Multiple sequence alignment - TraesCS4D01G103300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G103300 chr4D 100.000 4462 0 0 1 4462 81988448 81983987 0.000000e+00 8240.0
1 TraesCS4D01G103300 chr4D 80.549 874 114 39 2633 3478 81972568 81971723 4.900000e-174 621.0
2 TraesCS4D01G103300 chr4D 84.660 515 65 9 2060 2570 81973252 81972748 6.660000e-138 501.0
3 TraesCS4D01G103300 chr4D 77.112 651 96 39 863 1494 81974419 81973803 1.200000e-85 327.0
4 TraesCS4D01G103300 chr4D 89.840 187 17 2 147 331 416867660 416867846 5.770000e-59 239.0
5 TraesCS4D01G103300 chr4D 93.478 92 6 0 1846 1937 102387000 102387091 2.160000e-28 137.0
6 TraesCS4D01G103300 chr4D 98.000 50 1 0 1497 1546 121077002 121076953 2.210000e-13 87.9
7 TraesCS4D01G103300 chr4D 96.154 52 2 0 1487 1538 1405937 1405886 7.950000e-13 86.1
8 TraesCS4D01G103300 chr4A 94.044 1830 99 5 1933 3753 492031739 492029911 0.000000e+00 2767.0
9 TraesCS4D01G103300 chr4A 90.550 1037 59 22 480 1494 492033054 492032035 0.000000e+00 1336.0
10 TraesCS4D01G103300 chr4A 79.754 1057 148 41 2060 3101 491916538 491915533 0.000000e+00 706.0
11 TraesCS4D01G103300 chr4A 92.063 315 21 3 3153 3464 491915424 491915111 1.470000e-119 440.0
12 TraesCS4D01G103300 chr4A 81.865 386 48 17 1123 1494 491917501 491917124 5.610000e-79 305.0
13 TraesCS4D01G103300 chr4A 77.957 186 23 10 863 1041 491917749 491917575 2.840000e-17 100.0
14 TraesCS4D01G103300 chr4A 96.078 51 1 1 1497 1546 643061157 643061207 1.030000e-11 82.4
15 TraesCS4D01G103300 chr4A 92.157 51 4 0 414 464 100122312 100122262 6.190000e-09 73.1
16 TraesCS4D01G103300 chr4B 95.879 1650 63 3 1930 3574 115880897 115879248 0.000000e+00 2665.0
17 TraesCS4D01G103300 chr4B 89.826 1032 62 21 484 1494 115882183 115881174 0.000000e+00 1284.0
18 TraesCS4D01G103300 chr4B 80.249 1443 204 46 2060 3464 115846969 115845570 0.000000e+00 1011.0
19 TraesCS4D01G103300 chr4B 89.449 635 59 3 3669 4295 115878780 115878146 0.000000e+00 795.0
20 TraesCS4D01G103300 chr4B 85.714 658 89 5 3809 4462 291896594 291895938 0.000000e+00 689.0
21 TraesCS4D01G103300 chr4B 98.140 215 4 0 1636 1850 115881108 115880894 4.210000e-100 375.0
22 TraesCS4D01G103300 chr4B 78.744 621 78 32 861 1463 115848126 115847542 2.540000e-97 366.0
23 TraesCS4D01G103300 chr4B 91.111 180 14 2 157 335 507362127 507361949 4.460000e-60 243.0
24 TraesCS4D01G103300 chr4B 97.826 46 1 0 1492 1537 34029137 34029092 3.700000e-11 80.5
25 TraesCS4D01G103300 chr4B 100.000 42 0 0 3580 3621 115879271 115879230 1.330000e-10 78.7
26 TraesCS4D01G103300 chr4B 96.875 32 1 0 1463 1494 115881104 115881135 2.000000e-03 54.7
27 TraesCS4D01G103300 chr1D 80.067 1495 197 67 2032 3465 452626866 452625412 0.000000e+00 1016.0
28 TraesCS4D01G103300 chr1D 82.870 648 102 7 3810 4454 357331768 357331127 1.390000e-159 573.0
29 TraesCS4D01G103300 chr5B 78.147 1263 202 48 2253 3478 608202832 608204057 0.000000e+00 736.0
30 TraesCS4D01G103300 chr5B 81.534 704 101 13 2057 2750 608343387 608344071 1.810000e-153 553.0
31 TraesCS4D01G103300 chr5B 89.423 312 23 6 3158 3465 608344238 608344543 7.000000e-103 385.0
32 TraesCS4D01G103300 chr5B 81.769 373 51 15 1075 1442 608088725 608089085 3.370000e-76 296.0
33 TraesCS4D01G103300 chr5B 79.087 416 48 23 883 1276 608199696 608200094 2.660000e-62 250.0
34 TraesCS4D01G103300 chr5B 80.826 339 47 13 1109 1442 608340785 608341110 2.660000e-62 250.0
35 TraesCS4D01G103300 chr5B 92.045 176 14 0 159 334 427931199 427931374 9.580000e-62 248.0
36 TraesCS4D01G103300 chr5B 95.349 43 2 0 1000 1042 341062698 341062740 8.010000e-08 69.4
37 TraesCS4D01G103300 chr1A 84.060 734 91 18 2032 2745 547393273 547392546 0.000000e+00 684.0
38 TraesCS4D01G103300 chr1A 82.490 731 100 20 2032 2745 547413983 547413264 2.280000e-172 616.0
39 TraesCS4D01G103300 chr1A 91.319 288 25 0 3178 3465 547392116 547391829 1.160000e-105 394.0
40 TraesCS4D01G103300 chr1A 98.649 148 1 1 1133 1280 547417286 547417140 1.230000e-65 261.0
41 TraesCS4D01G103300 chr1A 98.611 144 2 0 1133 1276 547395709 547395566 5.730000e-64 255.0
42 TraesCS4D01G103300 chr1A 90.654 107 10 0 1345 1451 541136963 541137069 4.650000e-30 143.0
43 TraesCS4D01G103300 chr2A 85.116 645 94 2 3820 4462 764823848 764823204 0.000000e+00 658.0
44 TraesCS4D01G103300 chr2A 100.000 28 0 0 423 450 701755789 701755816 8.000000e-03 52.8
45 TraesCS4D01G103300 chr6B 84.414 648 93 8 3820 4462 224220545 224221189 8.150000e-177 630.0
46 TraesCS4D01G103300 chr2B 84.098 654 99 5 3811 4462 59680339 59680989 1.050000e-175 627.0
47 TraesCS4D01G103300 chr2B 95.455 66 3 0 1425 1490 351183383 351183448 6.100000e-19 106.0
48 TraesCS4D01G103300 chr2B 97.872 47 1 0 1346 1392 351183339 351183385 1.030000e-11 82.4
49 TraesCS4D01G103300 chr2B 94.340 53 3 0 1486 1538 484107479 484107531 1.030000e-11 82.4
50 TraesCS4D01G103300 chr2B 92.982 57 1 3 1484 1538 378436745 378436690 3.700000e-11 80.5
51 TraesCS4D01G103300 chr1B 82.377 732 88 26 2032 2745 622708112 622707404 2.300000e-167 599.0
52 TraesCS4D01G103300 chr1B 79.142 676 93 32 2834 3478 622707278 622706620 1.480000e-114 424.0
53 TraesCS4D01G103300 chr1B 91.477 176 15 0 158 333 427603111 427602936 4.460000e-60 243.0
54 TraesCS4D01G103300 chr3D 83.542 638 98 5 3820 4455 611220816 611220184 1.380000e-164 590.0
55 TraesCS4D01G103300 chr3D 91.228 57 3 2 1497 1553 16052749 16052695 4.790000e-10 76.8
56 TraesCS4D01G103300 chr2D 83.205 649 102 7 3812 4457 17065425 17066069 4.970000e-164 588.0
57 TraesCS4D01G103300 chr2D 91.620 179 14 1 161 339 516708477 516708300 3.450000e-61 246.0
58 TraesCS4D01G103300 chr2D 93.103 58 2 2 1495 1551 468098307 468098363 2.860000e-12 84.2
59 TraesCS4D01G103300 chr7B 82.748 655 105 8 3811 4462 747378150 747377501 1.080000e-160 577.0
60 TraesCS4D01G103300 chr7B 92.982 171 12 0 162 332 328511991 328512161 2.660000e-62 250.0
61 TraesCS4D01G103300 chr7B 93.548 93 5 1 1847 1939 458527882 458527973 2.160000e-28 137.0
62 TraesCS4D01G103300 chr5D 78.038 897 123 47 2601 3459 493121994 493122854 8.620000e-137 497.0
63 TraesCS4D01G103300 chr5D 78.753 433 51 24 866 1276 493120476 493120889 7.410000e-63 252.0
64 TraesCS4D01G103300 chr5D 93.023 172 10 2 159 329 25040147 25039977 2.660000e-62 250.0
65 TraesCS4D01G103300 chr5D 95.349 43 2 0 1000 1042 299832603 299832645 8.010000e-08 69.4
66 TraesCS4D01G103300 chr5A 80.045 441 46 29 861 1276 616069115 616069538 5.650000e-74 289.0
67 TraesCS4D01G103300 chr5A 95.833 144 6 0 1133 1276 397249880 397250023 2.680000e-57 233.0
68 TraesCS4D01G103300 chr5A 90.291 103 8 2 1844 1945 687871771 687871670 2.800000e-27 134.0
69 TraesCS4D01G103300 chrUn 92.982 171 12 0 156 326 280766128 280766298 2.660000e-62 250.0
70 TraesCS4D01G103300 chr7D 91.525 177 13 2 161 337 381797957 381797783 4.460000e-60 243.0
71 TraesCS4D01G103300 chr7D 88.182 110 11 2 1824 1931 122681665 122681774 3.620000e-26 130.0
72 TraesCS4D01G103300 chr7D 85.600 125 13 4 1840 1960 23365891 23365768 4.690000e-25 126.0
73 TraesCS4D01G103300 chr6A 92.079 101 7 1 1835 1934 7099603 7099703 1.670000e-29 141.0
74 TraesCS4D01G103300 chr3B 90.476 105 9 1 1835 1939 101314942 101315045 2.160000e-28 137.0
75 TraesCS4D01G103300 chr7A 91.837 98 7 1 1847 1944 57610071 57610167 7.790000e-28 135.0
76 TraesCS4D01G103300 chr7A 89.583 96 7 1 18 110 703703848 703703753 7.840000e-23 119.0
77 TraesCS4D01G103300 chr7A 88.235 85 7 1 30 111 650871179 650871263 1.020000e-16 99.0
78 TraesCS4D01G103300 chr3A 88.889 108 8 3 1828 1932 37821306 37821412 3.620000e-26 130.0
79 TraesCS4D01G103300 chr6D 96.000 50 2 0 1489 1538 114231257 114231306 1.030000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G103300 chr4D 81983987 81988448 4461 True 8240.000000 8240 100.000000 1 4462 1 chr4D.!!$R2 4461
1 TraesCS4D01G103300 chr4D 81971723 81974419 2696 True 483.000000 621 80.773667 863 3478 3 chr4D.!!$R4 2615
2 TraesCS4D01G103300 chr4A 492029911 492033054 3143 True 2051.500000 2767 92.297000 480 3753 2 chr4A.!!$R3 3273
3 TraesCS4D01G103300 chr4A 491915111 491917749 2638 True 387.750000 706 82.909750 863 3464 4 chr4A.!!$R2 2601
