Multiple sequence alignment - TraesCS4D01G102900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G102900 chr4D 100.000 2562 0 0 1 2562 81918723 81916162 0.000000e+00 4732.0
1 TraesCS4D01G102900 chr4D 90.604 298 13 1 1839 2121 29449634 29449337 5.170000e-102 381.0
2 TraesCS4D01G102900 chr4D 90.816 294 12 1 1843 2121 294088042 294087749 1.860000e-101 379.0
3 TraesCS4D01G102900 chr4B 88.197 1525 84 39 1 1466 115556732 115555245 0.000000e+00 1731.0
4 TraesCS4D01G102900 chr4B 87.761 335 19 7 1461 1794 115555146 115554833 3.110000e-99 372.0
5 TraesCS4D01G102900 chr4B 85.152 330 27 11 2253 2562 115554268 115553941 4.110000e-83 318.0
6 TraesCS4D01G102900 chr4B 88.618 246 17 8 2325 2562 115552137 115551895 3.230000e-74 289.0
7 TraesCS4D01G102900 chr4B 86.250 80 2 1 1774 1844 115553729 115553650 7.600000e-11 78.7
8 TraesCS4D01G102900 chr4A 87.106 1047 55 26 803 1812 491713668 491712665 0.000000e+00 1112.0
9 TraesCS4D01G102900 chr4A 90.261 842 41 12 1 811 491715892 491715061 0.000000e+00 1062.0
10 TraesCS4D01G102900 chr4A 84.086 465 45 12 2124 2562 491712314 491711853 3.050000e-114 422.0
11 TraesCS4D01G102900 chr3D 91.497 294 10 1 1843 2121 327577543 327577250 8.590000e-105 390.0
12 TraesCS4D01G102900 chr3D 90.847 295 12 1 1842 2121 159510449 159510155 5.170000e-102 381.0
13 TraesCS4D01G102900 chr3D 90.816 294 12 1 1843 2121 422473452 422473745 1.860000e-101 379.0
14 TraesCS4D01G102900 chr3D 89.967 299 14 2 1839 2121 204944413 204944115 3.110000e-99 372.0
15 TraesCS4D01G102900 chr3D 89.933 298 13 8 1843 2124 592878487 592878783 4.030000e-98 368.0
16 TraesCS4D01G102900 chr3D 86.765 68 9 0 2054 2121 443903197 443903264 2.730000e-10 76.8
17 TraesCS4D01G102900 chr2D 95.436 241 11 0 1839 2079 11630488 11630728 4.000000e-103 385.0
18 TraesCS4D01G102900 chr7D 90.236 297 14 1 1840 2121 78693528 78693824 8.660000e-100 374.0
19 TraesCS4D01G102900 chr2B 88.179 313 21 2 1843 2139 47141441 47141129 2.420000e-95 359.0
20 TraesCS4D01G102900 chr5D 88.779 303 18 2 1843 2129 229909027 229909329 8.720000e-95 357.0
21 TraesCS4D01G102900 chr5A 87.171 304 22 2 1842 2130 92320028 92319727 1.900000e-86 329.0
22 TraesCS4D01G102900 chr1B 80.782 307 42 2 1843 2134 616319430 616319126 9.220000e-55 224.0
23 TraesCS4D01G102900 chr6A 84.795 171 10 2 1975 2129 85645826 85645656 9.490000e-35 158.0
24 TraesCS4D01G102900 chr6A 84.795 171 10 2 1975 2129 91750772 91750602 9.490000e-35 158.0
25 TraesCS4D01G102900 chr6A 82.558 172 13 3 1975 2129 95415189 95415018 4.450000e-28 135.0
26 TraesCS4D01G102900 chr2A 84.211 171 11 5 1975 2129 88467251 88467081 4.420000e-33 152.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G102900 chr4D 81916162 81918723 2561 True 4732.000000 4732 100.0000 1 2562 1 chr4D.!!$R2 2561
1 TraesCS4D01G102900 chr4B 115551895 115556732 4837 True 557.740000 1731 87.1956 1 2562 5 chr4B.!!$R1 2561
2 TraesCS4D01G102900 chr4A 491711853 491715892 4039 True 865.333333 1112 87.1510 1 2562 3 chr4A.!!$R1 2561

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
374 410 0.108186 TCTGCTGGGACGTGCTTATG 60.108 55.0 7.11 0.0 0.0 1.9 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1873 4927 0.032267 TGATCGTGGTGCACAACGTA 59.968 50.0 38.04 27.26 33.4 3.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
102 104 1.527380 GGGGTGCGGTTTCTGAACA 60.527 57.895 0.00 0.00 37.51 3.18
148 150 2.827322 TCCTTGGCAAAGTAGCGTAGTA 59.173 45.455 0.00 0.00 34.64 1.82
268 282 4.661222 TGGCCATGAGTTTCAGTTGAATA 58.339 39.130 0.00 0.00 33.54 1.75
272 286 6.088824 GCCATGAGTTTCAGTTGAATAAGTG 58.911 40.000 0.00 0.00 38.36 3.16
274 288 7.651808 CCATGAGTTTCAGTTGAATAAGTGTT 58.348 34.615 0.00 0.00 38.21 3.32
275 289 7.805071 CCATGAGTTTCAGTTGAATAAGTGTTC 59.195 37.037 0.00 0.00 38.21 3.18
278 292 7.768582 TGAGTTTCAGTTGAATAAGTGTTCTCA 59.231 33.333 0.00 0.00 38.21 3.27
279 293 8.147642 AGTTTCAGTTGAATAAGTGTTCTCAG 57.852 34.615 0.00 0.00 38.21 3.35
280 294 6.545504 TTCAGTTGAATAAGTGTTCTCAGC 57.454 37.500 0.00 0.00 38.21 4.26
351 371 1.680249 CCTTTCCTACTCTGCTTGGCC 60.680 57.143 0.00 0.00 0.00 5.36
361 397 3.123620 GCTTGGCCGACTCTGCTG 61.124 66.667 0.00 0.00 0.00 4.41
362 398 2.435586 CTTGGCCGACTCTGCTGG 60.436 66.667 0.00 0.00 0.00 4.85
363 399 3.965539 CTTGGCCGACTCTGCTGGG 62.966 68.421 0.00 0.00 0.00 4.45
365 401 4.459089 GGCCGACTCTGCTGGGAC 62.459 72.222 0.00 0.00 0.00 4.46
366 402 4.803426 GCCGACTCTGCTGGGACG 62.803 72.222 8.27 8.27 0.00 4.79
367 403 3.374402 CCGACTCTGCTGGGACGT 61.374 66.667 13.44 0.00 0.00 4.34
368 404 2.126307 CGACTCTGCTGGGACGTG 60.126 66.667 7.14 0.00 0.00 4.49
369 405 2.433318 GACTCTGCTGGGACGTGC 60.433 66.667 0.00 0.00 0.00 5.34
370 406 2.919856 ACTCTGCTGGGACGTGCT 60.920 61.111 7.11 0.00 0.00 4.40
371 407 2.345244 CTCTGCTGGGACGTGCTT 59.655 61.111 7.11 0.00 0.00 3.91
372 408 1.185618 ACTCTGCTGGGACGTGCTTA 61.186 55.000 7.11 0.00 0.00 3.09
373 409 0.176680 CTCTGCTGGGACGTGCTTAT 59.823 55.000 7.11 0.00 0.00 1.73
374 410 0.108186 TCTGCTGGGACGTGCTTATG 60.108 55.000 7.11 0.00 0.00 1.90
375 411 1.078497 TGCTGGGACGTGCTTATGG 60.078 57.895 7.11 0.00 0.00 2.74
376 412 1.078426 GCTGGGACGTGCTTATGGT 60.078 57.895 7.11 0.00 0.00 3.55
377 413 0.177141 GCTGGGACGTGCTTATGGTA 59.823 55.000 7.11 0.00 0.00 3.25
378 414 1.935933 CTGGGACGTGCTTATGGTAC 58.064 55.000 7.11 0.00 0.00 3.34
395 431 3.006110 TGGTACTTGGAACTGAAGGTACG 59.994 47.826 0.00 0.00 0.00 3.67
452 488 4.199432 TCTTCTGCTTCCTGAATCTGTC 57.801 45.455 0.00 0.00 0.00 3.51
511 549 4.102996 TGCTCTGGATGATTATGTTGGCTA 59.897 41.667 0.00 0.00 0.00 3.93
525 563 2.408271 TGGCTATTGCTCTCAACAGG 57.592 50.000 0.00 0.00 39.59 4.00
535 573 2.161211 GCTCTCAACAGGTTGCAGAATC 59.839 50.000 7.28 3.74 40.24 2.52
536 574 3.672808 CTCTCAACAGGTTGCAGAATCT 58.327 45.455 7.28 0.00 40.24 2.40
537 575 3.405831 TCTCAACAGGTTGCAGAATCTG 58.594 45.455 5.78 5.78 44.78 2.90
563 605 1.677966 CTCTGCCATGCTGCAAGGT 60.678 57.895 23.20 0.00 41.51 3.50
585 628 5.875359 GGTGAAAATGTGTAAAACCCAACAA 59.125 36.000 0.00 0.00 0.00 2.83
663 709 1.549203 GACCGTAGTTGGTAGACCCA 58.451 55.000 0.00 0.00 44.01 4.51
813 880 2.001361 ATCCGTCAGGTAAGTCCGCG 62.001 60.000 0.00 0.00 41.99 6.46
873 2340 2.805295 CGAACCAAGTCAGCCAAGTACA 60.805 50.000 0.00 0.00 0.00 2.90
