0.00 0.00 36.38 3.41
238 239 9.520204 CTTTTCTTTGATTGTACACATTCACTT 57.480 29.630 0.00 0.00 36.38 3.16
239 240 9.868277 TTTTCTTTGATTGTACACATTCACTTT 57.132 25.926 0.00 0.00 36.38 2.66
240 241 9.868277 TTTCTTTGATTGTACACATTCACTTTT 57.132 25.926 0.00 0.00 36.38 2.27
278 279 9.988350 TTACCGTAGAACTATAGTTTAGTTTCG 57.012 33.333 18.96 15.73 37.83 3.46
279 280 7.475840 ACCGTAGAACTATAGTTTAGTTTCGG 58.524 38.462 24.77 24.77 43.30 4.30
280 281 6.914757 CCGTAGAACTATAGTTTAGTTTCGGG 59.085 42.308 18.96 9.10 39.59 5.14
281 282 6.914757 CGTAGAACTATAGTTTAGTTTCGGGG 59.085 42.308 18.96 0.00 37.83 5.73
282 283 6.231258 AGAACTATAGTTTAGTTTCGGGGG 57.769 41.667 18.96 0.00 37.83 5.40
283 284 5.723405 AGAACTATAGTTTAGTTTCGGGGGT 59.277 40.000 18.96 0.00 37.83 4.95
284 285 6.897413 AGAACTATAGTTTAGTTTCGGGGGTA 59.103 38.462 18.96 0.00 37.83 3.69
285 286 7.400052 AGAACTATAGTTTAGTTTCGGGGGTAA 59.600 37.037 18.96 0.00 37.83 2.85
286 287 7.494922 ACTATAGTTTAGTTTCGGGGGTAAA 57.505 36.000 0.00 0.00 0.00 2.01
287 288 7.917003 ACTATAGTTTAGTTTCGGGGGTAAAA 58.083 34.615 0.00 0.00 0.00 1.52
288 289 8.382405 ACTATAGTTTAGTTTCGGGGGTAAAAA 58.618 33.333 0.00 0.00 0.00 1.94
438 439 3.007070 GCGACGACGGCGAACAATT 62.007 57.895 30.26 0.00 41.64 2.32
449 450 1.610715 CGAACAATTGGCGACGACGA 61.611 55.000 12.29 0.00 42.66 4.20
459 460 2.562912 GACGACGACAAGCGGGTA 59.437 61.111 0.00 0.00 46.49 3.69
495 496 1.642037 ATGATGGTCGTCGTCGTCGT 61.642 55.000 11.41 0.00 38.33 4.34
497 498 1.964290 GATGGTCGTCGTCGTCGTCT 61.964 60.000 11.41 0.00 38.33 4.18
498 499 1.572085 ATGGTCGTCGTCGTCGTCTT 61.572 55.000 11.41 2.32 38.33 3.01
499 500 1.508746 GGTCGTCGTCGTCGTCTTC 60.509 63.158 11.41 2.33 38.33 2.87
500 501 1.202568 GTCGTCGTCGTCGTCTTCA 59.797 57.895 11.41 0.00 38.33 3.02
501 502 0.179230 GTCGTCGTCGTCGTCTTCAT 60.179 55.000 11.41 0.00 38.33 2.57
502 503 0.514255 TCGTCGTCGTCGTCTTCATT 59.486 50.000 11.41 0.00 38.33 2.57
511 512 0.034198 TCGTCTTCATTTGTGGCGGA 59.966 50.000 0.00 0.00 0.00 5.54
528 529 1.219124 GAAGACTCCGCTGATGGCA 59.781 57.895 0.00 0.00 41.91 4.92
529 530 0.391661 GAAGACTCCGCTGATGGCAA 60.392 55.000 0.00 0.00 41.91 4.52
540 541 3.208594 GCTGATGGCAATACTGATGTGA 58.791 45.455 0.00 0.00 41.35 3.58
549 550 7.056006 TGGCAATACTGATGTGACATTTCTAT 58.944 34.615 0.00 0.00 0.00 1.98
574 575 5.758784 AGAAAGGTTTACGAAAAGAGACCAG 59.241 40.000 0.00 0.00 0.00 4.00
622 625 5.077564 TGAGCTGATTATACGGGTCACTAT 58.922 41.667 0.00 0.00 44.89 2.12
660 668 7.111041 CGTTTAACGAAACTGGTTAGACATTTG 59.889 37.037 12.53 0.00 46.05 2.32
666 674 4.584327 ACTGGTTAGACATTTGTTTGGC 57.416 40.909 0.00 0.00 0.00 4.52
669 677 2.630580 GGTTAGACATTTGTTTGGCCCA 59.369 45.455 0.00 0.00 0.00 5.36
671 679 2.908688 AGACATTTGTTTGGCCCAAC 57.091 45.000 12.74 12.74 0.00 3.77
672 680 2.397597 AGACATTTGTTTGGCCCAACT 58.602 42.857 19.58 0.00 0.00 3.16
675 683 3.277715 ACATTTGTTTGGCCCAACTTTG 58.722 40.909 19.58 15.42 0.00 2.77
704 714 3.138653 TCTCTCTTATTCGTCTAGGCCCT 59.861 47.826 0.00 0.00 0.00 5.19
758 770 2.124819 CGCTTCCCTGCTGCTCAT 60.125 61.111 0.00 0.00 0.00 2.90
759 771 1.748122 CGCTTCCCTGCTGCTCATT 60.748 57.895 0.00 0.00 0.00 2.57
760 772 1.310933 CGCTTCCCTGCTGCTCATTT 61.311 55.000 0.00 0.00 0.00 2.32
761 773 0.455005 GCTTCCCTGCTGCTCATTTC 59.545 55.000 0.00 0.00 0.00 2.17
762 774 1.101331 CTTCCCTGCTGCTCATTTCC 58.899 55.000 0.00 0.00 0.00 3.13
763 775 0.677731 TTCCCTGCTGCTCATTTCCG 60.678 55.000 0.00 0.00 0.00 4.30
764 776 1.377725 CCCTGCTGCTCATTTCCGT 60.378 57.895 0.00 0.00 0.00 4.69
765 777 0.107703 CCCTGCTGCTCATTTCCGTA 60.108 55.000 0.00 0.00 0.00 4.02
766 778 1.475751 CCCTGCTGCTCATTTCCGTAT 60.476 52.381 0.00 0.00 0.00 3.06
767 779 1.869767 CCTGCTGCTCATTTCCGTATC 59.130 52.381 0.00 0.00 0.00 2.24
768 780 1.524355 CTGCTGCTCATTTCCGTATCG 59.476 52.381 0.00 0.00 0.00 2.92
769 781 1.136110 TGCTGCTCATTTCCGTATCGA 59.864 47.619 0.00 0.00 0.00 3.59
770 782 2.201732 GCTGCTCATTTCCGTATCGAA 58.798 47.619 0.00 0.00 0.00 3.71
771 783 2.607635 GCTGCTCATTTCCGTATCGAAA 59.392 45.455 0.00 0.00 36.24 3.46
772 784 3.544244 GCTGCTCATTTCCGTATCGAAAC 60.544 47.826 0.00 0.00 34.68 2.78
773 785 3.857052 TGCTCATTTCCGTATCGAAACT 58.143 40.909 0.00 0.00 34.68 2.66
774 786 3.616821 TGCTCATTTCCGTATCGAAACTG 59.383 43.478 0.00 0.00 34.68 3.16
775 787 3.544244 GCTCATTTCCGTATCGAAACTGC 60.544 47.826 0.00 0.00 34.68 4.40
776 788 3.857052 TCATTTCCGTATCGAAACTGCT 58.143 40.909 0.00 0.00 34.68 4.24
777 789 4.250464 TCATTTCCGTATCGAAACTGCTT 58.750 39.130 0.00 0.00 34.68 3.91
778 790 4.693566 TCATTTCCGTATCGAAACTGCTTT 59.306 37.500 0.00 0.00 34.68 3.51
779 791 4.398549 TTTCCGTATCGAAACTGCTTTG 57.601 40.909 0.00 0.00 0.00 2.77
780 792 3.034721 TCCGTATCGAAACTGCTTTGT 57.965 42.857 0.00 0.00 0.00 2.83
781 793 2.734606 TCCGTATCGAAACTGCTTTGTG 59.265 45.455 0.00 0.00 0.00 3.33
782 794 2.478894 CCGTATCGAAACTGCTTTGTGT 59.521 45.455 0.00 0.00 0.00 3.72
783 795 3.676172 CCGTATCGAAACTGCTTTGTGTA 59.324 43.478 0.00 0.00 0.00 2.90
784 796 4.433805 CCGTATCGAAACTGCTTTGTGTAC 60.434 45.833 0.00 0.00 0.00 2.90
785 797 3.788434 ATCGAAACTGCTTTGTGTACG 57.212 42.857 0.00 0.00 0.00 3.67
786 798 2.811855 TCGAAACTGCTTTGTGTACGA 58.188 42.857 0.00 0.00 0.00 3.43
787 799 3.386486 TCGAAACTGCTTTGTGTACGAT 58.614 40.909 0.00 0.00 0.00 3.73
788 800 3.183574 TCGAAACTGCTTTGTGTACGATG 59.816 43.478 0.00 0.00 0.00 3.84
789 801 3.059868 CGAAACTGCTTTGTGTACGATGT 60.060 43.478 0.00 0.00 0.00 3.06
790 802 4.551990 CGAAACTGCTTTGTGTACGATGTT 60.552 41.667 0.00 0.00 0.00 2.71
791 803 4.893424 AACTGCTTTGTGTACGATGTTT 57.107 36.364 0.00 0.00 0.00 2.83
792 804 4.893424 ACTGCTTTGTGTACGATGTTTT 57.107 36.364 0.00 0.00 0.00 2.43
793 805 4.844267 ACTGCTTTGTGTACGATGTTTTC 58.156 39.130 0.00 0.00 0.00 2.29
794 806 4.574828 ACTGCTTTGTGTACGATGTTTTCT 59.425 37.500 0.00 0.00 0.00 2.52
795 807 5.090652 TGCTTTGTGTACGATGTTTTCTC 57.909 39.130 0.00 0.00 0.00 2.87
796 808 4.814234 TGCTTTGTGTACGATGTTTTCTCT 59.186 37.500 0.00 0.00 0.00 3.10
797 809 5.986741 TGCTTTGTGTACGATGTTTTCTCTA 59.013 36.000 0.00 0.00 0.00 2.43
798 810 6.649141 TGCTTTGTGTACGATGTTTTCTCTAT 59.351 34.615 0.00 0.00 0.00 1.98
799 811 7.815549 TGCTTTGTGTACGATGTTTTCTCTATA 59.184 33.333 0.00 0.00 0.00 1.31
800 812 8.108782 GCTTTGTGTACGATGTTTTCTCTATAC 58.891 37.037 0.00 0.00 0.00 1.47
801 813 7.730067 TTGTGTACGATGTTTTCTCTATACG 57.270 36.000 0.00 0.00 0.00 3.06
802 814 7.075674 TGTGTACGATGTTTTCTCTATACGA 57.924 36.000 0.00 0.00 0.00 3.43
803 815 7.700505 TGTGTACGATGTTTTCTCTATACGAT 58.299 34.615 0.00 0.00 0.00 3.73
804 816 8.186163 TGTGTACGATGTTTTCTCTATACGATT 58.814 33.333 0.00 0.00 0.00 3.34
805 817 9.017669 GTGTACGATGTTTTCTCTATACGATTT 57.982 33.333 0.00 0.00 0.00 2.17
806 818 9.577110 TGTACGATGTTTTCTCTATACGATTTT 57.423 29.630 0.00 0.00 0.00 1.82
807 819 9.831054 GTACGATGTTTTCTCTATACGATTTTG 57.169 33.333 0.00 0.00 0.00 2.44
