Multiple sequence alignment - TraesCS4D01G103700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G103700 chr4D 100.000 4663 0 0 925 5587 82445067 82449729 0.000000e+00 8612.0
1 TraesCS4D01G103700 chr4D 100.000 348 0 0 1 348 82444143 82444490 1.310000e-180 643.0
2 TraesCS4D01G103700 chr4D 94.268 157 8 1 2168 2323 82446232 82446388 7.230000e-59 239.0
3 TraesCS4D01G103700 chr4D 94.268 157 8 1 2090 2246 82446310 82446465 7.230000e-59 239.0
4 TraesCS4D01G103700 chr4D 92.157 102 8 0 5402 5503 82449442 82449543 1.620000e-30 145.0
5 TraesCS4D01G103700 chr4D 92.157 102 8 0 5300 5401 82449544 82449645 1.620000e-30 145.0
6 TraesCS4D01G103700 chr4D 88.636 88 9 1 2237 2323 82446223 82446310 7.650000e-19 106.0
7 TraesCS4D01G103700 chr4D 88.636 88 9 1 2081 2168 82446379 82446465 7.650000e-19 106.0
8 TraesCS4D01G103700 chr4A 94.796 3190 83 48 2168 5345 492889325 492892443 0.000000e+00 4894.0
9 TraesCS4D01G103700 chr4A 97.958 1322 27 0 925 2246 492888160 492889481 0.000000e+00 2292.0
10 TraesCS4D01G103700 chr4A 88.742 151 13 4 14 162 492887941 492888089 1.240000e-41 182.0
11 TraesCS4D01G103700 chr4A 90.741 108 9 1 5477 5583 12676162 12676269 5.830000e-30 143.0
12 TraesCS4D01G103700 chr4A 92.405 79 6 0 2090 2168 492889403 492889481 4.570000e-21 113.0
13 TraesCS4D01G103700 chr4A 100.000 30 0 0 5449 5478 492892462 492892491 7.820000e-04 56.5
14 TraesCS4D01G103700 chr4B 96.782 2828 56 20 2168 4983 116333990 116336794 0.000000e+00 4686.0
15 TraesCS4D01G103700 chr4B 97.579 1322 31 1 925 2246 116332825 116334145 0.000000e+00 2263.0
16 TraesCS4D01G103700 chr4B 85.196 358 25 10 5027 5376 116336882 116337219 5.360000e-90 342.0
17 TraesCS4D01G103700 chr4B 94.737 95 5 0 14 108 116332555 116332649 1.250000e-31 148.0
18 TraesCS4D01G103700 chr4B 86.047 86 11 1 2237 2321 116333981 116334066 2.140000e-14 91.6
19 TraesCS4D01G103700 chr4B 92.157 51 4 0 1262 1312 116333204 116333254 7.760000e-09 73.1
20 TraesCS4D01G103700 chr5A 85.793 542 58 7 1307 1832 177624908 177624370 1.760000e-154 556.0
21 TraesCS4D01G103700 chr5A 90.596 319 24 4 2246 2562 177622979 177622665 8.660000e-113 418.0
22 TraesCS4D01G103700 chr5A 88.988 336 29 3 1841 2168 177623235 177622900 5.210000e-110 409.0
23 TraesCS4D01G103700 chr5A 95.580 181 8 0 4179 4359 177596716 177596536 1.970000e-74 291.0
24 TraesCS4D01G103700 chr5A 95.808 167 7 0 3867 4033 177597211 177597045 2.570000e-68 270.0
25 TraesCS4D01G103700 chr5A 97.710 131 3 0 2674 2804 177620659 177620529 5.630000e-55 226.0
26 TraesCS4D01G103700 chr5A 93.243 148 10 0 4033 4180 177596942 177596795 9.420000e-53 219.0
27 TraesCS4D01G103700 chr5A 92.361 144 11 0 3725 3868 177597494 177597351 7.340000e-49 206.0
28 TraesCS4D01G103700 chr5A 84.112 214 27 6 4483 4696 177596138 177595932 3.410000e-47 200.0
29 TraesCS4D01G103700 chr5A 93.939 132 7 1 2796 2926 177619802 177619671 1.230000e-46 198.0
30 TraesCS4D01G103700 chr5A 95.652 115 5 0 2561 2675 177621072 177620958 9.560000e-43 185.0
31 TraesCS4D01G103700 chr5A 98.684 76 1 0 3305 3380 177604535 177604460 9.760000e-28 135.0
32 TraesCS4D01G103700 chr5A 93.333 90 6 0 3375 3464 177604370 177604281 3.510000e-27 134.0
33 TraesCS4D01G103700 chr5A 87.387 111 12 2 5476 5584 265274061 265274171 5.880000e-25 126.0
34 TraesCS4D01G103700 chr5A 92.593 81 6 0 3001 3081 177606068 177605988 3.540000e-22 117.0
35 TraesCS4D01G103700 chr5A 95.652 69 3 0 3581 3649 177603328 177603260 1.650000e-20 111.0
36 TraesCS4D01G103700 chr5A 90.000 80 7 1 2168 2246 177622979 177622900 9.900000e-18 102.0
37 TraesCS4D01G103700 chr5A 96.364 55 2 0 3173 3227 177605547 177605493 2.140000e-14 91.6
38 TraesCS4D01G103700 chr5A 100.000 29 0 0 5372 5400 116807780 116807808 3.000000e-03 54.7
39 TraesCS4D01G103700 chr5A 100.000 28 0 0 5374 5401 616389695 616389722 1.000000e-02 52.8
40 TraesCS4D01G103700 chr5B 85.348 546 60 8 1304 1832 166835794 166835252 1.060000e-151 547.0
41 TraesCS4D01G103700 chr5B 91.185 329 28 1 1841 2168 166834381 166834053 3.970000e-121 446.0
42 TraesCS4D01G103700 chr5B 91.850 319 23 3 2246 2562 166834132 166833815 5.140000e-120 442.0
43 TraesCS4D01G103700 chr5B 88.980 245 18 1 1068 1312 166835978 166835743 1.520000e-75 294.0
44 TraesCS4D01G103700 chr5B 95.580 181 8 0 4179 4359 166812696 166812516 1.970000e-74 291.0
45 TraesCS4D01G103700 chr5B 95.808 167 7 0 3867 4033 166813196 166813030 2.570000e-68 270.0
46 TraesCS4D01G103700 chr5B 96.947 131 4 0 2674 2804 166831837 166831707 2.620000e-53 220.0
47 TraesCS4D01G103700 chr5B 92.568 148 11 0 4033 4180 166812927 166812780 4.380000e-51 213.0
48 TraesCS4D01G103700 chr5B 87.500 184 22 1 4483 4666 166812114 166811932 1.580000e-50 211.0
49 TraesCS4D01G103700 chr5B 90.972 144 13 0 3725 3868 166813485 166813342 1.590000e-45 195.0
50 TraesCS4D01G103700 chr5B 94.444 126 6 1 3458 3583 166818298 166818174 5.710000e-45 193.0
51 TraesCS4D01G103700 chr5B 93.182 132 8 1 2796 2926 166830862 166830731 5.710000e-45 193.0
52 TraesCS4D01G103700 chr5B 93.913 115 7 0 2561 2675 166832250 166832136 2.070000e-39 174.0
53 TraesCS4D01G103700 chr5B 93.333 90 6 0 3375 3464 166818936 166818847 3.510000e-27 134.0
54 TraesCS4D01G103700 chr5B 97.368 76 2 0 3305 3380 166819101 166819026 4.540000e-26 130.0
55 TraesCS4D01G103700 chr5B 91.250 80 6 1 2168 2246 166834132 166834053 2.130000e-19 108.0
56 TraesCS4D01G103700 chr5B 96.364 55 2 0 3173 3227 166819904 166819850 2.140000e-14 91.6
57 TraesCS4D01G103700 chr5D 85.165 546 61 8 1304 1832 169938866 169939408 4.920000e-150 542.0
58 TraesCS4D01G103700 chr5D 91.743 327 24 3 2238 2562 169940512 169940837 8.540000e-123 451.0
59 TraesCS4D01G103700 chr5D 90.578 329 30 1 1841 2168 169940271 169940599 8.600000e-118 435.0
60 TraesCS4D01G103700 chr5D 87.048 332 27 5 987 1312 169938596 169938917 1.480000e-95 361.0
61 TraesCS4D01G103700 chr5D 95.580 181 8 0 4179 4359 169971940 169972120 1.970000e-74 291.0
62 TraesCS4D01G103700 chr5D 95.808 167 7 0 3867 4033 169971441 169971607 2.570000e-68 270.0
63 TraesCS4D01G103700 chr5D 97.710 131 3 0 2674 2804 169947242 169947372 5.630000e-55 226.0
64 TraesCS4D01G103700 chr5D 93.919 148 9 0 4033 4180 169971710 169971857 2.030000e-54 224.0
65 TraesCS4D01G103700 chr5D 87.701 187 22 1 4480 4666 169972604 169972789 3.390000e-52 217.0
66 TraesCS4D01G103700 chr5D 93.056 144 10 0 3725 3868 169971154 169971297 1.580000e-50 211.0
67 TraesCS4D01G103700 chr5D 93.182 132 8 1 2796 2926 169948094 169948225 5.710000e-45 193.0
68 TraesCS4D01G103700 chr5D 95.652 115 5 0 2561 2675 169946830 169946944 9.560000e-43 185.0
69 TraesCS4D01G103700 chr5D 98.684 76 1 0 3305 3380 169964725 169964800 9.760000e-28 135.0
70 TraesCS4D01G103700 chr5D 93.333 90 6 0 3375 3464 169964890 169964979 3.510000e-27 134.0
71 TraesCS4D01G103700 chr5D 95.062 81 4 0 3001 3081 169963386 169963466 1.630000e-25 128.0
72 TraesCS4D01G103700 chr5D 95.714 70 3 0 3581 3650 169965989 169966058 4.570000e-21 113.0
73 TraesCS4D01G103700 chr5D 89.655 87 8 1 2161 2246 169940513 169940599 5.920000e-20 110.0
74 TraesCS4D01G103700 chr5D 94.828 58 3 0 3170 3227 169963904 169963961 2.140000e-14 91.6
75 TraesCS4D01G103700 chr7D 87.500 112 11 2 5476 5584 334407772 334407883 5.880000e-25 126.0
76 TraesCS4D01G103700 chr7D 92.500 40 1 2 5374 5411 1768058 1768019 7.820000e-04 56.5
77 TraesCS4D01G103700 chr2D 85.484 124 14 4 5466 5587 101365580 101365701 5.880000e-25 126.0
78 TraesCS4D01G103700 chr2D 100.000 28 0 0 5403 5430 59478339 59478366 1.000000e-02 52.8
79 TraesCS4D01G103700 chr7A 86.726 113 14 1 5476 5587 17694180 17694068 2.110000e-24 124.0
80 TraesCS4D01G103700 chr1D 85.246 122 16 2 5468 5587 25734174 25734053 2.110000e-24 124.0
81 TraesCS4D01G103700 chr2B 88.350 103 11 1 5477 5578 109070911 109070809 7.600000e-24 122.0
82 TraesCS4D01G103700 chr7B 87.619 105 12 1 5475 5578 333410383 333410487 2.730000e-23 121.0
83 TraesCS4D01G103700 chr2A 86.364 110 14 1 5476 5584 442556486 442556377 9.830000e-23 119.0
84 TraesCS4D01G103700 chr3A 91.228 57 5 0 157 213 394120431 394120487 1.670000e-10 78.7