981 2464 1.611673 CCCTCCCTATAAATGCAGCCG 60.612 57.143 0.00 0.00 0.00 5.52
986 2469 0.235665 CTATAAATGCAGCCGCCACG 59.764 55.000 0.00 0.00 37.32 4.94
1039 2522 2.222685 GCAAAGATCGAGCGAGAAACTG 60.223 50.000 0.00 0.00 0.00 3.16
1161 2650 2.125350 GAGGCCGTGGAGCAGAAG 60.125 66.667 0.00 0.00 0.00 2.85
1233 2722 2.422519 GCAGATGGGAGGTGTTGATCAT 60.423 50.000 0.00 0.00 0.00 2.45
1234 2723 3.474600 CAGATGGGAGGTGTTGATCATC 58.525 50.000 0.00 0.00 33.34 2.92
1235 2724 3.117745 AGATGGGAGGTGTTGATCATCA 58.882 45.455 2.22 2.22 34.98 3.07
1296 2788 0.322975 GGGCTCCGATAGTGATGCAT 59.677 55.000 0.00 0.00 0.00 3.96
1324 2816 1.611261 TTCCATTCTCGTCCCGGGT 60.611 57.895 22.86 0.00 0.00 5.28
1377 2874 4.384846 GTCACTGCAATTTTGATGAAGCTG 59.615 41.667 0.00 0.00 0.00 4.24
1408 2905 2.817396 GCCAGAGAGTTCGCCTGC 60.817 66.667 0.00 0.00 0.00 4.85
1491 3095 1.282157 CTCCCTCCGTCCCAAATTTCT 59.718 52.381 0.00 0.00 0.00 2.52
1497 3101 0.179225 CGTCCCAAATTTCTGCGACG 60.179 55.000 3.66 3.66 40.15 5.12
1541 3145 7.277981 CGGAGGGAGTATGTGTTAATATAATGC 59.722 40.741 0.00 0.00 0.00 3.56
1565 3169 7.068103 TGCCATAAATGTTCATTTCGGAATACT 59.932 33.333 20.83 0.68 0.00 2.12
1566 3170 7.379529 GCCATAAATGTTCATTTCGGAATACTG 59.620 37.037 20.83 7.94 0.00 2.74
1567 3171 8.405531 CCATAAATGTTCATTTCGGAATACTGT 58.594 33.333 13.03 0.00 0.00 3.55
1568 3172 9.787532 CATAAATGTTCATTTCGGAATACTGTT 57.212 29.630 13.03 0.00 0.00 3.16
1607 3211 3.976793 ATAACGCATGCTCATGGAAAG 57.023 42.857 17.13 0.00 39.16 2.62
1633 3237 2.093106 ACGGTCAACTAGCACTAGGAG 58.907 52.381 9.41 1.73 37.49 3.69
1634 3238 2.093106 CGGTCAACTAGCACTAGGAGT 58.907 52.381 9.41 0.00 37.49 3.85
1635 3239 2.097791 CGGTCAACTAGCACTAGGAGTC 59.902 54.545 9.41 0.00 37.49 3.36
1636 3240 3.358118 GGTCAACTAGCACTAGGAGTCT 58.642 50.000 9.41 0.00 37.49 3.24
1637 3241 4.525024 GGTCAACTAGCACTAGGAGTCTA 58.475 47.826 9.41 0.00 37.49 2.59
1638 3242 4.577283 GGTCAACTAGCACTAGGAGTCTAG 59.423 50.000 9.41 4.92 46.38 2.43
1639 3243 4.577283 GTCAACTAGCACTAGGAGTCTAGG 59.423 50.000 9.41 0.00 45.50 3.02
1640 3244 4.473922 TCAACTAGCACTAGGAGTCTAGGA 59.526 45.833 9.41 4.55 45.50 2.94
1652 3256 1.218196 AGTCTAGGACATCCCACGGAT 59.782 52.381 0.00 0.00 44.21 4.18
1654 3258 2.820787 GTCTAGGACATCCCACGGATAG 59.179 54.545 0.00 0.00 40.98 2.08
1655 3259 1.546476 CTAGGACATCCCACGGATAGC 59.454 57.143 0.00 0.00 40.98 2.97
1687 3296 5.824243 CGACAGTCGTTCAATCTAACTTT 57.176 39.130 15.21 0.00 34.72 2.66
1688 3297 6.922980 CGACAGTCGTTCAATCTAACTTTA 57.077 37.500 15.21 0.00 34.72 1.85
1692 3301 8.295569 ACAGTCGTTCAATCTAACTTTAAGAC 57.704 34.615 0.00 0.00 0.00 3.01
1844 4898 4.172505 TGCAAAATCGGCATGTTTGATAC 58.827 39.130 9.28 0.00 36.11 2.24
1845 4899 4.082300 TGCAAAATCGGCATGTTTGATACT 60.082 37.500 9.28 0.00 36.11 2.12
1846 4900 4.500477 GCAAAATCGGCATGTTTGATACTC 59.500 41.667 9.28 0.00 34.80 2.59
1847 4901 4.900635 AAATCGGCATGTTTGATACTCC 57.099 40.909 0.00 0.00 0.00 3.85
1848 4902 2.325583 TCGGCATGTTTGATACTCCC 57.674 50.000 0.00 0.00 0.00 4.30
1849 4903 1.837439 TCGGCATGTTTGATACTCCCT 59.163 47.619 0.00 0.00 0.00 4.20
1850 4904 2.158957 TCGGCATGTTTGATACTCCCTC 60.159 50.000 0.00 0.00 0.00 4.30
1851 4905 2.419990 CGGCATGTTTGATACTCCCTCA 60.420 50.000 0.00 0.00 0.00 3.86
1852 4906 3.209410 GGCATGTTTGATACTCCCTCAG 58.791 50.000 0.00 0.00 0.00 3.35
1853 4907 3.370953 GGCATGTTTGATACTCCCTCAGT 60.371 47.826 0.00 0.00 39.41 3.41
1854 4908 3.873952 GCATGTTTGATACTCCCTCAGTC 59.126 47.826 0.00 0.00 36.43 3.51
1855 4909 4.383552 GCATGTTTGATACTCCCTCAGTCT 60.384 45.833 0.00 0.00 36.43 3.24
1856 4910 5.163405 GCATGTTTGATACTCCCTCAGTCTA 60.163 44.000 0.00 0.00 36.43 2.59
1857 4911 6.511416 CATGTTTGATACTCCCTCAGTCTAG 58.489 44.000 0.00 0.00 36.43 2.43
1858 4912 4.956700 TGTTTGATACTCCCTCAGTCTAGG 59.043 45.833 0.00 0.00 36.43 3.02
1859 4913 4.883021 TTGATACTCCCTCAGTCTAGGT 57.117 45.455 0.00 0.00 36.43 3.08
1860 4914 4.171878 TGATACTCCCTCAGTCTAGGTG 57.828 50.000 0.00 0.00 36.43 4.00
1861 4915 3.528078 TGATACTCCCTCAGTCTAGGTGT 59.472 47.826 0.00 0.00 36.43 4.16
1862 4916 2.223803 ACTCCCTCAGTCTAGGTGTG 57.776 55.000 0.00 0.00 34.56 3.82
1863 4917 1.429687 ACTCCCTCAGTCTAGGTGTGT 59.570 52.381 0.00 0.00 34.56 3.72
1864 4918 2.648304 ACTCCCTCAGTCTAGGTGTGTA 59.352 50.000 0.00 0.00 34.56 2.90
1865 4919 3.075582 ACTCCCTCAGTCTAGGTGTGTAA 59.924 47.826 0.00 0.00 34.56 2.41
1866 4920 3.697045 CTCCCTCAGTCTAGGTGTGTAAG 59.303 52.174 0.00 0.00 34.56 2.34
1867 4921 3.075582 TCCCTCAGTCTAGGTGTGTAAGT 59.924 47.826 0.00 0.00 34.56 2.24
1868 4922 3.444388 CCCTCAGTCTAGGTGTGTAAGTC 59.556 52.174 0.00 0.00 34.56 3.01
1869 4923 4.079970 CCTCAGTCTAGGTGTGTAAGTCA 58.920 47.826 0.00 0.00 31.46 3.41
1870 4924 4.707448 CCTCAGTCTAGGTGTGTAAGTCAT 59.293 45.833 0.00 0.00 31.46 3.06
1871 4925 5.163602 CCTCAGTCTAGGTGTGTAAGTCATC 60.164 48.000 0.00 0.00 31.46 2.92
1872 4926 5.571285 TCAGTCTAGGTGTGTAAGTCATCT 58.429 41.667 0.00 0.00 0.00 2.90
1873 4927 6.010850 TCAGTCTAGGTGTGTAAGTCATCTT 58.989 40.000 0.00 0.00 37.65 2.40
1874 4928 7.173032 TCAGTCTAGGTGTGTAAGTCATCTTA 58.827 38.462 0.00 0.00 35.36 2.10
1884 4938 4.942765 GTAAGTCATCTTACGTTGTGCAC 58.057 43.478 10.75 10.75 43.95 4.57
1885 4939 2.413837 AGTCATCTTACGTTGTGCACC 58.586 47.619 15.69 0.00 0.00 5.01
1886 4940 2.139917 GTCATCTTACGTTGTGCACCA 58.860 47.619 15.69 0.00 0.00 4.17
1887 4941 2.096417 GTCATCTTACGTTGTGCACCAC 60.096 50.000 15.69 13.12 34.56 4.16
1888 4942 1.136363 CATCTTACGTTGTGCACCACG 60.136 52.381 33.95 33.95 37.14 4.94
1889 4943 0.102663 TCTTACGTTGTGCACCACGA 59.897 50.000 39.73 24.57 37.14 4.35
1890 4944 1.144969 CTTACGTTGTGCACCACGAT 58.855 50.000 39.73 27.75 37.14 3.73
1891 4945 1.126113 CTTACGTTGTGCACCACGATC 59.874 52.381 39.73 11.01 37.14 3.69
1892 4946 0.032267 TACGTTGTGCACCACGATCA 59.968 50.000 39.73 24.76 37.14 2.92
1893 4947 0.812014 ACGTTGTGCACCACGATCAA 60.812 50.000 39.73 14.29 37.14 2.57
1894 4948 0.110688 CGTTGTGCACCACGATCAAG 60.111 55.000 32.90 7.24 37.14 3.02
1895 4949 0.238289 GTTGTGCACCACGATCAAGG 59.762 55.000 15.69 0.00 37.14 3.61
1896 4950 1.514678 TTGTGCACCACGATCAAGGC 61.515 55.000 15.69 0.00 37.14 4.35
1897 4951 2.741985 TGCACCACGATCAAGGCG 60.742 61.111 0.00 0.00 0.00 5.52