808 820 8.475331 ACGATGTTTTCTCTATACGATTTTGT 57.525 30.769 0.00 0.00 0.00 2.83
809 821 9.577110 ACGATGTTTTCTCTATACGATTTTGTA 57.423 29.630 0.00 0.00 0.00 2.41
810 822 9.831054 CGATGTTTTCTCTATACGATTTTGTAC 57.169 33.333 0.00 0.00 0.00 2.90
825 837 9.517609 ACGATTTTGTACTATAAGACACAGATC 57.482 33.333 0.00 0.00 0.00 2.75
826 838 8.682895 CGATTTTGTACTATAAGACACAGATCG 58.317 37.037 0.00 0.00 35.02 3.69
827 839 9.517609 GATTTTGTACTATAAGACACAGATCGT 57.482 33.333 0.00 0.00 0.00 3.73
828 840 9.871238 ATTTTGTACTATAAGACACAGATCGTT 57.129 29.630 0.00 0.00 0.00 3.85
829 841 8.906636 TTTGTACTATAAGACACAGATCGTTC 57.093 34.615 0.00 0.00 0.00 3.95
830 842 7.860918 TGTACTATAAGACACAGATCGTTCT 57.139 36.000 0.00 0.00 0.00 3.01
831 843 7.917597 TGTACTATAAGACACAGATCGTTCTC 58.082 38.462 0.00 0.00 0.00 2.87
832 844 7.551617 TGTACTATAAGACACAGATCGTTCTCA 59.448 37.037 0.00 0.00 0.00 3.27
833 845 7.392494 ACTATAAGACACAGATCGTTCTCAA 57.608 36.000 0.00 0.00 0.00 3.02
834 846 8.001881 ACTATAAGACACAGATCGTTCTCAAT 57.998 34.615 0.00 0.00 0.00 2.57
835 847 7.918033 ACTATAAGACACAGATCGTTCTCAATG 59.082 37.037 0.00 0.00 0.00 2.82
836 848 4.527509 AGACACAGATCGTTCTCAATGT 57.472 40.909 0.00 0.00 0.00 2.71
837 849 4.887748 AGACACAGATCGTTCTCAATGTT 58.112 39.130 0.00 0.00 0.00 2.71
838 850 5.300752 AGACACAGATCGTTCTCAATGTTT 58.699 37.500 0.00 0.00 0.00 2.83
839 851 5.178252 AGACACAGATCGTTCTCAATGTTTG 59.822 40.000 0.00 0.00 0.00 2.93
840 852 5.056480 ACACAGATCGTTCTCAATGTTTGA 58.944 37.500 0.00 0.00 38.17 2.69
850 862 3.500448 TCAATGTTTGAGCCCACTACA 57.500 42.857 0.00 0.00 34.08 2.74
851 863 3.146066 TCAATGTTTGAGCCCACTACAC 58.854 45.455 0.00 0.00 34.08 2.90
852 864 2.200373 ATGTTTGAGCCCACTACACC 57.800 50.000 0.00 0.00 0.00 4.16
853 865 0.840617 TGTTTGAGCCCACTACACCA 59.159 50.000 0.00 0.00 0.00 4.17
854 866 1.202758 TGTTTGAGCCCACTACACCAG 60.203 52.381 0.00 0.00 0.00 4.00
855 867 1.071699 GTTTGAGCCCACTACACCAGA 59.928 52.381 0.00 0.00 0.00 3.86
856 868 1.429930 TTGAGCCCACTACACCAGAA 58.570 50.000 0.00 0.00 0.00 3.02
857 869 0.685097 TGAGCCCACTACACCAGAAC 59.315 55.000 0.00 0.00 0.00 3.01
858 870 0.685097 GAGCCCACTACACCAGAACA 59.315 55.000 0.00 0.00 0.00 3.18
859 871 0.687354 AGCCCACTACACCAGAACAG 59.313 55.000 0.00 0.00 0.00 3.16
860 872 0.396811 GCCCACTACACCAGAACAGT 59.603 55.000 0.00 0.00 0.00 3.55
861 873 1.608283 GCCCACTACACCAGAACAGTC 60.608 57.143 0.00 0.00 0.00 3.51
862 874 1.971357 CCCACTACACCAGAACAGTCT 59.029 52.381 0.00 0.00 32.85 3.24
870 882 2.148687 CAGAACAGTCTGCTCGTGC 58.851 57.895 1.71 1.71 44.74 5.34
871 883 1.372251 AGAACAGTCTGCTCGTGCG 60.372 57.895 4.84 0.23 43.34 5.34
872 884 3.004734 GAACAGTCTGCTCGTGCGC 62.005 63.158 0.00 0.00 43.34 6.09
873 885 3.790334 AACAGTCTGCTCGTGCGCA 62.790 57.895 5.66 5.66 43.34 6.09
874 886 3.037833 CAGTCTGCTCGTGCGCAA 61.038 61.111 14.00 0.00 43.34 4.85
875 887 2.280119 AGTCTGCTCGTGCGCAAA 60.280 55.556 14.00 1.74 43.34 3.68
876 888 1.887242 AGTCTGCTCGTGCGCAAAA 60.887 52.632 14.00 1.28 43.34 2.44
877 889 1.207593 GTCTGCTCGTGCGCAAAAT 59.792 52.632 14.00 0.00 43.34 1.82
878 890 0.790866 GTCTGCTCGTGCGCAAAATC 60.791 55.000 14.00 2.42 43.34 2.17
879 891 1.860423 CTGCTCGTGCGCAAAATCG 60.860 57.895 14.00 12.45 43.34 3.34
880 892 2.173382 GCTCGTGCGCAAAATCGT 59.827 55.556 14.00 0.00 0.00 3.73
881 893 1.285668 TGCTCGTGCGCAAAATCGTA 61.286 50.000 14.00 0.93 43.34 3.43
882 894 0.026285 GCTCGTGCGCAAAATCGTAT 59.974 50.000 14.00 0.00 0.00 3.06
883 895 1.718504 CTCGTGCGCAAAATCGTATG 58.281 50.000 14.00 3.09 33.40 2.39
884 896 1.323235 CTCGTGCGCAAAATCGTATGA 59.677 47.619 14.00 0.00 37.66 2.15
885 897 1.727335 TCGTGCGCAAAATCGTATGAA 59.273 42.857 14.00 0.00 37.20 2.57
886 898 2.093638 CGTGCGCAAAATCGTATGAAG 58.906 47.619 14.00 0.00 33.84 3.02
887 899 2.473868 CGTGCGCAAAATCGTATGAAGT 60.474 45.455 14.00 0.00 33.84 3.01
888 900 3.488489 GTGCGCAAAATCGTATGAAGTT 58.512 40.909 14.00 0.00 0.00 2.66
889 901 3.911964 GTGCGCAAAATCGTATGAAGTTT 59.088 39.130 14.00 0.00 0.00 2.66
890 902 3.911365 TGCGCAAAATCGTATGAAGTTTG 59.089 39.130 8.16 15.32 36.76 2.93
891 903 4.155449 GCGCAAAATCGTATGAAGTTTGA 58.845 39.130 20.55 0.00 36.22 2.69
892 904 4.793216 GCGCAAAATCGTATGAAGTTTGAT 59.207 37.500 20.55 0.00 36.22 2.57
893 905 5.053025 GCGCAAAATCGTATGAAGTTTGATC 60.053 40.000 20.55 11.45 36.22 2.92
894 906 5.167803 CGCAAAATCGTATGAAGTTTGATCG 59.832 40.000 20.55 14.27 36.22 3.69
895 907 6.021596 GCAAAATCGTATGAAGTTTGATCGT 58.978 36.000 20.55 0.00 36.22 3.73
896 908 7.177407 GCAAAATCGTATGAAGTTTGATCGTA 58.823 34.615 20.55 0.00 36.22 3.43
897 909 7.162062 GCAAAATCGTATGAAGTTTGATCGTAC 59.838 37.037 20.55 0.00 36.22 3.67
898 910 6.823678 AATCGTATGAAGTTTGATCGTACC 57.176 37.500 0.00 0.00 36.41 3.34
899 911 5.571784 TCGTATGAAGTTTGATCGTACCT 57.428 39.130 0.00 0.00 36.41 3.08
900 912 6.682423 TCGTATGAAGTTTGATCGTACCTA 57.318 37.500 0.00 0.00 36.41 3.08
901 913 7.268199 TCGTATGAAGTTTGATCGTACCTAT 57.732 36.000 0.00 0.00 36.41 2.57
902 914 8.382030 TCGTATGAAGTTTGATCGTACCTATA 57.618 34.615 0.00 0.00 36.41 1.31
903 915 8.501580 TCGTATGAAGTTTGATCGTACCTATAG 58.498 37.037 0.00 0.00 36.41 1.31
904 916 7.270793 CGTATGAAGTTTGATCGTACCTATAGC 59.729 40.741 0.00 0.00 36.41 2.97
905 917 6.459670 TGAAGTTTGATCGTACCTATAGCA 57.540 37.500 0.00 0.00 0.00 3.49
906 918 6.504398 TGAAGTTTGATCGTACCTATAGCAG 58.496 40.000 0.00 0.00 0.00 4.24
907 919 4.872664 AGTTTGATCGTACCTATAGCAGC 58.127 43.478 0.00 0.00 0.00 5.25
908 920 3.554259 TTGATCGTACCTATAGCAGCG 57.446 47.619 0.00 0.00 0.00 5.18
909 921 1.199327 TGATCGTACCTATAGCAGCGC 59.801 52.381 0.00 0.00 0.00 5.92
910 922 1.469308 GATCGTACCTATAGCAGCGCT 59.531 52.381 2.64 2.64 43.41 5.92
911 923 0.873054 TCGTACCTATAGCAGCGCTC 59.127 55.000 7.13 2.24 40.44 5.03
1375 1393 3.427503 GGTCGTCGGAAGGTATAACGAAA 60.428 47.826 0.00 0.00 43.13 3.46
1421 1439 3.261897 AGAAATCTGTGAATCGGTCAGGT 59.738 43.478 0.00 0.00 36.74 4.00
1464 1482 9.199982 TGTCGAATTAGTCTTATTTCGTTTCTT 57.800 29.630 0.00 0.00 40.67 2.52
1466 1484 9.199982 TCGAATTAGTCTTATTTCGTTTCTTGT 57.800 29.630 0.00 0.00 40.67 3.16
1604 1623 3.303329 GCTGCGTATGTGTGGTATTCATG 60.303 47.826 0.00 0.00 0.00 3.07
1717 1737 2.793288 TGCTGGAATCATTGAGCTGA 57.207 45.000 0.00 0.00 32.41 4.26
1747 1767 5.009610 GCTTTTTCAAGTGAGTGGGTGATAA 59.990 40.000 0.00 0.00 31.86 1.75
1845 1865 7.438160 CGATAATGTGCCTTGTTCTACTTATGA 59.562 37.037 0.00 0.00 0.00 2.15
1847 1867 5.222079 TGTGCCTTGTTCTACTTATGACA 57.778 39.130 0.00 0.00 0.00 3.58
1974 1994 2.104963 AGAATTATGGAACGGAGGGAGC 59.895 50.000 0.00 0.00 0.00 4.70
2026 2046 7.712264 TTATTCTGTTTGGAGCATTTTTGTG 57.288 32.000 0.00 0.00 0.00 3.33
2088 2108 7.719633 TCCACTGCTATTTATTATTTCCTGACC 59.280 37.037 0.00 0.00 0.00 4.02
2451 2472 7.515514 AGTTCAAGGATCCCTTATCTGTCATAT 59.484 37.037 8.55 0.00 42.67 1.78
3154 3335 3.689649 CCACCTGTTCAGTATAGCAAACC 59.310 47.826 0.00 0.00 0.00 3.27
