Multiple sequence alignment - TraesCS4D01G102700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G102700 chr4D 100.000 4239 0 0 1 4239 81906530 81910768 0.000000e+00 7829.0
1 TraesCS4D01G102700 chr4A 92.202 3360 176 40 860 4167 491687678 491691003 0.000000e+00 4674.0
2 TraesCS4D01G102700 chr4B 93.593 2544 105 32 924 3437 115528634 115531149 0.000000e+00 3742.0
3 TraesCS4D01G102700 chr4B 86.009 436 37 14 3431 3849 115534573 115535001 3.010000e-121 446.0
4 TraesCS4D01G102700 chr4B 86.717 399 35 8 3847 4239 115535277 115535663 1.090000e-115 427.0
5 TraesCS4D01G102700 chr4B 90.984 122 9 2 729 850 115528404 115528523 3.390000e-36 163.0
6 TraesCS4D01G102700 chr7D 80.415 1011 159 29 2081 3082 393106431 393105451 0.000000e+00 734.0
7 TraesCS4D01G102700 chr7A 74.928 1747 344 70 997 2709 445625609 445623923 0.000000e+00 713.0
8 TraesCS4D01G102700 chr7A 79.558 362 61 9 2723 3082 445608413 445608063 3.270000e-61 246.0
9 TraesCS4D01G102700 chr7A 77.358 212 35 12 433 639 516104732 516104529 3.460000e-21 113.0
10 TraesCS4D01G102700 chr2D 76.095 1096 208 32 2023 3083 643258466 643257390 1.350000e-144 523.0
11 TraesCS4D01G102700 chr2D 81.322 605 93 14 2487 3078 643322035 643322632 1.380000e-129 473.0
12 TraesCS4D01G102700 chr2D 77.807 766 142 15 1062 1807 643320689 643321446 8.360000e-122 448.0
13 TraesCS4D01G102700 chr7B 81.135 652 98 21 2022 2668 392814744 392814113 2.280000e-137 499.0
14 TraesCS4D01G102700 chr7B 78.157 293 55 9 432 719 610293301 610293013 1.210000e-40 178.0
15 TraesCS4D01G102700 chr7B 77.200 250 46 8 2102 2347 25674975 25675217 7.390000e-28 135.0
16 TraesCS4D01G102700 chr6A 78.188 298 56 9 418 710 188276500 188276793 9.360000e-42 182.0
17 TraesCS4D01G102700 chrUn 80.455 220 37 6 421 637 352578037 352577821 3.390000e-36 163.0
18 TraesCS4D01G102700 chr5B 78.924 223 41 6 418 637 230359941 230359722 3.420000e-31 147.0
19 TraesCS4D01G102700 chr5B 84.416 77 8 4 2248 2322 293208938 293208864 5.880000e-09 73.1
20 TraesCS4D01G102700 chr3B 78.829 222 43 4 418 637 336984770 336984989 3.420000e-31 147.0
21 TraesCS4D01G102700 chr3A 81.061 132 24 1 2502 2632 558892084 558891953 2.080000e-18 104.0
22 TraesCS4D01G102700 chr5A 84.416 77 8 4 2248 2322 343959452 343959378 5.880000e-09 73.1
23 TraesCS4D01G102700 chr5A 95.122 41 1 1 181 220 533080300 533080340 3.540000e-06 63.9
24 TraesCS4D01G102700 chr6D 73.094 223 44 15 1261 1475 40535001 40535215 9.840000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G102700 chr4D 81906530 81910768 4238 False 7829.0 7829 100.00000 1 4239 1 chr4D.!!$F1 4238
1 TraesCS4D01G102700 chr4A 491687678 491691003 3325 False 4674.0 4674 92.20200 860 4167 1 chr4A.!!$F1 3307
2 TraesCS4D01G102700 chr4B 115528404 115535663 7259 False 1194.5 3742 89.32575 729 4239 4 chr4B.!!$F1 3510
3 TraesCS4D01G102700 chr7D 393105451 393106431 980 True 734.0 734 80.41500 2081 3082 1 chr7D.!!$R1 1001
4 TraesCS4D01G102700 chr7A 445623923 445625609 1686 True 713.0 713 74.92800 997 2709 1 chr7A.!!$R2 1712
5 TraesCS4D01G102700 chr2D 643257390 643258466 1076 True 523.0 523 76.09500 2023 3083 1 chr2D.!!$R1 1060
6 TraesCS4D01G102700 chr2D 643320689 643322632 1943 False 460.5 473 79.56450 1062 3078 2 chr2D.!!$F1 2016
7 TraesCS4D01G102700 chr7B 392814113 392814744 631 True 499.0 499 81.13500 2022 2668 1 chr7B.!!$R1 646

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
664 665 0.036010 CCCACTCTTCGGCTTGATGT 60.036 55.0 0.0 0.0 0.00 3.06 F
1636 1687 0.035458 CGTTTCCAGCCTTCTGTCCT 59.965 55.0 0.0 0.0 38.66 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1962 2037 0.174617 CCTCCTCAACCTCTCGCTTC 59.825 60.0 0.00 0.0 0.0 3.86 R
3340 3505 0.804544 CTAAGCGAATCGGGTTGCGA 60.805 55.0 4.35 0.0 0.0 5.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.949578 CATGTTTTAAGCATCCGAAACATT 57.050 33.333 9.76 0.00 45.37 2.71
24 25 7.350110 CATGTTTTAAGCATCCGAAACATTT 57.650 32.000 9.76 0.00 45.37 2.32
25 26 7.795859 CATGTTTTAAGCATCCGAAACATTTT 58.204 30.769 9.76 0.00 45.37 1.82
26 27 7.778470 TGTTTTAAGCATCCGAAACATTTTT 57.222 28.000 0.00 0.00 37.15 1.94
144 145 6.931243 TTTTTAAAACTTGCGAACGTCTTT 57.069 29.167 0.00 0.00 0.00 2.52
145 146 6.931243 TTTTAAAACTTGCGAACGTCTTTT 57.069 29.167 0.00 0.00 0.00 2.27
146 147 5.918387 TTAAAACTTGCGAACGTCTTTTG 57.082 34.783 0.00 0.00 0.00 2.44
147 148 3.750639 AAACTTGCGAACGTCTTTTGA 57.249 38.095 0.00 0.00 0.00 2.69
148 149 3.750639 AACTTGCGAACGTCTTTTGAA 57.249 38.095 0.00 0.00 0.00 2.69
149 150 3.750639 ACTTGCGAACGTCTTTTGAAA 57.249 38.095 0.00 0.00 0.00 2.69
150 151 4.086199 ACTTGCGAACGTCTTTTGAAAA 57.914 36.364 0.00 0.00 0.00 2.29
151 152 4.477780 ACTTGCGAACGTCTTTTGAAAAA 58.522 34.783 0.00 0.00 0.00 1.94
152 153 4.322539 ACTTGCGAACGTCTTTTGAAAAAC 59.677 37.500 0.00 0.00 0.00 2.43
153 154 3.822996 TGCGAACGTCTTTTGAAAAACA 58.177 36.364 0.00 0.00 0.00 2.83
154 155 3.604627 TGCGAACGTCTTTTGAAAAACAC 59.395 39.130 0.00 0.00 0.00 3.32
155 156 3.300066 GCGAACGTCTTTTGAAAAACACG 60.300 43.478 16.00 16.00 43.03 4.49
156 157 4.083133 CGAACGTCTTTTGAAAAACACGA 58.917 39.130 21.55 1.93 40.95 4.35
157 158 4.550362 CGAACGTCTTTTGAAAAACACGAA 59.450 37.500 21.55 0.00 40.95 3.85
158 159 5.494331 CGAACGTCTTTTGAAAAACACGAAC 60.494 40.000 21.55 15.04 40.95 3.95
159 160 4.160594 ACGTCTTTTGAAAAACACGAACC 58.839 39.130 21.55 0.00 40.95 3.62
160 161 4.159857 CGTCTTTTGAAAAACACGAACCA 58.840 39.130 13.58 0.00 40.95 3.67
161 162 4.796312 CGTCTTTTGAAAAACACGAACCAT 59.204 37.500 13.58 0.00 40.95 3.55
162 163 5.287513 CGTCTTTTGAAAAACACGAACCATT 59.712 36.000 13.58 0.00 40.95 3.16
163 164 6.183360 CGTCTTTTGAAAAACACGAACCATTT 60.183 34.615 13.58 0.00 40.95 2.32
164 165 7.170773 GTCTTTTGAAAAACACGAACCATTTC 58.829 34.615 0.00 0.00 0.00 2.17
178 179 5.494632 AACCATTTCGGAAATATTCGTCC 57.505 39.130 15.13 0.00 38.63 4.79
179 180 4.777463 ACCATTTCGGAAATATTCGTCCT 58.223 39.130 15.13 0.00 38.63 3.85
180 181 5.190677 ACCATTTCGGAAATATTCGTCCTT 58.809 37.500 15.13 0.00 38.63 3.36
181 182 5.650703 ACCATTTCGGAAATATTCGTCCTTT 59.349 36.000 15.13 0.00 38.63 3.11
182 183 6.152154 ACCATTTCGGAAATATTCGTCCTTTT 59.848 34.615 15.13 0.00 38.63 2.27
183 184 7.033185 CCATTTCGGAAATATTCGTCCTTTTT 58.967 34.615 15.13 0.00 36.56 1.94
184 185 7.009174 CCATTTCGGAAATATTCGTCCTTTTTG 59.991 37.037 15.13 0.62 36.56 2.44