4 TraesCS4D01G103300 chr4B 115878146 115882183 4037 True 1039.540000 2665 94.658800 484 4295 5 chr4B.!!$R5 3811
5 TraesCS4D01G103300 chr4B 291895938 291896594 656 True 689.000000 689 85.714000 3809 4462 1 chr4B.!!$R2 653
6 TraesCS4D01G103300 chr4B 115845570 115848126 2556 True 688.500000 1011 79.496500 861 3464 2 chr4B.!!$R4 2603
7 TraesCS4D01G103300 chr1D 452625412 452626866 1454 True 1016.000000 1016 80.067000 2032 3465 1 chr1D.!!$R2 1433
8 TraesCS4D01G103300 chr1D 357331127 357331768 641 True 573.000000 573 82.870000 3810 4454 1 chr1D.!!$R1 644
9 TraesCS4D01G103300 chr5B 608199696 608204057 4361 False 493.000000 736 78.617000 883 3478 2 chr5B.!!$F4 2595
10 TraesCS4D01G103300 chr5B 608340785 608344543 3758 False 396.000000 553 83.927667 1109 3465 3 chr5B.!!$F5 2356
11 TraesCS4D01G103300 chr1A 547391829 547395709 3880 True 444.333333 684 91.330000 1133 3465 3 chr1A.!!$R1 2332
12 TraesCS4D01G103300 chr1A 547413264 547417286 4022 True 438.500000 616 90.569500 1133 2745 2 chr1A.!!$R2 1612
13 TraesCS4D01G103300 chr2A 764823204 764823848 644 True 658.000000 658 85.116000 3820 4462 1 chr2A.!!$R1 642
14 TraesCS4D01G103300 chr6B 224220545 224221189 644 False 630.000000 630 84.414000 3820 4462 1 chr6B.!!$F1 642
15 TraesCS4D01G103300 chr2B 59680339 59680989 650 False 627.000000 627 84.098000 3811 4462 1 chr2B.!!$F1 651
16 TraesCS4D01G103300 chr1B 622706620 622708112 1492 True 511.500000 599 80.759500 2032 3478 2 chr1B.!!$R2 1446
17 TraesCS4D01G103300 chr3D 611220184 611220816 632 True 590.000000 590 83.542000 3820 4455 1 chr3D.!!$R2 635
18 TraesCS4D01G103300 chr2D 17065425 17066069 644 False 588.000000 588 83.205000 3812 4457 1 chr2D.!!$F1 645
19 TraesCS4D01G103300 chr7B 747377501 747378150 649 True 577.000000 577 82.748000 3811 4462 1 chr7B.!!$R1 651
20 TraesCS4D01G103300 chr5D 493120476 493122854 2378 False 374.500000 497 78.395500 866 3459 2 chr5D.!!$F2 2593

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
951 977 0.244994 GCAGAAGCAGGAACGAGAGA 59.755 55.000 0.0 0.0 41.58 3.10 F
952 978 1.134848 GCAGAAGCAGGAACGAGAGAT 60.135 52.381 0.0 0.0 41.58 2.75 F
2340 9339 1.069358 CCTAGCGAAGATCAACCCCTC 59.931 57.143 0.0 0.0 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2209 9076 0.249615 CATCACCGATCATCACGCCT 60.250 55.0 0.00 0.0 0.00 5.52 R
2876 10095 0.827089 CAATGGCTTGGTGTGGTCCA 60.827 55.0 0.00 0.0 35.49 4.02 R
3834 11566 0.035439 GTCCAAATTCAGAGGCCGGA 60.035 55.0 5.05 0.0 0.00 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.872370 GAGCACAACAGCAATTCATCC 58.128 47.619 0.00 0.00 36.85 3.51
21 22 2.229543 GAGCACAACAGCAATTCATCCA 59.770 45.455 0.00 0.00 36.85 3.41
22 23 2.629137 AGCACAACAGCAATTCATCCAA 59.371 40.909 0.00 0.00 36.85 3.53
23 24 2.991190 GCACAACAGCAATTCATCCAAG 59.009 45.455 0.00 0.00 0.00 3.61
24 25 2.991190 CACAACAGCAATTCATCCAAGC 59.009 45.455 0.00 0.00 0.00 4.01
25 26 2.256174 CAACAGCAATTCATCCAAGCG 58.744 47.619 0.00 0.00 0.00 4.68
26 27 1.538047 ACAGCAATTCATCCAAGCGT 58.462 45.000 0.00 0.00 0.00 5.07
27 28 1.200716 ACAGCAATTCATCCAAGCGTG 59.799 47.619 0.00 0.00 0.00 5.34
44 45 5.993106 AGCGTGGAGATTTTATCTTAAGC 57.007 39.130 0.00 0.00 40.38 3.09
45 46 5.428253 AGCGTGGAGATTTTATCTTAAGCA 58.572 37.500 0.00 0.00 40.38 3.91
46 47 5.525378 AGCGTGGAGATTTTATCTTAAGCAG 59.475 40.000 0.00 0.00 40.38 4.24
47 48 5.277538 GCGTGGAGATTTTATCTTAAGCAGG 60.278 44.000 0.00 0.00 40.38 4.85
48 49 6.049149 CGTGGAGATTTTATCTTAAGCAGGA 58.951 40.000 0.00 0.00 40.38 3.86
49 50 6.708054 CGTGGAGATTTTATCTTAAGCAGGAT 59.292 38.462 0.00 0.00 40.38 3.24
50 51 7.095439 CGTGGAGATTTTATCTTAAGCAGGATC 60.095 40.741 0.00 0.00 40.38 3.36
51 52 7.936301 GTGGAGATTTTATCTTAAGCAGGATCT 59.064 37.037 0.00 3.20 40.38 2.75
52 53 8.497745 TGGAGATTTTATCTTAAGCAGGATCTT 58.502 33.333 0.00 0.00 40.38 2.40
64 65 5.683876 AGCAGGATCTTAAGTTGCTTAGA 57.316 39.130 15.56 0.00 42.01 2.10
65 66 6.245890 AGCAGGATCTTAAGTTGCTTAGAT 57.754 37.500 15.56 0.00 42.01 1.98
66 67 7.366847 AGCAGGATCTTAAGTTGCTTAGATA 57.633 36.000 15.56 0.00 42.01 1.98
67 68 7.213678 AGCAGGATCTTAAGTTGCTTAGATAC 58.786 38.462 15.56 0.00 42.01 2.24
68 69 6.986817 GCAGGATCTTAAGTTGCTTAGATACA 59.013 38.462 4.93 0.00 0.00 2.29
69 70 7.495934 GCAGGATCTTAAGTTGCTTAGATACAA 59.504 37.037 4.93 0.00 0.00 2.41
70 71 9.383519 CAGGATCTTAAGTTGCTTAGATACAAA 57.616 33.333 4.93 0.00 0.00 2.83
71 72 9.606631 AGGATCTTAAGTTGCTTAGATACAAAG 57.393 33.333 1.63 0.00 0.00 2.77
72 73 9.601217 GGATCTTAAGTTGCTTAGATACAAAGA 57.399 33.333 1.63 0.00 0.00 2.52
79 80 8.770438 AGTTGCTTAGATACAAAGAAGAGAAG 57.230 34.615 0.00 0.00 0.00 2.85
80 81 7.333174 AGTTGCTTAGATACAAAGAAGAGAAGC 59.667 37.037 0.00 0.00 37.79 3.86
81 82 6.701340 TGCTTAGATACAAAGAAGAGAAGCA 58.299 36.000 0.00 0.00 43.13 3.91
82 83 6.591834 TGCTTAGATACAAAGAAGAGAAGCAC 59.408 38.462 0.00 0.00 41.17 4.40
83 84 6.816140 GCTTAGATACAAAGAAGAGAAGCACT 59.184 38.462 0.00 0.00 37.35 4.40
84 85 7.333174 GCTTAGATACAAAGAAGAGAAGCACTT 59.667 37.037 0.00 0.00 37.35 3.16
85 86 9.213799 CTTAGATACAAAGAAGAGAAGCACTTT 57.786 33.333 0.00 0.00 33.69 2.66
86 87 7.665561 AGATACAAAGAAGAGAAGCACTTTC 57.334 36.000 0.00 0.00 35.97 2.62
87 88 7.220030 AGATACAAAGAAGAGAAGCACTTTCA 58.780 34.615 0.00 0.00 38.31 2.69
88 89 7.716998 AGATACAAAGAAGAGAAGCACTTTCAA 59.283 33.333 0.00 0.00 38.31 2.69
89 90 6.129053 ACAAAGAAGAGAAGCACTTTCAAG 57.871 37.500 0.00 0.00 38.31 3.02
90 91 5.882557 ACAAAGAAGAGAAGCACTTTCAAGA 59.117 36.000 0.00 0.00 38.31 3.02
91 92 6.038050 ACAAAGAAGAGAAGCACTTTCAAGAG 59.962 38.462 0.00 0.00 38.31 2.85
92 93 4.064388 AGAAGAGAAGCACTTTCAAGAGC 58.936 43.478 1.08 1.08 42.00 4.09
100 101 3.882982 GCACTTTCAAGAGCTTTCAGAC 58.117 45.455 2.09 0.00 39.17 3.51
101 102 3.563390 GCACTTTCAAGAGCTTTCAGACT 59.437 43.478 2.09 0.00 39.17 3.24
102 103 4.752101 GCACTTTCAAGAGCTTTCAGACTA 59.248 41.667 2.09 0.00 39.17 2.59
103 104 5.107143 GCACTTTCAAGAGCTTTCAGACTAG 60.107 44.000 2.09 0.00 39.17 2.57
104 105 6.219473 CACTTTCAAGAGCTTTCAGACTAGA 58.781 40.000 0.00 0.00 0.00 2.43
105 106 6.873076 CACTTTCAAGAGCTTTCAGACTAGAT 59.127 38.462 0.00 0.00 0.00 1.98
106 107 8.031864 CACTTTCAAGAGCTTTCAGACTAGATA 58.968 37.037 0.00 0.00 0.00 1.98
107 108 8.250332 ACTTTCAAGAGCTTTCAGACTAGATAG 58.750 37.037 0.00 0.00 0.00 2.08
108 109 7.946381 TTCAAGAGCTTTCAGACTAGATAGA 57.054 36.000 0.00 0.00 0.00 1.98
109 110 8.532186 TTCAAGAGCTTTCAGACTAGATAGAT 57.468 34.615 0.00 0.00 0.00 1.98
110 111 8.165239 TCAAGAGCTTTCAGACTAGATAGATC 57.835 38.462 0.00 0.00 33.88 2.75
111 112 7.998383 TCAAGAGCTTTCAGACTAGATAGATCT 59.002 37.037 0.00 0.00 41.76 2.75
112 113 8.632679 CAAGAGCTTTCAGACTAGATAGATCTT 58.367 37.037 0.00 14.13 46.10 2.40
113 114 8.396272 AGAGCTTTCAGACTAGATAGATCTTC 57.604 38.462 0.00 0.00 38.56 2.87
114 115 7.448469 AGAGCTTTCAGACTAGATAGATCTTCC 59.552 40.741 0.00 0.00 38.56 3.46
115 116 7.066142 AGCTTTCAGACTAGATAGATCTTCCA 58.934 38.462 0.00 0.00 38.32 3.53
116 117 7.563188 AGCTTTCAGACTAGATAGATCTTCCAA 59.437 37.037 0.00 0.00 38.32 3.53
117 118 7.867403 GCTTTCAGACTAGATAGATCTTCCAAG 59.133 40.741 0.00 2.62 38.32 3.61
118 119 6.892658 TCAGACTAGATAGATCTTCCAAGC 57.107 41.667 0.00 0.00 38.32 4.01
119 120 6.368805 TCAGACTAGATAGATCTTCCAAGCA 58.631 40.000 0.00 0.00 38.32 3.91
120 121 6.264292 TCAGACTAGATAGATCTTCCAAGCAC 59.736 42.308 0.00 0.00 38.32 4.40
121 122 6.040278 CAGACTAGATAGATCTTCCAAGCACA 59.960 42.308 0.00 0.00 38.32 4.57
122 123 6.265196 AGACTAGATAGATCTTCCAAGCACAG 59.735 42.308 0.00 0.00 38.32 3.66
123 124 4.070630 AGATAGATCTTCCAAGCACAGC 57.929 45.455 0.00 0.00 31.97 4.40
124 125 3.453717 AGATAGATCTTCCAAGCACAGCA 59.546 43.478 0.00 0.00 31.97 4.41
125 126 2.110901 AGATCTTCCAAGCACAGCAG 57.889 50.000 0.00 0.00 0.00 4.24
126 127 0.450983 GATCTTCCAAGCACAGCAGC 59.549 55.000 0.00 0.00 0.00 5.25
127 128 0.251033 ATCTTCCAAGCACAGCAGCA 60.251 50.000 0.00 0.00 36.85 4.41
128 129 1.168407 TCTTCCAAGCACAGCAGCAC 61.168 55.000 0.00 0.00 36.85 4.40
129 130 1.152902 TTCCAAGCACAGCAGCACT 60.153 52.632 0.00 0.00 36.85 4.40
130 131 0.752743 TTCCAAGCACAGCAGCACTT 60.753 50.000 0.00 0.00 36.85 3.16