3181 3362 3.941483 AGGAATGATAGAAACCGCAACTG 59.059 43.478 0.00 0.00 0.00 3.16
3320 3531 1.131126 CAGAATTACGCACAAGCTGGG 59.869 52.381 0.00 0.00 39.10 4.45
3353 3564 5.230759 AGAGGTTATGGGAGGAATGATTCT 58.769 41.667 5.03 0.00 0.00 2.40
3361 3572 0.911769 AGGAATGATTCTGCCGACCA 59.088 50.000 5.03 0.00 0.00 4.02
3826 4064 5.829924 AGGTATGAAAGCCTTTGTCATATGG 59.170 40.000 2.13 0.00 36.80 2.74
3901 4139 8.893727 AGCGTTTAGATCATTAAAGTAGCAATT 58.106 29.630 0.00 0.00 0.00 2.32
3932 4170 8.202137 CACTCTTATATTTCTTTACGGAGGGAA 58.798 37.037 0.00 0.00 0.00 3.97
4092 4331 7.033185 GGTTTGAAGTTTGTATGTTGACTGTT 58.967 34.615 0.00 0.00 0.00 3.16
4093 4332 8.185505 GGTTTGAAGTTTGTATGTTGACTGTTA 58.814 33.333 0.00 0.00 0.00 2.41
4094 4333 9.006215 GTTTGAAGTTTGTATGTTGACTGTTAC 57.994 33.333 0.00 0.00 0.00 2.50
4095 4334 8.500753 TTGAAGTTTGTATGTTGACTGTTACT 57.499 30.769 0.00 0.00 0.00 2.24
4096 4335 8.138365 TGAAGTTTGTATGTTGACTGTTACTC 57.862 34.615 0.00 0.00 0.00 2.59
4097 4336 7.225931 TGAAGTTTGTATGTTGACTGTTACTCC 59.774 37.037 0.00 0.00 0.00 3.85
4098 4337 5.995897 AGTTTGTATGTTGACTGTTACTCCC 59.004 40.000 0.00 0.00 0.00 4.30
4099 4338 4.546829 TGTATGTTGACTGTTACTCCCC 57.453 45.455 0.00 0.00 0.00 4.81
4100 4339 3.262405 TGTATGTTGACTGTTACTCCCCC 59.738 47.826 0.00 0.00 0.00 5.40
4101 4340 2.112279 TGTTGACTGTTACTCCCCCT 57.888 50.000 0.00 0.00 0.00 4.79
4102 4341 1.697432 TGTTGACTGTTACTCCCCCTG 59.303 52.381 0.00 0.00 0.00 4.45
4103 4342 1.697982 GTTGACTGTTACTCCCCCTGT 59.302 52.381 0.00 0.00 0.00 4.00
4104 4343 2.105993 GTTGACTGTTACTCCCCCTGTT 59.894 50.000 0.00 0.00 0.00 3.16
4105 4344 1.975680 TGACTGTTACTCCCCCTGTTC 59.024 52.381 0.00 0.00 0.00 3.18
4106 4345 1.278413 GACTGTTACTCCCCCTGTTCC 59.722 57.143 0.00 0.00 0.00 3.62
4107 4346 1.358152 CTGTTACTCCCCCTGTTCCA 58.642 55.000 0.00 0.00 0.00 3.53
4108 4347 1.702957 CTGTTACTCCCCCTGTTCCAA 59.297 52.381 0.00 0.00 0.00 3.53
4109 4348 2.107552 CTGTTACTCCCCCTGTTCCAAA 59.892 50.000 0.00 0.00 0.00 3.28
4110 4349 2.514582 TGTTACTCCCCCTGTTCCAAAA 59.485 45.455 0.00 0.00 0.00 2.44
4111 4350 3.141272 TGTTACTCCCCCTGTTCCAAAAT 59.859 43.478 0.00 0.00 0.00 1.82
4112 4351 4.354387 TGTTACTCCCCCTGTTCCAAAATA 59.646 41.667 0.00 0.00 0.00 1.40
4113 4352 3.739401 ACTCCCCCTGTTCCAAAATAG 57.261 47.619 0.00 0.00 0.00 1.73
4114 4353 3.265489 ACTCCCCCTGTTCCAAAATAGA 58.735 45.455 0.00 0.00 0.00 1.98
4115 4354 3.858638 ACTCCCCCTGTTCCAAAATAGAT 59.141 43.478 0.00 0.00 0.00 1.98
4116 4355 4.210331 CTCCCCCTGTTCCAAAATAGATG 58.790 47.826 0.00 0.00 0.00 2.90
4117 4356 3.855599 TCCCCCTGTTCCAAAATAGATGA 59.144 43.478 0.00 0.00 0.00 2.92
4118 4357 3.954258 CCCCCTGTTCCAAAATAGATGAC 59.046 47.826 0.00 0.00 0.00 3.06
4119 4358 4.325344 CCCCCTGTTCCAAAATAGATGACT 60.325 45.833 0.00 0.00 0.00 3.41
4120 4359 4.884164 CCCCTGTTCCAAAATAGATGACTC 59.116 45.833 0.00 0.00 0.00 3.36
4121 4360 5.500234 CCCTGTTCCAAAATAGATGACTCA 58.500 41.667 0.00 0.00 0.00 3.41
4122 4361 5.945784 CCCTGTTCCAAAATAGATGACTCAA 59.054 40.000 0.00 0.00 0.00 3.02
4123 4362 6.127897 CCCTGTTCCAAAATAGATGACTCAAC 60.128 42.308 0.00 0.00 0.00 3.18
4124 4363 6.656693 CCTGTTCCAAAATAGATGACTCAACT 59.343 38.462 0.00 0.00 0.00 3.16
4125 4364 7.175641 CCTGTTCCAAAATAGATGACTCAACTT 59.824 37.037 0.00 0.00 0.00 2.66
4126 4365 8.463930 TGTTCCAAAATAGATGACTCAACTTT 57.536 30.769 0.00 0.00 0.00 2.66
4127 4366 8.352201 TGTTCCAAAATAGATGACTCAACTTTG 58.648 33.333 0.00 0.00 0.00 2.77
4128 4367 8.352942 GTTCCAAAATAGATGACTCAACTTTGT 58.647 33.333 0.00 0.00 0.00 2.83
4129 4368 9.567776 TTCCAAAATAGATGACTCAACTTTGTA 57.432 29.630 0.00 0.00 0.00 2.41
4130 4369 9.739276 TCCAAAATAGATGACTCAACTTTGTAT 57.261 29.630 0.00 0.00 0.00 2.29
4161 4400 8.973835 TTAGTACAAAGTTTGTTCAAAGTTGG 57.026 30.769 25.35 15.37 42.22 3.77
4162 4401 6.394809 AGTACAAAGTTTGTTCAAAGTTGGG 58.605 36.000 25.35 15.18 42.22 4.12
4163 4402 5.222079 ACAAAGTTTGTTCAAAGTTGGGT 57.778 34.783 15.58 15.62 42.22 4.51
4164 4403 5.234752 ACAAAGTTTGTTCAAAGTTGGGTC 58.765 37.500 15.58 0.52 42.22 4.46
4165 4404 5.221541 ACAAAGTTTGTTCAAAGTTGGGTCA 60.222 36.000 15.58 0.00 42.22 4.02
4166 4405 5.675684 AAGTTTGTTCAAAGTTGGGTCAT 57.324 34.783 14.86 0.00 0.00 3.06
4167 4406 5.262588 AGTTTGTTCAAAGTTGGGTCATC 57.737 39.130 0.00 0.00 0.00 2.92
4168 4407 4.956075 AGTTTGTTCAAAGTTGGGTCATCT 59.044 37.500 0.00 0.00 0.00 2.90
4169 4408 6.126409 AGTTTGTTCAAAGTTGGGTCATCTA 58.874 36.000 0.00 0.00 0.00 1.98
4170 4409 6.777580 AGTTTGTTCAAAGTTGGGTCATCTAT 59.222 34.615 0.00 0.00 0.00 1.98
4171 4410 7.287696 AGTTTGTTCAAAGTTGGGTCATCTATT 59.712 33.333 0.00 0.00 0.00 1.73
4172 4411 7.595819 TTGTTCAAAGTTGGGTCATCTATTT 57.404 32.000 0.00 0.00 0.00 1.40
4173 4412 7.595819 TGTTCAAAGTTGGGTCATCTATTTT 57.404 32.000 0.00 0.00 0.00 1.82
4174 4413 7.432869 TGTTCAAAGTTGGGTCATCTATTTTG 58.567 34.615 0.00 0.00 0.00 2.44
4175 4414 6.588719 TCAAAGTTGGGTCATCTATTTTGG 57.411 37.500 0.00 0.00 0.00 3.28
4176 4415 6.310941 TCAAAGTTGGGTCATCTATTTTGGA 58.689 36.000 0.00 0.00 0.00 3.53
4177 4416 6.780031 TCAAAGTTGGGTCATCTATTTTGGAA 59.220 34.615 0.00 0.00 0.00 3.53
4178 4417 6.590234 AAGTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
4179 4418 4.700213 AGTTGGGTCATCTATTTTGGAACG 59.300 41.667 0.00 0.00 0.00 3.95
4180 4419 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
4181 4420 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
4182 4421 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
4183 4422 3.877508 GGTCATCTATTTTGGAACGGAGG 59.122 47.826 0.00 0.00 0.00 4.30
4184 4423 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
4185 4424 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
4186 4425 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
4720 5027 6.415573 GGATGTTTCGTGTTTTATTTGTCGTT 59.584 34.615 0.00 0.00 0.00 3.85
4747 5054 9.132521 GAATTTGTGATGTATTCTTCCAACTTG 57.867 33.333 0.00 0.00 0.00 3.16
4749 5056 5.316167 TGTGATGTATTCTTCCAACTTGCT 58.684 37.500 0.00 0.00 0.00 3.91
4751 5058 6.939730 TGTGATGTATTCTTCCAACTTGCTAA 59.060 34.615 0.00 0.00 0.00 3.09
4753 5060 8.296713 GTGATGTATTCTTCCAACTTGCTAAAA 58.703 33.333 0.00 0.00 0.00 1.52
4754 5061 8.514594 TGATGTATTCTTCCAACTTGCTAAAAG 58.485 33.333 0.00 0.00 0.00 2.27
4844 5166 6.069994 TGCAATATTCCTTTATCATGGCTGA 58.930 36.000 0.00 0.00 35.41 4.26
4853 5175 5.012458 CCTTTATCATGGCTGAGGTGATCTA 59.988 44.000 0.00 0.00 34.12 1.98
4857 5179 0.824109 TGGCTGAGGTGATCTAACCG 59.176 55.000 0.00 0.00 45.53 4.44
4977 5307 2.599408 TTCCTGTTCGAGAGGTACCT 57.401 50.000 16.26 16.26 31.85 3.08
5171 5502 1.067565 CGAGCATACCTATGGACGCAT 60.068 52.381 0.00 0.00 34.32 4.73
5202 5533 2.906389 TCCTATCCATATGAGCACACCC 59.094 50.000 3.65 0.00 0.00 4.61
5247 5614 6.942005 AGATTGATGAAGTCACCACAAATACA 59.058 34.615 0.00 0.00 36.32 2.29
5251 5618 8.267620 TGATGAAGTCACCACAAATACATTAG 57.732 34.615 0.00 0.00 0.00 1.73
5266 5633 4.966965 ACATTAGAGTCGATGAGAACGT 57.033 40.909 14.11 0.00 0.00 3.99