185 186 6.563222 TTCGGAAATATTCGTCCTTTTTGT 57.437 33.333 4.96 0.00 0.00 2.83
186 187 5.933790 TCGGAAATATTCGTCCTTTTTGTG 58.066 37.500 4.96 0.00 0.00 3.33
187 188 5.701750 TCGGAAATATTCGTCCTTTTTGTGA 59.298 36.000 4.96 0.00 0.00 3.58
188 189 6.205076 TCGGAAATATTCGTCCTTTTTGTGAA 59.795 34.615 4.96 0.00 0.00 3.18
189 190 6.858993 CGGAAATATTCGTCCTTTTTGTGAAA 59.141 34.615 4.96 0.00 0.00 2.69
190 191 7.380065 CGGAAATATTCGTCCTTTTTGTGAAAA 59.620 33.333 4.96 0.00 33.86 2.29
191 192 9.036671 GGAAATATTCGTCCTTTTTGTGAAAAA 57.963 29.630 0.00 0.00 37.99 1.94
192 193 9.843874 GAAATATTCGTCCTTTTTGTGAAAAAC 57.156 29.630 0.00 0.00 35.57 2.43
193 194 8.934507 AATATTCGTCCTTTTTGTGAAAAACA 57.065 26.923 0.00 0.00 35.57 2.83
217 218 9.956720 ACACAAACATTTTTGAAATTTTGAACA 57.043 22.222 11.21 0.00 44.38 3.18
308 309 3.541996 AAAAAGGGAAAGCAACCAGTG 57.458 42.857 0.00 0.00 0.00 3.66
309 310 2.452600 AAAGGGAAAGCAACCAGTGA 57.547 45.000 0.00 0.00 0.00 3.41
310 311 2.683211 AAGGGAAAGCAACCAGTGAT 57.317 45.000 0.00 0.00 0.00 3.06
311 312 1.915141 AGGGAAAGCAACCAGTGATG 58.085 50.000 0.00 0.00 0.00 3.07
312 313 1.425066 AGGGAAAGCAACCAGTGATGA 59.575 47.619 0.00 0.00 0.00 2.92
313 314 2.158475 AGGGAAAGCAACCAGTGATGAA 60.158 45.455 0.00 0.00 0.00 2.57
314 315 2.229784 GGGAAAGCAACCAGTGATGAAG 59.770 50.000 0.00 0.00 0.00 3.02
315 316 3.149196 GGAAAGCAACCAGTGATGAAGA 58.851 45.455 0.00 0.00 0.00 2.87
316 317 3.569701 GGAAAGCAACCAGTGATGAAGAA 59.430 43.478 0.00 0.00 0.00 2.52
317 318 4.037923 GGAAAGCAACCAGTGATGAAGAAA 59.962 41.667 0.00 0.00 0.00 2.52
318 319 5.451798 GGAAAGCAACCAGTGATGAAGAAAA 60.452 40.000 0.00 0.00 0.00 2.29
319 320 4.843220 AGCAACCAGTGATGAAGAAAAG 57.157 40.909 0.00 0.00 0.00 2.27
320 321 4.464008 AGCAACCAGTGATGAAGAAAAGA 58.536 39.130 0.00 0.00 0.00 2.52
321 322 4.889409 AGCAACCAGTGATGAAGAAAAGAA 59.111 37.500 0.00 0.00 0.00 2.52
322 323 5.360714 AGCAACCAGTGATGAAGAAAAGAAA 59.639 36.000 0.00 0.00 0.00 2.52
323 324 6.042143 GCAACCAGTGATGAAGAAAAGAAAA 58.958 36.000 0.00 0.00 0.00 2.29
324 325 6.199719 GCAACCAGTGATGAAGAAAAGAAAAG 59.800 38.462 0.00 0.00 0.00 2.27
325 326 7.483307 CAACCAGTGATGAAGAAAAGAAAAGA 58.517 34.615 0.00 0.00 0.00 2.52
326 327 7.645058 ACCAGTGATGAAGAAAAGAAAAGAA 57.355 32.000 0.00 0.00 0.00 2.52
327 328 8.066612 ACCAGTGATGAAGAAAAGAAAAGAAA 57.933 30.769 0.00 0.00 0.00 2.52
328 329 8.531146 ACCAGTGATGAAGAAAAGAAAAGAAAA 58.469 29.630 0.00 0.00 0.00 2.29
329 330 9.538508 CCAGTGATGAAGAAAAGAAAAGAAAAT 57.461 29.630 0.00 0.00 0.00 1.82
370 371 5.515797 AAAAGAAAGAAGTTGTGCTACCC 57.484 39.130 0.00 0.00 0.00 3.69
371 372 3.857157 AGAAAGAAGTTGTGCTACCCA 57.143 42.857 0.00 0.00 0.00 4.51
372 373 3.744660 AGAAAGAAGTTGTGCTACCCAG 58.255 45.455 0.00 0.00 0.00 4.45
381 382 3.075005 GCTACCCAGCCGACCTGA 61.075 66.667 4.84 0.00 44.64 3.86
382 383 2.893398 CTACCCAGCCGACCTGAC 59.107 66.667 4.84 0.00 44.64 3.51
383 384 1.682684 CTACCCAGCCGACCTGACT 60.683 63.158 4.84 0.00 44.64 3.41
384 385 0.395311 CTACCCAGCCGACCTGACTA 60.395 60.000 4.84 0.00 44.64 2.59
385 386 0.260816 TACCCAGCCGACCTGACTAT 59.739 55.000 4.84 0.00 44.64 2.12
386 387 0.260816 ACCCAGCCGACCTGACTATA 59.739 55.000 4.84 0.00 44.64 1.31
387 388 0.962489 CCCAGCCGACCTGACTATAG 59.038 60.000 0.00 0.00 44.64 1.31
388 389 1.478837 CCCAGCCGACCTGACTATAGA 60.479 57.143 6.78 0.00 44.64 1.98
389 390 1.883275 CCAGCCGACCTGACTATAGAG 59.117 57.143 6.78 0.00 44.64 2.43
390 391 2.577700 CAGCCGACCTGACTATAGAGT 58.422 52.381 6.78 0.00 44.64 3.24
391 392 3.496337 CCAGCCGACCTGACTATAGAGTA 60.496 52.174 6.78 0.00 44.64 2.59
392 393 3.499157 CAGCCGACCTGACTATAGAGTAC 59.501 52.174 6.78 0.00 44.64 2.73
393 394 3.391955 AGCCGACCTGACTATAGAGTACT 59.608 47.826 6.78 0.00 35.45 2.73
394 395 3.747529 GCCGACCTGACTATAGAGTACTC 59.252 52.174 15.41 15.41 35.45 2.59
395 396 4.317488 CCGACCTGACTATAGAGTACTCC 58.683 52.174 19.38 3.52 35.45 3.85
396 397 4.040706 CCGACCTGACTATAGAGTACTCCT 59.959 50.000 19.38 9.79 35.45 3.69
397 398 5.245751 CCGACCTGACTATAGAGTACTCCTA 59.754 48.000 19.38 11.16 35.45 2.94
398 399 6.158598 CGACCTGACTATAGAGTACTCCTAC 58.841 48.000 19.38 6.27 35.45 3.18
399 400 6.015180 CGACCTGACTATAGAGTACTCCTACT 60.015 46.154 19.38 3.39 35.45 2.57
400 401 7.176515 CGACCTGACTATAGAGTACTCCTACTA 59.823 44.444 19.38 5.68 35.45 1.82
401 402 8.193953 ACCTGACTATAGAGTACTCCTACTAC 57.806 42.308 19.38 8.22 35.45 2.73
402 403 7.788867 ACCTGACTATAGAGTACTCCTACTACA 59.211 40.741 19.38 11.96 35.45 2.74
403 404 8.818860 CCTGACTATAGAGTACTCCTACTACAT 58.181 40.741 19.38 0.74 35.45 2.29
404 405 9.865321 CTGACTATAGAGTACTCCTACTACATC 57.135 40.741 19.38 7.87 35.45 3.06
405 406 9.377238 TGACTATAGAGTACTCCTACTACATCA 57.623 37.037 19.38 10.15 35.45 3.07
406 407 9.865321 GACTATAGAGTACTCCTACTACATCAG 57.135 40.741 19.38 5.24 35.45 2.90
407 408 9.604569 ACTATAGAGTACTCCTACTACATCAGA 57.395 37.037 19.38 0.00 32.96 3.27
411 412 8.880991 AGAGTACTCCTACTACATCAGAAAAA 57.119 34.615 19.38 0.00 32.96 1.94
433 434 3.921119 AAAATTGAGACAAGCATGCGA 57.079 38.095 13.01 0.00 0.00 5.10
434 435 3.921119 AAATTGAGACAAGCATGCGAA 57.079 38.095 13.01 0.00 0.00 4.70
435 436 3.482722 AATTGAGACAAGCATGCGAAG 57.517 42.857 13.01 8.77 0.00 3.79
452 453 3.732943 CGAAGCTTTATTGAACGGTCAC 58.267 45.455 0.44 0.00 31.90 3.67
453 454 3.185594 CGAAGCTTTATTGAACGGTCACA 59.814 43.478 0.44 0.00 31.90 3.58
454 455 4.319190 CGAAGCTTTATTGAACGGTCACAA 60.319 41.667 0.44 0.00 31.90 3.33
455 456 5.616866 CGAAGCTTTATTGAACGGTCACAAT 60.617 40.000 0.44 14.50 39.53 2.71
456 457 5.046910 AGCTTTATTGAACGGTCACAATG 57.953 39.130 0.44 4.12 37.32 2.82
457 458 4.518970 AGCTTTATTGAACGGTCACAATGT 59.481 37.500 0.44 0.00 37.32 2.71
458 459 5.009610 AGCTTTATTGAACGGTCACAATGTT 59.990 36.000 0.44 0.00 37.32 2.71
459 460 5.689961 GCTTTATTGAACGGTCACAATGTTT 59.310 36.000 0.44 2.35 37.32 2.83
460 461 6.200097 GCTTTATTGAACGGTCACAATGTTTT 59.800 34.615 0.44 2.09 37.32 2.43
461 462 7.380065 GCTTTATTGAACGGTCACAATGTTTTA 59.620 33.333 0.44 0.00 37.32 1.52
462 463 9.405587 CTTTATTGAACGGTCACAATGTTTTAT 57.594 29.630 0.44 0.00 37.32 1.40
465 466 7.499321 TTGAACGGTCACAATGTTTTATAGT 57.501 32.000 0.44 0.00 31.90 2.12
466 467 6.893759 TGAACGGTCACAATGTTTTATAGTG 58.106 36.000 0.00 0.00 0.00 2.74
467 468 6.706716 TGAACGGTCACAATGTTTTATAGTGA 59.293 34.615 0.00 0.00 36.92 3.41