85 TraesCS4D01G103700 chr3A 100.000 29 0 0 5372 5400 718847418 718847446 3.000000e-03 54.7
86 TraesCS4D01G103700 chr6D 100.000 29 0 0 5372 5400 20088849 20088821 3.000000e-03 54.7
87 TraesCS4D01G103700 chrUn 100.000 28 0 0 5373 5400 229550428 229550401 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G103700 chr4D 82444143 82449729 5586 False 1279.375000 8612 93.765250 1 5587 8 chr4D.!!$F1 5586
1 TraesCS4D01G103700 chr4A 492887941 492892491 4550 False 1507.500000 4894 94.780200 14 5478 5 chr4A.!!$F2 5464
2 TraesCS4D01G103700 chr4B 116332555 116337219 4664 False 1267.283333 4686 92.083000 14 5376 6 chr4B.!!$F1 5362
3 TraesCS4D01G103700 chr5A 177619671 177624908 5237 True 299.142857 556 91.811143 1307 2926 7 chr5A.!!$R3 1619
4 TraesCS4D01G103700 chr5A 177595932 177597494 1562 True 237.200000 291 92.220800 3725 4696 5 chr5A.!!$R1 971
5 TraesCS4D01G103700 chr5B 166830731 166835978 5247 True 303.000000 547 91.581875 1068 2926 8 chr5B.!!$R3 1858
6 TraesCS4D01G103700 chr5B 166811932 166813485 1553 True 236.000000 291 92.485600 3725 4666 5 chr5B.!!$R1 941
7 TraesCS4D01G103700 chr5D 169938596 169940837 2241 False 379.800000 542 88.837800 987 2562 5 chr5D.!!$F1 1575
8 TraesCS4D01G103700 chr5D 169971154 169972789 1635 False 242.600000 291 93.212800 3725 4666 5 chr5D.!!$F4 941
9 TraesCS4D01G103700 chr5D 169946830 169948225 1395 False 201.333333 226 95.514667 2561 2926 3 chr5D.!!$F2 365

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
123 155 0.173708 GGGAAGCTAGAGTCCGTGTG 59.826 60.000 0.00 0.00 34.47 3.82 F
129 161 1.136305 GCTAGAGTCCGTGTGCCATTA 59.864 52.381 0.00 0.00 0.00 1.90 F
233 286 1.484240 CCTGAGAAGATGGGAGTGACC 59.516 57.143 0.00 0.00 38.08 4.02 F
343 396 1.795768 ACTATAATCATGCCGTGCCG 58.204 50.000 0.00 0.00 0.00 5.69 F
2231 3444 1.028330 TGCTGCTGATTGTAGGCTGC 61.028 55.000 0.00 0.00 46.12 5.25 F
2232 3445 1.028330 GCTGCTGATTGTAGGCTGCA 61.028 55.000 0.00 0.00 45.56 4.41 F
2235 3448 1.065272 TGCTGATTGTAGGCTGCATCA 60.065 47.619 6.01 11.02 34.68 3.07 F
3452 7424 1.418637 TCAGTTGTTCCCAGTACCACC 59.581 52.381 0.00 0.00 0.00 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1671 1745 4.740822 CCAAACTGGGGAGGCCCG 62.741 72.222 0.0 0.00 46.66 6.13 R
2136 3349 3.011818 TGATGCAGCCTACAATCAACAG 58.988 45.455 0.0 0.00 0.00 3.16 R
2139 3352 3.441222 CACTTGATGCAGCCTACAATCAA 59.559 43.478 0.0 5.29 0.00 2.57 R
2289 3502 1.028330 GCAGCCTACAATCAGCAGCA 61.028 55.000 0.0 0.00 38.71 4.41 R
3452 7424 0.611714 AGTAGTAAACCCTGCCACCG 59.388 55.000 0.0 0.00 0.00 4.94 R
4079 8301 2.376695 TAGAGACCCAATAGGACCGG 57.623 55.000 0.0 0.00 39.89 5.28 R
4253 8560 1.134946 CCATCCTCGCCATTTTCCAAC 59.865 52.381 0.0 0.00 0.00 3.77 R
4930 9603 0.038166 TTCCAGCCACTCCCATGTTC 59.962 55.000 0.0 0.00 0.00 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 2.034532 TGTACCGCGACCTCAGGA 59.965 61.111 8.23 0.00 0.00 3.86
50 51 2.636412 CGCGACCTCAGGACCAAGA 61.636 63.158 0.00 0.00 0.00 3.02
111 143 0.393537 CTTTGCTCCGATGGGAAGCT 60.394 55.000 15.44 0.00 43.27 3.74
112 144 0.908910 TTTGCTCCGATGGGAAGCTA 59.091 50.000 15.44 8.30 43.27 3.32
113 145 0.465705 TTGCTCCGATGGGAAGCTAG 59.534 55.000 15.44 0.00 43.27 3.42
114 146 0.397114 TGCTCCGATGGGAAGCTAGA 60.397 55.000 15.44 0.00 43.27 2.43
115 147 0.316841 GCTCCGATGGGAAGCTAGAG 59.683 60.000 0.00 0.00 43.27 2.43
116 148 1.698506 CTCCGATGGGAAGCTAGAGT 58.301 55.000 0.00 0.00 43.27 3.24
117 149 1.611491 CTCCGATGGGAAGCTAGAGTC 59.389 57.143 0.00 0.00 43.27 3.36
119 151 0.312416 CGATGGGAAGCTAGAGTCCG 59.688 60.000 0.00 0.00 34.47 4.79
120 152 1.404843 GATGGGAAGCTAGAGTCCGT 58.595 55.000 0.00 0.00 34.47 4.69
121 153 1.067821 GATGGGAAGCTAGAGTCCGTG 59.932 57.143 0.00 0.00 34.47 4.94
122 154 0.251653 TGGGAAGCTAGAGTCCGTGT 60.252 55.000 0.00 0.00 34.47 4.49
123 155 0.173708 GGGAAGCTAGAGTCCGTGTG 59.826 60.000 0.00 0.00 34.47 3.82
126 158 1.185618 AAGCTAGAGTCCGTGTGCCA 61.186 55.000 0.00 0.00 0.00 4.92
129 161 1.136305 GCTAGAGTCCGTGTGCCATTA 59.864 52.381 0.00 0.00 0.00 1.90
130 162 2.418197 GCTAGAGTCCGTGTGCCATTAA 60.418 50.000 0.00 0.00 0.00 1.40
165 218 2.581246 GGACCCCTCCCTTATTTTGAGT 59.419 50.000 0.00 0.00 0.00 3.41
166 219 3.784202 GGACCCCTCCCTTATTTTGAGTA 59.216 47.826 0.00 0.00 0.00 2.59
167 220 4.228895 GGACCCCTCCCTTATTTTGAGTAA 59.771 45.833 0.00 0.00 0.00 2.24
168 221 5.281349 GGACCCCTCCCTTATTTTGAGTAAA 60.281 44.000 0.00 0.00 0.00 2.01
170 223 5.075344 ACCCCTCCCTTATTTTGAGTAAACA 59.925 40.000 0.00 0.00 0.00 2.83
171 224 6.014012 CCCCTCCCTTATTTTGAGTAAACAA 58.986 40.000 0.00 0.00 0.00 2.83
172 225 6.495526 CCCCTCCCTTATTTTGAGTAAACAAA 59.504 38.462 0.00 0.00 37.87 2.83
174 227 8.251026 CCCTCCCTTATTTTGAGTAAACAAATC 58.749 37.037 0.00 0.00 39.09 2.17
175 228 9.025041 CCTCCCTTATTTTGAGTAAACAAATCT 57.975 33.333 0.00 0.00 39.09 2.40
178 231 9.769093 CCCTTATTTTGAGTAAACAAATCTACG 57.231 33.333 0.00 0.00 39.09 3.51
186 239 8.306680 TGAGTAAACAAATCTACGAGAAAAGG 57.693 34.615 0.00 0.00 0.00 3.11
187 240 7.386848 TGAGTAAACAAATCTACGAGAAAAGGG 59.613 37.037 0.00 0.00 0.00 3.95
188 241 7.447594 AGTAAACAAATCTACGAGAAAAGGGA 58.552 34.615 0.00 0.00 0.00 4.20
189 242 7.935210 AGTAAACAAATCTACGAGAAAAGGGAA 59.065 33.333 0.00 0.00 0.00 3.97
190 243 7.576861 AAACAAATCTACGAGAAAAGGGAAA 57.423 32.000 0.00 0.00 0.00 3.13
191 244 7.576861 AACAAATCTACGAGAAAAGGGAAAA 57.423 32.000 0.00 0.00 0.00 2.29
192 245 6.967135 ACAAATCTACGAGAAAAGGGAAAAC 58.033 36.000 0.00 0.00 0.00 2.43
193 246 6.771267 ACAAATCTACGAGAAAAGGGAAAACT 59.229 34.615 0.00 0.00 0.00 2.66
194 247 7.284716 ACAAATCTACGAGAAAAGGGAAAACTT 59.715 33.333 0.00 0.00 0.00 2.66
195 248 7.818997 AATCTACGAGAAAAGGGAAAACTTT 57.181 32.000 0.00 0.00 42.17 2.66
206 259 6.624352 AAGGGAAAACTTTTAGGTTACGAC 57.376 37.500 0.00 0.00 0.00 4.34
207 260 5.683681 AGGGAAAACTTTTAGGTTACGACA 58.316 37.500 0.00 0.00 0.00 4.35
208 261 6.121590 AGGGAAAACTTTTAGGTTACGACAA 58.878 36.000 0.00 0.00 0.00 3.18
209 262 6.261603 AGGGAAAACTTTTAGGTTACGACAAG 59.738 38.462 0.00 0.00 0.00 3.16
210 263 6.038603 GGGAAAACTTTTAGGTTACGACAAGT 59.961 38.462 0.00 0.00 0.00 3.16
212 265 6.990341 AAACTTTTAGGTTACGACAAGTGT 57.010 33.333 0.00 0.00 0.00 3.55
213 266 6.594284 AACTTTTAGGTTACGACAAGTGTC 57.406 37.500 1.12 1.12 41.47 3.67
214 267 5.052481 ACTTTTAGGTTACGACAAGTGTCC 58.948 41.667 5.88 0.00 41.86 4.02
215 268 4.942761 TTTAGGTTACGACAAGTGTCCT 57.057 40.909 5.88 0.43 41.86 3.85
216 269 2.814280 AGGTTACGACAAGTGTCCTG 57.186 50.000 5.88 0.00 41.86 3.86
217 270 2.313317 AGGTTACGACAAGTGTCCTGA 58.687 47.619 5.88 0.00 41.86 3.86
219 272 2.295349 GGTTACGACAAGTGTCCTGAGA 59.705 50.000 5.88 0.00 41.86 3.27
220 273 3.243636 GGTTACGACAAGTGTCCTGAGAA 60.244 47.826 5.88 0.00 41.86 2.87
222 275 2.307768 ACGACAAGTGTCCTGAGAAGA 58.692 47.619 5.88 0.00 41.86 2.87
223 276 2.894126 ACGACAAGTGTCCTGAGAAGAT 59.106 45.455 5.88 0.00 41.86 2.40
224 277 3.249091 CGACAAGTGTCCTGAGAAGATG 58.751 50.000 5.88 0.00 41.86 2.90
225 278 3.594134 GACAAGTGTCCTGAGAAGATGG 58.406 50.000 0.00 0.00 39.07 3.51
226 279 2.304180 ACAAGTGTCCTGAGAAGATGGG 59.696 50.000 0.00 0.00 0.00 4.00
228 281 2.465813 AGTGTCCTGAGAAGATGGGAG 58.534 52.381 0.00 0.00 0.00 4.30
229 282 2.183679 GTGTCCTGAGAAGATGGGAGT 58.816 52.381 0.00 0.00 0.00 3.85
230 283 2.093764 GTGTCCTGAGAAGATGGGAGTG 60.094 54.545 0.00 0.00 0.00 3.51
231 284 2.225369 TGTCCTGAGAAGATGGGAGTGA 60.225 50.000 0.00 0.00 0.00 3.41
232 285 2.167487 GTCCTGAGAAGATGGGAGTGAC 59.833 54.545 0.00 0.00 0.00 3.67
233 286 1.484240 CCTGAGAAGATGGGAGTGACC 59.516 57.143 0.00 0.00 38.08 4.02
234 287 2.465813 CTGAGAAGATGGGAGTGACCT 58.534 52.381 0.00 0.00 38.98 3.85
235 288 2.836981 CTGAGAAGATGGGAGTGACCTT 59.163 50.000 0.00 0.00 38.98 3.50
236 289 3.251484 TGAGAAGATGGGAGTGACCTTT 58.749 45.455 0.00 0.00 38.98 3.11
237 290 3.008375 TGAGAAGATGGGAGTGACCTTTG 59.992 47.826 0.00 0.00 38.98 2.77
238 291 3.251484 AGAAGATGGGAGTGACCTTTGA 58.749 45.455 0.00 0.00 38.98 2.69
239 292 3.652869 AGAAGATGGGAGTGACCTTTGAA 59.347 43.478 0.00 0.00 38.98 2.69
240 293 4.104738 AGAAGATGGGAGTGACCTTTGAAA 59.895 41.667 0.00 0.00 38.98 2.69