5273 5640 5.230942 AGAGTCGATGAGAACGTCATTTTT 58.769 37.500 0.00 0.00 46.64 1.94
5278 5645 4.952043 CGATGAGAACGTCATTTTTCATCG 59.048 41.667 19.78 19.78 46.64 3.84
5281 5648 5.675970 TGAGAACGTCATTTTTCATCGAAC 58.324 37.500 0.00 0.00 0.00 3.95
5294 5669 3.792401 TCATCGAACGAACATTGCCTAT 58.208 40.909 0.12 0.00 0.00 2.57
5306 5681 9.337396 ACGAACATTGCCTATAATAAATCTTGA 57.663 29.630 0.00 0.00 0.00 3.02
5325 5700 9.986833 AATCTTGAAAAATGCAAACAACTAAAC 57.013 25.926 0.00 0.00 0.00 2.01
5326 5701 8.539770 TCTTGAAAAATGCAAACAACTAAACA 57.460 26.923 0.00 0.00 0.00 2.83
5327 5702 9.160496 TCTTGAAAAATGCAAACAACTAAACAT 57.840 25.926 0.00 0.00 0.00 2.71
5328 5703 9.212687 CTTGAAAAATGCAAACAACTAAACATG 57.787 29.630 0.00 0.00 0.00 3.21
5329 5704 8.484641 TGAAAAATGCAAACAACTAAACATGA 57.515 26.923 0.00 0.00 0.00 3.07
5364 5758 1.064825 GGAACTCCTTCCCCTCAACA 58.935 55.000 0.00 0.00 40.38 3.33
5365 5759 1.423921 GGAACTCCTTCCCCTCAACAA 59.576 52.381 0.00 0.00 40.38 2.83
5374 5769 2.414612 TCCCCTCAACAACAACTAGGT 58.585 47.619 0.00 0.00 0.00 3.08
5397 5792 2.367512 ACCTCATCCCCTCCAGGC 60.368 66.667 0.00 0.00 0.00 4.85
5415 5810 3.978723 CTCCGTCAGCCAGCTCGTG 62.979 68.421 0.00 0.00 0.00 4.35
5431 5826 4.161295 TGCATTCGCCTCCCCTCG 62.161 66.667 0.00 0.00 37.32 4.63
5444 5839 2.438434 CCTCGCGGCAAGGGAAAT 60.438 61.111 6.13 0.00 41.47 2.17
5445 5840 2.472909 CCTCGCGGCAAGGGAAATC 61.473 63.158 6.13 0.00 41.47 2.17
5446 5841 2.437716 TCGCGGCAAGGGAAATCC 60.438 61.111 6.13 0.00 38.97 3.01
5456 5851 3.899395 GGAAATCCCGGTTCCACG 58.101 61.111 15.62 0.00 43.52 4.94
5465 5860 4.324991 GGTTCCACGGCTTCGGGT 62.325 66.667 0.00 0.00 35.10 5.28
5466 5861 2.658422 GTTCCACGGCTTCGGGTA 59.342 61.111 0.00 0.00 35.10 3.69
5467 5862 1.219935 GTTCCACGGCTTCGGGTAT 59.780 57.895 0.00 0.00 35.10 2.73
5468 5863 0.392060 GTTCCACGGCTTCGGGTATT 60.392 55.000 0.00 0.00 35.10 1.89
5469 5864 1.134729 GTTCCACGGCTTCGGGTATTA 60.135 52.381 0.00 0.00 35.10 0.98
5470 5865 0.748450 TCCACGGCTTCGGGTATTAG 59.252 55.000 0.00 0.00 35.10 1.73
5471 5866 0.748450 CCACGGCTTCGGGTATTAGA 59.252 55.000 0.00 0.00 35.10 2.10
5472 5867 1.343465 CCACGGCTTCGGGTATTAGAT 59.657 52.381 0.00 0.00 35.10 1.98
5473 5868 2.224209 CCACGGCTTCGGGTATTAGATT 60.224 50.000 0.00 0.00 35.10 2.40
5474 5869 3.006110 CCACGGCTTCGGGTATTAGATTA 59.994 47.826 0.00 0.00 35.10 1.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 9.597137 AAGCCTTGCTTCCAAGAATCTAGACTT 62.597 40.741 0.00 0.00 46.77 3.01
23 24 8.218984 AAGCCTTGCTTCCAAGAATCTAGACT 62.219 42.308 0.00 0.00 46.77 3.24
24 25 6.091409 AAGCCTTGCTTCCAAGAATCTAGAC 61.091 44.000 0.00 0.00 46.77 2.59
25 26 4.018960 AAGCCTTGCTTCCAAGAATCTAGA 60.019 41.667 0.00 0.00 46.77 2.43
26 27 4.268359 AAGCCTTGCTTCCAAGAATCTAG 58.732 43.478 5.09 0.00 46.77 2.43
27 28 4.307032 AAGCCTTGCTTCCAAGAATCTA 57.693 40.909 5.09 0.00 46.77 1.98
28 29 3.166560 AAGCCTTGCTTCCAAGAATCT 57.833 42.857 5.09 0.00 46.77 2.40
29 30 3.758554 TGTAAGCCTTGCTTCCAAGAATC 59.241 43.478 4.33 0.00 46.77 2.52
30 31 3.766545 TGTAAGCCTTGCTTCCAAGAAT 58.233 40.909 4.33 0.00 46.77 2.40
31 32 3.222173 TGTAAGCCTTGCTTCCAAGAA 57.778 42.857 4.33 0.00 46.77 2.52
32 33 2.949177 TGTAAGCCTTGCTTCCAAGA 57.051 45.000 4.33 0.00 46.77 3.02
33 34 3.084039 TGATGTAAGCCTTGCTTCCAAG 58.916 45.455 4.33 0.00 46.77 3.61
34 35 2.819608 GTGATGTAAGCCTTGCTTCCAA 59.180 45.455 4.33 0.00 46.77 3.53
35 36 2.436417 GTGATGTAAGCCTTGCTTCCA 58.564 47.619 4.33 0.15 46.77 3.53
36 37 1.398390 CGTGATGTAAGCCTTGCTTCC 59.602 52.381 4.33 0.00 46.77 3.46
37 38 2.346803 TCGTGATGTAAGCCTTGCTTC 58.653 47.619 4.33 0.07 46.77 3.86
39 40 2.169352 AGATCGTGATGTAAGCCTTGCT 59.831 45.455 0.00 0.00 42.56 3.91
40 41 2.555199 AGATCGTGATGTAAGCCTTGC 58.445 47.619 0.00 0.00 0.00 4.01
41 42 4.618912 CGATAGATCGTGATGTAAGCCTTG 59.381 45.833 3.72 0.00 44.74 3.61
42 43 4.799678 CGATAGATCGTGATGTAAGCCTT 58.200 43.478 3.72 0.00 44.74 4.35
43 44 4.427096 CGATAGATCGTGATGTAAGCCT 57.573 45.455 3.72 0.00 44.74 4.58
65 66 3.624326 TTTGGTTCGATGCTTGACAAG 57.376 42.857 11.02 11.02 0.00 3.16
66 67 3.243367 CCTTTTGGTTCGATGCTTGACAA 60.243 43.478 0.00 0.00 34.07 3.18
67 68 2.293122 CCTTTTGGTTCGATGCTTGACA 59.707 45.455 0.00 0.00 34.07 3.58
68 69 2.552315 TCCTTTTGGTTCGATGCTTGAC 59.448 45.455 0.00 0.00 41.38 3.18
69 70 2.857483 TCCTTTTGGTTCGATGCTTGA 58.143 42.857 0.00 0.00 41.38 3.02
70 71 3.253188 TCTTCCTTTTGGTTCGATGCTTG 59.747 43.478 0.00 0.00 41.38 4.01
71 72 3.486383 TCTTCCTTTTGGTTCGATGCTT 58.514 40.909 0.00 0.00 41.38 3.91
72 73 3.140325 TCTTCCTTTTGGTTCGATGCT 57.860 42.857 0.00 0.00 41.38 3.79
73 74 3.004315 TGTTCTTCCTTTTGGTTCGATGC 59.996 43.478 0.00 0.00 41.38 3.91
74 75 4.829064 TGTTCTTCCTTTTGGTTCGATG 57.171 40.909 0.00 0.00 41.38 3.84
75 76 5.772521 CAATGTTCTTCCTTTTGGTTCGAT 58.227 37.500 0.00 0.00 41.38 3.59
76 77 4.499019 GCAATGTTCTTCCTTTTGGTTCGA 60.499 41.667 0.00 0.00 41.38 3.71
77 78 3.735746 GCAATGTTCTTCCTTTTGGTTCG 59.264 43.478 0.00 0.00 41.38 3.95
78 79 4.058124 GGCAATGTTCTTCCTTTTGGTTC 58.942 43.478 0.00 0.00 41.38 3.62
79 80 3.711190 AGGCAATGTTCTTCCTTTTGGTT 59.289 39.130 0.00 0.00 41.38 3.67
80 81 3.070015 CAGGCAATGTTCTTCCTTTTGGT 59.930 43.478 0.00 0.00 41.38 3.67
81 82 3.656559 CAGGCAATGTTCTTCCTTTTGG 58.343 45.455 0.00 0.00 42.21 3.28
82 83 3.062042 GCAGGCAATGTTCTTCCTTTTG 58.938 45.455 0.00 0.00 0.00 2.44
83 84 2.037641 GGCAGGCAATGTTCTTCCTTTT 59.962 45.455 0.00 0.00 0.00 2.27
84 85 1.620323 GGCAGGCAATGTTCTTCCTTT 59.380 47.619 0.00 0.00 0.00 3.11
85 86 1.203100 AGGCAGGCAATGTTCTTCCTT 60.203 47.619 0.00 0.00 0.00 3.36
86 87 0.407139 AGGCAGGCAATGTTCTTCCT 59.593 50.000 0.00 0.00 0.00 3.36
87 88 0.529378 CAGGCAGGCAATGTTCTTCC 59.471 55.000 0.00 0.00 0.00 3.46
88 89 0.529378 CCAGGCAGGCAATGTTCTTC 59.471 55.000 0.00 0.00 0.00 2.87
89 90 0.112995 TCCAGGCAGGCAATGTTCTT 59.887 50.000 0.00 0.00 37.29 2.52
90 91 0.323178 CTCCAGGCAGGCAATGTTCT 60.323 55.000 0.00 0.00 37.29 3.01
91 92 1.941999 GCTCCAGGCAGGCAATGTTC 61.942 60.000 0.00 0.00 41.35 3.18
92 93 1.980772 GCTCCAGGCAGGCAATGTT 60.981 57.895 0.00 0.00 41.35 2.71
93 94 2.362120 GCTCCAGGCAGGCAATGT 60.362 61.111 0.00 0.00 41.35 2.71
102 103 1.700955 ATTCATCCATTGCTCCAGGC 58.299 50.000 0.00 0.00 42.22 4.85
115 116 1.474330 AAGGCGGGTTGGAATTCATC 58.526 50.000 7.93 0.00 0.00 2.92
116 117 2.241176 TCTAAGGCGGGTTGGAATTCAT 59.759 45.455 7.93 0.00 0.00 2.57
117 118 1.631388 TCTAAGGCGGGTTGGAATTCA 59.369 47.619 7.93 0.00 0.00 2.57
118 119 2.014857 GTCTAAGGCGGGTTGGAATTC 58.985 52.381 0.00 0.00 0.00 2.17
119 120 1.340697 GGTCTAAGGCGGGTTGGAATT 60.341 52.381 0.00 0.00 0.00 2.17
120 121 0.255033 GGTCTAAGGCGGGTTGGAAT 59.745 55.000 0.00 0.00 0.00 3.01
121 122 0.838987 AGGTCTAAGGCGGGTTGGAA 60.839 55.000 0.00 0.00 0.00 3.53
122 123 0.838987 AAGGTCTAAGGCGGGTTGGA 60.839 55.000 0.00 0.00 0.00 3.53
123 124 0.037734 AAAGGTCTAAGGCGGGTTGG 59.962 55.000 0.00 0.00 0.00 3.77
