Multiple sequence alignment - TraesCS4D01G103500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G103500 chr4D 100.000 2506 0 0 956 3461 82288391 82290896 0.000000e+00 4628
1 TraesCS4D01G103500 chr4D 100.000 745 0 0 1 745 82287436 82288180 0.000000e+00 1376
2 TraesCS4D01G103500 chr4B 96.706 2520 59 6 956 3461 116209459 116211968 0.000000e+00 4172
3 TraesCS4D01G103500 chr4B 91.797 256 20 1 1 255 116208960 116209215 4.250000e-94 355
4 TraesCS4D01G103500 chr4B 92.432 185 12 2 547 730 116209241 116209424 2.650000e-66 263
5 TraesCS4D01G103500 chr4A 96.548 2520 60 10 957 3461 492527445 492529952 0.000000e+00 4146
6 TraesCS4D01G103500 chr4A 90.751 746 44 7 1 745 492526710 492527431 0.000000e+00 972
7 TraesCS4D01G103500 chr3D 90.288 278 25 1 271 546 24569709 24569432 2.540000e-96 363
8 TraesCS4D01G103500 chrUn 89.568 278 27 1 271 546 136395339 136395062 5.500000e-93 351
9 TraesCS4D01G103500 chr7D 89.568 278 27 1 271 546 475155396 475155119 5.500000e-93 351
10 TraesCS4D01G103500 chr7A 89.568 278 27 1 271 546 10359752 10359475 5.500000e-93 351
11 TraesCS4D01G103500 chr6D 89.568 278 27 1 271 546 454064141 454064418 5.500000e-93 351
12 TraesCS4D01G103500 chr3B 89.568 278 27 2 271 546 534159663 534159386 5.500000e-93 351
13 TraesCS4D01G103500 chr5B 89.209 278 28 1 271 546 710235625 710235902 2.560000e-91 346
14 TraesCS4D01G103500 chr6B 88.929 280 27 4 271 546 688620823 688621102 3.310000e-90 342


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G103500 chr4D 82287436 82290896 3460 False 3002.000000 4628 100.0000 1 3461 2 chr4D.!!$F1 3460
1 TraesCS4D01G103500 chr4B 116208960 116211968 3008 False 1596.666667 4172 93.6450 1 3461 3 chr4B.!!$F1 3460
2 TraesCS4D01G103500 chr4A 492526710 492529952 3242 False 2559.000000 4146 93.6495 1 3461 2 chr4A.!!$F1 3460

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
390 401 0.038251 CGACTACAAGCACTGGAGCA 60.038 55.0 0.0 0.0 40.05 4.26 F
524 535 0.318614 AACAACCGCCGCAAATGAAG 60.319 50.0 0.0 0.0 0.00 3.02 F
991 1011 0.602905 ACTGTACACCTCAAAGCGGC 60.603 55.0 0.0 0.0 0.00 6.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1452 1472 0.617413 CATTGACCAGGAGACCAGCT 59.383 55.000 0.00 0.0 0.00 4.24 R
1911 1931 1.654105 GTGATACAGTTCGGCTTCACG 59.346 52.381 0.00 0.0 0.00 4.35 R
2757 2777 2.902486 TGGAAGTCACTTCAGAGCAGAT 59.098 45.455 19.37 0.0 41.77 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