131 132 1.168407 TCCAAGCACAGCAGCACTTC 61.168 55.000 0.00 0.00 36.85 3.01
132 133 1.449726 CCAAGCACAGCAGCACTTCA 61.450 55.000 0.00 0.00 36.85 3.02
133 134 0.596577 CAAGCACAGCAGCACTTCAT 59.403 50.000 0.00 0.00 36.85 2.57
134 135 0.879765 AAGCACAGCAGCACTTCATC 59.120 50.000 0.00 0.00 36.85 2.92
135 136 0.959372 AGCACAGCAGCACTTCATCC 60.959 55.000 0.00 0.00 36.85 3.51
136 137 1.239296 GCACAGCAGCACTTCATCCA 61.239 55.000 0.00 0.00 0.00 3.41
137 138 1.241165 CACAGCAGCACTTCATCCAA 58.759 50.000 0.00 0.00 0.00 3.53
138 139 1.610038 CACAGCAGCACTTCATCCAAA 59.390 47.619 0.00 0.00 0.00 3.28
139 140 1.610522 ACAGCAGCACTTCATCCAAAC 59.389 47.619 0.00 0.00 0.00 2.93
140 141 1.610038 CAGCAGCACTTCATCCAAACA 59.390 47.619 0.00 0.00 0.00 2.83
141 142 2.230508 CAGCAGCACTTCATCCAAACAT 59.769 45.455 0.00 0.00 0.00 2.71
142 143 3.441222 CAGCAGCACTTCATCCAAACATA 59.559 43.478 0.00 0.00 0.00 2.29
143 144 4.097437 CAGCAGCACTTCATCCAAACATAT 59.903 41.667 0.00 0.00 0.00 1.78
144 145 4.708421 AGCAGCACTTCATCCAAACATATT 59.292 37.500 0.00 0.00 0.00 1.28
145 146 4.802039 GCAGCACTTCATCCAAACATATTG 59.198 41.667 0.00 0.00 0.00 1.90
146 147 5.622914 GCAGCACTTCATCCAAACATATTGT 60.623 40.000 0.00 0.00 0.00 2.71
147 148 6.392354 CAGCACTTCATCCAAACATATTGTT 58.608 36.000 0.00 0.00 43.41 2.83
188 189 8.935741 ACTCCCTCCGTTTCTAAATATTTATCT 58.064 33.333 8.34 0.00 0.00 1.98
189 190 9.780186 CTCCCTCCGTTTCTAAATATTTATCTT 57.220 33.333 8.34 0.00 0.00 2.40
216 217 9.567776 TTTAGAGATTTCAAATGAACTACCACA 57.432 29.630 0.00 0.00 33.13 4.17
217 218 9.739276 TTAGAGATTTCAAATGAACTACCACAT 57.261 29.630 0.00 0.00 33.13 3.21
219 220 9.911788 AGAGATTTCAAATGAACTACCACATAT 57.088 29.630 0.00 0.00 33.13 1.78
221 222 8.830580 AGATTTCAAATGAACTACCACATATCG 58.169 33.333 0.00 0.00 33.13 2.92
222 223 8.731275 ATTTCAAATGAACTACCACATATCGA 57.269 30.769 0.00 0.00 33.13 3.59
223 224 7.534085 TTCAAATGAACTACCACATATCGAC 57.466 36.000 0.00 0.00 0.00 4.20
224 225 5.746721 TCAAATGAACTACCACATATCGACG 59.253 40.000 0.00 0.00 0.00 5.12
225 226 4.913335 ATGAACTACCACATATCGACGT 57.087 40.909 0.00 0.00 0.00 4.34
226 227 6.381481 AATGAACTACCACATATCGACGTA 57.619 37.500 0.00 0.00 0.00 3.57
227 228 6.570672 ATGAACTACCACATATCGACGTAT 57.429 37.500 0.00 0.00 0.00 3.06
228 229 7.677454 ATGAACTACCACATATCGACGTATA 57.323 36.000 0.00 0.00 0.00 1.47
229 230 7.677454 TGAACTACCACATATCGACGTATAT 57.323 36.000 0.00 0.00 0.00 0.86
230 231 8.776376 TGAACTACCACATATCGACGTATATA 57.224 34.615 0.00 0.00 0.00 0.86
231 232 9.387257 TGAACTACCACATATCGACGTATATAT 57.613 33.333 0.00 0.00 0.00 0.86
234 235 9.822185 ACTACCACATATCGACGTATATATACA 57.178 33.333 20.24 3.82 32.87 2.29
265 266 7.934855 AGAGTGTAGATTCATTCATTTTGCT 57.065 32.000 0.00 0.00 0.00 3.91
266 267 8.345724 AGAGTGTAGATTCATTCATTTTGCTT 57.654 30.769 0.00 0.00 0.00 3.91
267 268 8.457261 AGAGTGTAGATTCATTCATTTTGCTTC 58.543 33.333 0.00 0.00 0.00 3.86
268 269 7.246311 AGTGTAGATTCATTCATTTTGCTTCG 58.754 34.615 0.00 0.00 0.00 3.79
269 270 7.023575 GTGTAGATTCATTCATTTTGCTTCGT 58.976 34.615 0.00 0.00 0.00 3.85
270 271 8.175069 GTGTAGATTCATTCATTTTGCTTCGTA 58.825 33.333 0.00 0.00 0.00 3.43
271 272 8.892723 TGTAGATTCATTCATTTTGCTTCGTAT 58.107 29.630 0.00 0.00 0.00 3.06
272 273 9.162793 GTAGATTCATTCATTTTGCTTCGTATG 57.837 33.333 0.00 0.00 0.00 2.39
273 274 7.765307 AGATTCATTCATTTTGCTTCGTATGT 58.235 30.769 0.00 0.00 0.00 2.29
274 275 8.892723 AGATTCATTCATTTTGCTTCGTATGTA 58.107 29.630 0.00 0.00 0.00 2.29
275 276 9.162793 GATTCATTCATTTTGCTTCGTATGTAG 57.837 33.333 0.00 0.00 0.00 2.74
276 277 7.609760 TCATTCATTTTGCTTCGTATGTAGT 57.390 32.000 0.00 0.00 0.00 2.73
277 278 7.684670 TCATTCATTTTGCTTCGTATGTAGTC 58.315 34.615 0.00 0.00 0.00 2.59
278 279 7.333174 TCATTCATTTTGCTTCGTATGTAGTCA 59.667 33.333 0.00 0.00 0.00 3.41
279 280 6.403333 TCATTTTGCTTCGTATGTAGTCAC 57.597 37.500 0.00 0.00 0.00 3.67
280 281 6.163476 TCATTTTGCTTCGTATGTAGTCACT 58.837 36.000 0.00 0.00 0.00 3.41
281 282 6.649141 TCATTTTGCTTCGTATGTAGTCACTT 59.351 34.615 0.00 0.00 0.00 3.16
282 283 5.839262 TTTGCTTCGTATGTAGTCACTTG 57.161 39.130 0.00 0.00 0.00 3.16
283 284 4.514781 TGCTTCGTATGTAGTCACTTGT 57.485 40.909 0.00 0.00 0.00 3.16
284 285 4.878439 TGCTTCGTATGTAGTCACTTGTT 58.122 39.130 0.00 0.00 0.00 2.83
285 286 4.684242 TGCTTCGTATGTAGTCACTTGTTG 59.316 41.667 0.00 0.00 0.00 3.33
286 287 4.921515 GCTTCGTATGTAGTCACTTGTTGA 59.078 41.667 0.00 0.00 0.00 3.18
287 288 5.404366 GCTTCGTATGTAGTCACTTGTTGAA 59.596 40.000 0.00 0.00 35.39 2.69
288 289 6.073980 GCTTCGTATGTAGTCACTTGTTGAAA 60.074 38.462 0.00 0.00 35.39 2.69
289 290 7.360101 GCTTCGTATGTAGTCACTTGTTGAAAT 60.360 37.037 0.00 0.00 35.39 2.17
290 291 7.956420 TCGTATGTAGTCACTTGTTGAAATT 57.044 32.000 0.00 0.00 35.39 1.82
291 292 8.373048 TCGTATGTAGTCACTTGTTGAAATTT 57.627 30.769 0.00 0.00 35.39 1.82
292 293 8.492748 TCGTATGTAGTCACTTGTTGAAATTTC 58.507 33.333 11.41 11.41 35.39 2.17
293 294 8.495949 CGTATGTAGTCACTTGTTGAAATTTCT 58.504 33.333 18.64 0.00 35.39 2.52
296 297 9.778741 ATGTAGTCACTTGTTGAAATTTCTAGA 57.221 29.630 18.64 7.52 35.39 2.43
297 298 9.607988 TGTAGTCACTTGTTGAAATTTCTAGAA 57.392 29.630 18.64 14.37 35.39 2.10
300 301 9.396022 AGTCACTTGTTGAAATTTCTAGAAAGA 57.604 29.630 21.75 15.31 35.39 2.52
323 324 9.780186 AAGATAAATATTTAGAAACGGAGGGAG 57.220 33.333 13.15 0.00 0.00 4.30
324 325 8.935741 AGATAAATATTTAGAAACGGAGGGAGT 58.064 33.333 13.15 0.00 0.00 3.85
328 329 9.916360 AAATATTTAGAAACGGAGGGAGTAAAT 57.084 29.630 0.00 0.00 0.00 1.40
330 331 9.993454 ATATTTAGAAACGGAGGGAGTAAATAC 57.007 33.333 0.00 0.00 0.00 1.89
331 332 4.750021 AGAAACGGAGGGAGTAAATACC 57.250 45.455 0.00 0.00 0.00 2.73
332 333 4.098894 AGAAACGGAGGGAGTAAATACCA 58.901 43.478 0.00 0.00 31.98 3.25
333 334 4.720273 AGAAACGGAGGGAGTAAATACCAT 59.280 41.667 0.00 0.00 31.98 3.55
334 335 5.901276 AGAAACGGAGGGAGTAAATACCATA 59.099 40.000 0.00 0.00 31.98 2.74
335 336 5.803237 AACGGAGGGAGTAAATACCATAG 57.197 43.478 0.00 0.00 31.98 2.23
336 337 5.070823 ACGGAGGGAGTAAATACCATAGA 57.929 43.478 0.00 0.00 31.98 1.98
337 338 5.461327 ACGGAGGGAGTAAATACCATAGAA 58.539 41.667 0.00 0.00 31.98 2.10
338 339 5.303845 ACGGAGGGAGTAAATACCATAGAAC 59.696 44.000 0.00 0.00 31.98 3.01
339 340 5.279356 CGGAGGGAGTAAATACCATAGAACC 60.279 48.000 0.00 0.00 31.98 3.62
340 341 5.605488 GGAGGGAGTAAATACCATAGAACCA 59.395 44.000 0.00 0.00 31.98 3.67
341 342 6.272558 GGAGGGAGTAAATACCATAGAACCAT 59.727 42.308 0.00 0.00 31.98 3.55
342 343 7.202195 GGAGGGAGTAAATACCATAGAACCATT 60.202 40.741 0.00 0.00 31.98 3.16
343 344 7.518188 AGGGAGTAAATACCATAGAACCATTG 58.482 38.462 0.00 0.00 31.98 2.82
344 345 7.128883 AGGGAGTAAATACCATAGAACCATTGT 59.871 37.037 0.00 0.00 31.98 2.71
345 346 7.778382 GGGAGTAAATACCATAGAACCATTGTT 59.222 37.037 0.00 0.00 37.42 2.83
359 360 4.370364 CCATTGTTCTATGGTTTTCGGG 57.630 45.455 5.39 0.00 40.20 5.14
360 361 3.761752 CCATTGTTCTATGGTTTTCGGGT 59.238 43.478 5.39 0.00 40.20 5.28
361 362 4.944930 CCATTGTTCTATGGTTTTCGGGTA 59.055 41.667 5.39 0.00 40.20 3.69
362 363 5.416326 CCATTGTTCTATGGTTTTCGGGTAA 59.584 40.000 5.39 0.00 40.20 2.85
363 364 6.071840 CCATTGTTCTATGGTTTTCGGGTAAA 60.072 38.462 5.39 0.00 40.20 2.01
364 365 6.956202 TTGTTCTATGGTTTTCGGGTAAAA 57.044 33.333 0.00 0.00 34.66 1.52
365 366 6.956202 TGTTCTATGGTTTTCGGGTAAAAA 57.044 33.333 0.00 0.00 38.76 1.94
407 408 8.987599 AATTAACATGAACGATTAATAGCACG 57.012 30.769 0.00 0.00 30.24 5.34
408 409 5.403897 AACATGAACGATTAATAGCACGG 57.596 39.130 0.00 0.00 0.00 4.94
409 410 4.439057 ACATGAACGATTAATAGCACGGT 58.561 39.130 0.00 0.00 0.00 4.83
410 411 4.873827 ACATGAACGATTAATAGCACGGTT 59.126 37.500 0.00 0.00 0.00 4.44
411 412 4.850859 TGAACGATTAATAGCACGGTTG 57.149 40.909 0.00 0.00 0.00 3.77
412 413 4.496360 TGAACGATTAATAGCACGGTTGA 58.504 39.130 0.00 0.00 0.00 3.18
413 414 4.930405 TGAACGATTAATAGCACGGTTGAA 59.070 37.500 0.00 0.00 0.00 2.69
414 415 5.408909 TGAACGATTAATAGCACGGTTGAAA 59.591 36.000 0.00 0.00 0.00 2.69
415 416 5.866335 ACGATTAATAGCACGGTTGAAAA 57.134 34.783 0.00 0.00 0.00 2.29
434 435 9.248291 GTTGAAAACTAAGCATTTTTCTGATCA 57.752 29.630 0.00 0.00 45.32 2.92