124 125 1.450025 GAAAGGTCTAAGGCGGGTTG 58.550 55.000 0.00 0.00 0.00 3.77
125 126 0.327259 GGAAAGGTCTAAGGCGGGTT 59.673 55.000 0.00 0.00 0.00 4.11
126 127 0.838987 TGGAAAGGTCTAAGGCGGGT 60.839 55.000 0.00 0.00 0.00 5.28
127 128 0.107654 CTGGAAAGGTCTAAGGCGGG 60.108 60.000 0.00 0.00 0.00 6.13
128 129 0.613777 ACTGGAAAGGTCTAAGGCGG 59.386 55.000 0.00 0.00 0.00 6.13
129 130 2.474410 AACTGGAAAGGTCTAAGGCG 57.526 50.000 0.00 0.00 0.00 5.52
130 131 4.648651 TGTTAACTGGAAAGGTCTAAGGC 58.351 43.478 7.22 0.00 0.00 4.35
131 132 9.110502 GATTATGTTAACTGGAAAGGTCTAAGG 57.889 37.037 7.22 0.00 0.00 2.69
132 133 9.110502 GGATTATGTTAACTGGAAAGGTCTAAG 57.889 37.037 7.22 0.00 0.00 2.18
133 134 8.832735 AGGATTATGTTAACTGGAAAGGTCTAA 58.167 33.333 7.22 0.00 0.00 2.10
134 135 8.388656 AGGATTATGTTAACTGGAAAGGTCTA 57.611 34.615 7.22 0.00 0.00 2.59
135 136 7.037586 TGAGGATTATGTTAACTGGAAAGGTCT 60.038 37.037 7.22 0.00 0.00 3.85
136 137 7.110155 TGAGGATTATGTTAACTGGAAAGGTC 58.890 38.462 7.22 0.00 0.00 3.85
137 138 7.027874 TGAGGATTATGTTAACTGGAAAGGT 57.972 36.000 7.22 0.00 0.00 3.50
138 139 7.557719 ACATGAGGATTATGTTAACTGGAAAGG 59.442 37.037 7.22 0.00 35.32 3.11
139 140 8.511604 ACATGAGGATTATGTTAACTGGAAAG 57.488 34.615 7.22 0.00 35.32 2.62
140 141 8.877864 AACATGAGGATTATGTTAACTGGAAA 57.122 30.769 7.22 0.00 44.48 3.13
141 142 9.613428 CTAACATGAGGATTATGTTAACTGGAA 57.387 33.333 7.22 0.00 45.28 3.53
142 143 8.988060 TCTAACATGAGGATTATGTTAACTGGA 58.012 33.333 7.22 3.86 45.28 3.86
143 144 9.265901 CTCTAACATGAGGATTATGTTAACTGG 57.734 37.037 7.22 2.04 45.28 4.00
149 150 9.965902 AGTTTTCTCTAACATGAGGATTATGTT 57.034 29.630 0.00 8.23 46.95 2.71
154 155 8.598041 ACACTAGTTTTCTCTAACATGAGGATT 58.402 33.333 0.00 0.00 34.98 3.01
155 156 8.140112 ACACTAGTTTTCTCTAACATGAGGAT 57.860 34.615 0.00 0.00 34.98 3.24
156 157 7.540474 ACACTAGTTTTCTCTAACATGAGGA 57.460 36.000 0.00 0.00 34.98 3.71
157 158 7.118390 CCAACACTAGTTTTCTCTAACATGAGG 59.882 40.741 0.00 0.00 35.28 3.86
158 159 7.872993 TCCAACACTAGTTTTCTCTAACATGAG 59.127 37.037 0.00 0.00 35.28 2.90
159 160 7.732025 TCCAACACTAGTTTTCTCTAACATGA 58.268 34.615 0.00 0.00 35.28 3.07
160 161 7.962964 TCCAACACTAGTTTTCTCTAACATG 57.037 36.000 0.00 0.00 35.28 3.21
161 162 9.877178 CTATCCAACACTAGTTTTCTCTAACAT 57.123 33.333 0.00 0.00 35.28 2.71
162 163 9.085645 TCTATCCAACACTAGTTTTCTCTAACA 57.914 33.333 0.00 0.00 35.28 2.41
165 166 9.702253 AGATCTATCCAACACTAGTTTTCTCTA 57.298 33.333 0.00 0.00 35.28 2.43
166 167 8.602472 AGATCTATCCAACACTAGTTTTCTCT 57.398 34.615 0.00 0.00 35.28 3.10
167 168 9.660180 AAAGATCTATCCAACACTAGTTTTCTC 57.340 33.333 0.00 0.00 35.28 2.87
168 169 9.442047 CAAAGATCTATCCAACACTAGTTTTCT 57.558 33.333 0.00 0.00 35.28 2.52
169 170 9.436957 TCAAAGATCTATCCAACACTAGTTTTC 57.563 33.333 0.00 0.00 35.28 2.29
170 171 9.442047 CTCAAAGATCTATCCAACACTAGTTTT 57.558 33.333 0.00 0.00 35.28 2.43
171 172 8.816894 TCTCAAAGATCTATCCAACACTAGTTT 58.183 33.333 0.00 0.00 35.28 2.66
172 173 8.367660 TCTCAAAGATCTATCCAACACTAGTT 57.632 34.615 0.00 0.00 38.88 2.24
173 174 7.962995 TCTCAAAGATCTATCCAACACTAGT 57.037 36.000 0.00 0.00 0.00 2.57
174 175 8.253810 TGTTCTCAAAGATCTATCCAACACTAG 58.746 37.037 0.00 0.00 0.00 2.57
175 176 8.134202 TGTTCTCAAAGATCTATCCAACACTA 57.866 34.615 0.00 0.00 0.00 2.74
176 177 7.009179 TGTTCTCAAAGATCTATCCAACACT 57.991 36.000 0.00 0.00 0.00 3.55
177 178 7.335422 ACATGTTCTCAAAGATCTATCCAACAC 59.665 37.037 0.00 0.00 0.00 3.32
178 179 7.397221 ACATGTTCTCAAAGATCTATCCAACA 58.603 34.615 0.00 2.81 0.00 3.33
179 180 7.856145 ACATGTTCTCAAAGATCTATCCAAC 57.144 36.000 0.00 0.00 0.00 3.77
180 181 8.868522 AAACATGTTCTCAAAGATCTATCCAA 57.131 30.769 12.39 0.00 0.00 3.53
181 182 8.868522 AAAACATGTTCTCAAAGATCTATCCA 57.131 30.769 12.39 0.00 0.00 3.41
208 209 9.959749 GAATGTGTACAATCAAAGAAAAGGTAA 57.040 29.630 0.00 0.00 0.00 2.85
209 210 9.126151 TGAATGTGTACAATCAAAGAAAAGGTA 57.874 29.630 0.00 0.00 33.26 3.08
210 211 7.920682 GTGAATGTGTACAATCAAAGAAAAGGT 59.079 33.333 0.00 0.00 37.50 3.50
211 212 8.137437 AGTGAATGTGTACAATCAAAGAAAAGG 58.863 33.333 0.00 0.00 37.50 3.11
212 213 9.520204 AAGTGAATGTGTACAATCAAAGAAAAG 57.480 29.630 0.00 0.00 37.50 2.27
213 214 9.868277 AAAGTGAATGTGTACAATCAAAGAAAA 57.132 25.926 0.00 0.00 37.50 2.29
214 215 9.868277 AAAAGTGAATGTGTACAATCAAAGAAA 57.132 25.926 0.00 0.00 37.50 2.52
252 253 9.988350 CGAAACTAAACTATAGTTCTACGGTAA 57.012 33.333 18.28 0.00 36.82 2.85
253 254 8.612619 CCGAAACTAAACTATAGTTCTACGGTA 58.387 37.037 18.28 5.58 39.96 4.02
254 255 7.415653 CCCGAAACTAAACTATAGTTCTACGGT 60.416 40.741 25.60 16.52 41.29 4.83
255 256 6.914757 CCCGAAACTAAACTATAGTTCTACGG 59.085 42.308 18.28 21.70 41.79 4.02
256 257 6.914757 CCCCGAAACTAAACTATAGTTCTACG 59.085 42.308 18.28 15.86 36.82 3.51
257 258 7.147828 ACCCCCGAAACTAAACTATAGTTCTAC 60.148 40.741 18.28 6.80 36.82 2.59
258 259 6.897413 ACCCCCGAAACTAAACTATAGTTCTA 59.103 38.462 18.28 11.51 36.82 2.10
259 260 5.723405 ACCCCCGAAACTAAACTATAGTTCT 59.277 40.000 18.28 11.03 36.82 3.01
260 261 5.982356 ACCCCCGAAACTAAACTATAGTTC 58.018 41.667 18.28 4.41 36.82 3.01
261 262 7.494922 TTACCCCCGAAACTAAACTATAGTT 57.505 36.000 12.50 12.50 39.24 2.24
262 263 7.494922 TTTACCCCCGAAACTAAACTATAGT 57.505 36.000 0.00 0.00 0.00 2.12
263 264 8.791327 TTTTTACCCCCGAAACTAAACTATAG 57.209 34.615 0.00 0.00 0.00 1.31
329 330 8.184249 ACCTCCCATGAATTATATAGACACCTA 58.816 37.037 0.00 0.00 0.00 3.08
449 450 4.029809 GCCCACCTACCCGCTTGT 62.030 66.667 0.00 0.00 0.00 3.16
495 496 2.151202 GTCTTCCGCCACAAATGAAGA 58.849 47.619 0.00 0.00 40.51 2.87
497 498 2.151202 GAGTCTTCCGCCACAAATGAA 58.849 47.619 0.00 0.00 0.00 2.57
498 499 1.610624 GGAGTCTTCCGCCACAAATGA 60.611 52.381 0.00 0.00 32.79 2.57
499 500 0.804989 GGAGTCTTCCGCCACAAATG 59.195 55.000 0.00 0.00 32.79 2.32
500 501 3.249687 GGAGTCTTCCGCCACAAAT 57.750 52.632 0.00 0.00 32.79 2.32
501 502 4.792087 GGAGTCTTCCGCCACAAA 57.208 55.556 0.00 0.00 32.79 2.83
523 524 5.889853 AGAAATGTCACATCAGTATTGCCAT 59.110 36.000 0.00 0.00 0.00 4.40
524 525 5.255687 AGAAATGTCACATCAGTATTGCCA 58.744 37.500 0.00 0.00 0.00 4.92
549 550 6.819284 TGGTCTCTTTTCGTAAACCTTTCTA 58.181 36.000 0.00 0.00 0.00 2.10
557 558 4.514066 GGAAAGCTGGTCTCTTTTCGTAAA 59.486 41.667 0.00 0.00 34.24 2.01
558 559 4.062991 GGAAAGCTGGTCTCTTTTCGTAA 58.937 43.478 0.00 0.00 34.24 3.18
559 560 3.556423 GGGAAAGCTGGTCTCTTTTCGTA 60.556 47.826 0.00 0.00 34.24 3.43
560 561 2.495084 GGAAAGCTGGTCTCTTTTCGT 58.505 47.619 0.00 0.00 34.24 3.85
561 562 1.807142 GGGAAAGCTGGTCTCTTTTCG 59.193 52.381 0.00 0.00 34.24 3.46
562 563 2.554462 GTGGGAAAGCTGGTCTCTTTTC 59.446 50.000 0.00 0.00 34.24 2.29
563 564 2.587522 GTGGGAAAGCTGGTCTCTTTT 58.412 47.619 0.00 0.00 34.24 2.27
564 565 1.543429 CGTGGGAAAGCTGGTCTCTTT 60.543 52.381 0.00 0.00 36.55 2.52
565 566 0.035458 CGTGGGAAAGCTGGTCTCTT 59.965 55.000 0.00 0.00 0.00 2.85