473 474 8.587627 GTCACAATGTTTTATAGTGACGAATG 57.412 34.615 8.05 0.00 46.23 2.67
474 475 8.440059 GTCACAATGTTTTATAGTGACGAATGA 58.560 33.333 8.05 0.00 46.23 2.57
475 476 8.994170 TCACAATGTTTTATAGTGACGAATGAA 58.006 29.630 0.00 0.00 34.59 2.57
476 477 9.605955 CACAATGTTTTATAGTGACGAATGAAA 57.394 29.630 0.00 0.00 32.14 2.69
477 478 9.825972 ACAATGTTTTATAGTGACGAATGAAAG 57.174 29.630 0.00 0.00 0.00 2.62
481 482 9.430623 TGTTTTATAGTGACGAATGAAAGATGA 57.569 29.630 0.00 0.00 0.00 2.92
482 483 9.907576 GTTTTATAGTGACGAATGAAAGATGAG 57.092 33.333 0.00 0.00 0.00 2.90
483 484 7.700322 TTATAGTGACGAATGAAAGATGAGC 57.300 36.000 0.00 0.00 0.00 4.26
484 485 2.926200 AGTGACGAATGAAAGATGAGCG 59.074 45.455 0.00 0.00 0.00 5.03
485 486 2.029728 GTGACGAATGAAAGATGAGCGG 59.970 50.000 0.00 0.00 0.00 5.52
486 487 1.594862 GACGAATGAAAGATGAGCGGG 59.405 52.381 0.00 0.00 0.00 6.13
487 488 1.207089 ACGAATGAAAGATGAGCGGGA 59.793 47.619 0.00 0.00 0.00 5.14
488 489 2.158900 ACGAATGAAAGATGAGCGGGAT 60.159 45.455 0.00 0.00 0.00 3.85
489 490 2.222678 CGAATGAAAGATGAGCGGGATG 59.777 50.000 0.00 0.00 0.00 3.51
490 491 2.267174 ATGAAAGATGAGCGGGATGG 57.733 50.000 0.00 0.00 0.00 3.51
491 492 0.464373 TGAAAGATGAGCGGGATGGC 60.464 55.000 0.00 0.00 0.00 4.40
492 493 1.152881 AAAGATGAGCGGGATGGCC 60.153 57.895 0.00 0.00 0.00 5.36
493 494 1.639635 AAAGATGAGCGGGATGGCCT 61.640 55.000 3.32 0.00 0.00 5.19
494 495 0.764369 AAGATGAGCGGGATGGCCTA 60.764 55.000 3.32 0.00 0.00 3.93
495 496 0.764369 AGATGAGCGGGATGGCCTAA 60.764 55.000 3.32 0.00 0.00 2.69
496 497 0.603975 GATGAGCGGGATGGCCTAAC 60.604 60.000 3.32 0.00 0.00 2.34
497 498 2.056906 ATGAGCGGGATGGCCTAACC 62.057 60.000 3.32 4.47 39.84 2.85
509 510 3.752412 GGCCTAACCAAACATAACGAC 57.248 47.619 0.00 0.00 38.86 4.34
510 511 3.340928 GGCCTAACCAAACATAACGACT 58.659 45.455 0.00 0.00 38.86 4.18
511 512 4.506758 GGCCTAACCAAACATAACGACTA 58.493 43.478 0.00 0.00 38.86 2.59
512 513 4.937015 GGCCTAACCAAACATAACGACTAA 59.063 41.667 0.00 0.00 38.86 2.24
513 514 5.163824 GGCCTAACCAAACATAACGACTAAC 60.164 44.000 0.00 0.00 38.86 2.34
514 515 5.163824 GCCTAACCAAACATAACGACTAACC 60.164 44.000 0.00 0.00 0.00 2.85
515 516 5.352293 CCTAACCAAACATAACGACTAACCC 59.648 44.000 0.00 0.00 0.00 4.11
516 517 3.678289 ACCAAACATAACGACTAACCCC 58.322 45.455 0.00 0.00 0.00 4.95
517 518 3.328637 ACCAAACATAACGACTAACCCCT 59.671 43.478 0.00 0.00 0.00 4.79
518 519 4.531732 ACCAAACATAACGACTAACCCCTA 59.468 41.667 0.00 0.00 0.00 3.53
519 520 5.012975 ACCAAACATAACGACTAACCCCTAA 59.987 40.000 0.00 0.00 0.00 2.69
520 521 6.117488 CCAAACATAACGACTAACCCCTAAT 58.883 40.000 0.00 0.00 0.00 1.73
521 522 6.600427 CCAAACATAACGACTAACCCCTAATT 59.400 38.462 0.00 0.00 0.00 1.40
522 523 7.414762 CCAAACATAACGACTAACCCCTAATTG 60.415 40.741 0.00 0.00 0.00 2.32
523 524 6.549433 ACATAACGACTAACCCCTAATTGA 57.451 37.500 0.00 0.00 0.00 2.57
524 525 6.949715 ACATAACGACTAACCCCTAATTGAA 58.050 36.000 0.00 0.00 0.00 2.69
525 526 7.396418 ACATAACGACTAACCCCTAATTGAAA 58.604 34.615 0.00 0.00 0.00 2.69
526 527 8.050930 ACATAACGACTAACCCCTAATTGAAAT 58.949 33.333 0.00 0.00 0.00 2.17
527 528 6.753107 AACGACTAACCCCTAATTGAAATG 57.247 37.500 0.00 0.00 0.00 2.32
528 529 5.812286 ACGACTAACCCCTAATTGAAATGT 58.188 37.500 0.00 0.00 0.00 2.71
529 530 6.949715 ACGACTAACCCCTAATTGAAATGTA 58.050 36.000 0.00 0.00 0.00 2.29
530 531 7.571025 ACGACTAACCCCTAATTGAAATGTAT 58.429 34.615 0.00 0.00 0.00 2.29
531 532 8.707449 ACGACTAACCCCTAATTGAAATGTATA 58.293 33.333 0.00 0.00 0.00 1.47
532 533 8.985805 CGACTAACCCCTAATTGAAATGTATAC 58.014 37.037 0.00 0.00 0.00 1.47
536 537 8.446599 AACCCCTAATTGAAATGTATACTTCG 57.553 34.615 4.17 0.00 0.00 3.79
537 538 6.485648 ACCCCTAATTGAAATGTATACTTCGC 59.514 38.462 4.17 0.00 0.00 4.70
538 539 6.710744 CCCCTAATTGAAATGTATACTTCGCT 59.289 38.462 4.17 0.00 0.00 4.93
539 540 7.307989 CCCCTAATTGAAATGTATACTTCGCTG 60.308 40.741 4.17 0.00 0.00 5.18
540 541 7.307989 CCCTAATTGAAATGTATACTTCGCTGG 60.308 40.741 4.17 1.40 0.00 4.85
541 542 7.441157 CCTAATTGAAATGTATACTTCGCTGGA 59.559 37.037 4.17 0.00 0.00 3.86
542 543 7.807977 AATTGAAATGTATACTTCGCTGGAT 57.192 32.000 4.17 0.00 0.00 3.41
543 544 7.807977 ATTGAAATGTATACTTCGCTGGATT 57.192 32.000 4.17 0.00 0.00 3.01
544 545 6.603237 TGAAATGTATACTTCGCTGGATTG 57.397 37.500 4.17 0.00 0.00 2.67
545 546 6.112734 TGAAATGTATACTTCGCTGGATTGT 58.887 36.000 4.17 0.00 0.00 2.71
546 547 5.991328 AATGTATACTTCGCTGGATTGTG 57.009 39.130 4.17 0.00 0.00 3.33
547 548 4.729227 TGTATACTTCGCTGGATTGTGA 57.271 40.909 4.17 0.00 0.00 3.58
548 549 4.682787 TGTATACTTCGCTGGATTGTGAG 58.317 43.478 4.17 0.00 0.00 3.51
549 550 2.010145 TACTTCGCTGGATTGTGAGC 57.990 50.000 0.00 0.00 0.00 4.26
550 551 0.674895 ACTTCGCTGGATTGTGAGCC 60.675 55.000 0.00 0.00 30.98 4.70
551 552 0.392193 CTTCGCTGGATTGTGAGCCT 60.392 55.000 0.00 0.00 30.79 4.58
552 553 0.391661 TTCGCTGGATTGTGAGCCTC 60.392 55.000 0.00 0.00 30.79 4.70
553 554 1.078918 CGCTGGATTGTGAGCCTCA 60.079 57.895 0.00 0.00 30.79 3.86
554 555 0.674581 CGCTGGATTGTGAGCCTCAA 60.675 55.000 0.00 0.00 30.79 3.02
555 556 1.538047 GCTGGATTGTGAGCCTCAAA 58.462 50.000 0.00 0.00 30.79 2.69
556 557 1.888512 GCTGGATTGTGAGCCTCAAAA 59.111 47.619 0.00 0.00 30.79 2.44
557 558 2.494870 GCTGGATTGTGAGCCTCAAAAT 59.505 45.455 9.92 9.92 37.04 1.82
558 559 3.056322 GCTGGATTGTGAGCCTCAAAATT 60.056 43.478 11.38 0.00 34.60 1.82
559 560 4.741342 CTGGATTGTGAGCCTCAAAATTC 58.259 43.478 11.38 10.03 34.60 2.17
560 561 3.191162 TGGATTGTGAGCCTCAAAATTCG 59.809 43.478 11.38 0.00 34.60 3.34
561 562 3.440173 GGATTGTGAGCCTCAAAATTCGA 59.560 43.478 11.38 0.00 34.60 3.71
562 563 4.082787 GGATTGTGAGCCTCAAAATTCGAA 60.083 41.667 11.38 0.00 34.60 3.71
563 564 3.896648 TGTGAGCCTCAAAATTCGAAC 57.103 42.857 0.00 0.00 0.00 3.95
564 565 3.476552 TGTGAGCCTCAAAATTCGAACT 58.523 40.909 0.00 0.00 0.00 3.01
565 566 3.498397 TGTGAGCCTCAAAATTCGAACTC 59.502 43.478 0.00 0.24 0.00 3.01
566 567 3.074412 TGAGCCTCAAAATTCGAACTCC 58.926 45.455 0.00 0.00 0.00 3.85
567 568 3.244561 TGAGCCTCAAAATTCGAACTCCT 60.245 43.478 0.00 0.00 0.00 3.69
568 569 4.020573 TGAGCCTCAAAATTCGAACTCCTA 60.021 41.667 0.00 0.00 0.00 2.94
569 570 4.906618 AGCCTCAAAATTCGAACTCCTAA 58.093 39.130 0.00 0.00 0.00 2.69