241 294 4.664688 AGATGGGAGTGACCTTTGAAAT 57.335 40.909 0.00 0.00 38.98 2.17
242 295 4.338879 AGATGGGAGTGACCTTTGAAATG 58.661 43.478 0.00 0.00 38.98 2.32
243 296 3.874383 TGGGAGTGACCTTTGAAATGA 57.126 42.857 0.00 0.00 38.98 2.57
244 297 3.754965 TGGGAGTGACCTTTGAAATGAG 58.245 45.455 0.00 0.00 38.98 2.90
245 298 3.138283 TGGGAGTGACCTTTGAAATGAGT 59.862 43.478 0.00 0.00 38.98 3.41
246 299 4.349636 TGGGAGTGACCTTTGAAATGAGTA 59.650 41.667 0.00 0.00 38.98 2.59
247 300 4.695928 GGGAGTGACCTTTGAAATGAGTAC 59.304 45.833 0.00 0.00 38.98 2.73
248 301 4.695928 GGAGTGACCTTTGAAATGAGTACC 59.304 45.833 0.00 0.00 35.41 3.34
249 302 4.315803 AGTGACCTTTGAAATGAGTACCG 58.684 43.478 0.00 0.00 0.00 4.02
250 303 3.435671 GTGACCTTTGAAATGAGTACCGG 59.564 47.826 0.00 0.00 0.00 5.28
251 304 3.071892 TGACCTTTGAAATGAGTACCGGT 59.928 43.478 13.98 13.98 0.00 5.28
252 305 3.671716 ACCTTTGAAATGAGTACCGGTC 58.328 45.455 12.40 2.55 0.00 4.79
253 306 3.326880 ACCTTTGAAATGAGTACCGGTCT 59.673 43.478 12.40 8.55 0.00 3.85
254 307 4.202430 ACCTTTGAAATGAGTACCGGTCTT 60.202 41.667 12.40 0.00 0.00 3.01
255 308 4.760204 CCTTTGAAATGAGTACCGGTCTTT 59.240 41.667 12.40 4.46 0.00 2.52
256 309 5.240844 CCTTTGAAATGAGTACCGGTCTTTT 59.759 40.000 12.40 7.91 0.00 2.27
257 310 6.428771 CCTTTGAAATGAGTACCGGTCTTTTA 59.571 38.462 12.40 0.00 0.00 1.52
258 311 7.120726 CCTTTGAAATGAGTACCGGTCTTTTAT 59.879 37.037 12.40 0.00 0.00 1.40
259 312 9.158233 CTTTGAAATGAGTACCGGTCTTTTATA 57.842 33.333 12.40 0.00 0.00 0.98
260 313 8.712285 TTGAAATGAGTACCGGTCTTTTATAG 57.288 34.615 12.40 0.00 0.00 1.31
261 314 6.759827 TGAAATGAGTACCGGTCTTTTATAGC 59.240 38.462 12.40 0.00 0.00 2.97
262 315 4.660789 TGAGTACCGGTCTTTTATAGCC 57.339 45.455 12.40 0.00 0.00 3.93
263 316 3.385755 TGAGTACCGGTCTTTTATAGCCC 59.614 47.826 12.40 0.00 0.00 5.19
264 317 3.377573 AGTACCGGTCTTTTATAGCCCA 58.622 45.455 12.40 0.00 0.00 5.36
265 318 3.971971 AGTACCGGTCTTTTATAGCCCAT 59.028 43.478 12.40 0.00 0.00 4.00
266 319 3.945640 ACCGGTCTTTTATAGCCCATT 57.054 42.857 0.00 0.00 0.00 3.16
267 320 4.245251 ACCGGTCTTTTATAGCCCATTT 57.755 40.909 0.00 0.00 0.00 2.32
268 321 4.606210 ACCGGTCTTTTATAGCCCATTTT 58.394 39.130 0.00 0.00 0.00 1.82
269 322 5.020795 ACCGGTCTTTTATAGCCCATTTTT 58.979 37.500 0.00 0.00 0.00 1.94
310 363 8.655935 AGCCCATAAATAGGAATTAATTCTGG 57.344 34.615 23.85 20.27 37.00 3.86
311 364 8.456124 AGCCCATAAATAGGAATTAATTCTGGA 58.544 33.333 23.85 12.22 37.00 3.86
312 365 9.259832 GCCCATAAATAGGAATTAATTCTGGAT 57.740 33.333 23.85 13.64 37.00 3.41
340 393 9.781834 TTTTAGAAAAACTATAATCATGCCGTG 57.218 29.630 0.00 0.00 0.00 4.94
341 394 5.821204 AGAAAAACTATAATCATGCCGTGC 58.179 37.500 0.00 0.00 0.00 5.34
342 395 4.568152 AAAACTATAATCATGCCGTGCC 57.432 40.909 0.00 0.00 0.00 5.01
343 396 1.795768 ACTATAATCATGCCGTGCCG 58.204 50.000 0.00 0.00 0.00 5.69
1553 1627 3.388308 CTCAATCAGCTCCGTATTCAGG 58.612 50.000 0.00 0.00 0.00 3.86
1671 1745 1.825622 GCAGCAGGGTCCTTATGGC 60.826 63.158 0.00 0.00 0.00 4.40
2136 3349 5.174761 TGTTAATTTCGTCAAACAGCATTGC 59.825 36.000 0.00 0.00 0.00 3.56
2227 3440 2.486951 GCATTGCTGCTGATTGTAGG 57.513 50.000 0.16 0.00 45.32 3.18
2228 3441 1.535437 GCATTGCTGCTGATTGTAGGC 60.535 52.381 0.16 0.00 45.32 3.93
2229 3442 2.022195 CATTGCTGCTGATTGTAGGCT 58.978 47.619 0.00 0.00 0.00 4.58
2230 3443 1.456296 TTGCTGCTGATTGTAGGCTG 58.544 50.000 0.00 0.00 0.00 4.85
2231 3444 1.028330 TGCTGCTGATTGTAGGCTGC 61.028 55.000 0.00 0.00 46.12 5.25
2232 3445 1.028330 GCTGCTGATTGTAGGCTGCA 61.028 55.000 0.00 0.00 45.56 4.41
2233 3446 1.676746 CTGCTGATTGTAGGCTGCAT 58.323 50.000 6.01 0.00 38.11 3.96
2234 3447 1.602851 CTGCTGATTGTAGGCTGCATC 59.397 52.381 6.01 7.05 38.11 3.91
2235 3448 1.065272 TGCTGATTGTAGGCTGCATCA 60.065 47.619 6.01 11.02 34.68 3.07
2236 3449 2.019249 GCTGATTGTAGGCTGCATCAA 58.981 47.619 6.01 4.00 0.00 2.57
2237 3450 2.223433 GCTGATTGTAGGCTGCATCAAC 60.223 50.000 6.01 4.69 0.00 3.18
2238 3451 3.276857 CTGATTGTAGGCTGCATCAACT 58.723 45.455 6.01 0.00 0.00 3.16
2239 3452 3.011818 TGATTGTAGGCTGCATCAACTG 58.988 45.455 6.01 0.00 0.00 3.16
2240 3453 2.857186 TTGTAGGCTGCATCAACTGA 57.143 45.000 6.01 0.00 0.00 3.41
2241 3454 2.857186 TGTAGGCTGCATCAACTGAA 57.143 45.000 0.00 0.00 0.00 3.02
2242 3455 3.354948 TGTAGGCTGCATCAACTGAAT 57.645 42.857 0.00 0.00 0.00 2.57
2243 3456 3.689347 TGTAGGCTGCATCAACTGAATT 58.311 40.909 0.00 0.00 0.00 2.17
2244 3457 4.081406 TGTAGGCTGCATCAACTGAATTT 58.919 39.130 0.00 0.00 0.00 1.82
2245 3458 5.252547 TGTAGGCTGCATCAACTGAATTTA 58.747 37.500 0.00 0.00 0.00 1.40
2246 3459 4.978083 AGGCTGCATCAACTGAATTTAG 57.022 40.909 0.50 0.00 0.00 1.85
2247 3460 4.592942 AGGCTGCATCAACTGAATTTAGA 58.407 39.130 3.94 0.00 0.00 2.10
2248 3461 4.639310 AGGCTGCATCAACTGAATTTAGAG 59.361 41.667 3.94 0.00 0.00 2.43
2249 3462 4.397417 GGCTGCATCAACTGAATTTAGAGT 59.603 41.667 3.94 0.00 0.00 3.24
2250 3463 5.105997 GGCTGCATCAACTGAATTTAGAGTT 60.106 40.000 3.94 0.00 32.48 3.01
2251 3464 6.385033 GCTGCATCAACTGAATTTAGAGTTT 58.615 36.000 3.94 0.00 29.73 2.66
2252 3465 6.525976 GCTGCATCAACTGAATTTAGAGTTTC 59.474 38.462 3.94 0.00 29.73 2.78
2253 3466 7.574592 GCTGCATCAACTGAATTTAGAGTTTCT 60.575 37.037 3.94 0.00 29.73 2.52
2254 3467 7.810658 TGCATCAACTGAATTTAGAGTTTCTC 58.189 34.615 3.94 0.00 29.73 2.87
2255 3468 7.445096 TGCATCAACTGAATTTAGAGTTTCTCA 59.555 33.333 3.94 0.00 32.06 3.27
2256 3469 8.292448 GCATCAACTGAATTTAGAGTTTCTCAA 58.708 33.333 3.94 0.00 32.06 3.02
2269 3482 7.674471 AGAGTTTCTCAATAACTTTACTGGC 57.326 36.000 0.00 0.00 36.04 4.85
2270 3483 7.454225 AGAGTTTCTCAATAACTTTACTGGCT 58.546 34.615 0.00 0.00 36.04 4.75
2271 3484 8.594550 AGAGTTTCTCAATAACTTTACTGGCTA 58.405 33.333 0.00 0.00 36.04 3.93
2272 3485 9.216117 GAGTTTCTCAATAACTTTACTGGCTAA 57.784 33.333 0.00 0.00 36.04 3.09
2273 3486 9.740710 AGTTTCTCAATAACTTTACTGGCTAAT 57.259 29.630 0.00 0.00 32.06 1.73
2277 3490 9.733556 TCTCAATAACTTTACTGGCTAATTTCA 57.266 29.630 0.00 0.00 0.00 2.69
2284 3497 9.515226 AACTTTACTGGCTAATTTCATCTAACA 57.485 29.630 0.00 0.00 0.00 2.41
2285 3498 9.167311 ACTTTACTGGCTAATTTCATCTAACAG 57.833 33.333 0.00 0.00 0.00 3.16
2286 3499 7.553881 TTACTGGCTAATTTCATCTAACAGC 57.446 36.000 0.00 0.00 0.00 4.40
2287 3500 5.500234 ACTGGCTAATTTCATCTAACAGCA 58.500 37.500 0.00 0.00 0.00 4.41
2288 3501 6.125029 ACTGGCTAATTTCATCTAACAGCAT 58.875 36.000 0.00 0.00 0.00 3.79
2289 3502 6.604795 ACTGGCTAATTTCATCTAACAGCATT 59.395 34.615 0.00 0.00 0.00 3.56
2290 3503 6.798482 TGGCTAATTTCATCTAACAGCATTG 58.202 36.000 0.00 0.00 0.00 2.82
2291 3504 5.689068 GGCTAATTTCATCTAACAGCATTGC 59.311 40.000 0.00 0.00 0.00 3.56
2292 3505 6.460676 GGCTAATTTCATCTAACAGCATTGCT 60.461 38.462 5.03 5.03 40.77 3.91
2402 3615 8.434661 CAGGTTCGATTTGTTTCAATATTTTGG 58.565 33.333 0.00 0.00 33.44 3.28
3452 7424 1.418637 TCAGTTGTTCCCAGTACCACC 59.581 52.381 0.00 0.00 0.00 4.61
4079 8301 3.004944 GGAATGATGGGAGAGTAGACGAC 59.995 52.174 0.00 0.00 0.00 4.34
4169 8391 4.020039 AGGATGATTGCTCTCCATGATCTC 60.020 45.833 0.00 0.00 0.00 2.75
4400 8913 3.947910 AATGCATTGTCCAGGAAAGTG 57.052 42.857 12.09 0.00 0.00 3.16
4457 9051 4.457603 TGCTCTTACTTGAGACTGAGACTC 59.542 45.833 4.99 4.99 36.23 3.36
4595 9267 3.017581 ATGACCTGAGGTGGCCCC 61.018 66.667 9.89 0.03 35.25 5.80
4641 9313 7.106239 TGGTTGGTAGAGATCAAGAAGAAATC 58.894 38.462 0.00 0.00 0.00 2.17
4742 9414 5.070685 ACCCTGTTTGTACTGAGATTTTCC 58.929 41.667 0.00 0.00 0.00 3.13
4841 9514 5.880054 AGCGTATATATTTGGCATGGTTC 57.120 39.130 0.00 0.00 0.00 3.62
4847 9520 1.278537 ATTTGGCATGGTTCCCTTGG 58.721 50.000 0.00 0.00 0.00 3.61
4848 9521 0.105246 TTTGGCATGGTTCCCTTGGT 60.105 50.000 0.00 0.00 0.00 3.67
4849 9522 0.541764 TTGGCATGGTTCCCTTGGTC 60.542 55.000 0.00 0.00 0.00 4.02
4850 9523 1.384191 GGCATGGTTCCCTTGGTCT 59.616 57.895 0.00 0.00 0.00 3.85
4851 9524 0.623723 GGCATGGTTCCCTTGGTCTA 59.376 55.000 0.00 0.00 0.00 2.59
4852 9525 1.682087 GGCATGGTTCCCTTGGTCTAC 60.682 57.143 0.00 0.00 0.00 2.59
4853 9526 1.282157 GCATGGTTCCCTTGGTCTACT 59.718 52.381 0.00 0.00 0.00 2.57
4854 9527 2.681097 GCATGGTTCCCTTGGTCTACTC 60.681 54.545 0.00 0.00 0.00 2.59