566 567 1.674057 CGTGGGAAAGCTGGTCTCT 59.326 57.895 0.00 0.00 0.00 3.10
567 568 1.376037 CCGTGGGAAAGCTGGTCTC 60.376 63.158 0.00 0.00 0.00 3.36
568 569 2.147387 ACCGTGGGAAAGCTGGTCT 61.147 57.895 0.00 0.00 0.00 3.85
569 570 1.966451 CACCGTGGGAAAGCTGGTC 60.966 63.158 0.00 0.00 0.00 4.02
570 571 2.113139 CACCGTGGGAAAGCTGGT 59.887 61.111 0.00 0.00 0.00 4.00
574 575 1.376037 CCTCTCACCGTGGGAAAGC 60.376 63.158 1.97 0.00 0.00 3.51
660 668 2.482864 CATCACAAAGTTGGGCCAAAC 58.517 47.619 22.82 15.88 0.00 2.93
666 674 2.746362 GAGAGAGCATCACAAAGTTGGG 59.254 50.000 0.00 0.00 37.82 4.12
669 677 6.312426 CGAATAAGAGAGAGCATCACAAAGTT 59.688 38.462 0.00 0.00 37.82 2.66
671 679 5.809562 ACGAATAAGAGAGAGCATCACAAAG 59.190 40.000 0.00 0.00 37.82 2.77
672 680 5.724328 ACGAATAAGAGAGAGCATCACAAA 58.276 37.500 0.00 0.00 37.82 2.83
675 683 5.181690 AGACGAATAAGAGAGAGCATCAC 57.818 43.478 0.00 0.00 37.82 3.06
704 714 0.036765 ATCAACAAGGCCGCGTAGAA 60.037 50.000 4.92 0.00 0.00 2.10
758 770 3.810941 ACAAAGCAGTTTCGATACGGAAA 59.189 39.130 10.05 0.00 33.73 3.13
759 771 3.185594 CACAAAGCAGTTTCGATACGGAA 59.814 43.478 10.05 0.00 0.00 4.30
760 772 2.734606 CACAAAGCAGTTTCGATACGGA 59.265 45.455 10.05 0.00 0.00 4.69
761 773 2.478894 ACACAAAGCAGTTTCGATACGG 59.521 45.455 2.01 2.01 0.00 4.02
762 774 3.788434 ACACAAAGCAGTTTCGATACG 57.212 42.857 0.15 0.00 0.00 3.06
763 775 4.383649 TCGTACACAAAGCAGTTTCGATAC 59.616 41.667 0.00 0.00 0.00 2.24
764 776 4.548494 TCGTACACAAAGCAGTTTCGATA 58.452 39.130 0.00 0.00 0.00 2.92
765 777 3.386486 TCGTACACAAAGCAGTTTCGAT 58.614 40.909 0.00 0.00 0.00 3.59
766 778 2.811855 TCGTACACAAAGCAGTTTCGA 58.188 42.857 0.00 0.00 0.00 3.71
767 779 3.059868 ACATCGTACACAAAGCAGTTTCG 60.060 43.478 0.00 0.00 0.00 3.46
768 780 4.468095 ACATCGTACACAAAGCAGTTTC 57.532 40.909 0.00 0.00 0.00 2.78
769 781 4.893424 AACATCGTACACAAAGCAGTTT 57.107 36.364 0.00 0.00 0.00 2.66
770 782 4.893424 AAACATCGTACACAAAGCAGTT 57.107 36.364 0.00 0.00 0.00 3.16
771 783 4.574828 AGAAAACATCGTACACAAAGCAGT 59.425 37.500 0.00 0.00 0.00 4.40
772 784 5.050091 AGAGAAAACATCGTACACAAAGCAG 60.050 40.000 0.00 0.00 0.00 4.24
773 785 4.814234 AGAGAAAACATCGTACACAAAGCA 59.186 37.500 0.00 0.00 0.00 3.91
774 786 5.344207 AGAGAAAACATCGTACACAAAGC 57.656 39.130 0.00 0.00 0.00 3.51
775 787 8.311822 CGTATAGAGAAAACATCGTACACAAAG 58.688 37.037 0.00 0.00 0.00 2.77
776 788 8.022550 TCGTATAGAGAAAACATCGTACACAAA 58.977 33.333 0.00 0.00 0.00 2.83
777 789 7.529158 TCGTATAGAGAAAACATCGTACACAA 58.471 34.615 0.00 0.00 0.00 3.33
778 790 7.075674 TCGTATAGAGAAAACATCGTACACA 57.924 36.000 0.00 0.00 0.00 3.72
779 791 8.557869 AATCGTATAGAGAAAACATCGTACAC 57.442 34.615 0.00 0.00 0.00 2.90
780 792 9.577110 AAAATCGTATAGAGAAAACATCGTACA 57.423 29.630 0.00 0.00 0.00 2.90
781 793 9.831054 CAAAATCGTATAGAGAAAACATCGTAC 57.169 33.333 0.00 0.00 0.00 3.67
782 794 9.577110 ACAAAATCGTATAGAGAAAACATCGTA 57.423 29.630 0.00 0.00 0.00 3.43
783 795 8.475331 ACAAAATCGTATAGAGAAAACATCGT 57.525 30.769 0.00 0.00 0.00 3.73
784 796 9.831054 GTACAAAATCGTATAGAGAAAACATCG 57.169 33.333 0.00 0.00 0.00 3.84
799 811 9.517609 GATCTGTGTCTTATAGTACAAAATCGT 57.482 33.333 0.00 0.00 0.00 3.73
800 812 8.682895 CGATCTGTGTCTTATAGTACAAAATCG 58.317 37.037 0.00 0.00 34.99 3.34
801 813 9.517609 ACGATCTGTGTCTTATAGTACAAAATC 57.482 33.333 0.00 0.00 0.00 2.17
802 814 9.871238 AACGATCTGTGTCTTATAGTACAAAAT 57.129 29.630 0.00 0.00 0.00 1.82
803 815 9.350357 GAACGATCTGTGTCTTATAGTACAAAA 57.650 33.333 0.00 0.00 0.00 2.44
804 816 8.737175 AGAACGATCTGTGTCTTATAGTACAAA 58.263 33.333 0.00 0.00 33.59 2.83
805 817 8.277490 AGAACGATCTGTGTCTTATAGTACAA 57.723 34.615 0.00 0.00 33.59 2.41
806 818 7.551617 TGAGAACGATCTGTGTCTTATAGTACA 59.448 37.037 0.00 0.00 35.54 2.90
807 819 7.917597 TGAGAACGATCTGTGTCTTATAGTAC 58.082 38.462 0.00 0.00 35.54 2.73
808 820 8.502105 TTGAGAACGATCTGTGTCTTATAGTA 57.498 34.615 0.00 0.00 35.54 1.82
809 821 7.392494 TTGAGAACGATCTGTGTCTTATAGT 57.608 36.000 0.00 0.00 35.54 2.12
810 822 7.918033 ACATTGAGAACGATCTGTGTCTTATAG 59.082 37.037 0.00 0.00 35.54 1.31
811 823 7.772166 ACATTGAGAACGATCTGTGTCTTATA 58.228 34.615 0.00 0.00 35.54 0.98
812 824 6.634805 ACATTGAGAACGATCTGTGTCTTAT 58.365 36.000 0.00 0.00 35.54 1.73
813 825 6.025749 ACATTGAGAACGATCTGTGTCTTA 57.974 37.500 0.00 0.00 35.54 2.10
814 826 4.887748 ACATTGAGAACGATCTGTGTCTT 58.112 39.130 0.00 0.00 35.54 3.01
815 827 4.527509 ACATTGAGAACGATCTGTGTCT 57.472 40.909 0.00 0.00 35.54 3.41
816 828 5.177511 TCAAACATTGAGAACGATCTGTGTC 59.822 40.000 0.00 0.00 35.54 3.67
817 829 5.056480 TCAAACATTGAGAACGATCTGTGT 58.944 37.500 0.00 0.00 35.54 3.72
818 830 5.596268 TCAAACATTGAGAACGATCTGTG 57.404 39.130 0.00 0.00 35.54 3.66
830 842 3.146066 GTGTAGTGGGCTCAAACATTGA 58.854 45.455 6.32 0.00 38.17 2.57
831 843 2.228822 GGTGTAGTGGGCTCAAACATTG 59.771 50.000 6.32 0.00 0.00 2.82
832 844 2.158534 TGGTGTAGTGGGCTCAAACATT 60.159 45.455 6.32 0.00 0.00 2.71
833 845 1.423541 TGGTGTAGTGGGCTCAAACAT 59.576 47.619 6.32 0.00 0.00 2.71
834 846 0.840617 TGGTGTAGTGGGCTCAAACA 59.159 50.000 0.00 0.00 0.00 2.83
835 847 1.071699 TCTGGTGTAGTGGGCTCAAAC 59.928 52.381 0.00 0.00 0.00 2.93
836 848 1.429930 TCTGGTGTAGTGGGCTCAAA 58.570 50.000 0.00 0.00 0.00 2.69
837 849 1.071699 GTTCTGGTGTAGTGGGCTCAA 59.928 52.381 0.00 0.00 0.00 3.02
838 850 0.685097 GTTCTGGTGTAGTGGGCTCA 59.315 55.000 0.00 0.00 0.00 4.26
839 851 0.685097 TGTTCTGGTGTAGTGGGCTC 59.315 55.000 0.00 0.00 0.00 4.70
840 852 0.687354 CTGTTCTGGTGTAGTGGGCT 59.313 55.000 0.00 0.00 0.00 5.19
841 853 0.396811 ACTGTTCTGGTGTAGTGGGC 59.603 55.000 0.00 0.00 0.00 5.36
842 854 1.971357 AGACTGTTCTGGTGTAGTGGG 59.029 52.381 0.00 0.00 0.00 4.61
843 855 3.032017 CAGACTGTTCTGGTGTAGTGG 57.968 52.381 0.00 0.00 45.06 4.00
853 865 1.372251 CGCACGAGCAGACTGTTCT 60.372 57.895 16.13 0.14 42.27 3.01
854 866 3.004734 GCGCACGAGCAGACTGTTC 62.005 63.158 0.30 9.13 42.27 3.18
855 867 3.038417 GCGCACGAGCAGACTGTT 61.038 61.111 0.30 0.00 42.27 3.16
856 868 4.284860 TGCGCACGAGCAGACTGT 62.285 61.111 5.66 0.00 42.92 3.55
862 874 1.285668 TACGATTTTGCGCACGAGCA 61.286 50.000 22.66 0.00 46.54 4.26
863 875 0.026285 ATACGATTTTGCGCACGAGC 59.974 50.000 22.66 10.84 37.71 5.03
864 876 1.323235 TCATACGATTTTGCGCACGAG 59.677 47.619 22.66 12.54 33.86 4.18
865 877 1.351153 TCATACGATTTTGCGCACGA 58.649 45.000 22.66 9.64 33.86 4.35
866 878 2.093638 CTTCATACGATTTTGCGCACG 58.906 47.619 11.12 13.88 33.86 5.34
867 879 3.117434 ACTTCATACGATTTTGCGCAC 57.883 42.857 11.12 0.00 33.86 5.34
868 880 3.822594 AACTTCATACGATTTTGCGCA 57.177 38.095 5.66 5.66 33.86 6.09
869 881 4.155449 TCAAACTTCATACGATTTTGCGC 58.845 39.130 0.00 0.00 33.86 6.09
870 882 5.167803 CGATCAAACTTCATACGATTTTGCG 59.832 40.000 0.00 0.00 30.10 4.85
871 883 6.021596 ACGATCAAACTTCATACGATTTTGC 58.978 36.000 0.00 0.00 30.10 3.68
872 884 7.634817 GGTACGATCAAACTTCATACGATTTTG 59.365 37.037 0.00 0.00 0.00 2.44