570 571 5.313712 AGCCTCAAAATTCGAACTCCTAAA 58.686 37.500 0.00 0.00 0.00 1.85
571 572 5.181433 AGCCTCAAAATTCGAACTCCTAAAC 59.819 40.000 0.00 0.00 0.00 2.01
572 573 5.181433 GCCTCAAAATTCGAACTCCTAAACT 59.819 40.000 0.00 0.00 0.00 2.66
573 574 6.620949 GCCTCAAAATTCGAACTCCTAAACTC 60.621 42.308 0.00 0.00 0.00 3.01
574 575 6.426937 CCTCAAAATTCGAACTCCTAAACTCA 59.573 38.462 0.00 0.00 0.00 3.41
575 576 7.119846 CCTCAAAATTCGAACTCCTAAACTCAT 59.880 37.037 0.00 0.00 0.00 2.90
576 577 7.806690 TCAAAATTCGAACTCCTAAACTCATG 58.193 34.615 0.00 0.00 0.00 3.07
577 578 6.743575 AAATTCGAACTCCTAAACTCATGG 57.256 37.500 0.00 0.00 0.00 3.66
578 579 5.677319 ATTCGAACTCCTAAACTCATGGA 57.323 39.130 0.00 0.00 0.00 3.41
579 580 5.677319 TTCGAACTCCTAAACTCATGGAT 57.323 39.130 0.00 0.00 0.00 3.41
580 581 6.785337 TTCGAACTCCTAAACTCATGGATA 57.215 37.500 0.00 0.00 0.00 2.59
581 582 6.785337 TCGAACTCCTAAACTCATGGATAA 57.215 37.500 0.00 0.00 0.00 1.75
582 583 7.177832 TCGAACTCCTAAACTCATGGATAAA 57.822 36.000 0.00 0.00 0.00 1.40
583 584 7.617225 TCGAACTCCTAAACTCATGGATAAAA 58.383 34.615 0.00 0.00 0.00 1.52
584 585 8.265055 TCGAACTCCTAAACTCATGGATAAAAT 58.735 33.333 0.00 0.00 0.00 1.82
585 586 8.893727 CGAACTCCTAAACTCATGGATAAAATT 58.106 33.333 0.00 0.00 0.00 1.82
646 647 9.561069 CATATATAATAGCACCCTAAATGACCC 57.439 37.037 0.00 0.00 0.00 4.46
647 648 3.595190 AATAGCACCCTAAATGACCCC 57.405 47.619 0.00 0.00 0.00 4.95
648 649 1.974028 TAGCACCCTAAATGACCCCA 58.026 50.000 0.00 0.00 0.00 4.96
649 650 0.331616 AGCACCCTAAATGACCCCAC 59.668 55.000 0.00 0.00 0.00 4.61
650 651 0.331616 GCACCCTAAATGACCCCACT 59.668 55.000 0.00 0.00 0.00 4.00
651 652 1.682087 GCACCCTAAATGACCCCACTC 60.682 57.143 0.00 0.00 0.00 3.51
652 653 1.916181 CACCCTAAATGACCCCACTCT 59.084 52.381 0.00 0.00 0.00 3.24
653 654 2.308866 CACCCTAAATGACCCCACTCTT 59.691 50.000 0.00 0.00 0.00 2.85
654 655 2.576648 ACCCTAAATGACCCCACTCTTC 59.423 50.000 0.00 0.00 0.00 2.87
655 656 2.420129 CCCTAAATGACCCCACTCTTCG 60.420 54.545 0.00 0.00 0.00 3.79
656 657 2.420129 CCTAAATGACCCCACTCTTCGG 60.420 54.545 0.00 0.00 0.00 4.30
657 658 0.322546 AAATGACCCCACTCTTCGGC 60.323 55.000 0.00 0.00 0.00 5.54
658 659 1.201429 AATGACCCCACTCTTCGGCT 61.201 55.000 0.00 0.00 0.00 5.52
659 660 1.201429 ATGACCCCACTCTTCGGCTT 61.201 55.000 0.00 0.00 0.00 4.35
660 661 1.376037 GACCCCACTCTTCGGCTTG 60.376 63.158 0.00 0.00 0.00 4.01
661 662 1.827399 GACCCCACTCTTCGGCTTGA 61.827 60.000 0.00 0.00 0.00 3.02
662 663 1.201429 ACCCCACTCTTCGGCTTGAT 61.201 55.000 0.00 0.00 0.00 2.57
663 664 0.745845 CCCCACTCTTCGGCTTGATG 60.746 60.000 0.00 0.00 0.00 3.07
664 665 0.036010 CCCACTCTTCGGCTTGATGT 60.036 55.000 0.00 0.00 0.00 3.06
665 666 1.363744 CCACTCTTCGGCTTGATGTC 58.636 55.000 0.00 0.00 0.00 3.06
666 667 1.363744 CACTCTTCGGCTTGATGTCC 58.636 55.000 0.00 0.00 0.00 4.02
667 668 1.066573 CACTCTTCGGCTTGATGTCCT 60.067 52.381 0.00 0.00 0.00 3.85
668 669 1.205893 ACTCTTCGGCTTGATGTCCTC 59.794 52.381 0.00 0.00 0.00 3.71
669 670 0.173481 TCTTCGGCTTGATGTCCTCG 59.827 55.000 0.00 0.00 0.00 4.63
670 671 0.173481 CTTCGGCTTGATGTCCTCGA 59.827 55.000 0.00 0.00 0.00 4.04
671 672 0.824109 TTCGGCTTGATGTCCTCGAT 59.176 50.000 0.00 0.00 0.00 3.59
672 673 0.385751 TCGGCTTGATGTCCTCGATC 59.614 55.000 0.00 0.00 0.00 3.69
673 674 0.103026 CGGCTTGATGTCCTCGATCA 59.897 55.000 0.00 0.00 0.00 2.92
674 675 1.471501 CGGCTTGATGTCCTCGATCAA 60.472 52.381 0.00 0.00 37.46 2.57
675 676 1.936547 GGCTTGATGTCCTCGATCAAC 59.063 52.381 0.00 0.00 35.38 3.18
676 677 2.621338 GCTTGATGTCCTCGATCAACA 58.379 47.619 0.00 0.00 35.38 3.33
677 678 2.349886 GCTTGATGTCCTCGATCAACAC 59.650 50.000 0.00 0.00 35.38 3.32
678 679 2.672961 TGATGTCCTCGATCAACACC 57.327 50.000 0.00 0.00 0.00 4.16
679 680 2.179427 TGATGTCCTCGATCAACACCT 58.821 47.619 0.00 0.00 0.00 4.00
680 681 2.567169 TGATGTCCTCGATCAACACCTT 59.433 45.455 0.00 0.00 0.00 3.50
681 682 2.455674 TGTCCTCGATCAACACCTTG 57.544 50.000 0.00 0.00 0.00 3.61
682 683 1.079503 GTCCTCGATCAACACCTTGC 58.920 55.000 0.00 0.00 0.00 4.01
683 684 0.684535 TCCTCGATCAACACCTTGCA 59.315 50.000 0.00 0.00 0.00 4.08
684 685 1.071542 TCCTCGATCAACACCTTGCAA 59.928 47.619 0.00 0.00 0.00 4.08
685 686 2.086869 CCTCGATCAACACCTTGCAAT 58.913 47.619 0.00 0.00 0.00 3.56
686 687 2.096496 CCTCGATCAACACCTTGCAATC 59.904 50.000 0.00 0.00 0.00 2.67
687 688 3.005554 CTCGATCAACACCTTGCAATCT 58.994 45.455 0.00 0.00 0.00 2.40
688 689 2.743664 TCGATCAACACCTTGCAATCTG 59.256 45.455 0.00 0.30 0.00 2.90
689 690 2.743664 CGATCAACACCTTGCAATCTGA 59.256 45.455 0.00 0.00 0.00 3.27
690 691 3.376234 CGATCAACACCTTGCAATCTGAT 59.624 43.478 0.00 4.22 0.00 2.90
691 692 4.669318 GATCAACACCTTGCAATCTGATG 58.331 43.478 0.00 3.61 0.00 3.07
692 693 2.229543 TCAACACCTTGCAATCTGATGC 59.770 45.455 0.00 0.00 46.58 3.91
693 694 1.180029 ACACCTTGCAATCTGATGCC 58.820 50.000 0.00 0.00 45.83 4.40
694 695 0.458669 CACCTTGCAATCTGATGCCC 59.541 55.000 0.00 0.00 45.83 5.36
695 696 0.685458 ACCTTGCAATCTGATGCCCC 60.685 55.000 0.00 0.00 45.83 5.80
696 697 0.685131 CCTTGCAATCTGATGCCCCA 60.685 55.000 0.00 0.00 45.83 4.96
697 698 1.410004 CTTGCAATCTGATGCCCCAT 58.590 50.000 0.00 0.00 45.83 4.00
698 699 1.068588 CTTGCAATCTGATGCCCCATG 59.931 52.381 0.00 0.00 45.83 3.66
699 700 0.259356 TGCAATCTGATGCCCCATGA 59.741 50.000 0.00 0.00 45.83 3.07
700 701 1.342175 TGCAATCTGATGCCCCATGAA 60.342 47.619 0.00 0.00 45.83 2.57
701 702 1.968493 GCAATCTGATGCCCCATGAAT 59.032 47.619 0.00 0.00 40.49 2.57
702 703 2.288825 GCAATCTGATGCCCCATGAATG 60.289 50.000 0.00 0.00 40.49 2.67
703 704 5.426133 GCAATCTGATGCCCCATGAATGG 62.426 52.174 2.06 2.06 41.07 3.16
720 721 8.681486 CATGAATGGAATGTAGGTTCAGATAA 57.319 34.615 0.00 0.00 32.93 1.75
721 722 8.781196 CATGAATGGAATGTAGGTTCAGATAAG 58.219 37.037 0.00 0.00 32.93 1.73
722 723 8.089625 TGAATGGAATGTAGGTTCAGATAAGA 57.910 34.615 0.00 0.00 0.00 2.10
723 724 8.206867 TGAATGGAATGTAGGTTCAGATAAGAG 58.793 37.037 0.00 0.00 0.00 2.85
724 725 6.485830 TGGAATGTAGGTTCAGATAAGAGG 57.514 41.667 0.00 0.00 0.00 3.69
725 726 5.366768 TGGAATGTAGGTTCAGATAAGAGGG 59.633 44.000 0.00 0.00 0.00 4.30
726 727 5.367060 GGAATGTAGGTTCAGATAAGAGGGT 59.633 44.000 0.00 0.00 0.00 4.34
727 728 5.878406 ATGTAGGTTCAGATAAGAGGGTG 57.122 43.478 0.00 0.00 0.00 4.61
737 738 2.873557 TAAGAGGGTGGAGGGGCGAG 62.874 65.000 0.00 0.00 0.00 5.03