1898 4952 3.499737 GCACCACGATCAAGGCGG 61.500 66.667 0.00 0.00 0.00 6.13
1899 4953 2.264480 CACCACGATCAAGGCGGA 59.736 61.111 0.00 0.00 0.00 5.54
1900 4954 1.375396 CACCACGATCAAGGCGGAA 60.375 57.895 0.00 0.00 0.00 4.30
1901 4955 0.953471 CACCACGATCAAGGCGGAAA 60.953 55.000 0.00 0.00 0.00 3.13
1902 4956 0.673644 ACCACGATCAAGGCGGAAAG 60.674 55.000 0.00 0.00 0.00 2.62
1903 4957 1.369091 CCACGATCAAGGCGGAAAGG 61.369 60.000 0.00 0.00 0.00 3.11
1904 4958 0.391130 CACGATCAAGGCGGAAAGGA 60.391 55.000 0.00 0.00 0.00 3.36
1905 4959 0.323629 ACGATCAAGGCGGAAAGGAA 59.676 50.000 0.00 0.00 0.00 3.36
1906 4960 1.271163 ACGATCAAGGCGGAAAGGAAA 60.271 47.619 0.00 0.00 0.00 3.13
1907 4961 1.810151 CGATCAAGGCGGAAAGGAAAA 59.190 47.619 0.00 0.00 0.00 2.29
1908 4962 2.423538 CGATCAAGGCGGAAAGGAAAAT 59.576 45.455 0.00 0.00 0.00 1.82
1909 4963 3.731867 CGATCAAGGCGGAAAGGAAAATG 60.732 47.826 0.00 0.00 0.00 2.32
1910 4964 2.870175 TCAAGGCGGAAAGGAAAATGA 58.130 42.857 0.00 0.00 0.00 2.57
1911 4965 2.819608 TCAAGGCGGAAAGGAAAATGAG 59.180 45.455 0.00 0.00 0.00 2.90
1912 4966 2.819608 CAAGGCGGAAAGGAAAATGAGA 59.180 45.455 0.00 0.00 0.00 3.27
1913 4967 3.154827 AGGCGGAAAGGAAAATGAGAA 57.845 42.857 0.00 0.00 0.00 2.87
1914 4968 3.496331 AGGCGGAAAGGAAAATGAGAAA 58.504 40.909 0.00 0.00 0.00 2.52
1915 4969 3.895041 AGGCGGAAAGGAAAATGAGAAAA 59.105 39.130 0.00 0.00 0.00 2.29
1916 4970 3.987868 GGCGGAAAGGAAAATGAGAAAAC 59.012 43.478 0.00 0.00 0.00 2.43
1917 4971 4.262036 GGCGGAAAGGAAAATGAGAAAACT 60.262 41.667 0.00 0.00 0.00 2.66
1918 4972 5.289595 GCGGAAAGGAAAATGAGAAAACTT 58.710 37.500 0.00 0.00 0.00 2.66
1919 4973 6.443792 GCGGAAAGGAAAATGAGAAAACTTA 58.556 36.000 0.00 0.00 0.00 2.24
1920 4974 6.921307 GCGGAAAGGAAAATGAGAAAACTTAA 59.079 34.615 0.00 0.00 0.00 1.85
1921 4975 7.598869 GCGGAAAGGAAAATGAGAAAACTTAAT 59.401 33.333 0.00 0.00 0.00 1.40
1922 4976 8.915654 CGGAAAGGAAAATGAGAAAACTTAATG 58.084 33.333 0.00 0.00 0.00 1.90
1923 4977 9.764363 GGAAAGGAAAATGAGAAAACTTAATGT 57.236 29.630 0.00 0.00 0.00 2.71
1932 4986 9.822185 AATGAGAAAACTTAATGTCTTTTTGCT 57.178 25.926 0.00 0.00 0.00 3.91
1966 5020 7.997107 CATTGCATGCAATAAACTAATCACT 57.003 32.000 38.08 15.85 43.92 3.41
1967 5021 7.837505 CATTGCATGCAATAAACTAATCACTG 58.162 34.615 38.08 22.42 43.92 3.66
1968 5022 5.342433 TGCATGCAATAAACTAATCACTGC 58.658 37.500 20.30 0.00 0.00 4.40
1969 5023 5.105837 TGCATGCAATAAACTAATCACTGCA 60.106 36.000 20.30 0.00 42.02 4.41
1970 5024 5.981315 GCATGCAATAAACTAATCACTGCAT 59.019 36.000 14.21 0.98 46.86 3.96
1971 5025 7.140705 GCATGCAATAAACTAATCACTGCATA 58.859 34.615 14.21 0.00 44.79 3.14
1972 5026 7.811236 GCATGCAATAAACTAATCACTGCATAT 59.189 33.333 14.21 0.00 44.79 1.78
1973 5027 9.338291 CATGCAATAAACTAATCACTGCATATC 57.662 33.333 6.34 0.00 44.79 1.63
1974 5028 8.449251 TGCAATAAACTAATCACTGCATATCA 57.551 30.769 0.00 0.00 33.65 2.15
1975 5029 9.070179 TGCAATAAACTAATCACTGCATATCAT 57.930 29.630 0.00 0.00 33.65 2.45
1976 5030 9.338291 GCAATAAACTAATCACTGCATATCATG 57.662 33.333 0.00 0.00 0.00 3.07
1981 5035 7.268199 ACTAATCACTGCATATCATGTTTGG 57.732 36.000 0.00 0.00 0.00 3.28
1982 5036 6.830324 ACTAATCACTGCATATCATGTTTGGT 59.170 34.615 0.00 0.00 0.00 3.67
1983 5037 7.992608 ACTAATCACTGCATATCATGTTTGGTA 59.007 33.333 0.00 0.00 0.00 3.25
1984 5038 6.872628 ATCACTGCATATCATGTTTGGTAG 57.127 37.500 0.00 0.00 0.00 3.18
1985 5039 5.744171 TCACTGCATATCATGTTTGGTAGT 58.256 37.500 0.00 0.00 0.00 2.73
1986 5040 5.817296 TCACTGCATATCATGTTTGGTAGTC 59.183 40.000 0.00 0.00 0.00 2.59
1987 5041 5.819379 CACTGCATATCATGTTTGGTAGTCT 59.181 40.000 0.00 0.00 0.00 3.24
1988 5042 6.018425 CACTGCATATCATGTTTGGTAGTCTC 60.018 42.308 0.00 0.00 0.00 3.36
1989 5043 5.988287 TGCATATCATGTTTGGTAGTCTCA 58.012 37.500 0.00 0.00 0.00 3.27
1990 5044 6.413892 TGCATATCATGTTTGGTAGTCTCAA 58.586 36.000 0.00 0.00 0.00 3.02
1991 5045 6.539826 TGCATATCATGTTTGGTAGTCTCAAG 59.460 38.462 0.00 0.00 0.00 3.02
1992 5046 6.540189 GCATATCATGTTTGGTAGTCTCAAGT 59.460 38.462 0.00 0.00 0.00 3.16
1993 5047 7.254590 GCATATCATGTTTGGTAGTCTCAAGTC 60.255 40.741 0.00 0.00 0.00 3.01
1994 5048 5.545063 TCATGTTTGGTAGTCTCAAGTCA 57.455 39.130 0.00 0.00 0.00 3.41
1995 5049 6.114187 TCATGTTTGGTAGTCTCAAGTCAT 57.886 37.500 0.00 0.00 0.00 3.06
1996 5050 6.533730 TCATGTTTGGTAGTCTCAAGTCATT 58.466 36.000 0.00 0.00 0.00 2.57
1997 5051 6.427853 TCATGTTTGGTAGTCTCAAGTCATTG 59.572 38.462 0.00 0.00 37.80 2.82
1998 5052 5.924356 TGTTTGGTAGTCTCAAGTCATTGA 58.076 37.500 0.00 0.00 43.20 2.57
1999 5053 6.353323 TGTTTGGTAGTCTCAAGTCATTGAA 58.647 36.000 0.00 0.00 44.68 2.69
2000 5054 6.826231 TGTTTGGTAGTCTCAAGTCATTGAAA 59.174 34.615 0.00 0.00 44.68 2.69
2001 5055 7.012327 TGTTTGGTAGTCTCAAGTCATTGAAAG 59.988 37.037 0.00 0.00 44.68 2.62
2002 5056 4.997395 TGGTAGTCTCAAGTCATTGAAAGC 59.003 41.667 0.00 0.00 44.68 3.51
2003 5057 4.997395 GGTAGTCTCAAGTCATTGAAAGCA 59.003 41.667 0.00 0.00 44.68 3.91
2004 5058 5.645497 GGTAGTCTCAAGTCATTGAAAGCAT 59.355 40.000 0.00 0.00 44.68 3.79
2005 5059 5.624344 AGTCTCAAGTCATTGAAAGCATG 57.376 39.130 0.00 0.00 44.68 4.06
2006 5060 4.082895 AGTCTCAAGTCATTGAAAGCATGC 60.083 41.667 10.51 10.51 44.68 4.06
2007 5061 3.822167 TCTCAAGTCATTGAAAGCATGCA 59.178 39.130 21.98 0.00 44.68 3.96
2008 5062 3.904571 TCAAGTCATTGAAAGCATGCAC 58.095 40.909 21.98 11.31 42.47 4.57
2009 5063 2.624316 AGTCATTGAAAGCATGCACG 57.376 45.000 21.98 0.00 0.00 5.34
2010 5064 1.200716 AGTCATTGAAAGCATGCACGG 59.799 47.619 21.98 1.85 0.00 4.94
2011 5065 0.109179 TCATTGAAAGCATGCACGGC 60.109 50.000 21.98 6.69 0.00 5.68
2012 5066 1.079875 CATTGAAAGCATGCACGGCC 61.080 55.000 21.98 4.60 0.00 6.13
2013 5067 2.229690 ATTGAAAGCATGCACGGCCC 62.230 55.000 21.98 3.14 0.00 5.80
2014 5068 3.372730 GAAAGCATGCACGGCCCA 61.373 61.111 21.98 0.00 0.00 5.36
2015 5069 3.631487 GAAAGCATGCACGGCCCAC 62.631 63.158 21.98 0.00 0.00 4.61
2016 5070 4.972733 AAGCATGCACGGCCCACA 62.973 61.111 21.98 0.00 0.00 4.17
2017 5071 4.746309 AGCATGCACGGCCCACAT 62.746 61.111 21.98 0.00 0.00 3.21
2018 5072 4.197498 GCATGCACGGCCCACATC 62.197 66.667 14.21 0.00 0.00 3.06
2019 5073 2.438975 CATGCACGGCCCACATCT 60.439 61.111 0.00 0.00 0.00 2.90
2020 5074 2.124570 ATGCACGGCCCACATCTC 60.125 61.111 0.00 0.00 0.00 2.75
2021 5075 2.673200 ATGCACGGCCCACATCTCT 61.673 57.895 0.00 0.00 0.00 3.10