115 116 0.039618 GCTCCCCTCCCATTTTCACA 59.960 55.000 0.00 0.00 0.00 3.58
146 147 3.492656 CGGTGTTGTCTGAGGAGAAAAGA 60.493 47.826 0.00 0.00 0.00 2.52
213 214 6.696411 CCATTTGGTTATTTCAAGGCTTGTA 58.304 36.000 25.39 14.74 0.00 2.41
257 267 9.931210 AAACACTCGTAGAAGTAAGAAAAATTG 57.069 29.630 0.00 0.00 34.09 2.32
266 276 7.238710 AGAAGTAAGAAAAATTGCCCTCCTAA 58.761 34.615 0.00 0.00 0.00 2.69
386 397 1.344942 GCGACGACTACAAGCACTGG 61.345 60.000 0.00 0.00 0.00 4.00
390 401 0.038251 CGACTACAAGCACTGGAGCA 60.038 55.000 0.00 0.00 40.05 4.26
392 403 2.072298 GACTACAAGCACTGGAGCAAG 58.928 52.381 0.00 0.00 40.05 4.01
393 404 0.801251 CTACAAGCACTGGAGCAAGC 59.199 55.000 0.00 0.00 36.85 4.01
436 447 3.998156 CTCCCTCGTCGGAGTCAA 58.002 61.111 11.10 0.00 43.94 3.18
437 448 1.803943 CTCCCTCGTCGGAGTCAAG 59.196 63.158 11.10 0.00 43.94 3.02
442 453 0.784778 CTCGTCGGAGTCAAGCAAAC 59.215 55.000 0.00 0.00 35.48 2.93
457 468 7.445402 AGTCAAGCAAACATTGTTGTAGTAGAT 59.555 33.333 2.13 0.00 34.06 1.98
463 474 7.274904 GCAAACATTGTTGTAGTAGATAGTCGA 59.725 37.037 2.13 0.00 34.06 4.20
464 475 9.135843 CAAACATTGTTGTAGTAGATAGTCGAA 57.864 33.333 2.13 0.00 34.06 3.71
470 481 8.102800 TGTTGTAGTAGATAGTCGAAAAGTCA 57.897 34.615 0.00 0.00 0.00 3.41
475 486 6.487960 AGTAGATAGTCGAAAAGTCATCGTG 58.512 40.000 0.00 0.00 40.99 4.35
476 487 4.106197 AGATAGTCGAAAAGTCATCGTGC 58.894 43.478 0.00 0.00 40.99 5.34
477 488 2.440539 AGTCGAAAAGTCATCGTGCT 57.559 45.000 0.00 0.00 40.99 4.40
478 489 3.570926 AGTCGAAAAGTCATCGTGCTA 57.429 42.857 0.00 0.00 40.99 3.49
479 490 3.909430 AGTCGAAAAGTCATCGTGCTAA 58.091 40.909 0.00 0.00 40.99 3.09
480 491 3.921021 AGTCGAAAAGTCATCGTGCTAAG 59.079 43.478 0.00 0.00 40.99 2.18
481 492 3.060895 GTCGAAAAGTCATCGTGCTAAGG 59.939 47.826 0.00 0.00 40.99 2.69
482 493 2.222819 CGAAAAGTCATCGTGCTAAGGC 60.223 50.000 0.00 0.00 35.64 4.35
496 507 1.276140 TAAGGCCCCATAACCAGCGT 61.276 55.000 0.00 0.00 0.00 5.07
500 511 1.227438 CCCCATAACCAGCGTACCG 60.227 63.158 0.00 0.00 0.00 4.02
501 512 1.678598 CCCCATAACCAGCGTACCGA 61.679 60.000 0.00 0.00 0.00 4.69
506 517 2.522836 TAACCAGCGTACCGAAACAA 57.477 45.000 0.00 0.00 0.00 2.83
517 528 2.409651 GAAACAACAACCGCCGCA 59.590 55.556 0.00 0.00 0.00 5.69
518 529 1.226717 GAAACAACAACCGCCGCAA 60.227 52.632 0.00 0.00 0.00 4.85
524 535 0.318614 AACAACCGCCGCAAATGAAG 60.319 50.000 0.00 0.00 0.00 3.02
531 542 1.999735 CGCCGCAAATGAAGAGAAGTA 59.000 47.619 0.00 0.00 0.00 2.24