803 804 4.651008 GTCGTCGGCGTGGTTCCA 62.651 66.667 10.18 0.00 39.49 3.53
818 819 2.777536 TCCACACTGGATTGGCTCT 58.222 52.632 0.00 0.00 42.67 4.09
828 829 1.077930 ATTGGCTCTCATGTGCGCT 60.078 52.632 9.73 0.00 33.89 5.92
850 877 6.597614 GCTCTTGCATATACAAATGTAGAGC 58.402 40.000 18.34 18.34 45.43 4.09
851 878 7.719778 CTCTTGCATATACAAATGTAGAGCA 57.280 36.000 11.08 11.08 34.29 4.26
852 879 7.719778 TCTTGCATATACAAATGTAGAGCAG 57.280 36.000 13.37 10.01 37.06 4.24
853 880 7.500141 TCTTGCATATACAAATGTAGAGCAGA 58.500 34.615 13.37 11.35 37.06 4.26
855 882 5.698089 TGCATATACAAATGTAGAGCAGAGC 59.302 40.000 11.08 0.00 33.61 4.09
856 883 5.698089 GCATATACAAATGTAGAGCAGAGCA 59.302 40.000 0.00 0.00 33.52 4.26
857 884 6.347240 GCATATACAAATGTAGAGCAGAGCAC 60.347 42.308 0.00 0.00 33.52 4.40
858 885 2.704572 ACAAATGTAGAGCAGAGCACC 58.295 47.619 0.00 0.00 0.00 5.01
879 906 3.243367 CCCACTGATTGCGTTTTCTCAAA 60.243 43.478 0.00 0.00 0.00 2.69
886 913 5.748152 TGATTGCGTTTTCTCAAAGGAAAAG 59.252 36.000 3.13 0.00 43.12 2.27
887 914 4.974368 TGCGTTTTCTCAAAGGAAAAGA 57.026 36.364 3.13 0.00 43.12 2.52
888 915 4.920376 TGCGTTTTCTCAAAGGAAAAGAG 58.080 39.130 3.13 0.00 43.12 2.85
889 916 4.202010 TGCGTTTTCTCAAAGGAAAAGAGG 60.202 41.667 3.13 0.00 43.12 3.69
890 917 4.290969 CGTTTTCTCAAAGGAAAAGAGGC 58.709 43.478 3.13 0.00 43.12 4.70
891 918 4.621991 GTTTTCTCAAAGGAAAAGAGGCC 58.378 43.478 0.00 0.00 43.12 5.19
892 919 3.593442 TTCTCAAAGGAAAAGAGGCCA 57.407 42.857 5.01 0.00 0.00 5.36
893 920 3.146104 TCTCAAAGGAAAAGAGGCCAG 57.854 47.619 5.01 0.00 0.00 4.85
918 945 1.810412 GCCAGTTGACCTGTTCTTCGT 60.810 52.381 0.00 0.00 39.74 3.85
949 990 1.470979 GCCACGCTATATACGGATGGG 60.471 57.143 0.00 0.00 34.00 4.00
950 991 2.097036 CCACGCTATATACGGATGGGA 58.903 52.381 0.00 0.00 34.00 4.37
952 993 3.132289 CCACGCTATATACGGATGGGAAT 59.868 47.826 0.00 0.00 34.00 3.01
953 994 4.382685 CCACGCTATATACGGATGGGAATT 60.383 45.833 0.00 0.00 34.00 2.17
954 995 4.566759 CACGCTATATACGGATGGGAATTG 59.433 45.833 0.00 0.00 34.00 2.32
955 996 4.119862 CGCTATATACGGATGGGAATTGG 58.880 47.826 0.00 0.00 0.00 3.16
959 1000 3.508845 ATACGGATGGGAATTGGGAAG 57.491 47.619 0.00 0.00 0.00 3.46
960 1001 0.258774 ACGGATGGGAATTGGGAAGG 59.741 55.000 0.00 0.00 0.00 3.46
961 1002 0.468029 CGGATGGGAATTGGGAAGGG 60.468 60.000 0.00 0.00 0.00 3.95
1342 1390 1.133199 ACAACAAGGGGAAAGGCATGA 60.133 47.619 0.00 0.00 0.00 3.07
1371 1419 4.171103 GCCGGCTACCCATCGGTT 62.171 66.667 22.15 0.00 40.58 4.44
1636 1687 0.035458 CGTTTCCAGCCTTCTGTCCT 59.965 55.000 0.00 0.00 38.66 3.85
1912 1984 0.106708 GACACTGTTCCTGGTGCTCA 59.893 55.000 0.00 0.00 36.99 4.26
1939 2014 3.120792 GTCGCCGCAGTAATCTTGATAA 58.879 45.455 0.00 0.00 0.00 1.75
1943 2018 4.372656 GCCGCAGTAATCTTGATAAGTCT 58.627 43.478 0.00 0.00 0.00 3.24
1983 2061 0.251832 AGCGAGAGGTTGAGGAGGAA 60.252 55.000 0.00 0.00 40.01 3.36
2115 2193 3.141488 GCGGAGGAGAAGCTCGGA 61.141 66.667 0.00 0.00 0.00 4.55
2332 2419 1.068250 GTCTACGAGCTCATGCCCC 59.932 63.158 15.40 0.00 40.80 5.80
2349 2436 2.360350 CACCGCAGCCTGGACATT 60.360 61.111 0.00 0.00 0.00 2.71
2444 2569 8.164058 TGAAATTAATCGGCATGAATCATGTA 57.836 30.769 22.50 10.50 43.10 2.29
2476 2601 7.754851 ATATATGTTGATGATTCTTGCTGCA 57.245 32.000 0.00 0.00 0.00 4.41
2477 2602 6.650427 ATATGTTGATGATTCTTGCTGCAT 57.350 33.333 1.84 0.00 0.00 3.96
2478 2603 4.104696 TGTTGATGATTCTTGCTGCATG 57.895 40.909 1.84 6.12 0.00 4.06
2759 2887 1.279527 CGACGTTTACAGCTTCGGCA 61.280 55.000 0.00 0.00 44.74 5.69
3127 3273 2.535984 GTCTTCGTTCAGTGTGACACAG 59.464 50.000 18.95 10.38 36.74 3.66
3128 3274 2.165641 TCTTCGTTCAGTGTGACACAGT 59.834 45.455 18.95 9.65 36.74 3.55
3129 3275 2.203800 TCGTTCAGTGTGACACAGTC 57.796 50.000 18.95 7.15 36.74 3.51
3130 3276 0.846401 CGTTCAGTGTGACACAGTCG 59.154 55.000 18.95 14.43 36.74 4.18
3131 3277 1.533129 CGTTCAGTGTGACACAGTCGA 60.533 52.381 18.95 11.20 36.74 4.20
3132 3278 1.852895 GTTCAGTGTGACACAGTCGAC 59.147 52.381 18.95 7.70 36.74 4.20
3326 3491 5.452777 CGTTGAATTTTCTTCCCTGAAGAC 58.547 41.667 6.05 0.00 46.54 3.01
3340 3505 5.012768 TCCCTGAAGACGACCTTTTCTTTAT 59.987 40.000 0.00 0.00 34.68 1.40
3343 3508 4.387862 TGAAGACGACCTTTTCTTTATCGC 59.612 41.667 0.00 0.00 36.26 4.58
3366 3531 0.850856 CCGATTCGCTTAGTTACGCC 59.149 55.000 0.00 0.00 0.00 5.68
3379 3544 2.581208 TTACGCCACGTGCCCATAGG 62.581 60.000 10.91 0.00 41.39 2.57
3451 7046 1.583054 GCCAAGCCGTCTAGTTATGG 58.417 55.000 0.00 0.00 0.00 2.74
3452 7047 1.134491 GCCAAGCCGTCTAGTTATGGT 60.134 52.381 0.00 0.00 0.00 3.55
3457 7052 2.091775 AGCCGTCTAGTTATGGTCCTCT 60.092 50.000 0.00 0.00 0.00 3.69
3523 7118 2.633488 CTAGGAGCAACTTTACCTGGC 58.367 52.381 0.00 0.00 34.42 4.85
3569 7164 2.928694 TCGCCGCAAAATTTCTCTTTC 58.071 42.857 0.00 0.00 0.00 2.62
3588 7183 8.522003 TCTCTTTCATTTACAAATTGCTATGCA 58.478 29.630 0.00 0.00 36.47 3.96
3681 7292 3.622060 AATGTCAACCCCGCCCGAG 62.622 63.158 0.00 0.00 0.00 4.63
3712 7323 6.270000 TCCATCAGATATTACGGTCATTTCCT 59.730 38.462 0.00 0.00 0.00 3.36
3715 7330 8.840321 CATCAGATATTACGGTCATTTCCTTTT 58.160 33.333 0.00 0.00 0.00 2.27
3716 7331 8.801882 TCAGATATTACGGTCATTTCCTTTTT 57.198 30.769 0.00 0.00 0.00 1.94
3728 7343 9.981114 GGTCATTTCCTTTTTATACATTATGGG 57.019 33.333 0.00 0.00 0.00 4.00
3745 7360 9.225682 ACATTATGGGTATATTATCCTACTGGG 57.774 37.037 0.00 0.00 0.00 4.45
3797 7412 2.053747 TTCCCTTGAGTGTGGGGTAT 57.946 50.000 0.00 0.00 43.51 2.73
3816 7431 4.337274 GGTATAATGGTTAGTGGTGTTGCC 59.663 45.833 0.00 0.00 37.90 4.52
3835 7450 3.449377 TGCCGATGTACTATTGTCTGGAA 59.551 43.478 0.00 0.00 0.00 3.53
3845 7463 8.924303 TGTACTATTGTCTGGAAGTTATGCTAT 58.076 33.333 0.00 0.00 33.76 2.97
3920 7819 4.837093 TCTTCAAGGATAATCCCAACGT 57.163 40.909 0.00 0.00 37.19 3.99
3930 7829 5.455612 GGATAATCCCAACGTCCTTAATCCA 60.456 44.000 0.00 0.00 0.00 3.41
4066 7969 8.675705 TTCTTCTTGTGTCTCATGTTCATTTA 57.324 30.769 0.00 0.00 0.00 1.40
4080 7983 7.962373 TCATGTTCATTTATTGTTGCTTAGTCG 59.038 33.333 0.00 0.00 0.00 4.18
4105 8008 6.381801 ACATTTTGGCTGTTAGATTTTCTCG 58.618 36.000 0.00 0.00 0.00 4.04
4120 8023 8.928270 AGATTTTCTCGTATATTTGTTCGTCT 57.072 30.769 0.00 0.00 0.00 4.18
4126 8029 5.957798 TCGTATATTTGTTCGTCTTGGAGT 58.042 37.500 0.00 0.00 0.00 3.85
4148 8052 0.795698 TTGATGTTGCGATCGTGTGG 59.204 50.000 17.81 0.00 0.00 4.17