2022 5076 2.045926 GCACGGCCCACATCTCTT 60.046 61.111 0.00 0.00 0.00 2.85
2023 5077 1.220749 GCACGGCCCACATCTCTTA 59.779 57.895 0.00 0.00 0.00 2.10
2024 5078 0.179045 GCACGGCCCACATCTCTTAT 60.179 55.000 0.00 0.00 0.00 1.73
2025 5079 1.747206 GCACGGCCCACATCTCTTATT 60.747 52.381 0.00 0.00 0.00 1.40
2026 5080 1.942657 CACGGCCCACATCTCTTATTG 59.057 52.381 0.00 0.00 0.00 1.90
2027 5081 1.134098 ACGGCCCACATCTCTTATTGG 60.134 52.381 0.00 0.00 0.00 3.16
2028 5082 1.134098 CGGCCCACATCTCTTATTGGT 60.134 52.381 0.00 0.00 0.00 3.67
2029 5083 2.683742 CGGCCCACATCTCTTATTGGTT 60.684 50.000 0.00 0.00 0.00 3.67
2030 5084 2.689983 GGCCCACATCTCTTATTGGTTG 59.310 50.000 0.00 0.00 0.00 3.77
2031 5085 3.620488 GCCCACATCTCTTATTGGTTGA 58.380 45.455 0.00 0.00 0.00 3.18
2032 5086 4.210331 GCCCACATCTCTTATTGGTTGAT 58.790 43.478 0.00 0.00 0.00 2.57
2033 5087 5.376625 GCCCACATCTCTTATTGGTTGATA 58.623 41.667 0.00 0.00 0.00 2.15
2034 5088 6.006449 GCCCACATCTCTTATTGGTTGATAT 58.994 40.000 0.00 0.00 0.00 1.63
2035 5089 6.072286 GCCCACATCTCTTATTGGTTGATATG 60.072 42.308 0.00 0.00 0.00 1.78
2036 5090 7.000472 CCCACATCTCTTATTGGTTGATATGT 59.000 38.462 0.00 0.00 30.96 2.29
2037 5091 7.173907 CCCACATCTCTTATTGGTTGATATGTC 59.826 40.741 0.00 0.00 29.24 3.06
2038 5092 7.716560 CCACATCTCTTATTGGTTGATATGTCA 59.283 37.037 0.00 0.00 29.24 3.58
2039 5093 9.281371 CACATCTCTTATTGGTTGATATGTCAT 57.719 33.333 0.00 0.00 33.56 3.06
2058 5112 7.452880 TGTCATAAAACAAGAAATGAGGAGG 57.547 36.000 0.00 0.00 0.00 4.30
2059 5113 6.434028 TGTCATAAAACAAGAAATGAGGAGGG 59.566 38.462 0.00 0.00 0.00 4.30
2060 5114 6.659242 GTCATAAAACAAGAAATGAGGAGGGA 59.341 38.462 0.00 0.00 0.00 4.20
2061 5115 6.886459 TCATAAAACAAGAAATGAGGAGGGAG 59.114 38.462 0.00 0.00 0.00 4.30
2062 5116 4.731313 AAACAAGAAATGAGGAGGGAGT 57.269 40.909 0.00 0.00 0.00 3.85
2063 5117 4.731313 AACAAGAAATGAGGAGGGAGTT 57.269 40.909 0.00 0.00 0.00 3.01
2064 5118 5.843019 AACAAGAAATGAGGAGGGAGTTA 57.157 39.130 0.00 0.00 0.00 2.24
2065 5119 5.843019 ACAAGAAATGAGGAGGGAGTTAA 57.157 39.130 0.00 0.00 0.00 2.01
2066 5120 6.394345 ACAAGAAATGAGGAGGGAGTTAAT 57.606 37.500 0.00 0.00 0.00 1.40
2067 5121 6.183347 ACAAGAAATGAGGAGGGAGTTAATG 58.817 40.000 0.00 0.00 0.00 1.90
2068 5122 6.183347 CAAGAAATGAGGAGGGAGTTAATGT 58.817 40.000 0.00 0.00 0.00 2.71
2069 5123 7.037586 ACAAGAAATGAGGAGGGAGTTAATGTA 60.038 37.037 0.00 0.00 0.00 2.29
2070 5124 6.890293 AGAAATGAGGAGGGAGTTAATGTAC 58.110 40.000 0.00 0.00 0.00 2.90
2071 5125 5.632034 AATGAGGAGGGAGTTAATGTACC 57.368 43.478 0.00 0.00 0.00 3.34
2072 5126 3.028850 TGAGGAGGGAGTTAATGTACCG 58.971 50.000 0.00 0.00 0.00 4.02
2073 5127 3.029570 GAGGAGGGAGTTAATGTACCGT 58.970 50.000 0.00 0.00 0.00 4.83
2074 5128 2.764572 AGGAGGGAGTTAATGTACCGTG 59.235 50.000 0.00 0.00 0.00 4.94
2075 5129 2.547826 GAGGGAGTTAATGTACCGTGC 58.452 52.381 0.00 0.00 0.00 5.34
2076 5130 1.208776 AGGGAGTTAATGTACCGTGCC 59.791 52.381 0.00 0.00 0.00 5.01
2077 5131 1.208776 GGGAGTTAATGTACCGTGCCT 59.791 52.381 0.00 0.00 0.00 4.75
2078 5132 2.431782 GGGAGTTAATGTACCGTGCCTA 59.568 50.000 0.00 0.00 0.00 3.93
2079 5133 3.070590 GGGAGTTAATGTACCGTGCCTAT 59.929 47.826 0.00 0.00 0.00 2.57
2080 5134 4.443881 GGGAGTTAATGTACCGTGCCTATT 60.444 45.833 0.00 0.00 0.00 1.73
2081 5135 5.121105 GGAGTTAATGTACCGTGCCTATTT 58.879 41.667 0.00 0.00 0.00 1.40
2082 5136 5.007332 GGAGTTAATGTACCGTGCCTATTTG 59.993 44.000 0.00 0.00 0.00 2.32
2083 5137 4.879545 AGTTAATGTACCGTGCCTATTTGG 59.120 41.667 0.00 0.00 39.35 3.28
2084 5138 3.359695 AATGTACCGTGCCTATTTGGT 57.640 42.857 0.00 0.00 38.35 3.67
2085 5139 2.863132 TGTACCGTGCCTATTTGGTT 57.137 45.000 0.00 0.00 38.35 3.67
2086 5140 3.143211 TGTACCGTGCCTATTTGGTTT 57.857 42.857 0.00 0.00 38.35 3.27
2087 5141 3.488363 TGTACCGTGCCTATTTGGTTTT 58.512 40.909 0.00 0.00 38.35 2.43
2088 5142 3.502979 TGTACCGTGCCTATTTGGTTTTC 59.497 43.478 0.00 0.00 38.35 2.29
2089 5143 1.538075 ACCGTGCCTATTTGGTTTTCG 59.462 47.619 0.00 0.00 38.35 3.46
2090 5144 1.538075 CCGTGCCTATTTGGTTTTCGT 59.462 47.619 0.00 0.00 38.35 3.85
2091 5145 2.743126 CCGTGCCTATTTGGTTTTCGTA 59.257 45.455 0.00 0.00 38.35 3.43
2092 5146 3.188873 CCGTGCCTATTTGGTTTTCGTAA 59.811 43.478 0.00 0.00 38.35 3.18
2093 5147 4.399978 CGTGCCTATTTGGTTTTCGTAAG 58.600 43.478 0.00 0.00 38.35 2.34
2094 5148 4.670735 CGTGCCTATTTGGTTTTCGTAAGG 60.671 45.833 0.00 0.00 38.35 2.69
2095 5149 4.216902 GTGCCTATTTGGTTTTCGTAAGGT 59.783 41.667 0.00 0.00 38.35 3.50
2096 5150 4.216687 TGCCTATTTGGTTTTCGTAAGGTG 59.783 41.667 0.00 0.00 38.35 4.00
2097 5151 4.456566 GCCTATTTGGTTTTCGTAAGGTGA 59.543 41.667 0.00 0.00 38.35 4.02
2098 5152 5.618418 GCCTATTTGGTTTTCGTAAGGTGAC 60.618 44.000 0.00 0.00 38.35 3.67
2099 5153 7.735295 GCCTATTTGGTTTTCGTAAGGTGACT 61.735 42.308 0.00 0.00 39.88 3.41
2100 5154 9.123955 GCCTATTTGGTTTTCGTAAGGTGACTT 62.124 40.741 0.00 0.00 45.84 3.01
2115 5169 3.144657 TGACTTACACACCTAGACGGA 57.855 47.619 0.00 0.00 36.31 4.69
2116 5170 3.079578 TGACTTACACACCTAGACGGAG 58.920 50.000 0.00 0.00 36.31 4.63
2117 5171 2.422832 GACTTACACACCTAGACGGAGG 59.577 54.545 0.00 0.00 42.89 4.30
2118 5172 1.749634 CTTACACACCTAGACGGAGGG 59.250 57.143 5.42 0.00 41.36 4.30
2119 5173 0.994247 TACACACCTAGACGGAGGGA 59.006 55.000 5.42 0.00 41.36 4.20
2120 5174 0.323542 ACACACCTAGACGGAGGGAG 60.324 60.000 5.42 0.78 41.36 4.30
2121 5175 0.034380 CACACCTAGACGGAGGGAGA 60.034 60.000 5.42 0.00 41.36 3.71
2122 5176 0.256464 ACACCTAGACGGAGGGAGAG 59.744 60.000 5.42 0.00 41.36 3.20
2123 5177 0.256464 CACCTAGACGGAGGGAGAGT 59.744 60.000 5.42 0.00 41.36 3.24
2124 5178 1.489649 CACCTAGACGGAGGGAGAGTA 59.510 57.143 5.42 0.00 41.36 2.59
2132 5186 1.752436 CGGAGGGAGAGTAGCATGACT 60.752 57.143 0.00 0.00 0.00 3.41
2171 5225 2.597305 CGAGGAATAGTCAAAACGACCG 59.403 50.000 0.00 0.00 46.69 4.79
2209 5267 0.176910 CAAGCCATGCATGCCATTCA 59.823 50.000 21.69 0.00 29.71 2.57
2211 5269 2.003937 AGCCATGCATGCCATTCATA 57.996 45.000 21.69 0.00 33.19 2.15
2224 5282 0.662619 ATTCATATGCACGCGTTGGG 59.337 50.000 10.22 0.00 0.00 4.12
2232 5290 3.055719 ACGCGTTGGGAAGCATGG 61.056 61.111 5.58 0.00 0.00 3.66
2248 5307 2.677199 CATGGAAGATGGACGTATCGG 58.323 52.381 0.00 0.00 32.33 4.18
2288 5354 1.673920 TCCTTTCACCGTTCAAACTGC 59.326 47.619 0.00 0.00 0.00 4.40