4857 9530 1.066071 GGTTCCCTTGGTCTACTCAGC 60.066 57.143 0.00 0.00 0.00 4.26
4862 9535 2.366533 CCTTGGTCTACTCAGCGACTA 58.633 52.381 0.00 0.00 0.00 2.59
4865 9538 4.355437 CTTGGTCTACTCAGCGACTAATG 58.645 47.826 0.00 0.00 31.64 1.90
4866 9539 2.688446 TGGTCTACTCAGCGACTAATGG 59.312 50.000 0.00 0.00 0.00 3.16
4867 9540 2.950309 GGTCTACTCAGCGACTAATGGA 59.050 50.000 0.00 0.00 0.00 3.41
4868 9541 3.243134 GGTCTACTCAGCGACTAATGGAC 60.243 52.174 0.00 0.00 0.00 4.02
4869 9542 2.950309 TCTACTCAGCGACTAATGGACC 59.050 50.000 0.00 0.00 0.00 4.46
4870 9543 1.557099 ACTCAGCGACTAATGGACCA 58.443 50.000 0.00 0.00 0.00 4.02
4871 9544 1.478510 ACTCAGCGACTAATGGACCAG 59.521 52.381 0.00 0.00 0.00 4.00
4872 9545 1.751351 CTCAGCGACTAATGGACCAGA 59.249 52.381 0.00 0.00 0.00 3.86
4873 9546 1.476891 TCAGCGACTAATGGACCAGAC 59.523 52.381 0.00 0.00 0.00 3.51
4875 9548 0.527817 GCGACTAATGGACCAGACCG 60.528 60.000 0.00 0.44 0.00 4.79
4876 9549 0.527817 CGACTAATGGACCAGACCGC 60.528 60.000 0.00 0.00 0.00 5.68
4878 9551 0.617820 ACTAATGGACCAGACCGCCT 60.618 55.000 0.00 0.00 0.00 5.52
4879 9552 0.105039 CTAATGGACCAGACCGCCTC 59.895 60.000 0.00 0.00 0.00 4.70
4880 9553 0.325296 TAATGGACCAGACCGCCTCT 60.325 55.000 0.00 0.00 0.00 3.69
4881 9554 1.201429 AATGGACCAGACCGCCTCTT 61.201 55.000 0.00 0.00 0.00 2.85
4882 9555 1.201429 ATGGACCAGACCGCCTCTTT 61.201 55.000 0.00 0.00 0.00 2.52
4883 9556 1.079057 GGACCAGACCGCCTCTTTC 60.079 63.158 0.00 0.00 0.00 2.62
4884 9557 1.545706 GGACCAGACCGCCTCTTTCT 61.546 60.000 0.00 0.00 0.00 2.52
4885 9558 0.390472 GACCAGACCGCCTCTTTCTG 60.390 60.000 0.00 0.00 37.17 3.02
4886 9559 0.832135 ACCAGACCGCCTCTTTCTGA 60.832 55.000 0.00 0.00 39.36 3.27
4887 9560 0.108424 CCAGACCGCCTCTTTCTGAG 60.108 60.000 0.00 0.00 39.36 3.35
4888 9561 0.605589 CAGACCGCCTCTTTCTGAGT 59.394 55.000 0.00 0.00 39.36 3.41
4889 9562 0.892063 AGACCGCCTCTTTCTGAGTC 59.108 55.000 0.00 0.00 41.11 3.36
4890 9563 0.892063 GACCGCCTCTTTCTGAGTCT 59.108 55.000 0.00 0.00 41.11 3.24
4891 9564 1.273886 GACCGCCTCTTTCTGAGTCTT 59.726 52.381 0.00 0.00 41.11 3.01
4929 9602 5.233083 TCATCAATCCTGTATCCATGGTC 57.767 43.478 12.58 4.59 0.00 4.02
4930 9603 3.751479 TCAATCCTGTATCCATGGTCG 57.249 47.619 12.58 0.00 0.00 4.79
4932 9605 3.709141 TCAATCCTGTATCCATGGTCGAA 59.291 43.478 12.58 0.00 0.00 3.71
4950 9630 0.706433 AACATGGGAGTGGCTGGAAT 59.294 50.000 0.00 0.00 0.00 3.01
4980 9660 8.579850 TTTTGGCAGATCTTACAATAGTGAAT 57.420 30.769 9.07 0.00 0.00 2.57
4981 9661 9.679661 TTTTGGCAGATCTTACAATAGTGAATA 57.320 29.630 9.07 0.00 0.00 1.75
4982 9662 8.662781 TTGGCAGATCTTACAATAGTGAATAC 57.337 34.615 0.00 0.00 0.00 1.89
4983 9663 7.791029 TGGCAGATCTTACAATAGTGAATACA 58.209 34.615 0.00 0.00 0.00 2.29
5011 9691 8.950403 AATAAAATTTACGCTGTCAGAACTTC 57.050 30.769 3.32 0.00 0.00 3.01
5013 9693 6.560253 AAATTTACGCTGTCAGAACTTCAT 57.440 33.333 3.32 0.00 0.00 2.57
5048 9776 9.952188 TTCAGAAGACATAAGTTGACTATATCG 57.048 33.333 0.00 0.00 29.89 2.92
5051 9779 8.569641 AGAAGACATAAGTTGACTATATCGTCC 58.430 37.037 5.03 0.00 32.97 4.79
5131 9859 1.228154 GGAGGTTTGCCACTCCGTT 60.228 57.895 0.00 0.00 43.37 4.44
5136 9864 0.868406 GTTTGCCACTCCGTTCTCTG 59.132 55.000 0.00 0.00 0.00 3.35
5309 10045 2.861006 GTTTCGCTGCGTCTTCCC 59.139 61.111 22.48 1.87 0.00 3.97
5353 10089 5.306532 TGAGCATCAAAAGCAAGATCTTC 57.693 39.130 4.57 0.94 45.97 2.87
5354 10090 4.142752 TGAGCATCAAAAGCAAGATCTTCG 60.143 41.667 4.57 2.87 45.97 3.79
5355 10091 3.128242 AGCATCAAAAGCAAGATCTTCGG 59.872 43.478 4.57 0.00 0.00 4.30
5356 10092 3.119708 GCATCAAAAGCAAGATCTTCGGT 60.120 43.478 4.57 4.49 0.00 4.69
5357 10093 4.409570 CATCAAAAGCAAGATCTTCGGTG 58.590 43.478 4.57 0.00 0.00 4.94
5358 10094 3.476552 TCAAAAGCAAGATCTTCGGTGT 58.523 40.909 4.57 0.00 0.00 4.16
5359 10095 3.250762 TCAAAAGCAAGATCTTCGGTGTG 59.749 43.478 4.57 9.07 0.00 3.82
5360 10096 2.550830 AAGCAAGATCTTCGGTGTGT 57.449 45.000 4.57 0.00 0.00 3.72
5361 10097 3.678056 AAGCAAGATCTTCGGTGTGTA 57.322 42.857 4.57 0.00 0.00 2.90
5362 10098 3.238108 AGCAAGATCTTCGGTGTGTAG 57.762 47.619 4.57 0.00 0.00 2.74
5363 10099 2.093973 AGCAAGATCTTCGGTGTGTAGG 60.094 50.000 4.57 0.00 0.00 3.18
5364 10100 2.893637 CAAGATCTTCGGTGTGTAGGG 58.106 52.381 4.57 0.00 0.00 3.53
5365 10101 2.496070 CAAGATCTTCGGTGTGTAGGGA 59.504 50.000 4.57 0.00 0.00 4.20
5366 10102 3.033659 AGATCTTCGGTGTGTAGGGAT 57.966 47.619 0.00 0.00 0.00 3.85
5367 10103 3.375699 AGATCTTCGGTGTGTAGGGATT 58.624 45.455 0.00 0.00 0.00 3.01
5368 10104 3.133003 AGATCTTCGGTGTGTAGGGATTG 59.867 47.826 0.00 0.00 0.00 2.67
5369 10105 2.253610 TCTTCGGTGTGTAGGGATTGT 58.746 47.619 0.00 0.00 0.00 2.71
5370 10106 2.232941 TCTTCGGTGTGTAGGGATTGTC 59.767 50.000 0.00 0.00 0.00 3.18
5371 10107 1.933021 TCGGTGTGTAGGGATTGTCT 58.067 50.000 0.00 0.00 0.00 3.41
5372 10108 1.548719 TCGGTGTGTAGGGATTGTCTG 59.451 52.381 0.00 0.00 0.00 3.51
5373 10109 1.548719 CGGTGTGTAGGGATTGTCTGA 59.451 52.381 0.00 0.00 0.00 3.27
5374 10110 2.168521 CGGTGTGTAGGGATTGTCTGAT 59.831 50.000 0.00 0.00 0.00 2.90
5375 10111 3.383505 CGGTGTGTAGGGATTGTCTGATA 59.616 47.826 0.00 0.00 0.00 2.15
5376 10112 4.694339 GGTGTGTAGGGATTGTCTGATAC 58.306 47.826 0.00 0.00 0.00 2.24
5377 10113 4.406003 GGTGTGTAGGGATTGTCTGATACT 59.594 45.833 0.00 0.00 0.00 2.12
5378 10114 5.452077 GGTGTGTAGGGATTGTCTGATACTC 60.452 48.000 0.00 0.00 0.00 2.59
5379 10115 4.649674 TGTGTAGGGATTGTCTGATACTCC 59.350 45.833 2.70 2.70 0.00 3.85
5380 10116 4.039366 GTGTAGGGATTGTCTGATACTCCC 59.961 50.000 18.41 18.41 41.14 4.30
5381 10117 3.715648 AGGGATTGTCTGATACTCCCT 57.284 47.619 21.68 21.68 44.46 4.20
5382 10118 3.582164 AGGGATTGTCTGATACTCCCTC 58.418 50.000 21.68 3.53 45.59 4.30
5383 10119 2.635427 GGGATTGTCTGATACTCCCTCC 59.365 54.545 18.68 2.83 38.84 4.30
5384 10120 3.309296 GGATTGTCTGATACTCCCTCCA 58.691 50.000 0.09 0.00 0.00 3.86
5385 10121 3.906846 GGATTGTCTGATACTCCCTCCAT 59.093 47.826 0.09 0.00 0.00 3.41
5386 10122 4.349342 GGATTGTCTGATACTCCCTCCATT 59.651 45.833 0.09 0.00 0.00 3.16
5387 10123 5.163152 GGATTGTCTGATACTCCCTCCATTT 60.163 44.000 0.09 0.00 0.00 2.32
5388 10124 5.779241 TTGTCTGATACTCCCTCCATTTT 57.221 39.130 0.00 0.00 0.00 1.82
5389 10125 6.884472 TTGTCTGATACTCCCTCCATTTTA 57.116 37.500 0.00 0.00 0.00 1.52
5390 10126 6.884472 TGTCTGATACTCCCTCCATTTTAA 57.116 37.500 0.00 0.00 0.00 1.52
5391 10127 7.265599 TGTCTGATACTCCCTCCATTTTAAA 57.734 36.000 0.00 0.00 0.00 1.52
5392 10128 7.695055 TGTCTGATACTCCCTCCATTTTAAAA 58.305 34.615 2.51 2.51 0.00 1.52
5393 10129 8.336235 TGTCTGATACTCCCTCCATTTTAAAAT 58.664 33.333 7.64 7.64 0.00 1.82
5394 10130 9.847224 GTCTGATACTCCCTCCATTTTAAAATA 57.153 33.333 12.98 0.00 0.00 1.40
5401 10137 9.990868 ACTCCCTCCATTTTAAAATATAGTGTT 57.009 29.630 12.98 0.00 0.00 3.32
5403 10139 8.691797 TCCCTCCATTTTAAAATATAGTGTTGC 58.308 33.333 12.98 0.00 0.00 4.17
5404 10140 7.647715 CCCTCCATTTTAAAATATAGTGTTGCG 59.352 37.037 12.98 0.00 0.00 4.85
5405 10141 8.188139 CCTCCATTTTAAAATATAGTGTTGCGT 58.812 33.333 12.98 0.00 0.00 5.24
5406 10142 9.221775 CTCCATTTTAAAATATAGTGTTGCGTC 57.778 33.333 12.98 0.00 0.00 5.19
5407 10143 8.952278 TCCATTTTAAAATATAGTGTTGCGTCT 58.048 29.630 12.98 0.00 0.00 4.18
5408 10144 9.567848 CCATTTTAAAATATAGTGTTGCGTCTT 57.432 29.630 12.98 0.00 0.00 3.01
5412 10148 9.820229 TTTAAAATATAGTGTTGCGTCTTTCAG 57.180 29.630 0.00 0.00 0.00 3.02
5413 10149 5.470845 AATATAGTGTTGCGTCTTTCAGC 57.529 39.130 0.00 0.00 0.00 4.26
5414 10150 2.232756 TAGTGTTGCGTCTTTCAGCA 57.767 45.000 0.00 0.00 42.15 4.41
5415 10151 0.657840 AGTGTTGCGTCTTTCAGCAC 59.342 50.000 2.47 2.47 43.69 4.40
5416 10152 0.657840 GTGTTGCGTCTTTCAGCACT 59.342 50.000 3.34 0.00 43.69 4.40
5417 10153 0.937304 TGTTGCGTCTTTCAGCACTC 59.063 50.000 0.00 0.00 43.69 3.51
5418 10154 0.111089 GTTGCGTCTTTCAGCACTCG 60.111 55.000 0.00 0.00 43.69 4.18
5419 10155 1.221466 TTGCGTCTTTCAGCACTCGG 61.221 55.000 0.00 0.00 43.69 4.63
5420 10156 3.016474 GCGTCTTTCAGCACTCGGC 62.016 63.158 0.00 0.00 45.30 5.54
5429 10165 4.683334 GCACTCGGCGGTTGTTGC 62.683 66.667 7.21 5.21 0.00 4.17
5437 10173 4.025401 CGGTTGTTGCCCGTGAGC 62.025 66.667 0.00 0.00 40.59 4.26