4213 8117 8.929487 ACATTCCTTAAATTTGGGTAAGTTGAA 58.071 29.630 0.00 0.00 0.00 2.69
4222 8126 8.445275 AATTTGGGTAAGTTGAATTTTTGACC 57.555 30.769 0.00 0.00 0.00 4.02
4224 8128 4.645588 TGGGTAAGTTGAATTTTTGACCGT 59.354 37.500 0.00 0.00 0.00 4.83
4225 8129 5.127356 TGGGTAAGTTGAATTTTTGACCGTT 59.873 36.000 0.00 0.00 0.00 4.44
4234 8138 7.692908 TGAATTTTTGACCGTTGATTCTTTC 57.307 32.000 0.00 0.00 0.00 2.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.949578 AATGTTTCGGATGCTTAAAACATG 57.050 33.333 16.88 0.00 46.26 3.21
2 3 7.778470 AAAAATGTTTCGGATGCTTAAAACA 57.222 28.000 10.29 10.29 43.44 2.83
121 122 6.931243 AAAGACGTTCGCAAGTTTTAAAAA 57.069 29.167 1.31 0.00 39.48 1.94
122 123 6.581542 TCAAAAGACGTTCGCAAGTTTTAAAA 59.418 30.769 0.00 0.00 39.48 1.52
123 124 6.084925 TCAAAAGACGTTCGCAAGTTTTAAA 58.915 32.000 0.00 0.00 39.48 1.52
124 125 5.629097 TCAAAAGACGTTCGCAAGTTTTAA 58.371 33.333 0.00 0.00 39.48 1.52
125 126 5.219226 TCAAAAGACGTTCGCAAGTTTTA 57.781 34.783 0.00 0.00 39.48 1.52
126 127 4.086199 TCAAAAGACGTTCGCAAGTTTT 57.914 36.364 0.00 0.00 39.48 2.43
127 128 3.750639 TCAAAAGACGTTCGCAAGTTT 57.249 38.095 0.00 0.00 39.48 2.66
128 129 3.750639 TTCAAAAGACGTTCGCAAGTT 57.249 38.095 0.00 0.00 39.48 2.66
129 130 3.750639 TTTCAAAAGACGTTCGCAAGT 57.249 38.095 0.00 0.00 39.48 3.16
130 131 4.322274 TGTTTTTCAAAAGACGTTCGCAAG 59.678 37.500 0.00 0.00 0.00 4.01
131 132 4.088781 GTGTTTTTCAAAAGACGTTCGCAA 59.911 37.500 0.00 0.00 33.41 4.85
132 133 3.604627 GTGTTTTTCAAAAGACGTTCGCA 59.395 39.130 0.00 0.00 33.41 5.10
133 134 4.146359 GTGTTTTTCAAAAGACGTTCGC 57.854 40.909 0.00 0.00 33.41 4.70
139 140 6.641176 AATGGTTCGTGTTTTTCAAAAGAC 57.359 33.333 2.88 2.88 38.40 3.01
140 141 7.284518 GAAATGGTTCGTGTTTTTCAAAAGA 57.715 32.000 0.00 0.00 0.00 2.52
155 156 5.296035 AGGACGAATATTTCCGAAATGGTTC 59.704 40.000 15.37 15.96 39.52 3.62
156 157 5.190677 AGGACGAATATTTCCGAAATGGTT 58.809 37.500 15.37 10.29 39.52 3.67
157 158 4.777463 AGGACGAATATTTCCGAAATGGT 58.223 39.130 15.37 8.45 39.52 3.55
158 159 5.751243 AAGGACGAATATTTCCGAAATGG 57.249 39.130 15.37 5.80 36.95 3.16
159 160 7.540745 ACAAAAAGGACGAATATTTCCGAAATG 59.459 33.333 15.37 2.63 36.95 2.32
160 161 7.540745 CACAAAAAGGACGAATATTTCCGAAAT 59.459 33.333 11.09 11.09 36.95 2.17
161 162 6.858993 CACAAAAAGGACGAATATTTCCGAAA 59.141 34.615 3.79 0.00 36.95 3.46
162 163 6.205076 TCACAAAAAGGACGAATATTTCCGAA 59.795 34.615 3.79 0.00 36.95 4.30
163 164 5.701750 TCACAAAAAGGACGAATATTTCCGA 59.298 36.000 3.79 0.00 36.95 4.55
164 165 5.933790 TCACAAAAAGGACGAATATTTCCG 58.066 37.500 0.00 0.00 36.95 4.30
165 166 8.582433 TTTTCACAAAAAGGACGAATATTTCC 57.418 30.769 0.00 0.00 30.90 3.13
166 167 9.843874 GTTTTTCACAAAAAGGACGAATATTTC 57.156 29.630 0.00 0.00 40.71 2.17
167 168 9.372369 TGTTTTTCACAAAAAGGACGAATATTT 57.628 25.926 0.00 0.00 40.71 1.40
168 169 8.813282 GTGTTTTTCACAAAAAGGACGAATATT 58.187 29.630 0.00 0.00 45.51 1.28
169 170 8.347729 GTGTTTTTCACAAAAAGGACGAATAT 57.652 30.769 0.00 0.00 45.51 1.28
170 171 7.743520 GTGTTTTTCACAAAAAGGACGAATA 57.256 32.000 0.00 0.00 45.51 1.75
171 172 6.641176 GTGTTTTTCACAAAAAGGACGAAT 57.359 33.333 0.00 0.00 45.51 3.34
191 192 9.956720 TGTTCAAAATTTCAAAAATGTTTGTGT 57.043 22.222 8.22 0.00 43.90 3.72
288 289 3.103742 TCACTGGTTGCTTTCCCTTTTT 58.896 40.909 0.00 0.00 0.00 1.94
289 290 2.745968 TCACTGGTTGCTTTCCCTTTT 58.254 42.857 0.00 0.00 0.00 2.27
290 291 2.452600 TCACTGGTTGCTTTCCCTTT 57.547 45.000 0.00 0.00 0.00 3.11
291 292 2.158475 TCATCACTGGTTGCTTTCCCTT 60.158 45.455 0.00 0.00 0.00 3.95
292 293 1.425066 TCATCACTGGTTGCTTTCCCT 59.575 47.619 0.00 0.00 0.00 4.20
293 294 1.909700 TCATCACTGGTTGCTTTCCC 58.090 50.000 0.00 0.00 0.00 3.97
294 295 3.149196 TCTTCATCACTGGTTGCTTTCC 58.851 45.455 0.00 0.00 0.00 3.13
295 296 4.836125 TTCTTCATCACTGGTTGCTTTC 57.164 40.909 0.00 0.00 0.00 2.62
296 297 5.360714 TCTTTTCTTCATCACTGGTTGCTTT 59.639 36.000 0.00 0.00 0.00 3.51
297 298 4.889409 TCTTTTCTTCATCACTGGTTGCTT 59.111 37.500 0.00 0.00 0.00 3.91
298 299 4.464008 TCTTTTCTTCATCACTGGTTGCT 58.536 39.130 0.00 0.00 0.00 3.91
299 300 4.836125 TCTTTTCTTCATCACTGGTTGC 57.164 40.909 0.00 0.00 0.00 4.17
300 301 7.483307 TCTTTTCTTTTCTTCATCACTGGTTG 58.517 34.615 0.00 0.00 0.00 3.77
301 302 7.645058 TCTTTTCTTTTCTTCATCACTGGTT 57.355 32.000 0.00 0.00 0.00 3.67
302 303 7.645058 TTCTTTTCTTTTCTTCATCACTGGT 57.355 32.000 0.00 0.00 0.00 4.00
303 304 8.931385 TTTTCTTTTCTTTTCTTCATCACTGG 57.069 30.769 0.00 0.00 0.00 4.00
347 348 5.420739 TGGGTAGCACAACTTCTTTCTTTTT 59.579 36.000 0.00 0.00 0.00 1.94
348 349 4.953579 TGGGTAGCACAACTTCTTTCTTTT 59.046 37.500 0.00 0.00 0.00 2.27
349 350 4.532834 TGGGTAGCACAACTTCTTTCTTT 58.467 39.130 0.00 0.00 0.00 2.52
350 351 4.137543 CTGGGTAGCACAACTTCTTTCTT 58.862 43.478 0.00 0.00 0.00 2.52
351 352 3.744660 CTGGGTAGCACAACTTCTTTCT 58.255 45.455 0.00 0.00 0.00 2.52
365 366 0.395311 TAGTCAGGTCGGCTGGGTAG 60.395 60.000 0.00 0.00 0.00 3.18
366 367 0.260816 ATAGTCAGGTCGGCTGGGTA 59.739 55.000 0.00 0.00 0.00 3.69
367 368 0.260816 TATAGTCAGGTCGGCTGGGT 59.739 55.000 0.00 0.00 0.00 4.51
368 369 0.962489 CTATAGTCAGGTCGGCTGGG 59.038 60.000 0.00 0.00 0.00 4.45
369 370 1.883275 CTCTATAGTCAGGTCGGCTGG 59.117 57.143 0.00 0.00 0.00 4.85
370 371 2.577700 ACTCTATAGTCAGGTCGGCTG 58.422 52.381 0.00 0.00 0.00 4.85
371 372 3.391955 AGTACTCTATAGTCAGGTCGGCT 59.608 47.826 0.00 0.00 37.15 5.52
372 373 3.742385 AGTACTCTATAGTCAGGTCGGC 58.258 50.000 0.00 0.00 37.15 5.54
373 374 4.040706 AGGAGTACTCTATAGTCAGGTCGG 59.959 50.000 21.88 0.00 37.15 4.79
374 375 5.217978 AGGAGTACTCTATAGTCAGGTCG 57.782 47.826 21.88 0.00 37.15 4.79
375 376 7.307131 AGTAGGAGTACTCTATAGTCAGGTC 57.693 44.000 21.88 1.35 34.00 3.85
376 377 7.788867 TGTAGTAGGAGTACTCTATAGTCAGGT 59.211 40.741 21.88 0.28 40.23 4.00
377 378 8.192743 TGTAGTAGGAGTACTCTATAGTCAGG 57.807 42.308 21.88 0.00 40.23 3.86
378 379 9.865321 GATGTAGTAGGAGTACTCTATAGTCAG 57.135 40.741 21.88 0.00 40.23 3.51
379 380 9.377238 TGATGTAGTAGGAGTACTCTATAGTCA 57.623 37.037 21.88 14.46 40.23 3.41
380 381 9.865321 CTGATGTAGTAGGAGTACTCTATAGTC 57.135 40.741 21.88 10.67 40.23 2.59
381 382 9.604569 TCTGATGTAGTAGGAGTACTCTATAGT 57.395 37.037 21.88 18.13 40.23 2.12
385 386 9.970553 TTTTTCTGATGTAGTAGGAGTACTCTA 57.029 33.333 21.88 9.87 40.23 2.43