2293 5359 2.028130 TCACCGTTCAAACTGCCATTT 58.972 42.857 0.00 0.00 0.00 2.32
2294 5360 2.034053 TCACCGTTCAAACTGCCATTTC 59.966 45.455 0.00 0.00 0.00 2.17
2295 5361 2.034558 CACCGTTCAAACTGCCATTTCT 59.965 45.455 0.00 0.00 0.00 2.52
2296 5362 2.293399 ACCGTTCAAACTGCCATTTCTC 59.707 45.455 0.00 0.00 0.00 2.87
2298 5364 3.558505 CGTTCAAACTGCCATTTCTCTG 58.441 45.455 0.00 0.00 0.00 3.35
2300 5366 4.293415 GTTCAAACTGCCATTTCTCTGTG 58.707 43.478 0.00 0.00 0.00 3.66
2302 5368 3.316029 TCAAACTGCCATTTCTCTGTGTG 59.684 43.478 0.00 0.00 0.00 3.82
2303 5375 1.901591 ACTGCCATTTCTCTGTGTGG 58.098 50.000 0.00 0.00 34.84 4.17
2307 5379 1.545428 GCCATTTCTCTGTGTGGGTGA 60.545 52.381 0.00 0.00 32.35 4.02
2327 5399 5.377478 GTGAGAGAGAGGGGAAAAGAAAAA 58.623 41.667 0.00 0.00 0.00 1.94
2328 5400 5.471797 GTGAGAGAGAGGGGAAAAGAAAAAG 59.528 44.000 0.00 0.00 0.00 2.27
2334 5406 7.126061 AGAGAGGGGAAAAGAAAAAGAAAGAA 58.874 34.615 0.00 0.00 0.00 2.52
2456 6845 7.430441 TGTAGAGTTGGTTATTTTTCTTTGCC 58.570 34.615 0.00 0.00 0.00 4.52
2469 6858 2.946785 TCTTTGCCGGGGTAAAAGAAA 58.053 42.857 2.18 0.00 29.99 2.52
2473 6862 5.539193 TCTTTGCCGGGGTAAAAGAAATTTA 59.461 36.000 2.18 0.00 32.27 1.40
2474 6863 6.211785 TCTTTGCCGGGGTAAAAGAAATTTAT 59.788 34.615 2.18 0.00 35.98 1.40
2477 6866 6.399743 TGCCGGGGTAAAAGAAATTTATTTC 58.600 36.000 10.99 7.03 44.91 2.17
2478 6867 6.014499 TGCCGGGGTAAAAGAAATTTATTTCA 60.014 34.615 10.99 0.00 46.50 2.69
2525 6916 4.808364 GCAAGAGATTCTCGATATATGGGC 59.192 45.833 8.01 0.40 35.36 5.36
2529 6920 4.877773 AGATTCTCGATATATGGGCCTCT 58.122 43.478 4.53 0.00 0.00 3.69
2546 6937 4.142381 GGCCTCTTTTATGTAGCCAAACAG 60.142 45.833 0.00 0.00 40.20 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
102 104 3.254060 CGAAACCACAGACGATGATCTT 58.746 45.455 0.00 0.00 0.00 2.40
236 238 5.661312 TGAAACTCATGGCCATAGTAGTAGT 59.339 40.000 20.30 13.07 0.00 2.73
268 282 3.498774 AACATCAGGCTGAGAACACTT 57.501 42.857 23.24 0.50 0.00 3.16
272 286 3.188048 CACTGAAACATCAGGCTGAGAAC 59.812 47.826 23.24 12.07 41.76 3.01
274 288 2.369860 ACACTGAAACATCAGGCTGAGA 59.630 45.455 23.24 0.00 41.76 3.27
275 289 2.740981 GACACTGAAACATCAGGCTGAG 59.259 50.000 23.24 16.27 41.76 3.35
278 292 1.271597 GGGACACTGAAACATCAGGCT 60.272 52.381 10.32 0.00 41.76 4.58
279 293 1.168714 GGGACACTGAAACATCAGGC 58.831 55.000 10.32 0.25 41.76 4.85
280 294 1.270839 ACGGGACACTGAAACATCAGG 60.271 52.381 10.32 2.65 41.76 3.86
292 312 1.598130 AGCAGAAGCAACGGGACAC 60.598 57.895 0.00 0.00 45.49 3.67
351 371 2.126307 CACGTCCCAGCAGAGTCG 60.126 66.667 0.00 0.00 0.00 4.18
361 397 2.277084 CAAGTACCATAAGCACGTCCC 58.723 52.381 0.00 0.00 0.00 4.46
362 398 2.093869 TCCAAGTACCATAAGCACGTCC 60.094 50.000 0.00 0.00 0.00 4.79
363 399 3.241067 TCCAAGTACCATAAGCACGTC 57.759 47.619 0.00 0.00 0.00 4.34
364 400 3.007614 AGTTCCAAGTACCATAAGCACGT 59.992 43.478 0.00 0.00 0.00 4.49
365 401 3.370978 CAGTTCCAAGTACCATAAGCACG 59.629 47.826 0.00 0.00 0.00 5.34
366 402 4.575885 TCAGTTCCAAGTACCATAAGCAC 58.424 43.478 0.00 0.00 0.00 4.40
367 403 4.901197 TCAGTTCCAAGTACCATAAGCA 57.099 40.909 0.00 0.00 0.00 3.91
368 404 4.636206 CCTTCAGTTCCAAGTACCATAAGC 59.364 45.833 0.00 0.00 0.00 3.09
369 405 5.805728 ACCTTCAGTTCCAAGTACCATAAG 58.194 41.667 0.00 0.00 0.00 1.73
370 406 5.836024 ACCTTCAGTTCCAAGTACCATAA 57.164 39.130 0.00 0.00 0.00 1.90
371 407 5.105635 CGTACCTTCAGTTCCAAGTACCATA 60.106 44.000 0.00 0.00 0.00 2.74
372 408 4.322499 CGTACCTTCAGTTCCAAGTACCAT 60.322 45.833 0.00 0.00 0.00 3.55
373 409 3.006110 CGTACCTTCAGTTCCAAGTACCA 59.994 47.826 0.00 0.00 0.00 3.25
374 410 3.256631 TCGTACCTTCAGTTCCAAGTACC 59.743 47.826 0.00 0.00 0.00 3.34
375 411 4.022503 AGTCGTACCTTCAGTTCCAAGTAC 60.023 45.833 0.00 0.00 0.00 2.73
376 412 4.147321 AGTCGTACCTTCAGTTCCAAGTA 58.853 43.478 0.00 0.00 0.00 2.24
377 413 2.963782 AGTCGTACCTTCAGTTCCAAGT 59.036 45.455 0.00 0.00 0.00 3.16
378 414 3.662247 AGTCGTACCTTCAGTTCCAAG 57.338 47.619 0.00 0.00 0.00 3.61
395 431 2.031944 GCCTGAACTTTCGAACCAAGTC 60.032 50.000 0.00 0.00 33.12 3.01
452 488 7.989741 ACTCCACTACTTGATCCTGAATTATTG 59.010 37.037 0.00 0.00 0.00 1.90
471 509 5.486526 CAGAGCAGAGAAAAATACTCCACT 58.513 41.667 0.00 0.00 35.27 4.00
511 549 1.884579 CTGCAACCTGTTGAGAGCAAT 59.115 47.619 13.94 0.00 42.93 3.56
525 563 4.274459 AGAGACAACAACAGATTCTGCAAC 59.726 41.667 13.64 0.00 34.37 4.17
535 573 1.068748 GCATGGCAGAGACAACAACAG 60.069 52.381 0.00 0.00 0.00 3.16
536 574 0.953727 GCATGGCAGAGACAACAACA 59.046 50.000 0.00 0.00 0.00 3.33
537 575 1.068748 CAGCATGGCAGAGACAACAAC 60.069 52.381 0.00 0.00 0.00 3.32
563 605 6.591834 CACTTGTTGGGTTTTACACATTTTCA 59.408 34.615 0.00 0.00 27.78 2.69
585 628 2.612212 CCGTTTGCAAACAGTACTCACT 59.388 45.455 34.59 0.00 38.81 3.41
731 780 0.943835 CCGTCACTGCGTCAACATCA 60.944 55.000 0.00 0.00 0.00 3.07
762 829 0.035739 TGGTCAAACTAACGGGGCTC 59.964 55.000 0.00 0.00 0.00 4.70
848 2315 2.357034 GCTGACTTGGTTCGCCGA 60.357 61.111 0.00 0.00 41.18 5.54
873 2340 4.697352 GTGGAGATTAAGCACATGTCAGTT 59.303 41.667 0.00 0.00 0.00 3.16
961 2442 1.611673 CGGCTGCATTTATAGGGAGGG 60.612 57.143 0.50 0.00 0.00 4.30
981 2464 2.887568 CCGTGATGCTCTCGTGGC 60.888 66.667 6.80 0.00 32.17 5.01
986 2469 0.950555 TGTGTTGCCGTGATGCTCTC 60.951 55.000 0.00 0.00 0.00 3.20
997 2480 1.737355 TTGGCTCAGCTTGTGTTGCC 61.737 55.000 0.00 0.00 42.90 4.52
1050 2534 0.751277 TGCCCAGCACCATATTTCCG 60.751 55.000 0.00 0.00 31.71 4.30
1185 2674 3.041940 CCGACAACGTGGCCACTC 61.042 66.667 32.28 21.60 37.88 3.51
1254 2743 3.365472 GCTCCTCTTCTTCTTCTCCTCT 58.635 50.000 0.00 0.00 0.00 3.69
1259 2748 1.190643 CCCGCTCCTCTTCTTCTTCT 58.809 55.000 0.00 0.00 0.00 2.85
1296 2788 2.637872 ACGAGAATGGAAGGGAAAGTGA 59.362 45.455 0.00 0.00 0.00 3.41
1324 2816 3.795688 AGGAGGTTGAAATCAGAGCAA 57.204 42.857 0.00 0.00 0.00 3.91
1408 2905 7.500227 TCATCAAATAATCTAGCCCTCACAAAG 59.500 37.037 0.00 0.00 0.00 2.77
1459 2959 2.686915 ACGGAGGGAGTACAAAGATACG 59.313 50.000 0.00 0.00 0.00 3.06
1460 2960 3.067883 GGACGGAGGGAGTACAAAGATAC 59.932 52.174 0.00 0.00 0.00 2.24
1462 2962 2.108970 GGACGGAGGGAGTACAAAGAT 58.891 52.381 0.00 0.00 0.00 2.40
1497 3101 2.094894 TCCGTGTCGACTCGAATTACTC 59.905 50.000 34.13 0.00 37.72 2.59