5438 10174 2.904866 GGTTGTTGCCCGTGAGCA 60.905 61.111 0.00 0.00 42.17 4.26
5439 10175 2.268076 GGTTGTTGCCCGTGAGCAT 61.268 57.895 0.00 0.00 43.64 3.79
5440 10176 1.210155 GTTGTTGCCCGTGAGCATC 59.790 57.895 0.00 0.00 43.64 3.91
5478 10231 3.381949 GTGCGTAGGGATTGTCTGATAC 58.618 50.000 0.00 0.00 0.00 2.24
5479 10232 3.068307 GTGCGTAGGGATTGTCTGATACT 59.932 47.826 0.00 0.00 0.00 2.12
5480 10233 3.318275 TGCGTAGGGATTGTCTGATACTC 59.682 47.826 0.00 0.00 0.00 2.59
5481 10234 3.305471 GCGTAGGGATTGTCTGATACTCC 60.305 52.174 2.70 2.70 0.00 3.85
5482 10235 3.256136 CGTAGGGATTGTCTGATACTCCC 59.744 52.174 18.41 18.41 41.14 4.30
5483 10236 3.715648 AGGGATTGTCTGATACTCCCT 57.284 47.619 21.68 21.68 44.46 4.20
5484 10237 3.582164 AGGGATTGTCTGATACTCCCTC 58.418 50.000 21.68 3.53 45.59 4.30
5485 10238 3.208692 AGGGATTGTCTGATACTCCCTCT 59.791 47.826 21.68 6.24 45.59 3.69
5486 10239 3.323403 GGGATTGTCTGATACTCCCTCTG 59.677 52.174 18.68 0.00 38.84 3.35
5487 10240 3.964031 GGATTGTCTGATACTCCCTCTGT 59.036 47.826 0.09 0.00 0.00 3.41
5488 10241 4.407296 GGATTGTCTGATACTCCCTCTGTT 59.593 45.833 0.09 0.00 0.00 3.16
5489 10242 5.104735 GGATTGTCTGATACTCCCTCTGTTT 60.105 44.000 0.09 0.00 0.00 2.83
5490 10243 5.825593 TTGTCTGATACTCCCTCTGTTTT 57.174 39.130 0.00 0.00 0.00 2.43
5491 10244 6.928348 TTGTCTGATACTCCCTCTGTTTTA 57.072 37.500 0.00 0.00 0.00 1.52
5492 10245 6.928348 TGTCTGATACTCCCTCTGTTTTAA 57.072 37.500 0.00 0.00 0.00 1.52
5493 10246 7.311092 TGTCTGATACTCCCTCTGTTTTAAA 57.689 36.000 0.00 0.00 0.00 1.52
5494 10247 7.741785 TGTCTGATACTCCCTCTGTTTTAAAA 58.258 34.615 0.00 0.00 0.00 1.52
5495 10248 8.383175 TGTCTGATACTCCCTCTGTTTTAAAAT 58.617 33.333 3.52 0.00 0.00 1.82
5496 10249 9.886132 GTCTGATACTCCCTCTGTTTTAAAATA 57.114 33.333 3.52 0.13 0.00 1.40
5503 10256 9.449719 ACTCCCTCTGTTTTAAAATATAGTGTG 57.550 33.333 3.52 0.00 0.00 3.82
5504 10257 8.276252 TCCCTCTGTTTTAAAATATAGTGTGC 57.724 34.615 3.52 0.00 0.00 4.57
5505 10258 7.338449 TCCCTCTGTTTTAAAATATAGTGTGCC 59.662 37.037 3.52 0.00 0.00 5.01
5506 10259 7.416326 CCCTCTGTTTTAAAATATAGTGTGCCC 60.416 40.741 3.52 0.00 0.00 5.36
5507 10260 7.079182 TCTGTTTTAAAATATAGTGTGCCCG 57.921 36.000 3.52 0.00 0.00 6.13
5508 10261 5.642686 TGTTTTAAAATATAGTGTGCCCGC 58.357 37.500 3.52 0.00 0.00 6.13
5509 10262 4.539509 TTTAAAATATAGTGTGCCCGCG 57.460 40.909 0.00 0.00 0.00 6.46
5510 10263 2.032680 AAAATATAGTGTGCCCGCGT 57.967 45.000 4.92 0.00 0.00 6.01
5511 10264 2.032680 AAATATAGTGTGCCCGCGTT 57.967 45.000 4.92 0.00 0.00 4.84
5512 10265 2.032680 AATATAGTGTGCCCGCGTTT 57.967 45.000 4.92 0.00 0.00 3.60
5513 10266 2.032680 ATATAGTGTGCCCGCGTTTT 57.967 45.000 4.92 0.00 0.00 2.43
5514 10267 1.810959 TATAGTGTGCCCGCGTTTTT 58.189 45.000 4.92 0.00 0.00 1.94
5515 10268 0.519961 ATAGTGTGCCCGCGTTTTTC 59.480 50.000 4.92 0.00 0.00 2.29
5516 10269 1.833434 TAGTGTGCCCGCGTTTTTCG 61.833 55.000 4.92 0.00 43.12 3.46
5517 10270 2.895865 TGTGCCCGCGTTTTTCGA 60.896 55.556 4.92 0.00 42.86 3.71
5518 10271 2.127383 GTGCCCGCGTTTTTCGAG 60.127 61.111 4.92 0.00 42.86 4.04
5526 10279 3.717350 CGCGTTTTTCGAGGTTTATCT 57.283 42.857 0.00 0.00 42.86 1.98
5527 10280 4.061570 CGCGTTTTTCGAGGTTTATCTT 57.938 40.909 0.00 0.00 42.86 2.40
5528 10281 3.838550 CGCGTTTTTCGAGGTTTATCTTG 59.161 43.478 0.00 0.00 42.86 3.02
5529 10282 4.376615 CGCGTTTTTCGAGGTTTATCTTGA 60.377 41.667 0.00 0.00 42.86 3.02
5530 10283 4.844522 GCGTTTTTCGAGGTTTATCTTGAC 59.155 41.667 0.00 0.00 42.86 3.18
5531 10284 5.379827 CGTTTTTCGAGGTTTATCTTGACC 58.620 41.667 0.00 0.00 42.86 4.02
5532 10285 5.049954 CGTTTTTCGAGGTTTATCTTGACCA 60.050 40.000 0.00 0.00 42.86 4.02
5533 10286 6.348213 CGTTTTTCGAGGTTTATCTTGACCAT 60.348 38.462 0.00 0.00 42.86 3.55
5534 10287 7.148540 CGTTTTTCGAGGTTTATCTTGACCATA 60.149 37.037 0.00 0.00 42.86 2.74
5535 10288 8.508875 GTTTTTCGAGGTTTATCTTGACCATAA 58.491 33.333 0.00 0.00 38.42 1.90
5536 10289 8.624367 TTTTCGAGGTTTATCTTGACCATAAA 57.376 30.769 0.00 0.00 38.42 1.40
5537 10290 8.801882 TTTCGAGGTTTATCTTGACCATAAAT 57.198 30.769 0.00 0.00 38.42 1.40
5538 10291 8.801882 TTCGAGGTTTATCTTGACCATAAATT 57.198 30.769 0.00 0.00 38.42 1.82
5539 10292 8.801882 TCGAGGTTTATCTTGACCATAAATTT 57.198 30.769 0.00 0.00 38.42 1.82
5540 10293 9.893634 TCGAGGTTTATCTTGACCATAAATTTA 57.106 29.630 0.00 0.00 38.42 1.40
5550 10303 9.527157 TCTTGACCATAAATTTAACCAATGAGA 57.473 29.630 1.21 0.00 0.00 3.27
5551 10304 9.573133 CTTGACCATAAATTTAACCAATGAGAC 57.427 33.333 1.21 0.00 0.00 3.36
5552 10305 8.062065 TGACCATAAATTTAACCAATGAGACC 57.938 34.615 1.21 0.00 0.00 3.85
5553 10306 7.095695 ACCATAAATTTAACCAATGAGACCG 57.904 36.000 1.21 0.00 0.00 4.79
5554 10307 6.887545 ACCATAAATTTAACCAATGAGACCGA 59.112 34.615 1.21 0.00 0.00 4.69
5555 10308 7.148137 ACCATAAATTTAACCAATGAGACCGAC 60.148 37.037 1.21 0.00 0.00 4.79
5556 10309 7.067008 CCATAAATTTAACCAATGAGACCGACT 59.933 37.037 1.21 0.00 0.00 4.18
5557 10310 5.880054 AATTTAACCAATGAGACCGACTG 57.120 39.130 0.00 0.00 0.00 3.51
5558 10311 2.380084 TAACCAATGAGACCGACTGC 57.620 50.000 0.00 0.00 0.00 4.40
5559 10312 0.670546 AACCAATGAGACCGACTGCG 60.671 55.000 0.00 0.00 37.24 5.18
5560 10313 1.215382 CCAATGAGACCGACTGCGA 59.785 57.895 0.00 0.00 40.82 5.10
5561 10314 1.078759 CCAATGAGACCGACTGCGAC 61.079 60.000 0.00 0.00 40.82 5.19
5562 10315 1.154016 AATGAGACCGACTGCGACG 60.154 57.895 0.00 0.00 40.82 5.12
5569 10322 4.717629 CGACTGCGACGGGAGCAA 62.718 66.667 0.00 0.00 44.67 3.91
5570 10323 2.357034 GACTGCGACGGGAGCAAA 60.357 61.111 0.00 0.00 44.67 3.68
5571 10324 1.959226 GACTGCGACGGGAGCAAAA 60.959 57.895 0.00 0.00 44.67 2.44
5572 10325 1.503818 GACTGCGACGGGAGCAAAAA 61.504 55.000 0.00 0.00 44.67 1.94
5573 10326 0.889186 ACTGCGACGGGAGCAAAAAT 60.889 50.000 0.00 0.00 44.67 1.82
5574 10327 0.240945 CTGCGACGGGAGCAAAAATT 59.759 50.000 0.00 0.00 44.67 1.82
5575 10328 1.466950 CTGCGACGGGAGCAAAAATTA 59.533 47.619 0.00 0.00 44.67 1.40
5576 10329 2.088423 TGCGACGGGAGCAAAAATTAT 58.912 42.857 0.00 0.00 42.18 1.28
5577 10330 3.271729 TGCGACGGGAGCAAAAATTATA 58.728 40.909 0.00 0.00 42.18 0.98
5578 10331 3.880490 TGCGACGGGAGCAAAAATTATAT 59.120 39.130 0.00 0.00 42.18 0.86
5579 10332 5.057819 TGCGACGGGAGCAAAAATTATATA 58.942 37.500 0.00 0.00 42.18 0.86
5580 10333 5.527951 TGCGACGGGAGCAAAAATTATATAA 59.472 36.000 0.00 0.00 42.18 0.98
5581 10334 6.205853 TGCGACGGGAGCAAAAATTATATAAT 59.794 34.615 1.91 1.91 42.18 1.28
5582 10335 7.081976 GCGACGGGAGCAAAAATTATATAATT 58.918 34.615 13.85 13.85 34.63 1.40
5583 10336 7.060633 GCGACGGGAGCAAAAATTATATAATTG 59.939 37.037 19.08 11.08 34.02 2.32
5584 10337 7.060633 CGACGGGAGCAAAAATTATATAATTGC 59.939 37.037 19.08 18.70 36.14 3.56
5585 10338 7.721402 ACGGGAGCAAAAATTATATAATTGCA 58.279 30.769 24.05 0.00 36.14 4.08
5586 10339 8.200792 ACGGGAGCAAAAATTATATAATTGCAA 58.799 29.630 24.05 0.00 36.14 4.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
162 215 7.601508 TCCCTTTTCTCGTAGATTTGTTTACTC 59.398 37.037 0.00 0.00 33.89 2.59
165 218 8.680039 TTTCCCTTTTCTCGTAGATTTGTTTA 57.320 30.769 0.00 0.00 33.89 2.01
166 219 7.576861 TTTCCCTTTTCTCGTAGATTTGTTT 57.423 32.000 0.00 0.00 33.89 2.83
167 220 7.284716 AGTTTTCCCTTTTCTCGTAGATTTGTT 59.715 33.333 0.00 0.00 33.89 2.83
168 221 6.771267 AGTTTTCCCTTTTCTCGTAGATTTGT 59.229 34.615 0.00 0.00 33.89 2.83
170 223 7.818997 AAGTTTTCCCTTTTCTCGTAGATTT 57.181 32.000 0.00 0.00 33.89 2.17
171 224 7.818997 AAAGTTTTCCCTTTTCTCGTAGATT 57.181 32.000 0.00 0.00 29.71 2.40
172 225 7.818997 AAAAGTTTTCCCTTTTCTCGTAGAT 57.181 32.000 0.00 0.00 39.80 1.98
174 227 7.228108 ACCTAAAAGTTTTCCCTTTTCTCGTAG 59.772 37.037 3.60 0.00 42.20 3.51
175 228 7.056006 ACCTAAAAGTTTTCCCTTTTCTCGTA 58.944 34.615 3.60 0.00 42.20 3.43
177 230 6.387041 ACCTAAAAGTTTTCCCTTTTCTCG 57.613 37.500 3.60 0.00 42.20 4.04
178 231 7.859377 CGTAACCTAAAAGTTTTCCCTTTTCTC 59.141 37.037 3.60 0.00 42.20 2.87
179 232 7.557358 TCGTAACCTAAAAGTTTTCCCTTTTCT 59.443 33.333 3.60 0.00 42.20 2.52
180 233 7.645340 GTCGTAACCTAAAAGTTTTCCCTTTTC 59.355 37.037 3.60 0.00 42.20 2.29
181 234 7.122501 TGTCGTAACCTAAAAGTTTTCCCTTTT 59.877 33.333 3.60 4.54 44.55 2.27