532 543 2.609459 CGCCGCAAATGAAGAGAAGTAT 59.391 45.455 0.00 0.00 0.00 2.12
533 544 3.802139 CGCCGCAAATGAAGAGAAGTATA 59.198 43.478 0.00 0.00 0.00 1.47
534 545 4.084849 CGCCGCAAATGAAGAGAAGTATAG 60.085 45.833 0.00 0.00 0.00 1.31
575 586 2.684881 CCTGGAGGCATTATGTGTTGAC 59.315 50.000 0.00 0.00 0.00 3.18
586 597 1.424403 TGTGTTGACGCAATCGGTAG 58.576 50.000 0.00 0.00 40.69 3.18
639 652 8.676401 ACTTTAGTTAGTAAAAACGCCTGAAAA 58.324 29.630 0.00 0.00 34.46 2.29
660 673 6.704512 AAATTGCACATAAATCGGTGAAAC 57.295 33.333 0.00 0.00 35.47 2.78
733 753 2.965783 GCCTGCTCGTGAGTGAGA 59.034 61.111 0.00 0.00 38.28 3.27
991 1011 0.602905 ACTGTACACCTCAAAGCGGC 60.603 55.000 0.00 0.00 0.00 6.53
992 1012 1.626654 CTGTACACCTCAAAGCGGCG 61.627 60.000 0.51 0.51 0.00 6.46
1001 1021 4.740822 AAAGCGGCGGCCTCCAAT 62.741 61.111 18.34 0.00 41.24 3.16
1452 1472 3.249799 CACTTCTTGACATGTACGCCAAA 59.750 43.478 0.00 0.00 0.00 3.28
1609 1629 1.003839 GTGGAGGCGGTGAACATGA 60.004 57.895 0.00 0.00 0.00 3.07
1873 1893 2.299013 GGTGTCCATGGAAAGGGAAAAC 59.701 50.000 18.20 1.27 34.34 2.43
2092 2112 1.743958 CTGGAGCCATTGAAGAAGCTG 59.256 52.381 0.00 0.00 35.23 4.24
2301 2321 3.355378 TGATGGTGTTGCAGGATTAAGG 58.645 45.455 0.00 0.00 0.00 2.69
2391 2411 1.478105 CATGCCTTTTACCAAGGGAGC 59.522 52.381 2.84 0.00 41.13 4.70
2413 2433 4.336713 GCATCCCAAGTTATTTGAGGAGAC 59.663 45.833 4.65 0.00 38.60 3.36
2414 2434 4.202245 TCCCAAGTTATTTGAGGAGACG 57.798 45.455 0.00 0.00 39.21 4.18
2539 2559 7.116075 TGGTATGGTTAAGTCATGTACTACC 57.884 40.000 0.00 2.06 37.50 3.18
2587 2607 4.034285 AGCAGTAACCAGCCTTAATTGT 57.966 40.909 0.00 0.00 0.00 2.71
2595 2615 6.469782 AACCAGCCTTAATTGTTATCATGG 57.530 37.500 0.00 0.00 0.00 3.66
2604 2624 8.137437 CCTTAATTGTTATCATGGGTTCACATC 58.863 37.037 0.00 0.00 0.00 3.06
2623 2643 8.746922 TCACATCAGCAATTCTTTTAATCAAC 57.253 30.769 0.00 0.00 0.00 3.18
2627 2647 8.914654 CATCAGCAATTCTTTTAATCAACGAAA 58.085 29.630 0.00 0.00 0.00 3.46
2714 2734 1.728971 CTGTGAAGATGAAGCGGTGAC 59.271 52.381 0.00 0.00 0.00 3.67
2718 2738 0.976641 AAGATGAAGCGGTGACTGGA 59.023 50.000 0.00 0.00 0.00 3.86
2757 2777 4.077108 TCTTCAGTTTGAGGCTACGACTA 58.923 43.478 0.00 0.00 0.00 2.59
2905 2937 0.968405 GCTGGGATGCAACTGGAAAA 59.032 50.000 0.00 0.00 0.00 2.29
3038 3071 2.830923 AGTCTGCACTGAATCTACTGCT 59.169 45.455 0.00 0.00 0.00 4.24
3166 3199 3.848353 AGTGACCAACTGGCCATTT 57.152 47.368 5.51 3.40 37.88 2.32