873 885 7.548075 AGGTACGATCAAACTTCATACGATTTT 59.452 33.333 0.00 0.00 0.00 1.82
874 886 7.039882 AGGTACGATCAAACTTCATACGATTT 58.960 34.615 0.00 0.00 0.00 2.17
875 887 6.570692 AGGTACGATCAAACTTCATACGATT 58.429 36.000 0.00 0.00 0.00 3.34
876 888 6.145338 AGGTACGATCAAACTTCATACGAT 57.855 37.500 0.00 0.00 0.00 3.73
877 889 5.571784 AGGTACGATCAAACTTCATACGA 57.428 39.130 0.00 0.00 0.00 3.43
878 890 7.270793 GCTATAGGTACGATCAAACTTCATACG 59.729 40.741 1.04 0.00 0.00 3.06
879 891 8.080417 TGCTATAGGTACGATCAAACTTCATAC 58.920 37.037 1.04 0.00 0.00 2.39
880 892 8.173542 TGCTATAGGTACGATCAAACTTCATA 57.826 34.615 1.04 0.00 0.00 2.15
881 893 7.050970 TGCTATAGGTACGATCAAACTTCAT 57.949 36.000 1.04 0.00 0.00 2.57
882 894 6.459670 TGCTATAGGTACGATCAAACTTCA 57.540 37.500 1.04 0.00 0.00 3.02
883 895 5.402867 GCTGCTATAGGTACGATCAAACTTC 59.597 44.000 1.04 0.00 0.00 3.01
884 896 5.290386 GCTGCTATAGGTACGATCAAACTT 58.710 41.667 1.04 0.00 0.00 2.66
885 897 4.556898 CGCTGCTATAGGTACGATCAAACT 60.557 45.833 1.04 0.00 0.00 2.66
886 898 3.669122 CGCTGCTATAGGTACGATCAAAC 59.331 47.826 1.04 0.00 0.00 2.93
887 899 3.855895 GCGCTGCTATAGGTACGATCAAA 60.856 47.826 0.00 0.00 0.00 2.69
888 900 2.351447 GCGCTGCTATAGGTACGATCAA 60.351 50.000 0.00 0.00 0.00 2.57
889 901 1.199327 GCGCTGCTATAGGTACGATCA 59.801 52.381 0.00 0.00 0.00 2.92
890 902 1.469308 AGCGCTGCTATAGGTACGATC 59.531 52.381 10.39 0.00 36.99 3.69
891 903 1.469308 GAGCGCTGCTATAGGTACGAT 59.531 52.381 18.48 0.00 39.88 3.73
892 904 0.873054 GAGCGCTGCTATAGGTACGA 59.127 55.000 18.48 0.00 39.88 3.43
893 905 0.875728 AGAGCGCTGCTATAGGTACG 59.124 55.000 18.48 0.00 39.88 3.67
894 906 3.310246 GAAAGAGCGCTGCTATAGGTAC 58.690 50.000 18.48 0.00 39.88 3.34
895 907 2.296471 GGAAAGAGCGCTGCTATAGGTA 59.704 50.000 18.48 0.00 39.88 3.08
896 908 1.069358 GGAAAGAGCGCTGCTATAGGT 59.931 52.381 18.48 0.00 39.88 3.08
897 909 1.789506 GGAAAGAGCGCTGCTATAGG 58.210 55.000 18.48 0.00 39.88 2.57
898 910 1.269309 ACGGAAAGAGCGCTGCTATAG 60.269 52.381 18.48 4.61 39.88 1.31
899 911 0.744874 ACGGAAAGAGCGCTGCTATA 59.255 50.000 18.48 0.00 39.88 1.31
900 912 0.744874 TACGGAAAGAGCGCTGCTAT 59.255 50.000 18.48 0.00 39.88 2.97
901 913 0.744874 ATACGGAAAGAGCGCTGCTA 59.255 50.000 18.48 0.00 39.88 3.49
902 914 0.744874 TATACGGAAAGAGCGCTGCT 59.255 50.000 18.48 9.38 43.88 4.24
903 915 0.853419 GTATACGGAAAGAGCGCTGC 59.147 55.000 18.48 6.71 0.00 5.25
904 916 1.488527 GGTATACGGAAAGAGCGCTG 58.511 55.000 18.48 0.22 0.00 5.18
905 917 0.030369 CGGTATACGGAAAGAGCGCT 59.970 55.000 11.27 11.27 39.42 5.92
906 918 2.503256 CGGTATACGGAAAGAGCGC 58.497 57.895 0.00 0.00 39.42 5.92
907 919 0.030369 AGCGGTATACGGAAAGAGCG 59.970 55.000 14.13 2.45 44.51 5.03
908 920 1.602416 GGAGCGGTATACGGAAAGAGC 60.602 57.143 14.13 3.10 44.51 4.09
909 921 1.000496 GGGAGCGGTATACGGAAAGAG 60.000 57.143 14.13 0.00 44.51 2.85
910 922 1.035139 GGGAGCGGTATACGGAAAGA 58.965 55.000 14.13 0.00 44.51 2.52
911 923 0.748450 TGGGAGCGGTATACGGAAAG 59.252 55.000 14.13 0.00 44.51 2.62
1101 1113 4.348495 AAAGGGGCGAGGAGGGGA 62.348 66.667 0.00 0.00 0.00 4.81
1197 1215 4.710167 GCCCCACCGCCGTAGTTT 62.710 66.667 0.00 0.00 0.00 2.66
1375 1393 3.199289 ACGAGAAACGAAATAAGGGGGAT 59.801 43.478 0.00 0.00 45.77 3.85
1421 1439 3.253921 TCGACACGAAGACAAGTCCAATA 59.746 43.478 0.00 0.00 31.06 1.90
1464 1482 5.760743 TGACCGATTCACACATTTCTAAACA 59.239 36.000 0.00 0.00 0.00 2.83
1466 1484 5.411361 CCTGACCGATTCACACATTTCTAAA 59.589 40.000 0.00 0.00 0.00 1.85
1604 1623 2.480419 GCACGCCATATATCAGAACCAC 59.520 50.000 0.00 0.00 0.00 4.16
1675 1695 7.770433 AGCAATTGCAACTACAGATTAGTATCA 59.230 33.333 30.89 0.00 45.16 2.15
1717 1737 5.111293 CCACTCACTTGAAAAAGCAACAAT 58.889 37.500 0.00 0.00 0.00 2.71
1747 1767 0.773644 ATGACAGCCACCCTCAAAGT 59.226 50.000 0.00 0.00 0.00 2.66
2026 2046 6.312399 TGAATACTTCAAATCACCACACAC 57.688 37.500 0.00 0.00 36.59 3.82
2088 2108 7.379529 GGATTATGGAAAATGCATGTCTTTACG 59.620 37.037 0.00 0.00 29.08 3.18
2156 2176 2.074547 TGGCACACGTCTAGTTTAGC 57.925 50.000 0.00 0.00 0.00 3.09
2237 2257 2.230992 ACAAAGCTGACAGCACAAAACA 59.769 40.909 28.43 0.00 45.56 2.83
2244 2264 1.105457 AAGCAACAAAGCTGACAGCA 58.895 45.000 28.43 0.00 45.89 4.41
2318 2338 8.301002 CCATTGCAATTCTCCAAAATCAAAATT 58.699 29.630 9.83 0.00 0.00 1.82
2320 2340 6.771749 ACCATTGCAATTCTCCAAAATCAAAA 59.228 30.769 9.83 0.00 0.00 2.44
2807 2988 4.997395 TCCTCAGTCATTACAGCTTGAAAC 59.003 41.667 0.00 0.00 0.00 2.78
3154 3335 3.001330 GCGGTTTCTATCATTCCTTGACG 59.999 47.826 0.00 0.00 37.11 4.35
3233 3414 0.818040 AGTTTCCTTGTGGTGGCGAC 60.818 55.000 0.00 0.00 34.23 5.19
3234 3415 0.106918 AAGTTTCCTTGTGGTGGCGA 60.107 50.000 0.00 0.00 34.23 5.54
3236 3417 0.673985 GGAAGTTTCCTTGTGGTGGC 59.326 55.000 3.63 0.00 44.11 5.01
3309 3520 1.214589 CATCTTGCCCAGCTTGTGC 59.785 57.895 0.00 0.00 40.05 4.57
3320 3531 3.391296 TCCCATAACCTCTACCATCTTGC 59.609 47.826 0.00 0.00 0.00 4.01
3361 3572 0.255890 AGGCGCATTGTAACCTGGAT 59.744 50.000 10.83 0.00 0.00 3.41
3596 3807 1.727062 CATAGGATCCAGGAGCAGGT 58.273 55.000 15.82 0.00 0.00 4.00
3737 3975 3.193479 CAGAAACCCCTTGCAAGTTATCC 59.807 47.826 24.35 9.31 0.00 2.59
3826 4064 5.875359 ACTTGTCTATAGTGCCAGTAAAAGC 59.125 40.000 0.00 0.00 0.00 3.51
3901 4139 9.932207 TCCGTAAAGAAATATAAGAGTGTTTGA 57.068 29.630 0.00 0.00 0.00 2.69
3907 4145 7.909485 TCCCTCCGTAAAGAAATATAAGAGT 57.091 36.000 0.00 0.00 0.00 3.24
3924 4162 6.712095 TCATCTTCAATCAAATATTCCCTCCG 59.288 38.462 0.00 0.00 0.00 4.63
4092 4331 4.440808 TCTATTTTGGAACAGGGGGAGTA 58.559 43.478 0.00 0.00 42.39 2.59
4093 4332 3.265489 TCTATTTTGGAACAGGGGGAGT 58.735 45.455 0.00 0.00 42.39 3.85
4094 4333 4.079787 TCATCTATTTTGGAACAGGGGGAG 60.080 45.833 0.00 0.00 42.39 4.30
4095 4334 3.855599 TCATCTATTTTGGAACAGGGGGA 59.144 43.478 0.00 0.00 42.39 4.81
4096 4335 3.954258 GTCATCTATTTTGGAACAGGGGG 59.046 47.826 0.00 0.00 42.39 5.40
4097 4336 4.860022 AGTCATCTATTTTGGAACAGGGG 58.140 43.478 0.00 0.00 42.39 4.79
4098 4337 5.500234 TGAGTCATCTATTTTGGAACAGGG 58.500 41.667 0.00 0.00 42.39 4.45
4099 4338 6.656693 AGTTGAGTCATCTATTTTGGAACAGG 59.343 38.462 1.70 0.00 42.39 4.00
4100 4339 7.678947 AGTTGAGTCATCTATTTTGGAACAG 57.321 36.000 1.70 0.00 42.39 3.16
4101 4340 8.352201 CAAAGTTGAGTCATCTATTTTGGAACA 58.648 33.333 4.14 0.00 35.65 3.18
4102 4341 8.352942 ACAAAGTTGAGTCATCTATTTTGGAAC 58.647 33.333 14.35 0.00 40.00 3.62
4103 4342 8.463930 ACAAAGTTGAGTCATCTATTTTGGAA 57.536 30.769 14.35 0.00 40.00 3.53
4104 4343 9.739276 ATACAAAGTTGAGTCATCTATTTTGGA 57.261 29.630 14.35 9.09 40.00 3.53
4135 4374 9.413048 CCAACTTTGAACAAACTTTGTACTAAA 57.587 29.630 7.59 8.49 44.59 1.85
4136 4375 8.030106 CCCAACTTTGAACAAACTTTGTACTAA 58.970 33.333 7.59 1.77 44.59 2.24
4137 4376 7.177041 ACCCAACTTTGAACAAACTTTGTACTA 59.823 33.333 7.59 0.00 44.59 1.82
4138 4377 6.014925 ACCCAACTTTGAACAAACTTTGTACT 60.015 34.615 7.59 0.00 44.59 2.73