182 235 6.602803 TGTCGTAACCTAAAAGTTTTCCCTTT 59.397 34.615 3.60 0.00 36.23 3.11
183 236 6.121590 TGTCGTAACCTAAAAGTTTTCCCTT 58.878 36.000 3.60 0.00 0.00 3.95
184 237 5.683681 TGTCGTAACCTAAAAGTTTTCCCT 58.316 37.500 3.60 0.00 0.00 4.20
185 238 6.038603 ACTTGTCGTAACCTAAAAGTTTTCCC 59.961 38.462 3.60 0.00 0.00 3.97
186 239 6.908820 CACTTGTCGTAACCTAAAAGTTTTCC 59.091 38.462 3.60 0.00 0.00 3.13
187 240 7.466805 ACACTTGTCGTAACCTAAAAGTTTTC 58.533 34.615 3.60 0.00 0.00 2.29
188 241 7.381766 ACACTTGTCGTAACCTAAAAGTTTT 57.618 32.000 6.06 6.06 0.00 2.43
189 242 6.037500 GGACACTTGTCGTAACCTAAAAGTTT 59.962 38.462 3.32 0.00 45.65 2.66
190 243 5.525012 GGACACTTGTCGTAACCTAAAAGTT 59.475 40.000 3.32 0.00 45.65 2.66
191 244 5.052481 GGACACTTGTCGTAACCTAAAAGT 58.948 41.667 3.32 0.00 45.65 2.66
192 245 5.176958 CAGGACACTTGTCGTAACCTAAAAG 59.823 44.000 4.34 0.00 45.65 2.27
193 246 5.051816 CAGGACACTTGTCGTAACCTAAAA 58.948 41.667 4.34 0.00 45.65 1.52
194 247 4.341806 TCAGGACACTTGTCGTAACCTAAA 59.658 41.667 4.34 0.00 45.65 1.85
195 248 3.890756 TCAGGACACTTGTCGTAACCTAA 59.109 43.478 4.34 0.00 45.65 2.69
196 249 3.489355 TCAGGACACTTGTCGTAACCTA 58.511 45.455 4.34 0.00 45.65 3.08
197 250 2.296471 CTCAGGACACTTGTCGTAACCT 59.704 50.000 4.34 0.00 45.65 3.50
199 252 3.637998 TCTCAGGACACTTGTCGTAAC 57.362 47.619 4.34 0.00 45.65 2.50
200 253 3.887110 TCTTCTCAGGACACTTGTCGTAA 59.113 43.478 4.34 0.00 45.65 3.18
203 256 3.249091 CATCTTCTCAGGACACTTGTCG 58.751 50.000 3.32 0.00 45.65 4.35
206 259 2.568956 TCCCATCTTCTCAGGACACTTG 59.431 50.000 0.00 0.00 0.00 3.16
207 260 2.836981 CTCCCATCTTCTCAGGACACTT 59.163 50.000 0.00 0.00 0.00 3.16
208 261 2.225496 ACTCCCATCTTCTCAGGACACT 60.225 50.000 0.00 0.00 0.00 3.55
209 262 2.093764 CACTCCCATCTTCTCAGGACAC 60.094 54.545 0.00 0.00 0.00 3.67
210 263 2.182827 CACTCCCATCTTCTCAGGACA 58.817 52.381 0.00 0.00 0.00 4.02
212 265 2.461695 GTCACTCCCATCTTCTCAGGA 58.538 52.381 0.00 0.00 0.00 3.86
213 266 1.484240 GGTCACTCCCATCTTCTCAGG 59.516 57.143 0.00 0.00 0.00 3.86
214 267 2.465813 AGGTCACTCCCATCTTCTCAG 58.534 52.381 0.00 0.00 36.75 3.35
215 268 2.630889 AGGTCACTCCCATCTTCTCA 57.369 50.000 0.00 0.00 36.75 3.27
216 269 3.261897 TCAAAGGTCACTCCCATCTTCTC 59.738 47.826 0.00 0.00 36.75 2.87
217 270 3.251484 TCAAAGGTCACTCCCATCTTCT 58.749 45.455 0.00 0.00 36.75 2.85
219 272 4.453480 TTTCAAAGGTCACTCCCATCTT 57.547 40.909 0.00 0.00 36.75 2.40
220 273 4.043310 TCATTTCAAAGGTCACTCCCATCT 59.957 41.667 0.00 0.00 36.75 2.90
222 275 4.202609 ACTCATTTCAAAGGTCACTCCCAT 60.203 41.667 0.00 0.00 36.75 4.00
223 276 3.138283 ACTCATTTCAAAGGTCACTCCCA 59.862 43.478 0.00 0.00 36.75 4.37
224 277 3.756117 ACTCATTTCAAAGGTCACTCCC 58.244 45.455 0.00 0.00 36.75 4.30
225 278 4.695928 GGTACTCATTTCAAAGGTCACTCC 59.304 45.833 0.00 0.00 0.00 3.85
226 279 4.389077 CGGTACTCATTTCAAAGGTCACTC 59.611 45.833 0.00 0.00 0.00 3.51
228 281 3.435671 CCGGTACTCATTTCAAAGGTCAC 59.564 47.826 0.00 0.00 0.00 3.67
229 282 3.071892 ACCGGTACTCATTTCAAAGGTCA 59.928 43.478 4.49 0.00 0.00 4.02
230 283 3.671716 ACCGGTACTCATTTCAAAGGTC 58.328 45.455 4.49 0.00 0.00 3.85
231 284 3.326880 AGACCGGTACTCATTTCAAAGGT 59.673 43.478 7.34 0.00 0.00 3.50
232 285 3.939066 AGACCGGTACTCATTTCAAAGG 58.061 45.455 7.34 0.00 0.00 3.11
233 286 5.941948 AAAGACCGGTACTCATTTCAAAG 57.058 39.130 7.34 0.00 0.00 2.77
234 287 7.989416 ATAAAAGACCGGTACTCATTTCAAA 57.011 32.000 7.34 0.00 0.00 2.69
235 288 7.279313 GCTATAAAAGACCGGTACTCATTTCAA 59.721 37.037 7.34 0.00 0.00 2.69
236 289 6.759827 GCTATAAAAGACCGGTACTCATTTCA 59.240 38.462 7.34 0.00 0.00 2.69
237 290 6.202379 GGCTATAAAAGACCGGTACTCATTTC 59.798 42.308 7.34 0.00 0.00 2.17
238 291 6.053650 GGCTATAAAAGACCGGTACTCATTT 58.946 40.000 7.34 3.44 0.00 2.32
239 292 5.454329 GGGCTATAAAAGACCGGTACTCATT 60.454 44.000 7.34 8.39 46.09 2.57
240 293 4.040095 GGGCTATAAAAGACCGGTACTCAT 59.960 45.833 7.34 0.00 46.09 2.90
241 294 3.385755 GGGCTATAAAAGACCGGTACTCA 59.614 47.826 7.34 0.00 46.09 3.41
242 295 3.987547 GGGCTATAAAAGACCGGTACTC 58.012 50.000 7.34 0.00 46.09 2.59
284 337 9.753674 CCAGAATTAATTCCTATTTATGGGCTA 57.246 33.333 21.86 0.00 37.51 3.93
285 338 8.456124 TCCAGAATTAATTCCTATTTATGGGCT 58.544 33.333 21.86 0.00 34.84 5.19
286 339 8.650143 TCCAGAATTAATTCCTATTTATGGGC 57.350 34.615 21.86 0.00 34.84 5.36
314 367 9.781834 CACGGCATGATTATAGTTTTTCTAAAA 57.218 29.630 0.00 0.00 31.94 1.52
315 368 7.913297 GCACGGCATGATTATAGTTTTTCTAAA 59.087 33.333 0.00 0.00 31.94 1.85
316 369 7.414436 GCACGGCATGATTATAGTTTTTCTAA 58.586 34.615 0.00 0.00 31.94 2.10
317 370 6.017440 GGCACGGCATGATTATAGTTTTTCTA 60.017 38.462 0.00 0.00 0.00 2.10
318 371 5.221048 GGCACGGCATGATTATAGTTTTTCT 60.221 40.000 0.00 0.00 0.00 2.52
319 372 4.976116 GGCACGGCATGATTATAGTTTTTC 59.024 41.667 0.00 0.00 0.00 2.29
320 373 4.932146 GGCACGGCATGATTATAGTTTTT 58.068 39.130 0.00 0.00 0.00 1.94
321 374 4.568152 GGCACGGCATGATTATAGTTTT 57.432 40.909 0.00 0.00 0.00 2.43
1671 1745 4.740822 CCAAACTGGGGAGGCCCG 62.741 72.222 0.00 0.00 46.66 6.13
2136 3349 3.011818 TGATGCAGCCTACAATCAACAG 58.988 45.455 0.00 0.00 0.00 3.16
2139 3352 3.441222 CACTTGATGCAGCCTACAATCAA 59.559 43.478 0.00 5.29 0.00 2.57
2226 3439 4.397417 ACTCTAAATTCAGTTGATGCAGCC 59.603 41.667 0.00 0.00 0.00 4.85
2227 3440 5.557891 ACTCTAAATTCAGTTGATGCAGC 57.442 39.130 0.00 0.00 0.00 5.25
2228 3441 7.814642 AGAAACTCTAAATTCAGTTGATGCAG 58.185 34.615 0.00 0.00 33.01 4.41
2229 3442 7.445096 TGAGAAACTCTAAATTCAGTTGATGCA 59.555 33.333 0.00 0.00 33.01 3.96
2230 3443 7.810658 TGAGAAACTCTAAATTCAGTTGATGC 58.189 34.615 0.00 0.00 33.01 3.91
2243 3456 9.216117 GCCAGTAAAGTTATTGAGAAACTCTAA 57.784 33.333 0.00 0.00 36.17 2.10
2244 3457 8.594550 AGCCAGTAAAGTTATTGAGAAACTCTA 58.405 33.333 0.00 0.00 36.17 2.43
2245 3458 7.454225 AGCCAGTAAAGTTATTGAGAAACTCT 58.546 34.615 0.00 0.00 36.17 3.24
2246 3459 7.674471 AGCCAGTAAAGTTATTGAGAAACTC 57.326 36.000 0.00 0.00 36.17 3.01
2247 3460 9.740710 ATTAGCCAGTAAAGTTATTGAGAAACT 57.259 29.630 0.00 0.00 38.82 2.66
2251 3464 9.733556 TGAAATTAGCCAGTAAAGTTATTGAGA 57.266 29.630 0.00 0.00 0.00 3.27
2258 3471 9.515226 TGTTAGATGAAATTAGCCAGTAAAGTT 57.485 29.630 0.00 0.00 0.00 2.66
2259 3472 9.167311 CTGTTAGATGAAATTAGCCAGTAAAGT 57.833 33.333 0.00 0.00 0.00 2.66
2260 3473 8.125448 GCTGTTAGATGAAATTAGCCAGTAAAG 58.875 37.037 0.00 0.00 0.00 1.85
2261 3474 7.609918 TGCTGTTAGATGAAATTAGCCAGTAAA 59.390 33.333 0.00 0.00 0.00 2.01
2262 3475 7.109501 TGCTGTTAGATGAAATTAGCCAGTAA 58.890 34.615 0.00 0.00 0.00 2.24
2263 3476 6.649155 TGCTGTTAGATGAAATTAGCCAGTA 58.351 36.000 0.00 0.00 0.00 2.74
2264 3477 5.500234 TGCTGTTAGATGAAATTAGCCAGT 58.500 37.500 0.00 0.00 0.00 4.00
2265 3478 6.630444 ATGCTGTTAGATGAAATTAGCCAG 57.370 37.500 0.00 0.00 0.00 4.85
2266 3479 6.681120 GCAATGCTGTTAGATGAAATTAGCCA 60.681 38.462 0.00 0.00 0.00 4.75
2267 3480 5.689068 GCAATGCTGTTAGATGAAATTAGCC 59.311 40.000 0.00 0.00 0.00 3.93
2268 3481 6.501781 AGCAATGCTGTTAGATGAAATTAGC 58.498 36.000 7.07 0.00 37.57 3.09
2285 3498 1.535437 GCCTACAATCAGCAGCAATGC 60.535 52.381 0.00 0.00 0.00 3.56
2286 3499 2.022195 AGCCTACAATCAGCAGCAATG 58.978 47.619 0.00 0.00 0.00 2.82
2287 3500 2.022195 CAGCCTACAATCAGCAGCAAT 58.978 47.619 0.00 0.00 0.00 3.56
2288 3501 1.456296 CAGCCTACAATCAGCAGCAA 58.544 50.000 0.00 0.00 0.00 3.91
2289 3502 1.028330 GCAGCCTACAATCAGCAGCA 61.028 55.000 0.00 0.00 38.71 4.41
2290 3503 1.028330 TGCAGCCTACAATCAGCAGC 61.028 55.000 0.00 0.00 39.24 5.25
2291 3504 1.602851 GATGCAGCCTACAATCAGCAG 59.397 52.381 0.00 0.00 35.26 4.24
2292 3505 1.065272 TGATGCAGCCTACAATCAGCA 60.065 47.619 0.00 0.00 36.34 4.41
2293 3506 1.671979 TGATGCAGCCTACAATCAGC 58.328 50.000 0.00 0.00 0.00 4.26
2294 3507 3.064958 CACTTGATGCAGCCTACAATCAG 59.935 47.826 0.00 0.00 0.00 2.90
2295 3508 3.011818 CACTTGATGCAGCCTACAATCA 58.988 45.455 0.00 0.00 0.00 2.57
2296 3509 3.273434 TCACTTGATGCAGCCTACAATC 58.727 45.455 0.00 0.00 0.00 2.67
2297 3510 3.354948 TCACTTGATGCAGCCTACAAT 57.645 42.857 0.00 0.00 0.00 2.71
2298 3511 2.857186 TCACTTGATGCAGCCTACAA 57.143 45.000 0.00 0.00 0.00 2.41