435 436 9.814899 TTGAAAACTAAGCATTTTTCTGATCAA 57.185 25.926 0.00 0.00 40.76 2.57
436 437 9.814899 TGAAAACTAAGCATTTTTCTGATCAAA 57.185 25.926 0.00 0.00 40.76 2.69
471 472 7.640597 AAATTACTTTAATCCGAAAGAGGGG 57.359 36.000 3.04 0.00 38.48 4.79
472 473 5.767277 TTACTTTAATCCGAAAGAGGGGT 57.233 39.130 3.04 0.00 38.48 4.95
473 474 4.652679 ACTTTAATCCGAAAGAGGGGTT 57.347 40.909 3.04 0.00 38.48 4.11
474 475 5.767277 ACTTTAATCCGAAAGAGGGGTTA 57.233 39.130 3.04 0.00 38.48 2.85
475 476 6.323210 ACTTTAATCCGAAAGAGGGGTTAT 57.677 37.500 3.04 0.00 38.48 1.89
476 477 6.120220 ACTTTAATCCGAAAGAGGGGTTATG 58.880 40.000 3.04 0.00 38.48 1.90
477 478 5.703730 TTAATCCGAAAGAGGGGTTATGT 57.296 39.130 0.00 0.00 0.00 2.29
478 479 3.840124 ATCCGAAAGAGGGGTTATGTC 57.160 47.619 0.00 0.00 0.00 3.06
482 483 3.181468 CCGAAAGAGGGGTTATGTCCTAC 60.181 52.174 0.00 0.00 32.74 3.18
491 492 8.218488 AGAGGGGTTATGTCCTACAATTTATTC 58.782 37.037 0.00 0.00 32.74 1.75
493 494 6.293790 GGGGTTATGTCCTACAATTTATTCGC 60.294 42.308 0.00 0.00 0.00 4.70
598 599 8.893219 ATCAGCTTGATTGATTATTACGAAGA 57.107 30.769 0.00 0.00 32.13 2.87
632 633 2.489329 CGACAAGGAAGAATGCCATGTT 59.511 45.455 0.00 0.00 34.43 2.71
640 641 6.662755 AGGAAGAATGCCATGTTAATAGACA 58.337 36.000 0.00 0.00 34.43 3.41
650 651 4.385358 TGTTAATAGACAGCTGCGATCA 57.615 40.909 15.27 0.00 0.00 2.92
678 679 3.492353 CCATCCCATCCGCCCACT 61.492 66.667 0.00 0.00 0.00 4.00
685 686 2.115052 ATCCGCCCACTGCAAACA 59.885 55.556 0.00 0.00 41.33 2.83
835 860 2.628178 TCTTCTTTCCTCACTTGCTCGA 59.372 45.455 0.00 0.00 0.00 4.04
836 861 3.259374 TCTTCTTTCCTCACTTGCTCGAT 59.741 43.478 0.00 0.00 0.00 3.59
846 871 1.139853 ACTTGCTCGATGATTCCTCCC 59.860 52.381 0.00 0.00 0.00 4.30
849 874 1.372251 CTCGATGATTCCTCCCGCG 60.372 63.158 0.00 0.00 0.00 6.46
851 876 2.423446 GATGATTCCTCCCGCGCT 59.577 61.111 5.56 0.00 0.00 5.92
852 877 1.958205 GATGATTCCTCCCGCGCTG 60.958 63.158 5.56 0.00 0.00 5.18
853 878 4.838152 TGATTCCTCCCGCGCTGC 62.838 66.667 5.56 0.00 0.00 5.25
905 931 2.552315 GCTTCGTTCCTCACCAAAATCA 59.448 45.455 0.00 0.00 0.00 2.57
906 932 3.191371 GCTTCGTTCCTCACCAAAATCAT 59.809 43.478 0.00 0.00 0.00 2.45
907 933 4.394920 GCTTCGTTCCTCACCAAAATCATA 59.605 41.667 0.00 0.00 0.00 2.15
908 934 5.106317 GCTTCGTTCCTCACCAAAATCATAA 60.106 40.000 0.00 0.00 0.00 1.90
909 935 6.494893 TTCGTTCCTCACCAAAATCATAAG 57.505 37.500 0.00 0.00 0.00 1.73
910 936 4.394920 TCGTTCCTCACCAAAATCATAAGC 59.605 41.667 0.00 0.00 0.00 3.09
911 937 4.155826 CGTTCCTCACCAAAATCATAAGCA 59.844 41.667 0.00 0.00 0.00 3.91
912 938 5.335583 CGTTCCTCACCAAAATCATAAGCAA 60.336 40.000 0.00 0.00 0.00 3.91
913 939 5.643379 TCCTCACCAAAATCATAAGCAAC 57.357 39.130 0.00 0.00 0.00 4.17
946 972 0.386478 GCAAAGCAGAAGCAGGAACG 60.386 55.000 0.00 0.00 45.49 3.95
947 973 1.229428 CAAAGCAGAAGCAGGAACGA 58.771 50.000 0.00 0.00 45.49 3.85
948 974 1.196354 CAAAGCAGAAGCAGGAACGAG 59.804 52.381 0.00 0.00 45.49 4.18
949 975 0.681733 AAGCAGAAGCAGGAACGAGA 59.318 50.000 0.00 0.00 45.49 4.04
950 976 0.246086 AGCAGAAGCAGGAACGAGAG 59.754 55.000 0.00 0.00 45.49 3.20
951 977 0.244994 GCAGAAGCAGGAACGAGAGA 59.755 55.000 0.00 0.00 41.58 3.10
952 978 1.134848 GCAGAAGCAGGAACGAGAGAT 60.135 52.381 0.00 0.00 41.58 2.75
953 979 2.808244 CAGAAGCAGGAACGAGAGATC 58.192 52.381 0.00 0.00 0.00 2.75
960 986 3.626977 CAGGAACGAGAGATCAAGATCG 58.373 50.000 4.54 1.42 42.48 3.69
993 1022 2.439701 TTCCCGGAGCGATCGAGT 60.440 61.111 21.57 4.39 0.00 4.18
995 1024 4.271816 CCCGGAGCGATCGAGTGG 62.272 72.222 21.57 13.73 0.00 4.00
999 1035 1.721664 CGGAGCGATCGAGTGGGTTA 61.722 60.000 21.57 0.00 0.00 2.85
1053 1089 6.322491 CAAAGGTTCGTTCTTCAAATATCCC 58.678 40.000 0.00 0.00 0.00 3.85
1054 1090 5.174037 AGGTTCGTTCTTCAAATATCCCA 57.826 39.130 0.00 0.00 0.00 4.37
1064 1123 7.519032 TCTTCAAATATCCCACGAAAGTTTT 57.481 32.000 0.00 0.00 46.40 2.43
1072 1131 3.383185 TCCCACGAAAGTTTTGCTTGATT 59.617 39.130 2.53 0.00 46.40 2.57
1098 1157 4.633126 TGAAGAAGCTCTGGAATTTCATCG 59.367 41.667 0.00 0.00 0.00 3.84
1494 4458 9.880157 CTGATTAATTTGGTGGAATCTTGAATT 57.120 29.630 0.00 0.00 31.03 2.17
1495 4459 9.656040 TGATTAATTTGGTGGAATCTTGAATTG 57.344 29.630 0.00 0.00 31.03 2.32
1496 4460 9.657419 GATTAATTTGGTGGAATCTTGAATTGT 57.343 29.630 0.00 0.00 0.00 2.71
1498 4462 9.921637 TTAATTTGGTGGAATCTTGAATTGTAC 57.078 29.630 0.00 0.00 0.00 2.90
1499 4463 7.781324 ATTTGGTGGAATCTTGAATTGTACT 57.219 32.000 0.00 0.00 0.00 2.73
1500 4464 6.817765 TTGGTGGAATCTTGAATTGTACTC 57.182 37.500 0.00 0.00 0.00 2.59
1501 4465 5.253330 TGGTGGAATCTTGAATTGTACTCC 58.747 41.667 0.00 0.00 0.00 3.85
1502 4466 4.640647 GGTGGAATCTTGAATTGTACTCCC 59.359 45.833 0.00 0.00 0.00 4.30
1503 4467 5.501156 GTGGAATCTTGAATTGTACTCCCT 58.499 41.667 0.00 0.00 0.00 4.20
1504 4468 5.586643 GTGGAATCTTGAATTGTACTCCCTC 59.413 44.000 0.00 0.00 0.00 4.30
1505 4469 5.126779 GGAATCTTGAATTGTACTCCCTCC 58.873 45.833 0.00 0.00 0.00 4.30
1506 4470 3.887621 TCTTGAATTGTACTCCCTCCG 57.112 47.619 0.00 0.00 0.00 4.63
1507 4471 3.170717 TCTTGAATTGTACTCCCTCCGT 58.829 45.455 0.00 0.00 0.00 4.69
1508 4472 3.194968 TCTTGAATTGTACTCCCTCCGTC 59.805 47.826 0.00 0.00 0.00 4.79
1509 4473 2.816411 TGAATTGTACTCCCTCCGTCT 58.184 47.619 0.00 0.00 0.00 4.18
1510 4474 2.758979 TGAATTGTACTCCCTCCGTCTC 59.241 50.000 0.00 0.00 0.00 3.36
1511 4475 2.526888 ATTGTACTCCCTCCGTCTCA 57.473 50.000 0.00 0.00 0.00 3.27
1512 4476 2.526888 TTGTACTCCCTCCGTCTCAT 57.473 50.000 0.00 0.00 0.00 2.90
1513 4477 3.657398 TTGTACTCCCTCCGTCTCATA 57.343 47.619 0.00 0.00 0.00 2.15
1514 4478 3.657398 TGTACTCCCTCCGTCTCATAA 57.343 47.619 0.00 0.00 0.00 1.90
1515 4479 4.180377 TGTACTCCCTCCGTCTCATAAT 57.820 45.455 0.00 0.00 0.00 1.28
1516 4480 5.314718 TGTACTCCCTCCGTCTCATAATA 57.685 43.478 0.00 0.00 0.00 0.98
1517 4481 5.888901 TGTACTCCCTCCGTCTCATAATAT 58.111 41.667 0.00 0.00 0.00 1.28
1518 4482 7.024345 TGTACTCCCTCCGTCTCATAATATA 57.976 40.000 0.00 0.00 0.00 0.86
1519 4483 7.464273 TGTACTCCCTCCGTCTCATAATATAA 58.536 38.462 0.00 0.00 0.00 0.98
1520 4484 7.610692 TGTACTCCCTCCGTCTCATAATATAAG 59.389 40.741 0.00 0.00 0.00 1.73
1521 4485 6.791371 ACTCCCTCCGTCTCATAATATAAGA 58.209 40.000 0.00 0.00 0.00 2.10
1522 4486 6.887545 ACTCCCTCCGTCTCATAATATAAGAG 59.112 42.308 0.00 0.00 0.00 2.85
1523 4487 5.652891 TCCCTCCGTCTCATAATATAAGAGC 59.347 44.000 0.00 0.00 0.00 4.09
1524 4488 5.449314 CCCTCCGTCTCATAATATAAGAGCG 60.449 48.000 0.00 0.00 0.00 5.03
1525 4489 5.124138 CCTCCGTCTCATAATATAAGAGCGT 59.876 44.000 0.00 0.00 31.69 5.07
1526 4490 6.349445 CCTCCGTCTCATAATATAAGAGCGTT 60.349 42.308 0.00 0.00 31.69 4.84
1527 4491 6.978338 TCCGTCTCATAATATAAGAGCGTTT 58.022 36.000 0.00 0.00 31.69 3.60
1528 4492 7.431249 TCCGTCTCATAATATAAGAGCGTTTT 58.569 34.615 0.00 0.00 31.69 2.43
1529 4493 7.924412 TCCGTCTCATAATATAAGAGCGTTTTT 59.076 33.333 0.00 0.00 31.69 1.94
1530 4494 8.004344 CCGTCTCATAATATAAGAGCGTTTTTG 58.996 37.037 0.00 0.00 31.69 2.44
1531 4495 8.752254 CGTCTCATAATATAAGAGCGTTTTTGA 58.248 33.333 0.00 0.00 0.00 2.69
1532 4496 9.851043 GTCTCATAATATAAGAGCGTTTTTGAC 57.149 33.333 0.00 0.00 0.00 3.18
1533 4497 9.594478 TCTCATAATATAAGAGCGTTTTTGACA 57.406 29.630 0.00 0.00 0.00 3.58
1534 4498 9.638300 CTCATAATATAAGAGCGTTTTTGACAC 57.362 33.333 0.00 0.00 0.00 3.67
1535 4499 9.378551 TCATAATATAAGAGCGTTTTTGACACT 57.621 29.630 0.00 0.00 0.00 3.55
1538 4502 8.997621 AATATAAGAGCGTTTTTGACACTAGA 57.002 30.769 0.00 0.00 0.00 2.43
1539 4503 6.952935 ATAAGAGCGTTTTTGACACTAGAG 57.047 37.500 0.00 0.00 0.00 2.43
1540 4504 3.654414 AGAGCGTTTTTGACACTAGAGG 58.346 45.455 0.00 0.00 0.00 3.69
1541 4505 2.737252 GAGCGTTTTTGACACTAGAGGG 59.263 50.000 0.00 0.00 0.00 4.30
1542 4506 2.367567 AGCGTTTTTGACACTAGAGGGA 59.632 45.455 0.00 0.00 0.00 4.20
1543 4507 2.737252 GCGTTTTTGACACTAGAGGGAG 59.263 50.000 0.00 0.00 0.00 4.30
1546 4510 4.922103 CGTTTTTGACACTAGAGGGAGTAC 59.078 45.833 0.00 0.00 0.00 2.73
1816 8635 9.113876 CTTTAGCACGTTAGTAATTTTCAAAGG 57.886 33.333 0.00 0.00 0.00 3.11
1857 8676 8.488308 AACTACATATTTTATACTCCCTCCGT 57.512 34.615 0.00 0.00 0.00 4.69
1858 8677 9.592196 AACTACATATTTTATACTCCCTCCGTA 57.408 33.333 0.00 0.00 0.00 4.02