386 387 8.880991 TTTTTCTGATGTAGTAGGAGTACTCT 57.119 34.615 21.88 10.81 40.23 3.24
412 413 4.241590 TCGCATGCTTGTCTCAATTTTT 57.758 36.364 17.13 0.00 0.00 1.94
413 414 3.921119 TCGCATGCTTGTCTCAATTTT 57.079 38.095 17.13 0.00 0.00 1.82
414 415 3.829948 CTTCGCATGCTTGTCTCAATTT 58.170 40.909 17.13 0.00 0.00 1.82
415 416 2.415090 GCTTCGCATGCTTGTCTCAATT 60.415 45.455 17.13 0.00 0.00 2.32
416 417 1.131883 GCTTCGCATGCTTGTCTCAAT 59.868 47.619 17.13 0.00 0.00 2.57
417 418 0.518636 GCTTCGCATGCTTGTCTCAA 59.481 50.000 17.13 0.00 0.00 3.02
418 419 0.321034 AGCTTCGCATGCTTGTCTCA 60.321 50.000 17.13 0.00 37.52 3.27
419 420 2.464682 AGCTTCGCATGCTTGTCTC 58.535 52.632 17.13 0.00 37.52 3.36
420 421 4.709840 AGCTTCGCATGCTTGTCT 57.290 50.000 17.13 4.89 37.52 3.41
425 426 3.728864 CGTTCAATAAAGCTTCGCATGCT 60.729 43.478 17.13 0.00 43.32 3.79
426 427 2.527487 CGTTCAATAAAGCTTCGCATGC 59.473 45.455 7.91 7.91 0.00 4.06
427 428 3.100817 CCGTTCAATAAAGCTTCGCATG 58.899 45.455 0.00 0.00 0.00 4.06
428 429 2.747446 ACCGTTCAATAAAGCTTCGCAT 59.253 40.909 0.00 0.00 0.00 4.73
429 430 2.147958 ACCGTTCAATAAAGCTTCGCA 58.852 42.857 0.00 0.00 0.00 5.10
430 431 2.158841 TGACCGTTCAATAAAGCTTCGC 59.841 45.455 0.00 0.00 0.00 4.70
431 432 3.185594 TGTGACCGTTCAATAAAGCTTCG 59.814 43.478 0.00 0.00 31.90 3.79
432 433 4.742438 TGTGACCGTTCAATAAAGCTTC 57.258 40.909 0.00 0.00 31.90 3.86
433 434 5.009610 ACATTGTGACCGTTCAATAAAGCTT 59.990 36.000 0.00 0.00 33.69 3.74
434 435 4.518970 ACATTGTGACCGTTCAATAAAGCT 59.481 37.500 0.00 0.00 33.69 3.74
435 436 4.794169 ACATTGTGACCGTTCAATAAAGC 58.206 39.130 0.00 0.00 33.69 3.51
436 437 7.692908 AAAACATTGTGACCGTTCAATAAAG 57.307 32.000 0.00 0.00 33.69 1.85
439 440 9.221933 ACTATAAAACATTGTGACCGTTCAATA 57.778 29.630 0.00 0.00 33.69 1.90
440 441 8.020819 CACTATAAAACATTGTGACCGTTCAAT 58.979 33.333 0.00 0.00 35.08 2.57
441 442 7.226918 TCACTATAAAACATTGTGACCGTTCAA 59.773 33.333 0.00 0.00 33.45 2.69
442 443 6.706716 TCACTATAAAACATTGTGACCGTTCA 59.293 34.615 0.00 0.00 33.45 3.18
443 444 7.013529 GTCACTATAAAACATTGTGACCGTTC 58.986 38.462 16.18 0.00 46.66 3.95
444 445 6.894828 GTCACTATAAAACATTGTGACCGTT 58.105 36.000 16.18 0.00 46.66 4.44
445 446 6.476243 GTCACTATAAAACATTGTGACCGT 57.524 37.500 16.18 0.00 46.66 4.83
449 450 8.541133 TCATTCGTCACTATAAAACATTGTGA 57.459 30.769 0.00 0.00 35.62 3.58
450 451 9.605955 TTTCATTCGTCACTATAAAACATTGTG 57.394 29.630 0.00 0.00 0.00 3.33
451 452 9.825972 CTTTCATTCGTCACTATAAAACATTGT 57.174 29.630 0.00 0.00 0.00 2.71
455 456 9.430623 TCATCTTTCATTCGTCACTATAAAACA 57.569 29.630 0.00 0.00 0.00 2.83
456 457 9.907576 CTCATCTTTCATTCGTCACTATAAAAC 57.092 33.333 0.00 0.00 0.00 2.43
457 458 8.604035 GCTCATCTTTCATTCGTCACTATAAAA 58.396 33.333 0.00 0.00 0.00 1.52
458 459 7.043391 CGCTCATCTTTCATTCGTCACTATAAA 60.043 37.037 0.00 0.00 0.00 1.40
459 460 6.417930 CGCTCATCTTTCATTCGTCACTATAA 59.582 38.462 0.00 0.00 0.00 0.98
460 461 5.915196 CGCTCATCTTTCATTCGTCACTATA 59.085 40.000 0.00 0.00 0.00 1.31
461 462 4.742167 CGCTCATCTTTCATTCGTCACTAT 59.258 41.667 0.00 0.00 0.00 2.12
462 463 4.105486 CGCTCATCTTTCATTCGTCACTA 58.895 43.478 0.00 0.00 0.00 2.74
463 464 2.926200 CGCTCATCTTTCATTCGTCACT 59.074 45.455 0.00 0.00 0.00 3.41
464 465 2.029728 CCGCTCATCTTTCATTCGTCAC 59.970 50.000 0.00 0.00 0.00 3.67
465 466 2.270923 CCGCTCATCTTTCATTCGTCA 58.729 47.619 0.00 0.00 0.00 4.35
466 467 1.594862 CCCGCTCATCTTTCATTCGTC 59.405 52.381 0.00 0.00 0.00 4.20
467 468 1.207089 TCCCGCTCATCTTTCATTCGT 59.793 47.619 0.00 0.00 0.00 3.85
468 469 1.939974 TCCCGCTCATCTTTCATTCG 58.060 50.000 0.00 0.00 0.00 3.34
469 470 2.551459 CCATCCCGCTCATCTTTCATTC 59.449 50.000 0.00 0.00 0.00 2.67
470 471 2.579873 CCATCCCGCTCATCTTTCATT 58.420 47.619 0.00 0.00 0.00 2.57
471 472 1.816961 GCCATCCCGCTCATCTTTCAT 60.817 52.381 0.00 0.00 0.00 2.57
472 473 0.464373 GCCATCCCGCTCATCTTTCA 60.464 55.000 0.00 0.00 0.00 2.69
473 474 1.169034 GGCCATCCCGCTCATCTTTC 61.169 60.000 0.00 0.00 0.00 2.62
474 475 1.152881 GGCCATCCCGCTCATCTTT 60.153 57.895 0.00 0.00 0.00 2.52
475 476 0.764369 TAGGCCATCCCGCTCATCTT 60.764 55.000 5.01 0.00 39.21 2.40
476 477 0.764369 TTAGGCCATCCCGCTCATCT 60.764 55.000 5.01 0.00 39.21 2.90
477 478 0.603975 GTTAGGCCATCCCGCTCATC 60.604 60.000 5.01 0.00 39.21 2.92
478 479 1.451936 GTTAGGCCATCCCGCTCAT 59.548 57.895 5.01 0.00 39.21 2.90
479 480 2.742116 GGTTAGGCCATCCCGCTCA 61.742 63.158 5.01 0.00 39.21 4.26
480 481 2.111251 GGTTAGGCCATCCCGCTC 59.889 66.667 5.01 0.00 39.21 5.03
481 482 2.690881 TGGTTAGGCCATCCCGCT 60.691 61.111 5.01 0.00 43.61 5.52
489 490 3.340928 AGTCGTTATGTTTGGTTAGGCC 58.659 45.455 0.00 0.00 37.90 5.19
490 491 5.163824 GGTTAGTCGTTATGTTTGGTTAGGC 60.164 44.000 0.00 0.00 0.00 3.93
491 492 5.352293 GGGTTAGTCGTTATGTTTGGTTAGG 59.648 44.000 0.00 0.00 0.00 2.69
492 493 5.352293 GGGGTTAGTCGTTATGTTTGGTTAG 59.648 44.000 0.00 0.00 0.00 2.34
493 494 5.012975 AGGGGTTAGTCGTTATGTTTGGTTA 59.987 40.000 0.00 0.00 0.00 2.85
494 495 4.074259 GGGGTTAGTCGTTATGTTTGGTT 58.926 43.478 0.00 0.00 0.00 3.67
495 496 3.328637 AGGGGTTAGTCGTTATGTTTGGT 59.671 43.478 0.00 0.00 0.00 3.67
496 497 3.946606 AGGGGTTAGTCGTTATGTTTGG 58.053 45.455 0.00 0.00 0.00 3.28
497 498 7.334921 TCAATTAGGGGTTAGTCGTTATGTTTG 59.665 37.037 0.00 0.00 0.00 2.93
498 499 7.396418 TCAATTAGGGGTTAGTCGTTATGTTT 58.604 34.615 0.00 0.00 0.00 2.83
499 500 6.949715 TCAATTAGGGGTTAGTCGTTATGTT 58.050 36.000 0.00 0.00 0.00 2.71
500 501 6.549433 TCAATTAGGGGTTAGTCGTTATGT 57.451 37.500 0.00 0.00 0.00 2.29
501 502 7.852971 TTTCAATTAGGGGTTAGTCGTTATG 57.147 36.000 0.00 0.00 0.00 1.90
502 503 8.050930 ACATTTCAATTAGGGGTTAGTCGTTAT 58.949 33.333 0.00 0.00 0.00 1.89
503 504 7.396418 ACATTTCAATTAGGGGTTAGTCGTTA 58.604 34.615 0.00 0.00 0.00 3.18
504 505 6.243148 ACATTTCAATTAGGGGTTAGTCGTT 58.757 36.000 0.00 0.00 0.00 3.85
505 506 5.812286 ACATTTCAATTAGGGGTTAGTCGT 58.188 37.500 0.00 0.00 0.00 4.34
506 507 8.985805 GTATACATTTCAATTAGGGGTTAGTCG 58.014 37.037 0.00 0.00 0.00 4.18
510 511 9.550406 CGAAGTATACATTTCAATTAGGGGTTA 57.450 33.333 5.50 0.00 0.00 2.85
511 512 7.012989 GCGAAGTATACATTTCAATTAGGGGTT 59.987 37.037 5.50 0.00 0.00 4.11
512 513 6.485648 GCGAAGTATACATTTCAATTAGGGGT 59.514 38.462 5.50 0.00 0.00 4.95