2299 3512 2.857186 TTCACTTGATGCAGCCTACA 57.143 45.000 0.00 0.00 0.00 2.74
2300 3513 4.708726 AAATTCACTTGATGCAGCCTAC 57.291 40.909 0.00 0.00 0.00 3.18
2301 3514 6.377996 ACAATAAATTCACTTGATGCAGCCTA 59.622 34.615 0.00 0.00 0.00 3.93
2302 3515 5.186409 ACAATAAATTCACTTGATGCAGCCT 59.814 36.000 0.00 0.00 0.00 4.58
2402 3615 4.553330 TTATGGTGACCAAAGGAGAGAC 57.447 45.455 9.06 0.00 36.95 3.36
3452 7424 0.611714 AGTAGTAAACCCTGCCACCG 59.388 55.000 0.00 0.00 0.00 4.94
4079 8301 2.376695 TAGAGACCCAATAGGACCGG 57.623 55.000 0.00 0.00 39.89 5.28
4253 8560 1.134946 CCATCCTCGCCATTTTCCAAC 59.865 52.381 0.00 0.00 0.00 3.77
4400 8913 6.305638 GCCTTATTTCGTTCACAACTTCATTC 59.694 38.462 0.00 0.00 0.00 2.67
4481 9153 0.097150 GCAGCGAACGGAAGAAATCC 59.903 55.000 0.00 0.00 45.57 3.01
4595 9267 4.799949 CCAAAATATCACACCAATGAAGCG 59.200 41.667 0.00 0.00 30.82 4.68
4742 9414 3.821421 ACCACGAAGGAGCCTTTATAG 57.179 47.619 2.85 0.00 41.22 1.31
4841 9514 0.173708 GTCGCTGAGTAGACCAAGGG 59.826 60.000 0.00 0.00 0.00 3.95
4847 9520 3.243134 GGTCCATTAGTCGCTGAGTAGAC 60.243 52.174 2.78 2.78 37.63 2.59
4848 9521 2.950309 GGTCCATTAGTCGCTGAGTAGA 59.050 50.000 0.00 0.00 0.00 2.59
4849 9522 2.688446 TGGTCCATTAGTCGCTGAGTAG 59.312 50.000 0.00 0.00 0.00 2.57
4850 9523 2.688446 CTGGTCCATTAGTCGCTGAGTA 59.312 50.000 0.00 0.00 0.00 2.59
4851 9524 1.478510 CTGGTCCATTAGTCGCTGAGT 59.521 52.381 0.00 0.00 0.00 3.41
4852 9525 1.751351 TCTGGTCCATTAGTCGCTGAG 59.249 52.381 0.00 0.00 0.00 3.35
4853 9526 1.476891 GTCTGGTCCATTAGTCGCTGA 59.523 52.381 0.00 0.00 0.00 4.26
4854 9527 1.471676 GGTCTGGTCCATTAGTCGCTG 60.472 57.143 0.00 0.00 0.00 5.18
4857 9530 0.527817 GCGGTCTGGTCCATTAGTCG 60.528 60.000 0.00 0.00 0.00 4.18
4862 9535 1.201429 AAGAGGCGGTCTGGTCCATT 61.201 55.000 0.00 0.00 34.84 3.16
4865 9538 1.079057 GAAAGAGGCGGTCTGGTCC 60.079 63.158 0.00 0.00 34.84 4.46
4866 9539 0.390472 CAGAAAGAGGCGGTCTGGTC 60.390 60.000 0.00 0.00 36.04 4.02
4867 9540 0.832135 TCAGAAAGAGGCGGTCTGGT 60.832 55.000 0.00 0.00 39.42 4.00
4868 9541 0.108424 CTCAGAAAGAGGCGGTCTGG 60.108 60.000 0.00 0.00 40.84 3.86
4869 9542 3.432517 CTCAGAAAGAGGCGGTCTG 57.567 57.895 0.00 0.00 40.84 3.51
4878 9551 3.511934 GGCCTGTAGAAGACTCAGAAAGA 59.488 47.826 0.00 0.00 0.00 2.52
4879 9552 3.513515 AGGCCTGTAGAAGACTCAGAAAG 59.486 47.826 3.11 0.00 0.00 2.62
4880 9553 3.511477 AGGCCTGTAGAAGACTCAGAAA 58.489 45.455 3.11 0.00 0.00 2.52
4881 9554 3.176924 AGGCCTGTAGAAGACTCAGAA 57.823 47.619 3.11 0.00 0.00 3.02
4882 9555 2.909504 AGGCCTGTAGAAGACTCAGA 57.090 50.000 3.11 0.00 0.00 3.27
4883 9556 3.357203 TGTAGGCCTGTAGAAGACTCAG 58.643 50.000 17.99 0.00 0.00 3.35
4884 9557 3.357203 CTGTAGGCCTGTAGAAGACTCA 58.643 50.000 17.99 0.00 0.00 3.41
4885 9558 2.100087 GCTGTAGGCCTGTAGAAGACTC 59.900 54.545 17.99 0.00 34.27 3.36
4886 9559 2.104170 GCTGTAGGCCTGTAGAAGACT 58.896 52.381 17.99 0.00 34.27 3.24
4887 9560 2.100087 GAGCTGTAGGCCTGTAGAAGAC 59.900 54.545 17.99 3.67 43.05 3.01
4888 9561 2.291605 TGAGCTGTAGGCCTGTAGAAGA 60.292 50.000 17.99 0.00 43.05 2.87
4889 9562 2.103373 TGAGCTGTAGGCCTGTAGAAG 58.897 52.381 17.99 6.57 43.05 2.85
4890 9563 2.231716 TGAGCTGTAGGCCTGTAGAA 57.768 50.000 17.99 0.00 43.05 2.10
4891 9564 2.311463 GATGAGCTGTAGGCCTGTAGA 58.689 52.381 17.99 0.00 43.05 2.59
4929 9602 1.746615 CCAGCCACTCCCATGTTCG 60.747 63.158 0.00 0.00 0.00 3.95
4930 9603 0.038166 TTCCAGCCACTCCCATGTTC 59.962 55.000 0.00 0.00 0.00 3.18
4932 9605 1.595311 TATTCCAGCCACTCCCATGT 58.405 50.000 0.00 0.00 0.00 3.21
4950 9630 9.851686 ACTATTGTAAGATCTGCCAAAATGATA 57.148 29.630 10.39 0.37 0.00 2.15
4986 9666 8.564574 TGAAGTTCTGACAGCGTAAATTTTATT 58.435 29.630 4.17 0.00 0.00 1.40
4993 9673 6.371809 AAAATGAAGTTCTGACAGCGTAAA 57.628 33.333 4.17 0.00 0.00 2.01
5048 9776 2.808543 CACAAAGGACTAAGCTGTGGAC 59.191 50.000 0.00 0.00 34.97 4.02
5051 9779 3.733337 AGTCACAAAGGACTAAGCTGTG 58.267 45.455 0.00 0.00 45.95 3.66
5128 9856 3.000080 GCCGCAACGACAGAGAACG 62.000 63.158 0.00 0.00 0.00 3.95
5131 9859 3.303135 AGGCCGCAACGACAGAGA 61.303 61.111 0.00 0.00 0.00 3.10
5291 10027 2.470286 GGAAGACGCAGCGAAACG 59.530 61.111 24.65 0.00 0.00 3.60
5292 10028 2.861006 GGGAAGACGCAGCGAAAC 59.139 61.111 24.65 12.29 0.00 2.78
5293 10029 2.736995 CGGGAAGACGCAGCGAAA 60.737 61.111 24.65 0.00 0.00 3.46
5340 10076 2.851195 ACACACCGAAGATCTTGCTTT 58.149 42.857 14.00 0.00 0.00 3.51
5341 10077 2.550830 ACACACCGAAGATCTTGCTT 57.449 45.000 14.00 0.00 0.00 3.91
5342 10078 2.093973 CCTACACACCGAAGATCTTGCT 60.094 50.000 14.00 0.00 0.00 3.91
5343 10079 2.271800 CCTACACACCGAAGATCTTGC 58.728 52.381 14.00 3.86 0.00 4.01
5344 10080 2.496070 TCCCTACACACCGAAGATCTTG 59.504 50.000 14.00 1.05 0.00 3.02
5345 10081 2.816411 TCCCTACACACCGAAGATCTT 58.184 47.619 7.95 7.95 0.00 2.40
5346 10082 2.526888 TCCCTACACACCGAAGATCT 57.473 50.000 0.00 0.00 0.00 2.75
5347 10083 3.118738 ACAATCCCTACACACCGAAGATC 60.119 47.826 0.00 0.00 0.00 2.75
5348 10084 2.838202 ACAATCCCTACACACCGAAGAT 59.162 45.455 0.00 0.00 0.00 2.40
5349 10085 2.232941 GACAATCCCTACACACCGAAGA 59.767 50.000 0.00 0.00 0.00 2.87
5350 10086 2.233922 AGACAATCCCTACACACCGAAG 59.766 50.000 0.00 0.00 0.00 3.79
5351 10087 2.028476 CAGACAATCCCTACACACCGAA 60.028 50.000 0.00 0.00 0.00 4.30
5352 10088 1.548719 CAGACAATCCCTACACACCGA 59.451 52.381 0.00 0.00 0.00 4.69
5353 10089 1.548719 TCAGACAATCCCTACACACCG 59.451 52.381 0.00 0.00 0.00 4.94
5354 10090 3.914426 ATCAGACAATCCCTACACACC 57.086 47.619 0.00 0.00 0.00 4.16
5355 10091 5.452077 GGAGTATCAGACAATCCCTACACAC 60.452 48.000 0.00 0.00 36.25 3.82
5356 10092 4.649674 GGAGTATCAGACAATCCCTACACA 59.350 45.833 0.00 0.00 36.25 3.72
5357 10093 4.039366 GGGAGTATCAGACAATCCCTACAC 59.961 50.000 6.99 0.00 45.25 2.90
5358 10094 4.223953 GGGAGTATCAGACAATCCCTACA 58.776 47.826 6.99 0.00 45.25 2.74
5359 10095 4.875561 GGGAGTATCAGACAATCCCTAC 57.124 50.000 6.99 0.00 45.25 3.18
5363 10099 3.309296 TGGAGGGAGTATCAGACAATCC 58.691 50.000 0.00 0.00 36.25 3.01
5364 10100 5.559148 AATGGAGGGAGTATCAGACAATC 57.441 43.478 0.00 0.00 36.25 2.67
5365 10101 5.983333 AAATGGAGGGAGTATCAGACAAT 57.017 39.130 0.00 0.00 36.25 2.71
5366 10102 5.779241 AAAATGGAGGGAGTATCAGACAA 57.221 39.130 0.00 0.00 36.25 3.18
5367 10103 6.884472 TTAAAATGGAGGGAGTATCAGACA 57.116 37.500 0.00 0.00 36.25 3.41
5368 10104 8.753497 ATTTTAAAATGGAGGGAGTATCAGAC 57.247 34.615 12.62 0.00 36.25 3.51
5375 10111 9.990868 AACACTATATTTTAAAATGGAGGGAGT 57.009 29.630 22.97 16.01 0.00 3.85
5377 10113 8.691797 GCAACACTATATTTTAAAATGGAGGGA 58.308 33.333 22.97 7.07 0.00 4.20
5378 10114 7.647715 CGCAACACTATATTTTAAAATGGAGGG 59.352 37.037 21.19 19.32 0.00 4.30
5379 10115 8.188139 ACGCAACACTATATTTTAAAATGGAGG 58.812 33.333 21.19 13.61 0.00 4.30
5380 10116 9.221775 GACGCAACACTATATTTTAAAATGGAG 57.778 33.333 21.19 18.49 0.00 3.86
5381 10117 8.952278 AGACGCAACACTATATTTTAAAATGGA 58.048 29.630 21.19 9.38 0.00 3.41
5382 10118 9.567848 AAGACGCAACACTATATTTTAAAATGG 57.432 29.630 21.19 13.72 0.00 3.16
5386 10122 9.820229 CTGAAAGACGCAACACTATATTTTAAA 57.180 29.630 0.00 0.00 34.07 1.52
5387 10123 7.960738 GCTGAAAGACGCAACACTATATTTTAA 59.039 33.333 0.00 0.00 34.07 1.52
5388 10124 7.118535 TGCTGAAAGACGCAACACTATATTTTA 59.881 33.333 0.00 0.00 34.07 1.52
5389 10125 6.072728 TGCTGAAAGACGCAACACTATATTTT 60.073 34.615 0.00 0.00 34.07 1.82
5390 10126 5.411361 TGCTGAAAGACGCAACACTATATTT 59.589 36.000 0.00 0.00 34.07 1.40
5391 10127 4.935205 TGCTGAAAGACGCAACACTATATT 59.065 37.500 0.00 0.00 34.07 1.28
5392 10128 4.330074 GTGCTGAAAGACGCAACACTATAT 59.670 41.667 0.00 0.00 37.97 0.86
5393 10129 3.678072 GTGCTGAAAGACGCAACACTATA 59.322 43.478 0.00 0.00 37.97 1.31
5394 10130 2.480419 GTGCTGAAAGACGCAACACTAT 59.520 45.455 0.00 0.00 37.97 2.12
5395 10131 1.864711 GTGCTGAAAGACGCAACACTA 59.135 47.619 0.00 0.00 37.97 2.74
5396 10132 0.657840 GTGCTGAAAGACGCAACACT 59.342 50.000 0.00 0.00 37.97 3.55
5397 10133 0.657840 AGTGCTGAAAGACGCAACAC 59.342 50.000 0.00 0.00 37.97 3.32
5398 10134 0.937304 GAGTGCTGAAAGACGCAACA 59.063 50.000 0.00 0.00 37.97 3.33
5399 10135 0.111089 CGAGTGCTGAAAGACGCAAC 60.111 55.000 0.00 0.00 37.97 4.17