1859 8678 9.592196 ACTACATATTTTATACTCCCTCCGTAA 57.408 33.333 0.00 0.00 0.00 3.18
1862 8681 8.931568 ACATATTTTATACTCCCTCCGTAAACT 58.068 33.333 0.00 0.00 0.00 2.66
1872 8691 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
1873 8692 8.003629 ACTCCCTCCGTAAACTAATATAAGAGT 58.996 37.037 0.00 0.00 0.00 3.24
1874 8693 8.174733 TCCCTCCGTAAACTAATATAAGAGTG 57.825 38.462 0.00 0.00 0.00 3.51
1875 8694 7.781693 TCCCTCCGTAAACTAATATAAGAGTGT 59.218 37.037 0.00 0.00 0.00 3.55
1876 8695 8.419442 CCCTCCGTAAACTAATATAAGAGTGTT 58.581 37.037 0.00 0.00 0.00 3.32
1877 8696 9.813446 CCTCCGTAAACTAATATAAGAGTGTTT 57.187 33.333 0.00 0.00 0.00 2.83
2209 9076 1.405463 CTCAGGATCAATGTCGACCGA 59.595 52.381 14.12 7.50 0.00 4.69
2339 9338 1.123928 CCTAGCGAAGATCAACCCCT 58.876 55.000 0.00 0.00 0.00 4.79
2340 9339 1.069358 CCTAGCGAAGATCAACCCCTC 59.931 57.143 0.00 0.00 0.00 4.30
2408 9419 2.629051 GTAAGGGATTGTTCTGACCGG 58.371 52.381 0.00 0.00 0.00 5.28
2463 9479 8.275015 TGCCTCGATGATAATTTACTGAAAAA 57.725 30.769 0.00 0.00 0.00 1.94
2578 9604 6.150474 GCCTTGCTGTAAGTAACAAAGGATAA 59.850 38.462 11.14 0.00 44.15 1.75
2598 9750 9.784531 AGGATAATTATCTTCCACAATGTACTG 57.215 33.333 21.80 0.00 33.28 2.74
2622 9774 5.506982 GCTGCAGGTTGATGAGAATTATTCC 60.507 44.000 17.12 0.00 0.00 3.01
2750 9908 5.717078 AATACGAACAAGGTACAGTCTGA 57.283 39.130 6.91 0.00 0.00 3.27
2809 10020 2.933573 ACGTGGGTTTATGGACAACAA 58.066 42.857 0.00 0.00 0.00 2.83
2876 10095 2.295070 GCACCGACTTTGTAAACCCAAT 59.705 45.455 0.00 0.00 0.00 3.16
2893 10112 0.114954 AATGGACCACACCAAGCCAT 59.885 50.000 0.00 0.00 43.47 4.40
3043 10277 1.863662 GAGTCGACAGAGCCGTGGAA 61.864 60.000 19.50 0.00 0.00 3.53
3326 10651 2.633509 CGACCTCCCGGAAGTCGTT 61.634 63.158 24.68 0.00 46.23 3.85
3404 10729 2.434185 TCGCAGATCAACACGGCC 60.434 61.111 0.00 0.00 0.00 6.13
3465 10790 2.865079 TGAGGATGGACGAGTAGATCC 58.135 52.381 0.00 0.00 35.51 3.36
3475 10800 3.357203 ACGAGTAGATCCAGCTTCTTCA 58.643 45.455 0.00 0.00 0.00 3.02
3478 10803 4.545610 GAGTAGATCCAGCTTCTTCATCG 58.454 47.826 0.00 0.00 0.00 3.84
3565 10890 3.254060 AGTCGTTAGATGCACATGTGTC 58.746 45.455 26.01 16.76 0.00 3.67
3695 11422 8.754080 AGAGTAATAATAGTCTGCAGTTTCTGT 58.246 33.333 14.67 6.67 39.77 3.41
3699 11426 7.986085 ATAATAGTCTGCAGTTTCTGTGTTT 57.014 32.000 14.67 7.06 33.43 2.83
3702 11429 5.741388 AGTCTGCAGTTTCTGTGTTTAAG 57.259 39.130 14.67 0.00 33.43 1.85
3707 11434 3.311596 GCAGTTTCTGTGTTTAAGTCGGT 59.688 43.478 0.00 0.00 33.43 4.69
3741 11468 1.774639 GAAACGAATATCGGCGGCTA 58.225 50.000 7.21 0.00 45.59 3.93
3778 11505 0.729140 CACTTCCGATGTTTTGCGGC 60.729 55.000 0.00 0.00 46.79 6.53
3845 11579 1.758514 GATGACCTCCGGCCTCTGA 60.759 63.158 0.00 0.00 0.00 3.27
3938 11672 0.957395 AAGCCACCATCTCAGCAACG 60.957 55.000 0.00 0.00 0.00 4.10
3950 11684 0.110823 CAGCAACGTTTGTCGCTACC 60.111 55.000 10.15 0.00 44.19 3.18
3962 11696 2.091720 TGTCGCTACCCCTATCCACTTA 60.092 50.000 0.00 0.00 0.00 2.24
3970 11704 4.641868 ACCCCTATCCACTTAATGAAGGA 58.358 43.478 0.00 0.00 36.95 3.36
4016 11752 3.108144 CAAACAGACTTCGCACAAAAGG 58.892 45.455 0.00 0.00 0.00 3.11
4024 11760 4.069304 ACTTCGCACAAAAGGCTAACATA 58.931 39.130 0.00 0.00 0.00 2.29
4059 11796 1.411977 CCAACCAAGTCACAATGCCAA 59.588 47.619 0.00 0.00 0.00 4.52
4237 11978 3.427425 CCCGCATCGAACGCCAAA 61.427 61.111 5.74 0.00 0.00 3.28
4240 11981 1.082431 CGCATCGAACGCCAAAACA 60.082 52.632 4.76 0.00 0.00 2.83
4274 12015 2.478709 GCTGTCGAGATCTGTCGTCATT 60.479 50.000 0.00 0.00 40.93 2.57
4275 12016 3.242772 GCTGTCGAGATCTGTCGTCATTA 60.243 47.826 0.00 0.00 40.93 1.90
4296 12037 1.376812 GCGGAAGATGAAACCCCGT 60.377 57.895 0.00 0.00 41.95 5.28
4384 12126 1.327764 GAAGATGCCGTCATTTCCGAC 59.672 52.381 0.00 0.00 31.96 4.79
4387 12129 1.910580 ATGCCGTCATTTCCGACCCT 61.911 55.000 0.00 0.00 31.91 4.34
4396 12139 2.280552 TTCCGACCCTGGAAGACCG 61.281 63.158 0.00 0.00 43.01 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.229543 TGGATGAATTGCTGTTGTGCTC 59.770 45.455 0.00 0.00 0.00 4.26
1 2 2.241160 TGGATGAATTGCTGTTGTGCT 58.759 42.857 0.00 0.00 0.00 4.40
2 3 2.728690 TGGATGAATTGCTGTTGTGC 57.271 45.000 0.00 0.00 0.00 4.57
3 4 2.991190 GCTTGGATGAATTGCTGTTGTG 59.009 45.455 0.00 0.00 0.00 3.33
4 5 2.352030 CGCTTGGATGAATTGCTGTTGT 60.352 45.455 0.00 0.00 0.00 3.32
6 7 1.888512 ACGCTTGGATGAATTGCTGTT 59.111 42.857 0.00 0.00 0.00 3.16
8 9 1.904144 CACGCTTGGATGAATTGCTG 58.096 50.000 0.00 0.00 0.00 4.41
19 20 6.677781 TTAAGATAAAATCTCCACGCTTGG 57.322 37.500 1.99 1.99 45.56 3.61
20 21 6.183360 TGCTTAAGATAAAATCTCCACGCTTG 60.183 38.462 6.67 0.00 39.08 4.01
21 22 5.880332 TGCTTAAGATAAAATCTCCACGCTT 59.120 36.000 6.67 0.00 39.08 4.68
22 23 5.428253 TGCTTAAGATAAAATCTCCACGCT 58.572 37.500 6.67 0.00 39.08 5.07
23 24 5.277538 CCTGCTTAAGATAAAATCTCCACGC 60.278 44.000 6.67 0.00 39.08 5.34
24 25 6.049149 TCCTGCTTAAGATAAAATCTCCACG 58.951 40.000 6.67 0.00 39.08 4.94
25 26 7.936301 AGATCCTGCTTAAGATAAAATCTCCAC 59.064 37.037 6.67 0.00 39.08 4.02
26 27 8.038862 AGATCCTGCTTAAGATAAAATCTCCA 57.961 34.615 6.67 0.00 39.08 3.86
27 28 8.916628 AAGATCCTGCTTAAGATAAAATCTCC 57.083 34.615 6.67 0.00 39.08 3.71
42 43 5.683876 TCTAAGCAACTTAAGATCCTGCT 57.316 39.130 10.09 13.59 45.00 4.24
43 44 6.986817 TGTATCTAAGCAACTTAAGATCCTGC 59.013 38.462 10.09 11.65 0.00 4.85
44 45 8.948631 TTGTATCTAAGCAACTTAAGATCCTG 57.051 34.615 10.09 2.21 0.00 3.86
45 46 9.606631 CTTTGTATCTAAGCAACTTAAGATCCT 57.393 33.333 10.09 0.00 0.00 3.24
46 47 9.601217 TCTTTGTATCTAAGCAACTTAAGATCC 57.399 33.333 10.09 0.00 0.00 3.36
53 54 9.213799 CTTCTCTTCTTTGTATCTAAGCAACTT 57.786 33.333 0.00 0.00 0.00 2.66
54 55 7.333174 GCTTCTCTTCTTTGTATCTAAGCAACT 59.667 37.037 0.00 0.00 37.38 3.16
55 56 7.118390 TGCTTCTCTTCTTTGTATCTAAGCAAC 59.882 37.037 0.00 0.00 42.55 4.17
56 57 7.118390 GTGCTTCTCTTCTTTGTATCTAAGCAA 59.882 37.037 7.42 0.00 45.70 3.91
57 58 6.591834 GTGCTTCTCTTCTTTGTATCTAAGCA 59.408 38.462 0.00 0.00 43.08 3.91
58 59 6.816140 AGTGCTTCTCTTCTTTGTATCTAAGC 59.184 38.462 0.00 0.00 37.81 3.09
59 60 8.770438 AAGTGCTTCTCTTCTTTGTATCTAAG 57.230 34.615 0.00 0.00 0.00 2.18
60 61 9.209175 GAAAGTGCTTCTCTTCTTTGTATCTAA 57.791 33.333 0.00 0.00 31.56 2.10
61 62 8.367911 TGAAAGTGCTTCTCTTCTTTGTATCTA 58.632 33.333 0.00 0.00 34.86 1.98
62 63 7.220030 TGAAAGTGCTTCTCTTCTTTGTATCT 58.780 34.615 0.00 0.00 34.86 1.98
63 64 7.426929 TGAAAGTGCTTCTCTTCTTTGTATC 57.573 36.000 0.00 0.00 34.86 2.24
64 65 7.716998 TCTTGAAAGTGCTTCTCTTCTTTGTAT 59.283 33.333 0.00 0.00 34.86 2.29
65 66 7.047891 TCTTGAAAGTGCTTCTCTTCTTTGTA 58.952 34.615 0.00 0.00 34.86 2.41
66 67 5.882557 TCTTGAAAGTGCTTCTCTTCTTTGT 59.117 36.000 0.00 0.00 34.86 2.83
67 68 6.369059 TCTTGAAAGTGCTTCTCTTCTTTG 57.631 37.500 0.00 0.00 34.86 2.77
68 69 5.008514 GCTCTTGAAAGTGCTTCTCTTCTTT 59.991 40.000 9.30 0.00 41.10 2.52
69 70 4.514816 GCTCTTGAAAGTGCTTCTCTTCTT 59.485 41.667 9.30 0.00 41.10 2.52
70 71 4.064388 GCTCTTGAAAGTGCTTCTCTTCT 58.936 43.478 9.30 0.00 41.10 2.85
71 72 4.403015 GCTCTTGAAAGTGCTTCTCTTC 57.597 45.455 9.30 0.00 41.10 2.87
79 80 3.563390 AGTCTGAAAGCTCTTGAAAGTGC 59.437 43.478 8.66 8.66 43.75 4.40
80 81 6.219473 TCTAGTCTGAAAGCTCTTGAAAGTG 58.781 40.000 0.00 0.00 0.00 3.16
81 82 6.412362 TCTAGTCTGAAAGCTCTTGAAAGT 57.588 37.500 0.00 0.00 0.00 2.66
82 83 8.465999 TCTATCTAGTCTGAAAGCTCTTGAAAG 58.534 37.037 0.00 0.00 0.00 2.62
83 84 8.354711 TCTATCTAGTCTGAAAGCTCTTGAAA 57.645 34.615 0.00 0.00 0.00 2.69
84 85 7.946381 TCTATCTAGTCTGAAAGCTCTTGAA 57.054 36.000 0.00 0.00 0.00 2.69
85 86 7.998383 AGATCTATCTAGTCTGAAAGCTCTTGA 59.002 37.037 0.00 0.00 34.85 3.02
86 87 8.169977 AGATCTATCTAGTCTGAAAGCTCTTG 57.830 38.462 0.00 0.00 34.85 3.02
87 88 8.766994 AAGATCTATCTAGTCTGAAAGCTCTT 57.233 34.615 0.00 0.00 35.76 2.85
88 89 7.448469 GGAAGATCTATCTAGTCTGAAAGCTCT 59.552 40.741 0.00 0.00 35.76 4.09
89 90 7.230510 TGGAAGATCTATCTAGTCTGAAAGCTC 59.769 40.741 0.00 0.00 35.76 4.09
90 91 7.066142 TGGAAGATCTATCTAGTCTGAAAGCT 58.934 38.462 0.00 0.00 35.76 3.74
91 92 7.283625 TGGAAGATCTATCTAGTCTGAAAGC 57.716 40.000 0.00 0.00 35.76 3.51