1509 3113 0.034767 ACATACTCCCTCCGTGTCGA 60.035 55.000 0.00 0.00 0.00 4.20
1510 3114 0.100682 CACATACTCCCTCCGTGTCG 59.899 60.000 0.00 0.00 0.00 4.35
1511 3115 1.183549 ACACATACTCCCTCCGTGTC 58.816 55.000 0.00 0.00 36.05 3.67
1512 3116 1.640917 AACACATACTCCCTCCGTGT 58.359 50.000 0.00 0.00 42.36 4.49
1513 3117 3.880047 TTAACACATACTCCCTCCGTG 57.120 47.619 0.00 0.00 0.00 4.94
1541 3145 8.405531 ACAGTATTCCGAAATGAACATTTATGG 58.594 33.333 17.45 17.45 40.77 2.74
1548 3152 7.033530 ACAAAACAGTATTCCGAAATGAACA 57.966 32.000 0.00 0.00 0.00 3.18
1565 3169 8.443937 GTTATTAAAACTGTGGCAAACAAAACA 58.556 29.630 0.00 0.00 38.67 2.83
1566 3170 7.632897 CGTTATTAAAACTGTGGCAAACAAAAC 59.367 33.333 0.00 0.00 38.67 2.43
1567 3171 7.674240 GCGTTATTAAAACTGTGGCAAACAAAA 60.674 33.333 0.00 0.00 38.67 2.44
1568 3172 6.237861 GCGTTATTAAAACTGTGGCAAACAAA 60.238 34.615 0.00 0.00 38.67 2.83
1569 3173 5.232414 GCGTTATTAAAACTGTGGCAAACAA 59.768 36.000 0.00 0.00 38.67 2.83
1607 3211 2.228343 AGTGCTAGTTGACCGTGACTAC 59.772 50.000 0.00 0.00 0.00 2.73
1633 3237 1.705873 ATCCGTGGGATGTCCTAGAC 58.294 55.000 0.00 0.00 41.43 2.59
1634 3238 2.818216 GCTATCCGTGGGATGTCCTAGA 60.818 54.545 7.40 0.00 43.06 2.43
1635 3239 1.546476 GCTATCCGTGGGATGTCCTAG 59.454 57.143 7.40 0.00 43.06 3.02
1636 3240 1.629043 GCTATCCGTGGGATGTCCTA 58.371 55.000 7.40 0.00 43.06 2.94
1637 3241 1.122019 GGCTATCCGTGGGATGTCCT 61.122 60.000 7.40 0.00 43.06 3.85
1638 3242 1.371558 GGCTATCCGTGGGATGTCC 59.628 63.158 7.40 4.67 43.06 4.02
1639 3243 0.034059 CTGGCTATCCGTGGGATGTC 59.966 60.000 7.40 0.55 43.06 3.06
1640 3244 0.398522 TCTGGCTATCCGTGGGATGT 60.399 55.000 7.40 0.00 43.06 3.06
1652 3256 2.022195 GACTGTCGTGGTATCTGGCTA 58.978 52.381 0.00 0.00 0.00 3.93
1654 3258 0.525668 CGACTGTCGTGGTATCTGGC 60.526 60.000 21.30 0.00 34.72 4.85
1655 3259 3.624305 CGACTGTCGTGGTATCTGG 57.376 57.895 21.30 0.00 34.72 3.86
1844 4898 2.223803 ACACACCTAGACTGAGGGAG 57.776 55.000 0.00 0.00 41.36 4.30
1845 4899 3.075582 ACTTACACACCTAGACTGAGGGA 59.924 47.826 0.00 0.00 41.36 4.20
1846 4900 3.432378 ACTTACACACCTAGACTGAGGG 58.568 50.000 0.00 0.00 41.36 4.30
1847 4901 4.079970 TGACTTACACACCTAGACTGAGG 58.920 47.826 0.00 0.00 42.89 3.86
1848 4902 5.650266 AGATGACTTACACACCTAGACTGAG 59.350 44.000 0.00 0.00 0.00 3.35
1849 4903 5.571285 AGATGACTTACACACCTAGACTGA 58.429 41.667 0.00 0.00 0.00 3.41
1850 4904 5.906113 AGATGACTTACACACCTAGACTG 57.094 43.478 0.00 0.00 0.00 3.51
1862 4916 8.455349 GTGGTGCACAACGTAAGATGACTTAC 62.455 46.154 20.43 9.27 43.67 2.34
1863 4917 3.991773 GGTGCACAACGTAAGATGACTTA 59.008 43.478 20.43 0.00 43.67 2.24
1864 4918 2.806244 GGTGCACAACGTAAGATGACTT 59.194 45.455 20.43 0.00 43.67 3.01
1865 4919 2.224185 TGGTGCACAACGTAAGATGACT 60.224 45.455 20.43 0.00 43.67 3.41
1866 4920 2.096417 GTGGTGCACAACGTAAGATGAC 60.096 50.000 20.43 0.00 43.67 3.06
1867 4921 2.139917 GTGGTGCACAACGTAAGATGA 58.860 47.619 20.43 0.00 43.67 2.92
1868 4922 1.136363 CGTGGTGCACAACGTAAGATG 60.136 52.381 33.68 8.57 46.71 2.90
1869 4923 1.144969 CGTGGTGCACAACGTAAGAT 58.855 50.000 33.68 0.00 35.95 2.40
1870 4924 0.102663 TCGTGGTGCACAACGTAAGA 59.897 50.000 38.04 21.78 35.95 2.10
1871 4925 1.126113 GATCGTGGTGCACAACGTAAG 59.874 52.381 38.04 17.11 37.57 2.34
1872 4926 1.141645 GATCGTGGTGCACAACGTAA 58.858 50.000 38.04 25.14 33.40 3.18
1873 4927 0.032267 TGATCGTGGTGCACAACGTA 59.968 50.000 38.04 27.26 33.40 3.57
1874 4928 0.812014 TTGATCGTGGTGCACAACGT 60.812 50.000 38.04 27.72 33.40 3.99
1875 4929 0.110688 CTTGATCGTGGTGCACAACG 60.111 55.000 35.68 35.68 33.40 4.10
1876 4930 0.238289 CCTTGATCGTGGTGCACAAC 59.762 55.000 20.43 17.59 33.40 3.32
1877 4931 1.514678 GCCTTGATCGTGGTGCACAA 61.515 55.000 20.43 3.78 33.40 3.33
1878 4932 1.965930 GCCTTGATCGTGGTGCACA 60.966 57.895 20.43 1.62 33.40 4.57
1879 4933 2.870372 GCCTTGATCGTGGTGCAC 59.130 61.111 8.80 8.80 0.00 4.57
1880 4934 2.741985 CGCCTTGATCGTGGTGCA 60.742 61.111 4.74 0.00 0.00 4.57
1881 4935 3.499737 CCGCCTTGATCGTGGTGC 61.500 66.667 10.71 0.00 32.89 5.01
1882 4936 0.953471 TTTCCGCCTTGATCGTGGTG 60.953 55.000 9.57 9.57 32.48 4.17
1883 4937 0.673644 CTTTCCGCCTTGATCGTGGT 60.674 55.000 5.82 0.00 32.48 4.16
1884 4938 1.369091 CCTTTCCGCCTTGATCGTGG 61.369 60.000 0.00 0.00 0.00 4.94
1885 4939 0.391130 TCCTTTCCGCCTTGATCGTG 60.391 55.000 0.00 0.00 0.00 4.35
1886 4940 0.323629 TTCCTTTCCGCCTTGATCGT 59.676 50.000 0.00 0.00 0.00 3.73
1887 4941 1.448985 TTTCCTTTCCGCCTTGATCG 58.551 50.000 0.00 0.00 0.00 3.69
1888 4942 3.443681 TCATTTTCCTTTCCGCCTTGATC 59.556 43.478 0.00 0.00 0.00 2.92
1889 4943 3.430453 TCATTTTCCTTTCCGCCTTGAT 58.570 40.909 0.00 0.00 0.00 2.57
1890 4944 2.819608 CTCATTTTCCTTTCCGCCTTGA 59.180 45.455 0.00 0.00 0.00 3.02
1891 4945 2.819608 TCTCATTTTCCTTTCCGCCTTG 59.180 45.455 0.00 0.00 0.00 3.61
1892 4946 3.154827 TCTCATTTTCCTTTCCGCCTT 57.845 42.857 0.00 0.00 0.00 4.35
1893 4947 2.879103 TCTCATTTTCCTTTCCGCCT 57.121 45.000 0.00 0.00 0.00 5.52
1894 4948 3.934457 TTTCTCATTTTCCTTTCCGCC 57.066 42.857 0.00 0.00 0.00 6.13
1895 4949 4.871513 AGTTTTCTCATTTTCCTTTCCGC 58.128 39.130 0.00 0.00 0.00 5.54
1896 4950 8.915654 CATTAAGTTTTCTCATTTTCCTTTCCG 58.084 33.333 0.00 0.00 0.00 4.30
1897 4951 9.764363 ACATTAAGTTTTCTCATTTTCCTTTCC 57.236 29.630 0.00 0.00 0.00 3.13
1906 4960 9.822185 AGCAAAAAGACATTAAGTTTTCTCATT 57.178 25.926 0.00 0.00 0.00 2.57
1943 4997 6.477688 GCAGTGATTAGTTTATTGCATGCAAT 59.522 34.615 39.40 39.40 46.85 3.56
1944 4998 5.806502 GCAGTGATTAGTTTATTGCATGCAA 59.193 36.000 33.57 33.57 40.47 4.08
1945 4999 5.105837 TGCAGTGATTAGTTTATTGCATGCA 60.106 36.000 18.46 18.46 35.41 3.96
1946 5000 5.342433 TGCAGTGATTAGTTTATTGCATGC 58.658 37.500 11.82 11.82 35.41 4.06
1947 5001 9.338291 GATATGCAGTGATTAGTTTATTGCATG 57.662 33.333 16.62 0.00 46.59 4.06
1949 5003 8.449251 TGATATGCAGTGATTAGTTTATTGCA 57.551 30.769 0.00 0.00 43.24 4.08
1950 5004 9.338291 CATGATATGCAGTGATTAGTTTATTGC 57.662 33.333 0.00 0.00 0.00 3.56
1955 5009 8.192774 CCAAACATGATATGCAGTGATTAGTTT 58.807 33.333 0.00 0.00 0.00 2.66
1956 5010 7.340232 ACCAAACATGATATGCAGTGATTAGTT 59.660 33.333 0.00 0.00 0.00 2.24
1957 5011 6.830324 ACCAAACATGATATGCAGTGATTAGT 59.170 34.615 0.00 0.00 0.00 2.24
1958 5012 7.268199 ACCAAACATGATATGCAGTGATTAG 57.732 36.000 0.00 0.00 0.00 1.73