5400 10136 1.221466 CCGAGTGCTGAAAGACGCAA 61.221 55.000 0.00 0.00 37.97 4.85
5401 10137 1.664649 CCGAGTGCTGAAAGACGCA 60.665 57.895 0.00 0.00 34.07 5.24
5402 10138 3.016474 GCCGAGTGCTGAAAGACGC 62.016 63.158 0.00 0.00 34.07 5.19
5403 10139 2.720758 CGCCGAGTGCTGAAAGACG 61.721 63.158 0.00 0.00 38.05 4.18
5404 10140 2.383527 CCGCCGAGTGCTGAAAGAC 61.384 63.158 0.00 0.00 38.05 3.01
5405 10141 2.048222 CCGCCGAGTGCTGAAAGA 60.048 61.111 0.00 0.00 38.05 2.52
5406 10142 1.961277 AACCGCCGAGTGCTGAAAG 60.961 57.895 0.00 0.00 38.05 2.62
5407 10143 2.110213 AACCGCCGAGTGCTGAAA 59.890 55.556 0.00 0.00 38.05 2.69
5408 10144 2.664851 CAACCGCCGAGTGCTGAA 60.665 61.111 0.00 0.00 38.05 3.02
5409 10145 3.454587 AACAACCGCCGAGTGCTGA 62.455 57.895 0.00 0.00 38.05 4.26
5410 10146 2.972505 AACAACCGCCGAGTGCTG 60.973 61.111 0.00 0.00 38.05 4.41
5411 10147 2.972505 CAACAACCGCCGAGTGCT 60.973 61.111 0.00 0.00 38.05 4.40
5412 10148 4.683334 GCAACAACCGCCGAGTGC 62.683 66.667 0.00 0.00 0.00 4.40
5413 10149 4.025401 GGCAACAACCGCCGAGTG 62.025 66.667 0.00 0.00 40.35 3.51
5421 10157 2.200170 GATGCTCACGGGCAACAACC 62.200 60.000 0.00 0.00 45.68 3.77
5422 10158 1.210155 GATGCTCACGGGCAACAAC 59.790 57.895 0.00 0.00 45.68 3.32
5423 10159 0.821301 TTGATGCTCACGGGCAACAA 60.821 50.000 10.20 10.20 46.97 2.83
5424 10160 0.821301 TTTGATGCTCACGGGCAACA 60.821 50.000 0.00 0.00 45.68 3.33
5425 10161 0.313672 TTTTGATGCTCACGGGCAAC 59.686 50.000 0.00 0.00 45.68 4.17
5426 10162 0.597568 CTTTTGATGCTCACGGGCAA 59.402 50.000 0.00 0.00 45.68 4.52
5427 10163 1.865788 GCTTTTGATGCTCACGGGCA 61.866 55.000 0.00 0.00 46.63 5.36
5428 10164 1.153958 GCTTTTGATGCTCACGGGC 60.154 57.895 0.00 0.00 0.00 6.13
5429 10165 0.597568 TTGCTTTTGATGCTCACGGG 59.402 50.000 0.00 0.00 0.00 5.28
5430 10166 1.536766 TCTTGCTTTTGATGCTCACGG 59.463 47.619 0.00 0.00 0.00 4.94
5431 10167 2.975410 TCTTGCTTTTGATGCTCACG 57.025 45.000 0.00 0.00 0.00 4.35
5432 10168 4.438472 GGAGATCTTGCTTTTGATGCTCAC 60.438 45.833 0.00 0.00 0.00 3.51
5433 10169 3.693085 GGAGATCTTGCTTTTGATGCTCA 59.307 43.478 0.00 0.00 0.00 4.26
5434 10170 3.242673 CGGAGATCTTGCTTTTGATGCTC 60.243 47.826 0.00 0.00 0.00 4.26
5435 10171 2.681848 CGGAGATCTTGCTTTTGATGCT 59.318 45.455 0.00 0.00 0.00 3.79
5436 10172 2.223433 CCGGAGATCTTGCTTTTGATGC 60.223 50.000 0.00 0.00 0.00 3.91
5437 10173 3.012518 ACCGGAGATCTTGCTTTTGATG 58.987 45.455 9.46 0.00 0.00 3.07
5438 10174 3.012518 CACCGGAGATCTTGCTTTTGAT 58.987 45.455 9.46 0.00 0.00 2.57
5439 10175 2.426522 CACCGGAGATCTTGCTTTTGA 58.573 47.619 9.46 0.00 0.00 2.69
5440 10176 1.135575 GCACCGGAGATCTTGCTTTTG 60.136 52.381 9.46 0.00 0.00 2.44
5441 10177 1.168714 GCACCGGAGATCTTGCTTTT 58.831 50.000 9.46 0.00 0.00 2.27
5478 10231 8.398665 GCACACTATATTTTAAAACAGAGGGAG 58.601 37.037 9.96 3.39 0.00 4.30
5479 10232 7.338449 GGCACACTATATTTTAAAACAGAGGGA 59.662 37.037 9.96 0.00 0.00 4.20
5480 10233 7.416326 GGGCACACTATATTTTAAAACAGAGGG 60.416 40.741 1.62 1.62 0.00 4.30
5481 10234 7.480810 GGGCACACTATATTTTAAAACAGAGG 58.519 38.462 1.97 0.00 0.00 3.69
5482 10235 7.186804 CGGGCACACTATATTTTAAAACAGAG 58.813 38.462 1.97 0.56 0.00 3.35
5483 10236 6.403855 GCGGGCACACTATATTTTAAAACAGA 60.404 38.462 1.97 0.00 0.00 3.41
5484 10237 5.741982 GCGGGCACACTATATTTTAAAACAG 59.258 40.000 1.97 3.92 0.00 3.16
5485 10238 5.642686 GCGGGCACACTATATTTTAAAACA 58.357 37.500 1.97 0.00 0.00 2.83
5486 10239 4.731480 CGCGGGCACACTATATTTTAAAAC 59.269 41.667 1.97 0.00 0.00 2.43
5487 10240 4.395542 ACGCGGGCACACTATATTTTAAAA 59.604 37.500 12.47 2.51 0.00 1.52
5488 10241 3.940221 ACGCGGGCACACTATATTTTAAA 59.060 39.130 12.47 0.00 0.00 1.52
5489 10242 3.533547 ACGCGGGCACACTATATTTTAA 58.466 40.909 12.47 0.00 0.00 1.52
5490 10243 3.182341 ACGCGGGCACACTATATTTTA 57.818 42.857 12.47 0.00 0.00 1.52
5491 10244 2.032680 ACGCGGGCACACTATATTTT 57.967 45.000 12.47 0.00 0.00 1.82
5492 10245 2.032680 AACGCGGGCACACTATATTT 57.967 45.000 12.47 0.00 0.00 1.40
5493 10246 2.032680 AAACGCGGGCACACTATATT 57.967 45.000 12.47 0.00 0.00 1.28
5494 10247 2.032680 AAAACGCGGGCACACTATAT 57.967 45.000 12.47 0.00 0.00 0.86
5495 10248 1.733360 GAAAAACGCGGGCACACTATA 59.267 47.619 12.47 0.00 0.00 1.31
5496 10249 0.519961 GAAAAACGCGGGCACACTAT 59.480 50.000 12.47 0.00 0.00 2.12
5497 10250 1.833434 CGAAAAACGCGGGCACACTA 61.833 55.000 12.47 0.00 34.51 2.74
5498 10251 2.719354 GAAAAACGCGGGCACACT 59.281 55.556 12.47 0.00 0.00 3.55
5499 10252 2.724358 CGAAAAACGCGGGCACAC 60.724 61.111 12.47 0.00 34.51 3.82
5500 10253 2.887889 CTCGAAAAACGCGGGCACA 61.888 57.895 12.47 0.00 42.26 4.57
5501 10254 2.127383 CTCGAAAAACGCGGGCAC 60.127 61.111 12.47 0.00 42.26 5.01
5502 10255 3.350612 CCTCGAAAAACGCGGGCA 61.351 61.111 12.47 0.00 42.35 5.36
5506 10259 3.717350 AGATAAACCTCGAAAAACGCG 57.283 42.857 3.53 3.53 42.26 6.01
5507 10260 4.844522 GTCAAGATAAACCTCGAAAAACGC 59.155 41.667 0.00 0.00 42.26 4.84
5508 10261 5.049954 TGGTCAAGATAAACCTCGAAAAACG 60.050 40.000 0.00 0.00 36.47 3.60
5509 10262 6.308371 TGGTCAAGATAAACCTCGAAAAAC 57.692 37.500 0.00 0.00 36.47 2.43
5510 10263 8.624367 TTATGGTCAAGATAAACCTCGAAAAA 57.376 30.769 0.00 0.00 36.47 1.94
5511 10264 8.624367 TTTATGGTCAAGATAAACCTCGAAAA 57.376 30.769 0.00 0.00 36.47 2.29
5512 10265 8.801882 ATTTATGGTCAAGATAAACCTCGAAA 57.198 30.769 0.00 0.00 36.47 3.46
5513 10266 8.801882 AATTTATGGTCAAGATAAACCTCGAA 57.198 30.769 0.00 0.00 36.47 3.71
5514 10267 8.801882 AAATTTATGGTCAAGATAAACCTCGA 57.198 30.769 0.00 0.00 36.47 4.04
5524 10277 9.527157 TCTCATTGGTTAAATTTATGGTCAAGA 57.473 29.630 0.00 0.00 0.00 3.02
5525 10278 9.573133 GTCTCATTGGTTAAATTTATGGTCAAG 57.427 33.333 0.00 0.00 0.00 3.02
5526 10279 8.527810 GGTCTCATTGGTTAAATTTATGGTCAA 58.472 33.333 0.00 2.87 0.00 3.18
5527 10280 7.148154 CGGTCTCATTGGTTAAATTTATGGTCA 60.148 37.037 0.00 0.00 0.00 4.02
5528 10281 7.066525 TCGGTCTCATTGGTTAAATTTATGGTC 59.933 37.037 0.00 0.00 0.00 4.02
5529 10282 6.887545 TCGGTCTCATTGGTTAAATTTATGGT 59.112 34.615 0.00 0.00 0.00 3.55
5530 10283 7.067008 AGTCGGTCTCATTGGTTAAATTTATGG 59.933 37.037 0.00 0.00 0.00 2.74
5531 10284 7.910162 CAGTCGGTCTCATTGGTTAAATTTATG 59.090 37.037 0.00 0.00 0.00 1.90
5532 10285 7.415206 GCAGTCGGTCTCATTGGTTAAATTTAT 60.415 37.037 0.00 0.00 0.00 1.40
5533 10286 6.128117 GCAGTCGGTCTCATTGGTTAAATTTA 60.128 38.462 0.00 0.00 0.00 1.40
5534 10287 5.335661 GCAGTCGGTCTCATTGGTTAAATTT 60.336 40.000 0.00 0.00 0.00 1.82
5535 10288 4.156008 GCAGTCGGTCTCATTGGTTAAATT 59.844 41.667 0.00 0.00 0.00 1.82
5536 10289 3.689649 GCAGTCGGTCTCATTGGTTAAAT 59.310 43.478 0.00 0.00 0.00 1.40
5537 10290 3.071479 GCAGTCGGTCTCATTGGTTAAA 58.929 45.455 0.00 0.00 0.00 1.52
5538 10291 2.695359 GCAGTCGGTCTCATTGGTTAA 58.305 47.619 0.00 0.00 0.00 2.01
5539 10292 1.403647 CGCAGTCGGTCTCATTGGTTA 60.404 52.381 0.00 0.00 0.00 2.85
5540 10293 0.670546 CGCAGTCGGTCTCATTGGTT 60.671 55.000 0.00 0.00 0.00 3.67
5541 10294 1.079819 CGCAGTCGGTCTCATTGGT 60.080 57.895 0.00 0.00 0.00 3.67
5542 10295 1.078759 GTCGCAGTCGGTCTCATTGG 61.079 60.000 0.00 0.00 36.13 3.16
5543 10296 1.406219 CGTCGCAGTCGGTCTCATTG 61.406 60.000 0.00 0.00 35.06 2.82
5544 10297 1.154016 CGTCGCAGTCGGTCTCATT 60.154 57.895 0.00 0.00 35.06 2.57
5545 10298 2.485582 CGTCGCAGTCGGTCTCAT 59.514 61.111 0.00 0.00 35.06 2.90
5552 10305 4.717629 TTGCTCCCGTCGCAGTCG 62.718 66.667 0.00 0.00 38.80 4.18
5553 10306 1.503818 TTTTTGCTCCCGTCGCAGTC 61.504 55.000 0.00 0.00 38.80 3.51
5554 10307 0.889186 ATTTTTGCTCCCGTCGCAGT 60.889 50.000 0.00 0.00 38.80 4.40
5555 10308 0.240945 AATTTTTGCTCCCGTCGCAG 59.759 50.000 0.00 0.00 38.80 5.18
5556 10309 1.524848 TAATTTTTGCTCCCGTCGCA 58.475 45.000 0.00 0.00 35.22 5.10
5557 10310 2.844122 ATAATTTTTGCTCCCGTCGC 57.156 45.000 0.00 0.00 0.00 5.19
5558 10311 7.060633 GCAATTATATAATTTTTGCTCCCGTCG 59.939 37.037 16.47 4.14 33.88 5.12
5559 10312 7.865385 TGCAATTATATAATTTTTGCTCCCGTC 59.135 33.333 23.11 7.95 33.88 4.79
5560 10313 7.721402 TGCAATTATATAATTTTTGCTCCCGT 58.279 30.769 23.11 0.00 33.88 5.28
5561 10314 8.586570 TTGCAATTATATAATTTTTGCTCCCG 57.413 30.769 23.11 10.78 33.88 5.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.