92 93 7.867403 GCTTGGAAGATCTATCTAGTCTGAAAG 59.133 40.741 0.00 0.00 35.76 2.62
93 94 7.343057 TGCTTGGAAGATCTATCTAGTCTGAAA 59.657 37.037 0.00 0.00 35.76 2.69
94 95 6.836007 TGCTTGGAAGATCTATCTAGTCTGAA 59.164 38.462 0.00 0.00 35.76 3.02
95 96 6.264292 GTGCTTGGAAGATCTATCTAGTCTGA 59.736 42.308 0.00 0.00 35.76 3.27
96 97 6.040278 TGTGCTTGGAAGATCTATCTAGTCTG 59.960 42.308 0.00 0.00 35.76 3.51
97 98 6.132658 TGTGCTTGGAAGATCTATCTAGTCT 58.867 40.000 0.00 0.00 35.76 3.24
98 99 6.398234 TGTGCTTGGAAGATCTATCTAGTC 57.602 41.667 0.00 0.00 35.76 2.59
99 100 5.221422 GCTGTGCTTGGAAGATCTATCTAGT 60.221 44.000 0.00 0.00 35.76 2.57
100 101 5.221402 TGCTGTGCTTGGAAGATCTATCTAG 60.221 44.000 0.00 0.00 35.76 2.43
101 102 4.651045 TGCTGTGCTTGGAAGATCTATCTA 59.349 41.667 0.00 0.00 35.76 1.98
102 103 3.453717 TGCTGTGCTTGGAAGATCTATCT 59.546 43.478 0.00 0.00 39.22 1.98
103 104 3.801698 TGCTGTGCTTGGAAGATCTATC 58.198 45.455 0.00 0.00 0.00 2.08
104 105 3.806380 CTGCTGTGCTTGGAAGATCTAT 58.194 45.455 0.00 0.00 0.00 1.98
105 106 2.679059 GCTGCTGTGCTTGGAAGATCTA 60.679 50.000 0.00 0.00 0.00 1.98
106 107 1.949547 GCTGCTGTGCTTGGAAGATCT 60.950 52.381 0.00 0.00 0.00 2.75
107 108 0.450983 GCTGCTGTGCTTGGAAGATC 59.549 55.000 0.00 0.00 0.00 2.75
108 109 0.251033 TGCTGCTGTGCTTGGAAGAT 60.251 50.000 0.00 0.00 0.00 2.40
109 110 1.148949 TGCTGCTGTGCTTGGAAGA 59.851 52.632 0.00 0.00 0.00 2.87
110 111 1.170919 AGTGCTGCTGTGCTTGGAAG 61.171 55.000 0.00 0.00 0.00 3.46
111 112 0.752743 AAGTGCTGCTGTGCTTGGAA 60.753 50.000 0.00 0.00 0.00 3.53
112 113 1.152902 AAGTGCTGCTGTGCTTGGA 60.153 52.632 0.00 0.00 0.00 3.53
113 114 1.285023 GAAGTGCTGCTGTGCTTGG 59.715 57.895 0.00 0.00 0.00 3.61
114 115 0.596577 ATGAAGTGCTGCTGTGCTTG 59.403 50.000 0.00 0.00 0.00 4.01
115 116 0.879765 GATGAAGTGCTGCTGTGCTT 59.120 50.000 0.00 0.28 0.00 3.91
116 117 0.959372 GGATGAAGTGCTGCTGTGCT 60.959 55.000 0.00 0.00 0.00 4.40
117 118 1.239296 TGGATGAAGTGCTGCTGTGC 61.239 55.000 0.00 0.00 0.00 4.57
118 119 1.241165 TTGGATGAAGTGCTGCTGTG 58.759 50.000 0.00 0.00 0.00 3.66
119 120 1.610522 GTTTGGATGAAGTGCTGCTGT 59.389 47.619 0.00 0.00 0.00 4.40
120 121 1.610038 TGTTTGGATGAAGTGCTGCTG 59.390 47.619 0.00 0.00 0.00 4.41
121 122 1.985473 TGTTTGGATGAAGTGCTGCT 58.015 45.000 0.00 0.00 0.00 4.24
122 123 4.644103 ATATGTTTGGATGAAGTGCTGC 57.356 40.909 0.00 0.00 0.00 5.25
123 124 5.957798 ACAATATGTTTGGATGAAGTGCTG 58.042 37.500 0.00 0.00 0.00 4.41
124 125 6.594788 AACAATATGTTTGGATGAAGTGCT 57.405 33.333 0.00 0.00 37.26 4.40
162 163 8.935741 AGATAAATATTTAGAAACGGAGGGAGT 58.064 33.333 13.15 0.00 0.00 3.85
163 164 9.780186 AAGATAAATATTTAGAAACGGAGGGAG 57.220 33.333 13.15 0.00 0.00 4.30
190 191 9.567776 TGTGGTAGTTCATTTGAAATCTCTAAA 57.432 29.630 0.00 0.00 35.58 1.85
191 192 9.739276 ATGTGGTAGTTCATTTGAAATCTCTAA 57.261 29.630 0.00 0.00 35.58 2.10
193 194 9.911788 ATATGTGGTAGTTCATTTGAAATCTCT 57.088 29.630 0.00 0.00 35.58 3.10
195 196 8.830580 CGATATGTGGTAGTTCATTTGAAATCT 58.169 33.333 0.00 0.00 35.58 2.40
196 197 8.826710 TCGATATGTGGTAGTTCATTTGAAATC 58.173 33.333 0.00 0.00 35.58 2.17
197 198 8.612619 GTCGATATGTGGTAGTTCATTTGAAAT 58.387 33.333 0.00 0.00 35.58 2.17
198 199 7.201487 CGTCGATATGTGGTAGTTCATTTGAAA 60.201 37.037 0.00 0.00 35.58 2.69
199 200 6.254804 CGTCGATATGTGGTAGTTCATTTGAA 59.745 38.462 0.00 0.00 0.00 2.69
200 201 5.746721 CGTCGATATGTGGTAGTTCATTTGA 59.253 40.000 0.00 0.00 0.00 2.69
201 202 5.518847 ACGTCGATATGTGGTAGTTCATTTG 59.481 40.000 0.00 0.00 0.00 2.32
202 203 5.657474 ACGTCGATATGTGGTAGTTCATTT 58.343 37.500 0.00 0.00 0.00 2.32
203 204 5.258456 ACGTCGATATGTGGTAGTTCATT 57.742 39.130 0.00 0.00 0.00 2.57
204 205 4.913335 ACGTCGATATGTGGTAGTTCAT 57.087 40.909 0.00 0.00 0.00 2.57
205 206 7.677454 ATATACGTCGATATGTGGTAGTTCA 57.323 36.000 0.00 0.00 0.00 3.18
208 209 9.822185 TGTATATATACGTCGATATGTGGTAGT 57.178 33.333 16.29 0.00 36.06 2.73
239 240 9.453572 AGCAAAATGAATGAATCTACACTCTAA 57.546 29.630 0.00 0.00 0.00 2.10
240 241 9.453572 AAGCAAAATGAATGAATCTACACTCTA 57.546 29.630 0.00 0.00 0.00 2.43
241 242 7.934855 AGCAAAATGAATGAATCTACACTCT 57.065 32.000 0.00 0.00 0.00 3.24
242 243 7.427606 CGAAGCAAAATGAATGAATCTACACTC 59.572 37.037 0.00 0.00 0.00 3.51
243 244 7.094634 ACGAAGCAAAATGAATGAATCTACACT 60.095 33.333 0.00 0.00 0.00 3.55
244 245 7.023575 ACGAAGCAAAATGAATGAATCTACAC 58.976 34.615 0.00 0.00 0.00 2.90
245 246 7.144722 ACGAAGCAAAATGAATGAATCTACA 57.855 32.000 0.00 0.00 0.00 2.74
246 247 9.162793 CATACGAAGCAAAATGAATGAATCTAC 57.837 33.333 0.00 0.00 0.00 2.59
247 248 8.892723 ACATACGAAGCAAAATGAATGAATCTA 58.107 29.630 0.00 0.00 0.00 1.98
248 249 7.765307 ACATACGAAGCAAAATGAATGAATCT 58.235 30.769 0.00 0.00 0.00 2.40
249 250 7.975866 ACATACGAAGCAAAATGAATGAATC 57.024 32.000 0.00 0.00 0.00 2.52
250 251 8.677300 ACTACATACGAAGCAAAATGAATGAAT 58.323 29.630 0.00 0.00 0.00 2.57
251 252 8.039603 ACTACATACGAAGCAAAATGAATGAA 57.960 30.769 0.00 0.00 0.00 2.57
252 253 7.333174 TGACTACATACGAAGCAAAATGAATGA 59.667 33.333 0.00 0.00 0.00 2.57
253 254 7.426456 GTGACTACATACGAAGCAAAATGAATG 59.574 37.037 0.00 0.00 0.00 2.67
254 255 7.334421 AGTGACTACATACGAAGCAAAATGAAT 59.666 33.333 0.00 0.00 0.00 2.57
255 256 6.649141 AGTGACTACATACGAAGCAAAATGAA 59.351 34.615 0.00 0.00 0.00 2.57
256 257 6.163476 AGTGACTACATACGAAGCAAAATGA 58.837 36.000 0.00 0.00 0.00 2.57
257 258 6.408858 AGTGACTACATACGAAGCAAAATG 57.591 37.500 0.00 0.00 0.00 2.32
258 259 6.426937 ACAAGTGACTACATACGAAGCAAAAT 59.573 34.615 0.00 0.00 0.00 1.82
259 260 5.756347 ACAAGTGACTACATACGAAGCAAAA 59.244 36.000 0.00 0.00 0.00 2.44
260 261 5.294356 ACAAGTGACTACATACGAAGCAAA 58.706 37.500 0.00 0.00 0.00 3.68
261 262 4.878439 ACAAGTGACTACATACGAAGCAA 58.122 39.130 0.00 0.00 0.00 3.91
262 263 4.514781 ACAAGTGACTACATACGAAGCA 57.485 40.909 0.00 0.00 0.00 3.91
263 264 4.921515 TCAACAAGTGACTACATACGAAGC 59.078 41.667 0.00 0.00 0.00 3.86
264 265 7.402811 TTTCAACAAGTGACTACATACGAAG 57.597 36.000 0.00 0.00 35.39 3.79
265 266 7.956420 ATTTCAACAAGTGACTACATACGAA 57.044 32.000 0.00 0.00 35.39 3.85
266 267 7.956420 AATTTCAACAAGTGACTACATACGA 57.044 32.000 0.00 0.00 35.39 3.43
267 268 8.495949 AGAAATTTCAACAAGTGACTACATACG 58.504 33.333 19.99 0.00 35.39 3.06
270 271 9.778741 TCTAGAAATTTCAACAAGTGACTACAT 57.221 29.630 19.99 0.00 35.39 2.29
271 272 9.607988 TTCTAGAAATTTCAACAAGTGACTACA 57.392 29.630 19.99 0.00 35.39 2.74
274 275 9.396022 TCTTTCTAGAAATTTCAACAAGTGACT 57.604 29.630 18.02 0.00 35.39 3.41
297 298 9.780186 CTCCCTCCGTTTCTAAATATTTATCTT 57.220 33.333 8.34 0.00 0.00 2.40
298 299 8.935741 ACTCCCTCCGTTTCTAAATATTTATCT 58.064 33.333 8.34 0.00 0.00 1.98
302 303 9.916360 ATTTACTCCCTCCGTTTCTAAATATTT 57.084 29.630 5.89 5.89 0.00 1.40
304 305 9.993454 GTATTTACTCCCTCCGTTTCTAAATAT 57.007 33.333 0.00 0.00 0.00 1.28
305 306 8.424133 GGTATTTACTCCCTCCGTTTCTAAATA 58.576 37.037 0.00 0.00 0.00 1.40
306 307 7.092757 TGGTATTTACTCCCTCCGTTTCTAAAT 60.093 37.037 0.00 0.00 0.00 1.40
307 308 6.213195 TGGTATTTACTCCCTCCGTTTCTAAA 59.787 38.462 0.00 0.00 0.00 1.85
308 309 5.721000 TGGTATTTACTCCCTCCGTTTCTAA 59.279 40.000 0.00 0.00 0.00 2.10
309 310 5.271598 TGGTATTTACTCCCTCCGTTTCTA 58.728 41.667 0.00 0.00 0.00 2.10
310 311 4.098894 TGGTATTTACTCCCTCCGTTTCT 58.901 43.478 0.00 0.00 0.00 2.52
311 312 4.476628 TGGTATTTACTCCCTCCGTTTC 57.523 45.455 0.00 0.00 0.00 2.78
312 313 5.901276 TCTATGGTATTTACTCCCTCCGTTT 59.099 40.000 0.00 0.00 0.00 3.60
313 314 5.461327 TCTATGGTATTTACTCCCTCCGTT 58.539 41.667 0.00 0.00 0.00 4.44
314 315 5.070823 TCTATGGTATTTACTCCCTCCGT 57.929 43.478 0.00 0.00 0.00 4.69
315 316 5.279356 GGTTCTATGGTATTTACTCCCTCCG 60.279 48.000 0.00 0.00 0.00 4.63
316 317 5.605488 TGGTTCTATGGTATTTACTCCCTCC 59.395 44.000 0.00 0.00 0.00 4.30
317 318 6.742559 TGGTTCTATGGTATTTACTCCCTC 57.257 41.667 0.00 0.00 0.00 4.30
318 319 7.128883 ACAATGGTTCTATGGTATTTACTCCCT 59.871 37.037 0.00 0.00 0.00 4.20
319 320 7.287810 ACAATGGTTCTATGGTATTTACTCCC 58.712 38.462 0.00 0.00 0.00 4.30
320 321 8.747538 AACAATGGTTCTATGGTATTTACTCC 57.252 34.615 0.00 0.00 29.00 3.85
339 340 6.503589 TTACCCGAAAACCATAGAACAATG 57.496 37.500 0.00 0.00 0.00 2.82