4139 4378 6.160684 ACCCAACTTTGAACAAACTTTGTAC 58.839 36.000 7.59 0.00 44.59 2.90
4140 4379 6.015350 TGACCCAACTTTGAACAAACTTTGTA 60.015 34.615 7.59 0.00 44.59 2.41
4142 4381 5.233988 TGACCCAACTTTGAACAAACTTTG 58.766 37.500 0.00 0.00 0.00 2.77
4143 4382 5.476091 TGACCCAACTTTGAACAAACTTT 57.524 34.783 0.00 0.00 0.00 2.66
4144 4383 5.422012 AGATGACCCAACTTTGAACAAACTT 59.578 36.000 0.00 0.00 0.00 2.66
4145 4384 4.956075 AGATGACCCAACTTTGAACAAACT 59.044 37.500 0.00 0.00 0.00 2.66
4146 4385 5.262588 AGATGACCCAACTTTGAACAAAC 57.737 39.130 0.00 0.00 0.00 2.93
4147 4386 7.595819 AATAGATGACCCAACTTTGAACAAA 57.404 32.000 0.17 0.17 0.00 2.83
4148 4387 7.595819 AAATAGATGACCCAACTTTGAACAA 57.404 32.000 0.00 0.00 0.00 2.83
4149 4388 7.432869 CAAAATAGATGACCCAACTTTGAACA 58.567 34.615 0.00 0.00 0.00 3.18
4150 4389 6.868339 CCAAAATAGATGACCCAACTTTGAAC 59.132 38.462 0.00 0.00 0.00 3.18
4151 4390 6.780031 TCCAAAATAGATGACCCAACTTTGAA 59.220 34.615 0.00 0.00 0.00 2.69
4152 4391 6.310941 TCCAAAATAGATGACCCAACTTTGA 58.689 36.000 0.00 0.00 0.00 2.69
4153 4392 6.588719 TCCAAAATAGATGACCCAACTTTG 57.411 37.500 0.00 0.00 0.00 2.77
4154 4393 6.294508 CGTTCCAAAATAGATGACCCAACTTT 60.295 38.462 0.00 0.00 0.00 2.66
4155 4394 5.183140 CGTTCCAAAATAGATGACCCAACTT 59.817 40.000 0.00 0.00 0.00 2.66
4156 4395 4.700213 CGTTCCAAAATAGATGACCCAACT 59.300 41.667 0.00 0.00 0.00 3.16
4157 4396 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
4158 4397 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
4159 4398 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
4160 4399 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
4161 4400 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
4162 4401 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
4163 4402 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
4164 4403 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
4165 4404 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
4166 4405 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
4167 4406 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
4168 4407 4.355549 TCTACTCCCTCCGTTCCAAAATA 58.644 43.478 0.00 0.00 0.00 1.40
4169 4408 3.178865 TCTACTCCCTCCGTTCCAAAAT 58.821 45.455 0.00 0.00 0.00 1.82
4170 4409 2.612000 TCTACTCCCTCCGTTCCAAAA 58.388 47.619 0.00 0.00 0.00 2.44
4171 4410 2.314071 TCTACTCCCTCCGTTCCAAA 57.686 50.000 0.00 0.00 0.00 3.28
4172 4411 2.544844 ATCTACTCCCTCCGTTCCAA 57.455 50.000 0.00 0.00 0.00 3.53
4173 4412 2.500098 CAAATCTACTCCCTCCGTTCCA 59.500 50.000 0.00 0.00 0.00 3.53
4174 4413 2.500504 ACAAATCTACTCCCTCCGTTCC 59.499 50.000 0.00 0.00 0.00 3.62
4175 4414 3.889520 ACAAATCTACTCCCTCCGTTC 57.110 47.619 0.00 0.00 0.00 3.95
4176 4415 4.351127 ACTACAAATCTACTCCCTCCGTT 58.649 43.478 0.00 0.00 0.00 4.44
4177 4416 3.978610 ACTACAAATCTACTCCCTCCGT 58.021 45.455 0.00 0.00 0.00 4.69
4178 4417 5.105473 TGAAACTACAAATCTACTCCCTCCG 60.105 44.000 0.00 0.00 0.00 4.63
4179 4418 6.295719 TGAAACTACAAATCTACTCCCTCC 57.704 41.667 0.00 0.00 0.00 4.30
4180 4419 7.159372 TGTTGAAACTACAAATCTACTCCCTC 58.841 38.462 0.00 0.00 0.00 4.30
4181 4420 7.074653 TGTTGAAACTACAAATCTACTCCCT 57.925 36.000 0.00 0.00 0.00 4.20
4182 4421 7.390718 ACATGTTGAAACTACAAATCTACTCCC 59.609 37.037 0.00 0.00 0.00 4.30
4183 4422 8.324163 ACATGTTGAAACTACAAATCTACTCC 57.676 34.615 0.00 0.00 0.00 3.85
4184 4423 9.209175 AGACATGTTGAAACTACAAATCTACTC 57.791 33.333 0.00 0.00 0.00 2.59
4185 4424 9.209175 GAGACATGTTGAAACTACAAATCTACT 57.791 33.333 0.00 0.00 29.20 2.57
4186 4425 8.162880 CGAGACATGTTGAAACTACAAATCTAC 58.837 37.037 0.00 0.00 29.20 2.59
4577 4881 2.030371 TGAATGCAGGCAACAAGACAA 58.970 42.857 0.00 0.00 41.41 3.18
4720 5027 8.408043 AGTTGGAAGAATACATCACAAATTCA 57.592 30.769 0.00 0.00 33.06 2.57
4747 5054 8.239998 AGATGCAACAATTCTACTTCTTTTAGC 58.760 33.333 0.00 0.00 0.00 3.09
4749 5056 9.283768 TCAGATGCAACAATTCTACTTCTTTTA 57.716 29.630 0.00 0.00 0.00 1.52
4751 5058 7.750229 TCAGATGCAACAATTCTACTTCTTT 57.250 32.000 0.00 0.00 0.00 2.52
4753 5060 6.318144 CCATCAGATGCAACAATTCTACTTCT 59.682 38.462 4.68 0.00 0.00 2.85
4754 5061 6.493116 CCATCAGATGCAACAATTCTACTTC 58.507 40.000 4.68 0.00 0.00 3.01
4839 5160 0.824759 ACGGTTAGATCACCTCAGCC 59.175 55.000 0.00 0.00 34.22 4.85
4844 5166 3.329929 GGTGAAACGGTTAGATCACCT 57.670 47.619 25.42 0.00 46.63 4.00
4853 5175 1.099689 CCAACACAGGTGAAACGGTT 58.900 50.000 6.40 0.00 38.12 4.44
4857 5179 2.478879 CGTTTCCCAACACAGGTGAAAC 60.479 50.000 6.40 5.23 40.96 2.78
4909 5231 4.331168 CCAAGAGTAACAATCACAGCTAGC 59.669 45.833 6.62 6.62 0.00 3.42
4977 5307 6.037172 GCTAAGATCGACCAAAGCATCTAAAA 59.963 38.462 6.75 0.00 0.00 1.52
5152 5483 2.611518 GATGCGTCCATAGGTATGCTC 58.388 52.381 0.00 0.00 32.40 4.26
5171 5502 4.784300 TCATATGGATAGGATGTGCATGGA 59.216 41.667 2.13 0.00 0.00 3.41
5202 5533 7.708322 TCAATCTCAATCTTTATCCGTCTCTTG 59.292 37.037 0.00 0.00 0.00 3.02
5247 5614 5.759506 ATGACGTTCTCATCGACTCTAAT 57.240 39.130 0.00 0.00 34.07 1.73
5251 5618 5.118664 TGAAAAATGACGTTCTCATCGACTC 59.881 40.000 0.00 0.00 38.82 3.36
5266 5633 5.341993 GCAATGTTCGTTCGATGAAAAATGA 59.658 36.000 9.27 0.00 0.00 2.57
5273 5640 2.093306 AGGCAATGTTCGTTCGATGA 57.907 45.000 0.00 0.00 0.00 2.92
5306 5681 8.397148 CCTTCATGTTTAGTTGTTTGCATTTTT 58.603 29.630 0.00 0.00 0.00 1.94
5322 5697 5.183140 CCGATGGTTAAGTTCCTTCATGTTT 59.817 40.000 0.00 0.00 31.93 2.83
5323 5698 4.700213 CCGATGGTTAAGTTCCTTCATGTT 59.300 41.667 0.00 0.00 31.93 2.71
5325 5700 4.513442 TCCGATGGTTAAGTTCCTTCATG 58.487 43.478 0.00 0.00 31.93 3.07
5326 5701 4.837093 TCCGATGGTTAAGTTCCTTCAT 57.163 40.909 0.00 0.00 31.93 2.57
5327 5702 4.041198 AGTTCCGATGGTTAAGTTCCTTCA 59.959 41.667 0.00 0.00 31.93 3.02
5328 5703 4.576879 AGTTCCGATGGTTAAGTTCCTTC 58.423 43.478 0.00 0.00 0.00 3.46
5329 5704 4.565028 GGAGTTCCGATGGTTAAGTTCCTT 60.565 45.833 0.00 0.00 0.00 3.36
5346 5740 2.158667 TGTTGTTGAGGGGAAGGAGTTC 60.159 50.000 0.00 0.00 0.00 3.01
5374 5769 1.203428 TGGAGGGGATGAGGTCTTCAA 60.203 52.381 0.00 0.00 39.77 2.69
5397 5792 3.753434 ACGAGCTGGCTGACGGAG 61.753 66.667 0.00 0.00 0.00 4.63
5404 5799 2.816958 CGAATGCACGAGCTGGCT 60.817 61.111 6.36 0.00 42.74 4.75
5439 5834 1.747745 CCGTGGAACCGGGATTTCC 60.748 63.158 14.04 14.04 44.32 3.13
5440 5835 3.899395 CCGTGGAACCGGGATTTC 58.101 61.111 6.32 0.00 44.32 2.17
5448 5843 2.248086 ATACCCGAAGCCGTGGAACC 62.248 60.000 0.00 0.00 32.72 3.62
5449 5844 0.392060 AATACCCGAAGCCGTGGAAC 60.392 55.000 0.00 0.00 32.72 3.62
5450 5845 1.137479 CTAATACCCGAAGCCGTGGAA 59.863 52.381 0.00 0.00 32.72 3.53
5451 5846 0.748450 CTAATACCCGAAGCCGTGGA 59.252 55.000 0.00 0.00 32.72 4.02
5452 5847 0.748450 TCTAATACCCGAAGCCGTGG 59.252 55.000 0.00 0.00 33.98 4.94
5453 5848 2.814280 ATCTAATACCCGAAGCCGTG 57.186 50.000 0.00 0.00 0.00 4.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.