3167 3200 1.331214 AGTGACCAACTGGCCATTTG 58.669 50.000 24.98 24.98 37.88 2.32
3168 3201 0.319813 GTGACCAACTGGCCATTTGC 60.320 55.000 26.17 15.98 39.32 3.68
3183 3216 4.943093 GCCATTTGCCCATTTTAATCAAGT 59.057 37.500 0.00 0.00 0.00 3.16
3210 3243 6.443849 TGTAACCTCCAGAAAGAGATTGGTAT 59.556 38.462 0.00 0.00 35.82 2.73
3216 3249 7.147655 CCTCCAGAAAGAGATTGGTATAGTCAA 60.148 40.741 0.00 0.00 35.82 3.18
3226 3259 8.498054 AGATTGGTATAGTCAACATGAGTTTG 57.502 34.615 0.00 0.00 35.28 2.93
3248 3281 3.098377 TGTGCCTGGTTGCATGATTATT 58.902 40.909 0.00 0.00 44.30 1.40
3278 3312 8.540388 AGATTTGTAAGCTAATCAGTGGTTCTA 58.460 33.333 9.13 0.00 38.63 2.10
3279 3313 9.162764 GATTTGTAAGCTAATCAGTGGTTCTAA 57.837 33.333 0.00 0.00 37.01 2.10
3333 3367 5.586243 TCAGTCTTCTGGACAGTTTCTTTTG 59.414 40.000 0.00 0.00 46.72 2.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
115 116 1.066918 GACAACACCGTCGGTCAGT 59.933 57.895 15.67 13.14 31.02 3.41
146 147 1.747444 TTCTTTCCCCAGCTCCTCTT 58.253 50.000 0.00 0.00 0.00 2.85
249 251 7.801716 AAAAGTTTTAGGAGGGCAATTTTTC 57.198 32.000 0.00 0.00 0.00 2.29
290 301 6.045318 ACCTTGACAGTTGATGAATAGATCG 58.955 40.000 0.00 0.00 0.00 3.69
292 303 8.083828 ACTACCTTGACAGTTGATGAATAGAT 57.916 34.615 0.00 0.00 0.00 1.98
364 375 1.135746 AGTGCTTGTAGTCGTCGCTAC 60.136 52.381 15.52 15.52 41.13 3.58
408 419 3.917760 GAGGGAGGGGCGATGACG 61.918 72.222 0.00 0.00 42.93 4.35
421 432 2.154798 TTGCTTGACTCCGACGAGGG 62.155 60.000 0.00 0.00 40.77 4.30
423 434 0.784778 GTTTGCTTGACTCCGACGAG 59.215 55.000 0.00 0.00 42.32 4.18
433 444 7.744087 ATCTACTACAACAATGTTTGCTTGA 57.256 32.000 0.00 0.00 41.05 3.02
435 446 8.848474 ACTATCTACTACAACAATGTTTGCTT 57.152 30.769 0.00 0.00 41.05 3.91
436 447 7.275779 CGACTATCTACTACAACAATGTTTGCT 59.724 37.037 0.00 0.00 41.05 3.91
437 448 7.274904 TCGACTATCTACTACAACAATGTTTGC 59.725 37.037 0.00 0.00 41.05 3.68
442 453 9.355215 ACTTTTCGACTATCTACTACAACAATG 57.645 33.333 0.00 0.00 0.00 2.82
457 468 3.570926 AGCACGATGACTTTTCGACTA 57.429 42.857 0.00 0.00 39.81 2.59
463 474 2.084546 GGCCTTAGCACGATGACTTTT 58.915 47.619 0.00 0.00 42.56 2.27
464 475 1.679032 GGGCCTTAGCACGATGACTTT 60.679 52.381 0.84 0.00 42.56 2.66
470 481 1.136828 TTATGGGGCCTTAGCACGAT 58.863 50.000 0.84 0.00 46.55 3.73
475 486 0.823769 GCTGGTTATGGGGCCTTAGC 60.824 60.000 0.84 0.00 38.76 3.09
476 487 0.535102 CGCTGGTTATGGGGCCTTAG 60.535 60.000 0.84 0.00 0.00 2.18