340 341 7.527568 TTTTACCCGAAAACCATAGAACAAT 57.472 32.000 0.00 0.00 31.90 2.71
341 342 6.956202 TTTTACCCGAAAACCATAGAACAA 57.044 33.333 0.00 0.00 31.90 2.83
342 343 6.956202 TTTTTACCCGAAAACCATAGAACA 57.044 33.333 0.00 0.00 36.74 3.18
382 383 8.067784 CCGTGCTATTAATCGTTCATGTTAATT 58.932 33.333 0.00 0.00 32.19 1.40
383 384 7.225931 ACCGTGCTATTAATCGTTCATGTTAAT 59.774 33.333 0.00 0.00 33.81 1.40
384 385 6.535865 ACCGTGCTATTAATCGTTCATGTTAA 59.464 34.615 0.00 0.00 0.00 2.01
385 386 6.044046 ACCGTGCTATTAATCGTTCATGTTA 58.956 36.000 0.00 0.00 0.00 2.41
386 387 4.873827 ACCGTGCTATTAATCGTTCATGTT 59.126 37.500 0.00 0.00 0.00 2.71
387 388 4.439057 ACCGTGCTATTAATCGTTCATGT 58.561 39.130 0.00 0.00 0.00 3.21
388 389 5.006261 TCAACCGTGCTATTAATCGTTCATG 59.994 40.000 0.00 0.00 0.00 3.07
389 390 5.113383 TCAACCGTGCTATTAATCGTTCAT 58.887 37.500 0.00 0.00 0.00 2.57
390 391 4.496360 TCAACCGTGCTATTAATCGTTCA 58.504 39.130 0.00 0.00 0.00 3.18
391 392 5.459110 TTCAACCGTGCTATTAATCGTTC 57.541 39.130 0.00 0.00 0.00 3.95
392 393 5.866335 TTTCAACCGTGCTATTAATCGTT 57.134 34.783 0.00 0.00 0.00 3.85
393 394 5.410439 AGTTTTCAACCGTGCTATTAATCGT 59.590 36.000 0.00 0.00 0.00 3.73
394 395 5.864986 AGTTTTCAACCGTGCTATTAATCG 58.135 37.500 0.00 0.00 0.00 3.34
395 396 7.428472 GCTTAGTTTTCAACCGTGCTATTAATC 59.572 37.037 0.00 0.00 0.00 1.75
396 397 7.094549 TGCTTAGTTTTCAACCGTGCTATTAAT 60.095 33.333 0.00 0.00 0.00 1.40
397 398 6.205076 TGCTTAGTTTTCAACCGTGCTATTAA 59.795 34.615 0.00 0.00 0.00 1.40
398 399 5.701750 TGCTTAGTTTTCAACCGTGCTATTA 59.298 36.000 0.00 0.00 0.00 0.98
399 400 4.517453 TGCTTAGTTTTCAACCGTGCTATT 59.483 37.500 0.00 0.00 0.00 1.73
400 401 4.069304 TGCTTAGTTTTCAACCGTGCTAT 58.931 39.130 0.00 0.00 0.00 2.97
401 402 3.468770 TGCTTAGTTTTCAACCGTGCTA 58.531 40.909 0.00 0.00 0.00 3.49
402 403 2.294074 TGCTTAGTTTTCAACCGTGCT 58.706 42.857 0.00 0.00 0.00 4.40
403 404 2.766970 TGCTTAGTTTTCAACCGTGC 57.233 45.000 0.00 0.00 0.00 5.34
404 405 6.475402 AGAAAAATGCTTAGTTTTCAACCGTG 59.525 34.615 13.22 0.00 43.24 4.94
405 406 6.475402 CAGAAAAATGCTTAGTTTTCAACCGT 59.525 34.615 13.22 0.00 43.24 4.83
406 407 6.695278 TCAGAAAAATGCTTAGTTTTCAACCG 59.305 34.615 13.22 2.43 43.24 4.44
407 408 8.593492 ATCAGAAAAATGCTTAGTTTTCAACC 57.407 30.769 13.22 0.00 43.24 3.77
408 409 9.248291 TGATCAGAAAAATGCTTAGTTTTCAAC 57.752 29.630 13.22 4.74 43.24 3.18
409 410 9.814899 TTGATCAGAAAAATGCTTAGTTTTCAA 57.185 25.926 13.22 4.11 43.24 2.69
410 411 9.814899 TTTGATCAGAAAAATGCTTAGTTTTCA 57.185 25.926 13.22 0.00 43.24 2.69
445 446 9.350951 CCCCTCTTTCGGATTAAAGTAATTTAT 57.649 33.333 0.00 0.00 37.65 1.40
446 447 8.330993 ACCCCTCTTTCGGATTAAAGTAATTTA 58.669 33.333 0.00 0.00 37.65 1.40
447 448 7.179966 ACCCCTCTTTCGGATTAAAGTAATTT 58.820 34.615 0.00 0.00 37.65 1.82
448 449 6.728411 ACCCCTCTTTCGGATTAAAGTAATT 58.272 36.000 0.00 0.00 37.65 1.40
449 450 6.323210 ACCCCTCTTTCGGATTAAAGTAAT 57.677 37.500 0.00 0.00 37.65 1.89
450 451 5.767277 ACCCCTCTTTCGGATTAAAGTAA 57.233 39.130 0.00 0.00 37.65 2.24
451 452 5.767277 AACCCCTCTTTCGGATTAAAGTA 57.233 39.130 0.00 0.00 37.65 2.24
452 453 4.652679 AACCCCTCTTTCGGATTAAAGT 57.347 40.909 0.00 0.00 37.65 2.66
453 454 6.120220 ACATAACCCCTCTTTCGGATTAAAG 58.880 40.000 0.00 0.00 37.73 1.85
454 455 6.069705 ACATAACCCCTCTTTCGGATTAAA 57.930 37.500 0.00 0.00 0.00 1.52
455 456 5.397109 GGACATAACCCCTCTTTCGGATTAA 60.397 44.000 0.00 0.00 0.00 1.40
456 457 4.102054 GGACATAACCCCTCTTTCGGATTA 59.898 45.833 0.00 0.00 0.00 1.75
457 458 3.118000 GGACATAACCCCTCTTTCGGATT 60.118 47.826 0.00 0.00 0.00 3.01
458 459 2.438392 GGACATAACCCCTCTTTCGGAT 59.562 50.000 0.00 0.00 0.00 4.18
459 460 1.835531 GGACATAACCCCTCTTTCGGA 59.164 52.381 0.00 0.00 0.00 4.55
460 461 1.838077 AGGACATAACCCCTCTTTCGG 59.162 52.381 0.00 0.00 0.00 4.30
461 462 3.449737 TGTAGGACATAACCCCTCTTTCG 59.550 47.826 0.00 0.00 34.11 3.46
462 463 5.431179 TTGTAGGACATAACCCCTCTTTC 57.569 43.478 0.00 0.00 34.11 2.62
463 464 6.402981 AATTGTAGGACATAACCCCTCTTT 57.597 37.500 0.00 0.00 34.11 2.52
464 465 6.402981 AAATTGTAGGACATAACCCCTCTT 57.597 37.500 0.00 0.00 34.11 2.85
465 466 7.707467 ATAAATTGTAGGACATAACCCCTCT 57.293 36.000 0.00 0.00 34.11 3.69
466 467 7.172703 CGAATAAATTGTAGGACATAACCCCTC 59.827 40.741 0.00 0.00 34.11 4.30
467 468 6.996282 CGAATAAATTGTAGGACATAACCCCT 59.004 38.462 0.00 0.00 36.60 4.79
468 469 6.293790 GCGAATAAATTGTAGGACATAACCCC 60.294 42.308 0.00 0.00 0.00 4.95
469 470 6.261381 TGCGAATAAATTGTAGGACATAACCC 59.739 38.462 0.00 0.00 0.00 4.11
470 471 7.254227 TGCGAATAAATTGTAGGACATAACC 57.746 36.000 0.00 0.00 0.00 2.85
471 472 9.562583 TTTTGCGAATAAATTGTAGGACATAAC 57.437 29.630 0.00 0.00 0.00 1.89
472 473 9.562583 GTTTTGCGAATAAATTGTAGGACATAA 57.437 29.630 0.00 0.00 0.00 1.90
473 474 8.952278 AGTTTTGCGAATAAATTGTAGGACATA 58.048 29.630 0.00 0.00 0.00 2.29
474 475 7.826690 AGTTTTGCGAATAAATTGTAGGACAT 58.173 30.769 0.00 0.00 0.00 3.06
475 476 7.209471 AGTTTTGCGAATAAATTGTAGGACA 57.791 32.000 0.00 0.00 0.00 4.02
476 477 7.806014 TCAAGTTTTGCGAATAAATTGTAGGAC 59.194 33.333 6.65 0.00 0.00 3.85
477 478 7.877003 TCAAGTTTTGCGAATAAATTGTAGGA 58.123 30.769 6.65 0.00 0.00 2.94
478 479 8.687824 ATCAAGTTTTGCGAATAAATTGTAGG 57.312 30.769 6.65 0.00 0.00 3.18
491 492 3.120616 TCGACGTCTTATCAAGTTTTGCG 59.879 43.478 14.70 0.00 0.00 4.85
493 494 6.817396 TGATTCGACGTCTTATCAAGTTTTG 58.183 36.000 20.43 0.59 0.00 2.44
598 599 1.531149 CCTTGTCGTTTCGTCTGCAAT 59.469 47.619 0.00 0.00 0.00 3.56
632 633 3.056536 GGGATGATCGCAGCTGTCTATTA 60.057 47.826 16.64 3.96 0.00 0.98
640 641 2.107750 CACGGGATGATCGCAGCT 59.892 61.111 10.19 0.00 0.00 4.24
650 651 3.809013 GGGATGGCACCACGGGAT 61.809 66.667 8.11 0.00 0.00 3.85
678 679 0.827368 GGGTGGTTTTCCTGTTTGCA 59.173 50.000 0.00 0.00 41.38 4.08
685 686 4.295199 GCCCCGGGTGGTTTTCCT 62.295 66.667 21.85 0.00 41.38 3.36
735 737 0.389948 GCTGTCCCGTTTCGTCTGAT 60.390 55.000 0.00 0.00 0.00 2.90
736 738 1.006571 GCTGTCCCGTTTCGTCTGA 60.007 57.895 0.00 0.00 0.00 3.27
824 826 2.159043 GGAGGAATCATCGAGCAAGTGA 60.159 50.000 0.00 0.00 0.00 3.41
835 860 2.109799 CAGCGCGGGAGGAATCAT 59.890 61.111 8.83 0.00 0.00 2.45
836 861 4.838152 GCAGCGCGGGAGGAATCA 62.838 66.667 8.83 0.00 0.00 2.57
849 874 0.460284 ATATATACTGGCGCCGCAGC 60.460 55.000 23.90 0.00 0.00 5.25
851 876 1.819903 TGTATATATACTGGCGCCGCA 59.180 47.619 23.90 9.69 34.41 5.69
852 877 2.460918 CTGTATATATACTGGCGCCGC 58.539 52.381 23.90 0.00 34.41 6.53
853 878 2.223735 CCCTGTATATATACTGGCGCCG 60.224 54.545 30.00 18.98 45.58 6.46
855 880 2.431057 AGCCCTGTATATATACTGGCGC 59.569 50.000 30.36 30.12 46.71 6.53
857 882 3.491104 GCGAGCCCTGTATATATACTGGC 60.491 52.174 30.15 30.15 45.58 4.85
858 883 3.068307 GGCGAGCCCTGTATATATACTGG 59.932 52.174 29.08 29.08 46.13 4.00
859 884 3.699538 TGGCGAGCCCTGTATATATACTG 59.300 47.826 20.80 19.45 33.08 2.74
905 931 3.069443 CAGTTGGTTGGTTGGTTGCTTAT 59.931 43.478 0.00 0.00 0.00 1.73
906 932 2.428890 CAGTTGGTTGGTTGGTTGCTTA 59.571 45.455 0.00 0.00 0.00 3.09
907 933 1.206849 CAGTTGGTTGGTTGGTTGCTT 59.793 47.619 0.00 0.00 0.00 3.91
908 934 0.823460 CAGTTGGTTGGTTGGTTGCT 59.177 50.000 0.00 0.00 0.00 3.91
909 935 0.809636 GCAGTTGGTTGGTTGGTTGC 60.810 55.000 0.00 0.00 0.00 4.17
910 936 0.534412 TGCAGTTGGTTGGTTGGTTG 59.466 50.000 0.00 0.00 0.00 3.77
911 937 1.270907 TTGCAGTTGGTTGGTTGGTT 58.729 45.000 0.00 0.00 0.00 3.67
912 938 1.206849 CTTTGCAGTTGGTTGGTTGGT 59.793 47.619 0.00 0.00 0.00 3.67
913 939 1.938625 CTTTGCAGTTGGTTGGTTGG 58.061 50.000 0.00 0.00 0.00 3.77
938 964 2.949451 TCTTGATCTCTCGTTCCTGC 57.051 50.000 0.00 0.00 0.00 4.85
950 976 7.706179 ACTCAAAGAGAAAGATCGATCTTGATC 59.294 37.037 34.93 31.35 38.83 2.92
951 977 7.555087 ACTCAAAGAGAAAGATCGATCTTGAT 58.445 34.615 34.93 26.90 38.83 2.57
952 978 6.929625 ACTCAAAGAGAAAGATCGATCTTGA 58.070 36.000 34.93 25.72 38.83 3.02
953 979 7.201513 GGAACTCAAAGAGAAAGATCGATCTTG 60.202 40.741 34.93 23.40 38.83 3.02
960 986 3.935828 CCGGGAACTCAAAGAGAAAGATC 59.064 47.826 0.00 0.00 33.32 2.75
993 1022 2.437002 GCGGTCGCCATTAACCCA 60.437 61.111 3.73 0.00 34.56 4.51
1053 1089 6.198687 TCACTAATCAAGCAAAACTTTCGTG 58.801 36.000 0.00 0.00 36.04 4.35