1959 5013 7.992608 ACTACCAAACATGATATGCAGTGATTA 59.007 33.333 0.00 0.00 0.00 1.75
1960 5014 6.830324 ACTACCAAACATGATATGCAGTGATT 59.170 34.615 0.00 0.00 0.00 2.57
1961 5015 6.359804 ACTACCAAACATGATATGCAGTGAT 58.640 36.000 0.00 0.00 0.00 3.06
1962 5016 5.744171 ACTACCAAACATGATATGCAGTGA 58.256 37.500 0.00 0.00 0.00 3.41
1963 5017 5.819379 AGACTACCAAACATGATATGCAGTG 59.181 40.000 0.00 0.00 0.00 3.66
1964 5018 5.994250 AGACTACCAAACATGATATGCAGT 58.006 37.500 0.00 1.67 0.00 4.40
1965 5019 6.051074 TGAGACTACCAAACATGATATGCAG 58.949 40.000 0.00 0.00 0.00 4.41
1966 5020 5.988287 TGAGACTACCAAACATGATATGCA 58.012 37.500 0.00 0.00 0.00 3.96
1967 5021 6.540189 ACTTGAGACTACCAAACATGATATGC 59.460 38.462 0.00 0.00 0.00 3.14
1968 5022 7.765819 TGACTTGAGACTACCAAACATGATATG 59.234 37.037 0.00 0.00 0.00 1.78
1969 5023 7.851228 TGACTTGAGACTACCAAACATGATAT 58.149 34.615 0.00 0.00 0.00 1.63
1970 5024 7.239763 TGACTTGAGACTACCAAACATGATA 57.760 36.000 0.00 0.00 0.00 2.15
1971 5025 6.114187 TGACTTGAGACTACCAAACATGAT 57.886 37.500 0.00 0.00 0.00 2.45
1972 5026 5.545063 TGACTTGAGACTACCAAACATGA 57.455 39.130 0.00 0.00 0.00 3.07
1973 5027 6.427853 TCAATGACTTGAGACTACCAAACATG 59.572 38.462 0.00 0.00 36.46 3.21
1974 5028 6.533730 TCAATGACTTGAGACTACCAAACAT 58.466 36.000 0.00 0.00 36.46 2.71
1975 5029 5.924356 TCAATGACTTGAGACTACCAAACA 58.076 37.500 0.00 0.00 36.46 2.83
1976 5030 6.861065 TTCAATGACTTGAGACTACCAAAC 57.139 37.500 0.00 0.00 42.19 2.93
1977 5031 6.017109 GCTTTCAATGACTTGAGACTACCAAA 60.017 38.462 0.00 0.00 42.19 3.28
1978 5032 5.470098 GCTTTCAATGACTTGAGACTACCAA 59.530 40.000 0.00 0.00 42.19 3.67
1979 5033 4.997395 GCTTTCAATGACTTGAGACTACCA 59.003 41.667 0.00 0.00 42.19 3.25
1980 5034 4.997395 TGCTTTCAATGACTTGAGACTACC 59.003 41.667 0.00 0.00 42.19 3.18
1981 5035 6.541086 CATGCTTTCAATGACTTGAGACTAC 58.459 40.000 0.00 0.00 42.19 2.73
1982 5036 5.122869 GCATGCTTTCAATGACTTGAGACTA 59.877 40.000 11.37 0.00 42.19 2.59
1983 5037 4.082895 GCATGCTTTCAATGACTTGAGACT 60.083 41.667 11.37 0.00 42.19 3.24
1984 5038 4.164294 GCATGCTTTCAATGACTTGAGAC 58.836 43.478 11.37 0.00 42.19 3.36
1985 5039 3.822167 TGCATGCTTTCAATGACTTGAGA 59.178 39.130 20.33 0.00 42.19 3.27
1986 5040 3.918591 GTGCATGCTTTCAATGACTTGAG 59.081 43.478 20.33 0.00 42.19 3.02
1987 5041 3.609879 CGTGCATGCTTTCAATGACTTGA 60.610 43.478 20.33 0.00 39.62 3.02
1988 5042 2.659757 CGTGCATGCTTTCAATGACTTG 59.340 45.455 20.33 0.00 0.00 3.16
1989 5043 2.352030 CCGTGCATGCTTTCAATGACTT 60.352 45.455 20.33 0.00 0.00 3.01
1990 5044 1.200716 CCGTGCATGCTTTCAATGACT 59.799 47.619 20.33 0.00 0.00 3.41
1991 5045 1.621107 CCGTGCATGCTTTCAATGAC 58.379 50.000 20.33 4.81 0.00 3.06
1992 5046 0.109179 GCCGTGCATGCTTTCAATGA 60.109 50.000 20.33 0.00 0.00 2.57
1993 5047 1.079875 GGCCGTGCATGCTTTCAATG 61.080 55.000 20.33 3.08 0.00 2.82
1994 5048 1.216178 GGCCGTGCATGCTTTCAAT 59.784 52.632 20.33 0.00 0.00 2.57
1995 5049 2.650196 GGCCGTGCATGCTTTCAA 59.350 55.556 20.33 0.00 0.00 2.69
1996 5050 3.372730 GGGCCGTGCATGCTTTCA 61.373 61.111 20.33 0.00 0.00 2.69
1997 5051 3.372730 TGGGCCGTGCATGCTTTC 61.373 61.111 20.33 8.51 0.00 2.62
1998 5052 3.683937 GTGGGCCGTGCATGCTTT 61.684 61.111 20.33 0.00 0.00 3.51
1999 5053 4.972733 TGTGGGCCGTGCATGCTT 62.973 61.111 20.33 0.00 0.00 3.91
2000 5054 4.746309 ATGTGGGCCGTGCATGCT 62.746 61.111 20.33 0.00 0.00 3.79
2001 5055 4.197498 GATGTGGGCCGTGCATGC 62.197 66.667 11.82 11.82 0.00 4.06
2002 5056 2.438975 AGATGTGGGCCGTGCATG 60.439 61.111 11.83 0.00 0.00 4.06
2003 5057 2.124570 GAGATGTGGGCCGTGCAT 60.125 61.111 0.00 3.14 0.00 3.96
2004 5058 1.549243 TAAGAGATGTGGGCCGTGCA 61.549 55.000 0.00 0.00 0.00 4.57
2005 5059 0.179045 ATAAGAGATGTGGGCCGTGC 60.179 55.000 0.00 0.00 0.00 5.34
2006 5060 1.942657 CAATAAGAGATGTGGGCCGTG 59.057 52.381 0.00 0.00 0.00 4.94
2007 5061 1.134098 CCAATAAGAGATGTGGGCCGT 60.134 52.381 0.00 0.00 0.00 5.68
2008 5062 1.134098 ACCAATAAGAGATGTGGGCCG 60.134 52.381 0.00 0.00 35.32 6.13
2009 5063 2.689983 CAACCAATAAGAGATGTGGGCC 59.310 50.000 0.00 0.00 35.32 5.80
2010 5064 3.620488 TCAACCAATAAGAGATGTGGGC 58.380 45.455 0.00 0.00 35.32 5.36
2011 5065 7.000472 ACATATCAACCAATAAGAGATGTGGG 59.000 38.462 0.00 0.00 41.18 4.61
2012 5066 7.716560 TGACATATCAACCAATAAGAGATGTGG 59.283 37.037 6.64 0.00 42.33 4.17
2013 5067 8.667076 TGACATATCAACCAATAAGAGATGTG 57.333 34.615 6.64 0.00 42.33 3.21
2032 5086 9.177608 CCTCCTCATTTCTTGTTTTATGACATA 57.822 33.333 0.00 0.00 0.00 2.29
2033 5087 7.123247 CCCTCCTCATTTCTTGTTTTATGACAT 59.877 37.037 0.00 0.00 0.00 3.06
2034 5088 6.434028 CCCTCCTCATTTCTTGTTTTATGACA 59.566 38.462 0.00 0.00 0.00 3.58
2035 5089 6.659242 TCCCTCCTCATTTCTTGTTTTATGAC 59.341 38.462 0.00 0.00 0.00 3.06
2036 5090 6.789268 TCCCTCCTCATTTCTTGTTTTATGA 58.211 36.000 0.00 0.00 0.00 2.15
2037 5091 6.660949 ACTCCCTCCTCATTTCTTGTTTTATG 59.339 38.462 0.00 0.00 0.00 1.90
2038 5092 6.794534 ACTCCCTCCTCATTTCTTGTTTTAT 58.205 36.000 0.00 0.00 0.00 1.40
2039 5093 6.200878 ACTCCCTCCTCATTTCTTGTTTTA 57.799 37.500 0.00 0.00 0.00 1.52
2040 5094 5.066913 ACTCCCTCCTCATTTCTTGTTTT 57.933 39.130 0.00 0.00 0.00 2.43
2041 5095 4.731313 ACTCCCTCCTCATTTCTTGTTT 57.269 40.909 0.00 0.00 0.00 2.83
2042 5096 4.731313 AACTCCCTCCTCATTTCTTGTT 57.269 40.909 0.00 0.00 0.00 2.83
2043 5097 5.843019 TTAACTCCCTCCTCATTTCTTGT 57.157 39.130 0.00 0.00 0.00 3.16
2044 5098 6.183347 ACATTAACTCCCTCCTCATTTCTTG 58.817 40.000 0.00 0.00 0.00 3.02
2045 5099 6.394345 ACATTAACTCCCTCCTCATTTCTT 57.606 37.500 0.00 0.00 0.00 2.52
2046 5100 6.126739 GGTACATTAACTCCCTCCTCATTTCT 60.127 42.308 0.00 0.00 0.00 2.52
2047 5101 6.056236 GGTACATTAACTCCCTCCTCATTTC 58.944 44.000 0.00 0.00 0.00 2.17
2048 5102 5.396436 CGGTACATTAACTCCCTCCTCATTT 60.396 44.000 0.00 0.00 0.00 2.32
2049 5103 4.101119 CGGTACATTAACTCCCTCCTCATT 59.899 45.833 0.00 0.00 0.00 2.57
2050 5104 3.641906 CGGTACATTAACTCCCTCCTCAT 59.358 47.826 0.00 0.00 0.00 2.90
2051 5105 3.028850 CGGTACATTAACTCCCTCCTCA 58.971 50.000 0.00 0.00 0.00 3.86
2052 5106 3.029570 ACGGTACATTAACTCCCTCCTC 58.970 50.000 0.00 0.00 0.00 3.71
2053 5107 2.764572 CACGGTACATTAACTCCCTCCT 59.235 50.000 0.00 0.00 0.00 3.69
2054 5108 2.740904 GCACGGTACATTAACTCCCTCC 60.741 54.545 0.00 0.00 0.00 4.30