477 488 1.276140 ACGCTGGTTATGGGGCCTTA 61.276 55.000 0.84 0.00 0.00 2.69
478 489 1.276140 TACGCTGGTTATGGGGCCTT 61.276 55.000 0.84 0.00 0.00 4.35
479 490 1.691337 TACGCTGGTTATGGGGCCT 60.691 57.895 0.84 0.00 0.00 5.19
480 491 1.525306 GTACGCTGGTTATGGGGCC 60.525 63.158 0.00 0.00 0.00 5.80
481 492 1.525306 GGTACGCTGGTTATGGGGC 60.525 63.158 0.00 0.00 0.00 5.80
482 493 4.870190 GGTACGCTGGTTATGGGG 57.130 61.111 0.00 0.00 0.00 4.96
496 507 1.497223 CGGCGGTTGTTGTTTCGGTA 61.497 55.000 0.00 0.00 0.00 4.02
500 511 0.802607 TTTGCGGCGGTTGTTGTTTC 60.803 50.000 9.78 0.00 0.00 2.78
501 512 0.179097 ATTTGCGGCGGTTGTTGTTT 60.179 45.000 9.78 0.00 0.00 2.83
506 517 1.169661 TCTTCATTTGCGGCGGTTGT 61.170 50.000 9.78 0.00 0.00 3.32
517 528 9.757227 CCTTTCGATCTATACTTCTCTTCATTT 57.243 33.333 0.00 0.00 0.00 2.32
518 529 9.137459 TCCTTTCGATCTATACTTCTCTTCATT 57.863 33.333 0.00 0.00 0.00 2.57
524 535 7.455641 TCCATCCTTTCGATCTATACTTCTC 57.544 40.000 0.00 0.00 0.00 2.87
531 542 5.187967 GGGTACATCCATCCTTTCGATCTAT 59.812 44.000 0.00 0.00 38.11 1.98
532 543 4.527038 GGGTACATCCATCCTTTCGATCTA 59.473 45.833 0.00 0.00 38.11 1.98
533 544 3.325135 GGGTACATCCATCCTTTCGATCT 59.675 47.826 0.00 0.00 38.11 2.75
534 545 3.325135 AGGGTACATCCATCCTTTCGATC 59.675 47.826 0.00 0.00 38.11 3.69
575 586 1.095228 ATTGGCCACTACCGATTGCG 61.095 55.000 3.88 0.00 28.53 4.85
639 652 4.381505 GGGTTTCACCGATTTATGTGCAAT 60.382 41.667 0.00 0.00 39.83 3.56
962 982 2.870411 GAGGTGTACAGTGCTTTTTCGT 59.130 45.455 0.00 0.00 0.00 3.85
967 987 2.618709 GCTTTGAGGTGTACAGTGCTTT 59.381 45.455 0.00 0.00 0.00 3.51
994 1014 3.282157 CGGCGGCATCATTGGAGG 61.282 66.667 10.53 0.00 0.00 4.30
998 1018 2.186160 TTAGGCGGCGGCATCATTG 61.186 57.895 34.87 0.00 42.47 2.82
999 1019 2.186826 GTTAGGCGGCGGCATCATT 61.187 57.895 34.87 16.70 42.47 2.57
1452 1472 0.617413 CATTGACCAGGAGACCAGCT 59.383 55.000 0.00 0.00 0.00 4.24
1741 1761 5.874810 ACTTTGCATACATGTCTATCAACGT 59.125 36.000 0.00 4.22 0.00 3.99
1749 1769 1.739466 CCGCACTTTGCATACATGTCT 59.261 47.619 0.00 0.00 45.36 3.41
1911 1931 1.654105 GTGATACAGTTCGGCTTCACG 59.346 52.381 0.00 0.00 0.00 4.35
2092 2112 3.498777 GGCATCTTCTTTATAAGCCCGAC 59.501 47.826 0.00 0.00 34.71 4.79
2301 2321 3.017442 GCCAAGTTCCCTCATCCTTAAC 58.983 50.000 0.00 0.00 0.00 2.01
2391 2411 4.572389 CGTCTCCTCAAATAACTTGGGATG 59.428 45.833 0.00 0.00 37.78 3.51
2397 2417 7.745620 AAACATTCGTCTCCTCAAATAACTT 57.254 32.000 0.00 0.00 0.00 2.66