1054 1090 6.371809 TCACTAATCAAGCAAAACTTTCGT 57.628 33.333 0.00 0.00 36.04 3.85
1064 1123 4.934001 CAGAGCTTCTTCACTAATCAAGCA 59.066 41.667 4.89 0.00 41.65 3.91
1072 1131 6.114187 TGAAATTCCAGAGCTTCTTCACTA 57.886 37.500 0.00 0.00 0.00 2.74
1098 1157 6.280855 AGAACCAAACCAATAATTAGCACC 57.719 37.500 0.00 0.00 0.00 5.01
1465 4426 6.461110 AGATTCCACCAAATTAATCAGCAG 57.539 37.500 0.00 0.00 32.04 4.24
1494 4458 3.657398 TTATGAGACGGAGGGAGTACA 57.343 47.619 0.00 0.00 0.00 2.90
1495 4459 7.828223 TCTTATATTATGAGACGGAGGGAGTAC 59.172 40.741 0.00 0.00 0.00 2.73
1496 4460 7.925622 TCTTATATTATGAGACGGAGGGAGTA 58.074 38.462 0.00 0.00 0.00 2.59
1497 4461 6.791371 TCTTATATTATGAGACGGAGGGAGT 58.209 40.000 0.00 0.00 0.00 3.85
1498 4462 6.183360 GCTCTTATATTATGAGACGGAGGGAG 60.183 46.154 0.00 0.00 33.20 4.30
1499 4463 5.652891 GCTCTTATATTATGAGACGGAGGGA 59.347 44.000 0.00 0.00 33.20 4.20
1500 4464 5.449314 CGCTCTTATATTATGAGACGGAGGG 60.449 48.000 0.00 0.00 33.20 4.30
1501 4465 5.124138 ACGCTCTTATATTATGAGACGGAGG 59.876 44.000 16.71 3.20 35.72 4.30
1502 4466 6.184580 ACGCTCTTATATTATGAGACGGAG 57.815 41.667 16.71 6.33 35.72 4.63
1503 4467 6.570672 AACGCTCTTATATTATGAGACGGA 57.429 37.500 16.71 0.00 35.72 4.69
1504 4468 7.639162 AAAACGCTCTTATATTATGAGACGG 57.361 36.000 16.71 7.11 35.72 4.79
1505 4469 8.752254 TCAAAAACGCTCTTATATTATGAGACG 58.248 33.333 13.57 13.57 36.53 4.18
1506 4470 9.851043 GTCAAAAACGCTCTTATATTATGAGAC 57.149 33.333 0.00 0.00 33.20 3.36
1507 4471 9.594478 TGTCAAAAACGCTCTTATATTATGAGA 57.406 29.630 0.00 0.00 33.20 3.27
1508 4472 9.638300 GTGTCAAAAACGCTCTTATATTATGAG 57.362 33.333 0.00 0.00 35.42 2.90
1509 4473 9.378551 AGTGTCAAAAACGCTCTTATATTATGA 57.621 29.630 0.00 0.00 45.69 2.15
1513 4477 8.997621 TCTAGTGTCAAAAACGCTCTTATATT 57.002 30.769 0.00 0.00 45.69 1.28
1514 4478 7.707035 CCTCTAGTGTCAAAAACGCTCTTATAT 59.293 37.037 0.00 0.00 45.69 0.86
1515 4479 7.033791 CCTCTAGTGTCAAAAACGCTCTTATA 58.966 38.462 0.00 0.00 45.69 0.98
1516 4480 5.869888 CCTCTAGTGTCAAAAACGCTCTTAT 59.130 40.000 0.00 0.00 45.69 1.73
1517 4481 5.227908 CCTCTAGTGTCAAAAACGCTCTTA 58.772 41.667 0.00 0.00 45.69 2.10
1518 4482 4.058817 CCTCTAGTGTCAAAAACGCTCTT 58.941 43.478 0.00 0.00 45.69 2.85
1519 4483 3.555168 CCCTCTAGTGTCAAAAACGCTCT 60.555 47.826 0.00 0.00 45.69 4.09
1520 4484 2.737252 CCCTCTAGTGTCAAAAACGCTC 59.263 50.000 0.00 0.00 45.69 5.03
1522 4486 2.737252 CTCCCTCTAGTGTCAAAAACGC 59.263 50.000 0.00 0.00 38.74 4.84
1523 4487 3.991367 ACTCCCTCTAGTGTCAAAAACG 58.009 45.455 0.00 0.00 0.00 3.60
1524 4488 5.850614 TGTACTCCCTCTAGTGTCAAAAAC 58.149 41.667 0.00 0.00 0.00 2.43
1525 4489 6.681729 ATGTACTCCCTCTAGTGTCAAAAA 57.318 37.500 0.00 0.00 0.00 1.94
1526 4490 6.681729 AATGTACTCCCTCTAGTGTCAAAA 57.318 37.500 0.00 0.00 0.00 2.44
1527 4491 7.973048 ATAATGTACTCCCTCTAGTGTCAAA 57.027 36.000 0.00 0.00 0.00 2.69
1528 4492 7.228108 CGTATAATGTACTCCCTCTAGTGTCAA 59.772 40.741 0.00 0.00 0.00 3.18
1529 4493 6.709397 CGTATAATGTACTCCCTCTAGTGTCA 59.291 42.308 0.00 0.00 0.00 3.58
1530 4494 6.149142 CCGTATAATGTACTCCCTCTAGTGTC 59.851 46.154 0.00 0.00 0.00 3.67
1531 4495 6.002704 CCGTATAATGTACTCCCTCTAGTGT 58.997 44.000 0.00 0.00 0.00 3.55
1532 4496 6.002704 ACCGTATAATGTACTCCCTCTAGTG 58.997 44.000 0.00 0.00 0.00 2.74
1533 4497 6.198237 ACCGTATAATGTACTCCCTCTAGT 57.802 41.667 0.00 0.00 0.00 2.57
1534 4498 7.521871 AAACCGTATAATGTACTCCCTCTAG 57.478 40.000 0.00 0.00 0.00 2.43
1535 4499 9.592196 AATAAACCGTATAATGTACTCCCTCTA 57.408 33.333 0.00 0.00 0.00 2.43
1536 4500 8.488308 AATAAACCGTATAATGTACTCCCTCT 57.512 34.615 0.00 0.00 0.00 3.69
1537 4501 8.362639 TGAATAAACCGTATAATGTACTCCCTC 58.637 37.037 0.00 0.00 0.00 4.30
1538 4502 8.253867 TGAATAAACCGTATAATGTACTCCCT 57.746 34.615 0.00 0.00 0.00 4.20
1539 4503 8.932791 CATGAATAAACCGTATAATGTACTCCC 58.067 37.037 0.00 0.00 0.00 4.30
1540 4504 9.485206 ACATGAATAAACCGTATAATGTACTCC 57.515 33.333 0.00 0.00 0.00 3.85
1639 4796 6.459298 GCTGTCCCATGATTCTTAAGATGTTG 60.459 42.308 5.89 2.59 0.00 3.33
1816 8635 5.585500 TGTAGTTATGTGCTTGTCGTTTC 57.415 39.130 0.00 0.00 0.00 2.78
1846 8665 9.512588 CTCTTATATTAGTTTACGGAGGGAGTA 57.487 37.037 0.00 0.00 0.00 2.59
1847 8666 8.003629 ACTCTTATATTAGTTTACGGAGGGAGT 58.996 37.037 0.00 0.00 0.00 3.85
1848 8667 8.298140 CACTCTTATATTAGTTTACGGAGGGAG 58.702 40.741 0.00 0.00 0.00 4.30
1849 8668 7.781693 ACACTCTTATATTAGTTTACGGAGGGA 59.218 37.037 0.00 0.00 0.00 4.20
1850 8669 7.949434 ACACTCTTATATTAGTTTACGGAGGG 58.051 38.462 0.00 0.00 0.00 4.30
1851 8670 9.813446 AAACACTCTTATATTAGTTTACGGAGG 57.187 33.333 0.00 0.00 0.00 4.30
1919 8738 9.802039 CTCTAAATAATCTAGTACTCCCTCTGT 57.198 37.037 0.00 0.00 0.00 3.41
1920 8739 8.736244 GCTCTAAATAATCTAGTACTCCCTCTG 58.264 40.741 0.00 0.00 0.00 3.35
1921 8740 7.891712 GGCTCTAAATAATCTAGTACTCCCTCT 59.108 40.741 0.00 0.00 0.00 3.69
1922 8741 7.670559 TGGCTCTAAATAATCTAGTACTCCCTC 59.329 40.741 0.00 0.00 0.00 4.30
1923 8742 7.452189 GTGGCTCTAAATAATCTAGTACTCCCT 59.548 40.741 0.00 0.00 0.00 4.20
1924 8743 7.452189 AGTGGCTCTAAATAATCTAGTACTCCC 59.548 40.741 0.00 0.00 0.00 4.30
1925 8744 8.411991 AGTGGCTCTAAATAATCTAGTACTCC 57.588 38.462 0.00 0.00 0.00 3.85
2209 9076 0.249615 CATCACCGATCATCACGCCT 60.250 55.000 0.00 0.00 0.00 5.52
2339 9338 3.234630 CTTTGTCGAGGGGTGCCGA 62.235 63.158 0.00 0.00 0.00 5.54
2340 9339 2.742372 CTTTGTCGAGGGGTGCCG 60.742 66.667 0.00 0.00 0.00 5.69
2408 9419 8.402472 TGAATACGATGTTTCATTGGGAAATAC 58.598 33.333 0.00 0.00 46.55 1.89
2463 9479 5.682212 GCACCAAGACCTGAAGAAAAATGTT 60.682 40.000 0.00 0.00 0.00 2.71
2578 9604 5.297776 GCAGCAGTACATTGTGGAAGATAAT 59.702 40.000 0.00 0.00 0.00 1.28
2598 9750 5.506982 GGAATAATTCTCATCAACCTGCAGC 60.507 44.000 8.66 0.00 0.00 5.25
2622 9774 8.939929 CATACAGCAATTAGTCATGGTTATAGG 58.060 37.037 0.00 0.00 0.00 2.57
2809 10020 6.449635 TTGACATGTTGCTAAAGTTCAGTT 57.550 33.333 0.00 0.00 0.00 3.16
2876 10095 0.827089 CAATGGCTTGGTGTGGTCCA 60.827 55.000 0.00 0.00 35.49 4.02
2893 10112 5.036117 AGAACTTAACAGACCTCTTGCAA 57.964 39.130 0.00 0.00 0.00 4.08
3326 10651 3.386078 GCTCCTTCCTCATGTACATCTCA 59.614 47.826 5.07 0.00 0.00 3.27
3404 10729 1.649664 CCTTGAGCATGAGGTCGAAG 58.350 55.000 0.00 0.00 45.10 3.79
3465 10790 0.392193 AGGGTGCGATGAAGAAGCTG 60.392 55.000 0.00 0.00 0.00 4.24
3578 10903 6.356977 CACAAAACACATACATGTTCGTTCTC 59.643 38.462 2.30 0.00 42.01 2.87
3695 11422 7.447594 AGAAAAGGAAGATACCGACTTAAACA 58.552 34.615 0.00 0.00 34.73 2.83
3699 11426 5.649395 TCGAGAAAAGGAAGATACCGACTTA 59.351 40.000 0.00 0.00 34.73 2.24
3702 11429 4.367386 TCGAGAAAAGGAAGATACCGAC 57.633 45.455 0.00 0.00 34.73 4.79
3756 11483 1.001815 CGCAAAACATCGGAAGTGGTT 60.002 47.619 0.00 0.00 0.00 3.67
3778 11505 4.318263 CGCATTCTGCAAACAAAAAGAAGG 60.318 41.667 0.00 0.00 45.36 3.46
3834 11566 0.035439 GTCCAAATTCAGAGGCCGGA 60.035 55.000 5.05 0.00 0.00 5.14
3845 11579 3.761218 TGGTTACATGCATCGTCCAAATT 59.239 39.130 0.00 0.00 0.00 1.82
3899 11633 7.387948 GTGGCTTCAGAATTACGGATGTATTAT 59.612 37.037 0.00 0.00 0.00 1.28
3938 11672 1.483415 TGGATAGGGGTAGCGACAAAC 59.517 52.381 0.00 0.00 0.00 2.93
3950 11684 5.615289 CACTCCTTCATTAAGTGGATAGGG 58.385 45.833 0.00 0.00 37.38 3.53
3962 11696 3.903090 TGGATTTTTGGCACTCCTTCATT 59.097 39.130 0.00 0.00 0.00 2.57
3970 11704 2.035632 TCGGTTTGGATTTTTGGCACT 58.964 42.857 0.00 0.00 0.00 4.40
4016 11752 2.742589 GCCTCCGGCTTTATATGTTAGC 59.257 50.000 0.00 0.00 46.69 3.09
4059 11796 3.941188 CGGTGTGTGCCCCAGACT 61.941 66.667 1.65 0.00 37.49 3.24
4274 12015 2.650322 GGGGTTTCATCTTCCGCATTA 58.350 47.619 0.00 0.00 34.89 1.90
4275 12016 1.474330 GGGGTTTCATCTTCCGCATT 58.526 50.000 0.00 0.00 34.89 3.56
4296 12037 0.620700 GGAAGGGCCTAGAGGTGGAA 60.621 60.000 6.41 0.00 37.57 3.53
4336 12077 1.695597 CTTCCTCCTGGGGGCATCT 60.696 63.158 8.08 0.00 35.33 2.90
4384 12126 0.179000 CAAGATCCGGTCTTCCAGGG 59.821 60.000 14.09 2.79 45.35 4.45
4387 12129 0.546747 ACCCAAGATCCGGTCTTCCA 60.547 55.000 14.09 0.00 45.35 3.53
4418 12162 2.427245 CGTCATCTCCCTCGGGCTT 61.427 63.158 0.00 0.00 34.68 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.