2055 5109 2.547826 GCACGGTACATTAACTCCCTC 58.452 52.381 0.00 0.00 0.00 4.30
2056 5110 1.208776 GGCACGGTACATTAACTCCCT 59.791 52.381 0.00 0.00 0.00 4.20
2057 5111 1.208776 AGGCACGGTACATTAACTCCC 59.791 52.381 0.00 0.00 0.00 4.30
2058 5112 2.685850 AGGCACGGTACATTAACTCC 57.314 50.000 0.00 0.00 0.00 3.85
2059 5113 5.007332 CCAAATAGGCACGGTACATTAACTC 59.993 44.000 0.00 0.00 0.00 3.01
2060 5114 4.879545 CCAAATAGGCACGGTACATTAACT 59.120 41.667 0.00 0.00 0.00 2.24
2061 5115 4.637091 ACCAAATAGGCACGGTACATTAAC 59.363 41.667 0.00 0.00 43.14 2.01
2062 5116 4.846040 ACCAAATAGGCACGGTACATTAA 58.154 39.130 0.00 0.00 43.14 1.40
2063 5117 4.490899 ACCAAATAGGCACGGTACATTA 57.509 40.909 0.00 0.00 43.14 1.90
2064 5118 3.359695 ACCAAATAGGCACGGTACATT 57.640 42.857 0.00 0.00 43.14 2.71
2065 5119 3.359695 AACCAAATAGGCACGGTACAT 57.640 42.857 0.00 0.00 43.14 2.29
2066 5120 2.863132 AACCAAATAGGCACGGTACA 57.137 45.000 0.00 0.00 43.14 2.90
2067 5121 3.425227 CGAAAACCAAATAGGCACGGTAC 60.425 47.826 0.00 0.00 43.14 3.34
2068 5122 2.743126 CGAAAACCAAATAGGCACGGTA 59.257 45.455 0.00 0.00 43.14 4.02
2069 5123 1.538075 CGAAAACCAAATAGGCACGGT 59.462 47.619 0.00 0.00 43.14 4.83
2070 5124 1.538075 ACGAAAACCAAATAGGCACGG 59.462 47.619 0.00 0.00 43.14 4.94
2071 5125 2.981400 ACGAAAACCAAATAGGCACG 57.019 45.000 0.00 0.00 43.14 5.34
2072 5126 4.216902 ACCTTACGAAAACCAAATAGGCAC 59.783 41.667 0.00 0.00 43.14 5.01
2073 5127 4.216687 CACCTTACGAAAACCAAATAGGCA 59.783 41.667 0.00 0.00 43.14 4.75
2074 5128 4.456566 TCACCTTACGAAAACCAAATAGGC 59.543 41.667 0.00 0.00 43.14 3.93
2075 5129 5.704053 AGTCACCTTACGAAAACCAAATAGG 59.296 40.000 0.00 0.00 45.67 2.57
2076 5130 6.796705 AGTCACCTTACGAAAACCAAATAG 57.203 37.500 0.00 0.00 0.00 1.73
2077 5131 8.086851 GTAAGTCACCTTACGAAAACCAAATA 57.913 34.615 0.00 0.00 42.56 1.40
2078 5132 6.962686 GTAAGTCACCTTACGAAAACCAAAT 58.037 36.000 0.00 0.00 42.56 2.32
2079 5133 6.362210 GTAAGTCACCTTACGAAAACCAAA 57.638 37.500 0.00 0.00 42.56 3.28
2080 5134 5.989551 GTAAGTCACCTTACGAAAACCAA 57.010 39.130 0.00 0.00 42.56 3.67
2094 5148 2.816087 TCCGTCTAGGTGTGTAAGTCAC 59.184 50.000 0.00 0.00 42.20 3.67
2095 5149 3.079578 CTCCGTCTAGGTGTGTAAGTCA 58.920 50.000 0.00 0.00 41.99 3.41
2096 5150 2.422832 CCTCCGTCTAGGTGTGTAAGTC 59.577 54.545 0.00 0.00 41.99 3.01
2097 5151 2.444421 CCTCCGTCTAGGTGTGTAAGT 58.556 52.381 0.00 0.00 41.99 2.24
2098 5152 1.749634 CCCTCCGTCTAGGTGTGTAAG 59.250 57.143 0.00 0.00 41.99 2.34
2099 5153 1.355381 TCCCTCCGTCTAGGTGTGTAA 59.645 52.381 0.00 0.00 41.99 2.41
2100 5154 0.994247 TCCCTCCGTCTAGGTGTGTA 59.006 55.000 0.00 0.00 41.99 2.90
2101 5155 0.323542 CTCCCTCCGTCTAGGTGTGT 60.324 60.000 0.00 0.00 41.99 3.72
2102 5156 0.034380 TCTCCCTCCGTCTAGGTGTG 60.034 60.000 0.00 0.00 41.99 3.82
2103 5157 0.256464 CTCTCCCTCCGTCTAGGTGT 59.744 60.000 0.00 0.00 41.99 4.16
2104 5158 0.256464 ACTCTCCCTCCGTCTAGGTG 59.744 60.000 0.00 0.00 41.99 4.00
2105 5159 1.770061 CTACTCTCCCTCCGTCTAGGT 59.230 57.143 0.00 0.00 41.99 3.08
2106 5160 1.543871 GCTACTCTCCCTCCGTCTAGG 60.544 61.905 0.00 0.00 42.97 3.02
2107 5161 1.141254 TGCTACTCTCCCTCCGTCTAG 59.859 57.143 0.00 0.00 0.00 2.43
2108 5162 1.210538 TGCTACTCTCCCTCCGTCTA 58.789 55.000 0.00 0.00 0.00 2.59
2109 5163 0.553819 ATGCTACTCTCCCTCCGTCT 59.446 55.000 0.00 0.00 0.00 4.18
2110 5164 0.671251 CATGCTACTCTCCCTCCGTC 59.329 60.000 0.00 0.00 0.00 4.79
2111 5165 0.259065 TCATGCTACTCTCCCTCCGT 59.741 55.000 0.00 0.00 0.00 4.69
2112 5166 0.671251 GTCATGCTACTCTCCCTCCG 59.329 60.000 0.00 0.00 0.00 4.63
2113 5167 2.080654 AGTCATGCTACTCTCCCTCC 57.919 55.000 0.00 0.00 0.00 4.30
2114 5168 3.954904 TGTAAGTCATGCTACTCTCCCTC 59.045 47.826 0.00 0.00 0.00 4.30
2115 5169 3.982516 TGTAAGTCATGCTACTCTCCCT 58.017 45.455 0.00 0.00 0.00 4.20
2116 5170 4.557695 CGATGTAAGTCATGCTACTCTCCC 60.558 50.000 0.00 0.00 36.83 4.30
2117 5171 4.276183 TCGATGTAAGTCATGCTACTCTCC 59.724 45.833 0.00 0.00 36.83 3.71
2118 5172 5.425577 TCGATGTAAGTCATGCTACTCTC 57.574 43.478 0.00 0.00 36.83 3.20
2119 5173 5.836821 TTCGATGTAAGTCATGCTACTCT 57.163 39.130 0.00 0.00 36.83 3.24
2120 5174 6.144724 GGAATTCGATGTAAGTCATGCTACTC 59.855 42.308 0.00 0.00 36.83 2.59
2121 5175 5.986135 GGAATTCGATGTAAGTCATGCTACT 59.014 40.000 0.00 0.00 36.83 2.57
2122 5176 5.986135 AGGAATTCGATGTAAGTCATGCTAC 59.014 40.000 0.00 0.00 36.83 3.58
2123 5177 6.161855 AGGAATTCGATGTAAGTCATGCTA 57.838 37.500 0.00 0.00 36.83 3.49
2124 5178 5.028549 AGGAATTCGATGTAAGTCATGCT 57.971 39.130 0.00 0.00 36.83 3.79
2132 5186 4.238761 CTCGGCTAGGAATTCGATGTAA 57.761 45.455 0.00 0.00 0.00 2.41
2209 5267 1.714899 GCTTCCCAACGCGTGCATAT 61.715 55.000 14.98 0.00 0.00 1.78
2211 5269 3.737172 GCTTCCCAACGCGTGCAT 61.737 61.111 14.98 0.00 0.00 3.96
2224 5282 2.029838 ACGTCCATCTTCCATGCTTC 57.970 50.000 0.00 0.00 0.00 3.86
2229 5287 1.000955 GCCGATACGTCCATCTTCCAT 59.999 52.381 0.00 0.00 0.00 3.41
2232 5290 0.387929 TGGCCGATACGTCCATCTTC 59.612 55.000 0.00 0.00 0.00 2.87
2248 5307 4.650131 AGGAGTGGAGTAAGTAGTAATGGC 59.350 45.833 0.00 0.00 0.00 4.40
2257 5316 2.299297 CGGTGAAAGGAGTGGAGTAAGT 59.701 50.000 0.00 0.00 0.00 2.24
2288 5354 2.038952 TCTCACCCACACAGAGAAATGG 59.961 50.000 0.00 0.00 35.62 3.16
2293 5359 1.425448 TCTCTCTCACCCACACAGAGA 59.575 52.381 0.00 0.00 40.32 3.10
2294 5360 1.818060 CTCTCTCTCACCCACACAGAG 59.182 57.143 0.00 0.00 35.86 3.35
2295 5361 1.548809 CCTCTCTCTCACCCACACAGA 60.549 57.143 0.00 0.00 0.00 3.41
2296 5362 0.894141 CCTCTCTCTCACCCACACAG 59.106 60.000 0.00 0.00 0.00 3.66
2298 5364 1.261238 CCCCTCTCTCTCACCCACAC 61.261 65.000 0.00 0.00 0.00 3.82
2300 5366 0.252284 TTCCCCTCTCTCTCACCCAC 60.252 60.000 0.00 0.00 0.00 4.61
2302 5368 1.557371 CTTTTCCCCTCTCTCTCACCC 59.443 57.143 0.00 0.00 0.00 4.61
2303 5375 2.541466 TCTTTTCCCCTCTCTCTCACC 58.459 52.381 0.00 0.00 0.00 4.02
2307 5379 5.913946 TCTTTTTCTTTTCCCCTCTCTCT 57.086 39.130 0.00 0.00 0.00 3.10
2361 6744 2.625790 TGCTATTTGTCGGTTGCCTTTT 59.374 40.909 0.00 0.00 0.00 2.27
2395 6784 4.777896 AGCTTTAGTCTATCCAACACAGGA 59.222 41.667 0.00 0.00 43.01 3.86
2501 6892 5.395103 GCCCATATATCGAGAATCTCTTGCT 60.395 44.000 8.77 0.00 0.00 3.91
2525 6916 5.106157 CCACTGTTTGGCTACATAAAAGAGG 60.106 44.000 0.00 0.00 39.07 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.