2413 2433 6.551736 ACCGATCTAAAATCCAAAACATTCG 58.448 36.000 0.00 0.00 0.00 3.34
2414 2434 9.285770 GTAACCGATCTAAAATCCAAAACATTC 57.714 33.333 0.00 0.00 0.00 2.67
2539 2559 3.310774 CCTCAAACCAATATCTGACTGCG 59.689 47.826 0.00 0.00 0.00 5.18
2587 2607 4.233632 TGCTGATGTGAACCCATGATAA 57.766 40.909 0.00 0.00 0.00 1.75
2595 2615 7.814107 TGATTAAAAGAATTGCTGATGTGAACC 59.186 33.333 0.00 0.00 0.00 3.62
2604 2624 8.506140 TCTTTCGTTGATTAAAAGAATTGCTG 57.494 30.769 0.00 0.00 36.37 4.41
2623 2643 4.994852 TCCACATTTACCAGAACTCTTTCG 59.005 41.667 0.00 0.00 36.78 3.46
2627 2647 3.864921 GCGTCCACATTTACCAGAACTCT 60.865 47.826 0.00 0.00 0.00 3.24
2714 2734 3.210232 ACCAGCATCATTCTCATCCAG 57.790 47.619 0.00 0.00 0.00 3.86
2718 2738 4.851843 TGAAGAACCAGCATCATTCTCAT 58.148 39.130 0.00 0.00 31.44 2.90
2757 2777 2.902486 TGGAAGTCACTTCAGAGCAGAT 59.098 45.455 19.37 0.00 41.77 2.90
2905 2937 6.233434 TGACTGAAGAACATAATGCTCACTT 58.767 36.000 0.00 0.00 0.00 3.16
3038 3071 6.435591 TGCCATGAAATTTTGTATCACTGGTA 59.564 34.615 0.00 0.00 30.82 3.25
3161 3194 6.314400 CAGACTTGATTAAAATGGGCAAATGG 59.686 38.462 0.00 0.00 0.00 3.16
3162 3195 6.875195 ACAGACTTGATTAAAATGGGCAAATG 59.125 34.615 0.00 0.00 0.00 2.32
3163 3196 7.008021 ACAGACTTGATTAAAATGGGCAAAT 57.992 32.000 0.00 0.00 0.00 2.32
3164 3197 6.418057 ACAGACTTGATTAAAATGGGCAAA 57.582 33.333 0.00 0.00 0.00 3.68
3165 3198 7.375053 GTTACAGACTTGATTAAAATGGGCAA 58.625 34.615 0.00 0.00 0.00 4.52
3166 3199 6.071616 GGTTACAGACTTGATTAAAATGGGCA 60.072 38.462 0.00 0.00 0.00 5.36
3167 3200 6.152831 AGGTTACAGACTTGATTAAAATGGGC 59.847 38.462 0.00 0.00 0.00 5.36
3168 3201 7.148069 GGAGGTTACAGACTTGATTAAAATGGG 60.148 40.741 0.00 0.00 0.00 4.00
3183 3216 5.046304 CCAATCTCTTTCTGGAGGTTACAGA 60.046 44.000 0.00 0.00 42.81 3.41
3210 3243 3.563808 GGCACACAAACTCATGTTGACTA 59.436 43.478 1.85 0.00 36.39 2.59
3216 3249 1.321474 CCAGGCACACAAACTCATGT 58.679 50.000 0.00 0.00 0.00 3.21
3248 3281 8.486210 ACCACTGATTAGCTTACAAATCTGATA 58.514 33.333 16.35 0.00 35.68 2.15
3278 3312 9.700831 AATTACAGATAAAGGGTCTAAGCAATT 57.299 29.630 0.00 0.00 0.00 2.32
3324 3358 5.620879 GCCCATCATCAGAGACAAAAGAAAC 60.621 44.000 0.00 0.00 0.00 2.78
3333 3367 6.263842 TCATTTATTTGCCCATCATCAGAGAC 59.736 38.462 0.00 0.00 0.00 3.36
3433 3467 8.033626 ACTTTACAAAGTATACAGCAGTACCTC 58.966 37.037 5.50 0.00 46.75 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.