513 514 6.710744 AGCGAAGTATACATTTCAATTAGGGG 59.289 38.462 5.50 0.00 0.00 4.79
514 515 7.307989 CCAGCGAAGTATACATTTCAATTAGGG 60.308 40.741 5.50 0.00 0.00 3.53
515 516 7.441157 TCCAGCGAAGTATACATTTCAATTAGG 59.559 37.037 5.50 0.56 0.00 2.69
516 517 8.365399 TCCAGCGAAGTATACATTTCAATTAG 57.635 34.615 5.50 0.00 0.00 1.73
517 518 8.902540 ATCCAGCGAAGTATACATTTCAATTA 57.097 30.769 5.50 0.00 0.00 1.40
518 519 7.807977 ATCCAGCGAAGTATACATTTCAATT 57.192 32.000 5.50 0.00 0.00 2.32
519 520 7.283127 ACAATCCAGCGAAGTATACATTTCAAT 59.717 33.333 5.50 0.00 0.00 2.57
520 521 6.597672 ACAATCCAGCGAAGTATACATTTCAA 59.402 34.615 5.50 0.00 0.00 2.69
521 522 6.037062 CACAATCCAGCGAAGTATACATTTCA 59.963 38.462 5.50 0.00 0.00 2.69
522 523 6.257849 TCACAATCCAGCGAAGTATACATTTC 59.742 38.462 5.50 0.33 0.00 2.17
523 524 6.112734 TCACAATCCAGCGAAGTATACATTT 58.887 36.000 5.50 0.00 0.00 2.32
524 525 5.670485 TCACAATCCAGCGAAGTATACATT 58.330 37.500 5.50 0.00 0.00 2.71
525 526 5.276461 TCACAATCCAGCGAAGTATACAT 57.724 39.130 5.50 0.00 0.00 2.29
526 527 4.682787 CTCACAATCCAGCGAAGTATACA 58.317 43.478 5.50 0.00 0.00 2.29
527 528 3.491267 GCTCACAATCCAGCGAAGTATAC 59.509 47.826 0.00 0.00 0.00 1.47
528 529 3.492656 GGCTCACAATCCAGCGAAGTATA 60.493 47.826 0.00 0.00 36.41 1.47
529 530 2.555199 GCTCACAATCCAGCGAAGTAT 58.445 47.619 0.00 0.00 0.00 2.12
530 531 1.405526 GGCTCACAATCCAGCGAAGTA 60.406 52.381 0.00 0.00 36.41 2.24
531 532 0.674895 GGCTCACAATCCAGCGAAGT 60.675 55.000 0.00 0.00 36.41 3.01
532 533 0.392193 AGGCTCACAATCCAGCGAAG 60.392 55.000 0.00 0.00 36.41 3.79
533 534 0.391661 GAGGCTCACAATCCAGCGAA 60.392 55.000 10.25 0.00 36.41 4.70
534 535 1.219124 GAGGCTCACAATCCAGCGA 59.781 57.895 10.25 0.00 36.41 4.93
535 536 0.674581 TTGAGGCTCACAATCCAGCG 60.675 55.000 18.55 0.00 36.41 5.18
536 537 1.538047 TTTGAGGCTCACAATCCAGC 58.462 50.000 18.55 0.00 34.65 4.85
537 538 4.673580 CGAATTTTGAGGCTCACAATCCAG 60.674 45.833 24.65 16.29 27.67 3.86
538 539 3.191162 CGAATTTTGAGGCTCACAATCCA 59.809 43.478 24.65 4.85 27.67 3.41
539 540 3.440173 TCGAATTTTGAGGCTCACAATCC 59.560 43.478 24.65 14.61 27.67 3.01
540 541 4.685169 TCGAATTTTGAGGCTCACAATC 57.315 40.909 24.65 17.51 27.67 2.67
541 542 4.520492 AGTTCGAATTTTGAGGCTCACAAT 59.480 37.500 20.31 20.31 28.83 2.71
542 543 3.882888 AGTTCGAATTTTGAGGCTCACAA 59.117 39.130 18.55 18.01 0.00 3.33
543 544 3.476552 AGTTCGAATTTTGAGGCTCACA 58.523 40.909 18.55 8.24 0.00 3.58
544 545 3.120165 GGAGTTCGAATTTTGAGGCTCAC 60.120 47.826 18.55 4.19 0.00 3.51
545 546 3.074412 GGAGTTCGAATTTTGAGGCTCA 58.926 45.455 14.43 14.43 0.00 4.26
546 547 3.339141 AGGAGTTCGAATTTTGAGGCTC 58.661 45.455 7.79 7.79 0.00 4.70
547 548 3.425162 AGGAGTTCGAATTTTGAGGCT 57.575 42.857 0.00 0.00 0.00 4.58
548 549 5.181433 AGTTTAGGAGTTCGAATTTTGAGGC 59.819 40.000 0.00 0.00 0.00 4.70
549 550 6.426937 TGAGTTTAGGAGTTCGAATTTTGAGG 59.573 38.462 0.00 0.00 0.00 3.86
550 551 7.421530 TGAGTTTAGGAGTTCGAATTTTGAG 57.578 36.000 0.00 0.00 0.00 3.02
551 552 7.094805 CCATGAGTTTAGGAGTTCGAATTTTGA 60.095 37.037 0.00 0.00 0.00 2.69
552 553 7.023575 CCATGAGTTTAGGAGTTCGAATTTTG 58.976 38.462 0.00 0.00 0.00 2.44
553 554 6.940298 TCCATGAGTTTAGGAGTTCGAATTTT 59.060 34.615 0.00 0.00 0.00 1.82
554 555 6.472887 TCCATGAGTTTAGGAGTTCGAATTT 58.527 36.000 0.00 0.00 0.00 1.82
555 556 6.049955 TCCATGAGTTTAGGAGTTCGAATT 57.950 37.500 0.00 0.00 0.00 2.17
556 557 5.677319 TCCATGAGTTTAGGAGTTCGAAT 57.323 39.130 0.00 0.00 0.00 3.34
557 558 5.677319 ATCCATGAGTTTAGGAGTTCGAA 57.323 39.130 0.00 0.00 34.40 3.71
558 559 6.785337 TTATCCATGAGTTTAGGAGTTCGA 57.215 37.500 0.00 0.00 34.40 3.71
559 560 7.843490 TTTTATCCATGAGTTTAGGAGTTCG 57.157 36.000 0.00 0.00 34.40 3.95
620 621 9.561069 GGGTCATTTAGGGTGCTATTATATATG 57.439 37.037 0.00 0.00 0.00 1.78
621 622 8.724310 GGGGTCATTTAGGGTGCTATTATATAT 58.276 37.037 0.00 0.00 0.00 0.86
622 623 7.685052 TGGGGTCATTTAGGGTGCTATTATATA 59.315 37.037 0.00 0.00 0.00 0.86
623 624 6.507485 TGGGGTCATTTAGGGTGCTATTATAT 59.493 38.462 0.00 0.00 0.00 0.86
624 625 5.852807 TGGGGTCATTTAGGGTGCTATTATA 59.147 40.000 0.00 0.00 0.00 0.98
625 626 4.667858 TGGGGTCATTTAGGGTGCTATTAT 59.332 41.667 0.00 0.00 0.00 1.28
626 627 4.048600 TGGGGTCATTTAGGGTGCTATTA 58.951 43.478 0.00 0.00 0.00 0.98
627 628 2.856231 TGGGGTCATTTAGGGTGCTATT 59.144 45.455 0.00 0.00 0.00 1.73
628 629 2.174854 GTGGGGTCATTTAGGGTGCTAT 59.825 50.000 0.00 0.00 0.00 2.97
629 630 1.562475 GTGGGGTCATTTAGGGTGCTA 59.438 52.381 0.00 0.00 0.00 3.49
630 631 0.331616 GTGGGGTCATTTAGGGTGCT 59.668 55.000 0.00 0.00 0.00 4.40
631 632 0.331616 AGTGGGGTCATTTAGGGTGC 59.668 55.000 0.00 0.00 0.00 5.01
632 633 1.916181 AGAGTGGGGTCATTTAGGGTG 59.084 52.381 0.00 0.00 0.00 4.61
633 634 2.361085 AGAGTGGGGTCATTTAGGGT 57.639 50.000 0.00 0.00 0.00 4.34
634 635 2.420129 CGAAGAGTGGGGTCATTTAGGG 60.420 54.545 0.00 0.00 0.00 3.53
635 636 2.420129 CCGAAGAGTGGGGTCATTTAGG 60.420 54.545 0.00 0.00 0.00 2.69
636 637 2.906354 CCGAAGAGTGGGGTCATTTAG 58.094 52.381 0.00 0.00 0.00 1.85
637 638 1.065709 GCCGAAGAGTGGGGTCATTTA 60.066 52.381 0.00 0.00 0.00 1.40
638 639 0.322546 GCCGAAGAGTGGGGTCATTT 60.323 55.000 0.00 0.00 0.00 2.32
639 640 1.201429 AGCCGAAGAGTGGGGTCATT 61.201 55.000 0.00 0.00 0.00 2.57
640 641 1.201429 AAGCCGAAGAGTGGGGTCAT 61.201 55.000 0.00 0.00 31.24 3.06
641 642 1.841556 AAGCCGAAGAGTGGGGTCA 60.842 57.895 0.00 0.00 31.24 4.02
642 643 1.376037 CAAGCCGAAGAGTGGGGTC 60.376 63.158 0.00 0.00 31.24 4.46
643 644 1.201429 ATCAAGCCGAAGAGTGGGGT 61.201 55.000 0.00 0.00 34.37 4.95
644 645 0.745845 CATCAAGCCGAAGAGTGGGG 60.746 60.000 0.00 0.00 0.00 4.96
645 646 0.036010 ACATCAAGCCGAAGAGTGGG 60.036 55.000 0.00 0.00 0.00 4.61
646 647 1.363744 GACATCAAGCCGAAGAGTGG 58.636 55.000 0.00 0.00 0.00 4.00
647 648 1.066573 AGGACATCAAGCCGAAGAGTG 60.067 52.381 0.00 0.00 0.00 3.51
648 649 1.205893 GAGGACATCAAGCCGAAGAGT 59.794 52.381 0.00 0.00 0.00 3.24
649 650 1.800655 CGAGGACATCAAGCCGAAGAG 60.801 57.143 0.00 0.00 0.00 2.85
650 651 0.173481 CGAGGACATCAAGCCGAAGA 59.827 55.000 0.00 0.00 0.00 2.87
651 652 0.173481 TCGAGGACATCAAGCCGAAG 59.827 55.000 0.00 0.00 0.00 3.79
652 653 0.824109 ATCGAGGACATCAAGCCGAA 59.176 50.000 0.00 0.00 0.00 4.30
653 654 0.385751 GATCGAGGACATCAAGCCGA 59.614 55.000 0.00 0.00 0.00 5.54
654 655 0.103026 TGATCGAGGACATCAAGCCG 59.897 55.000 0.00 0.00 0.00 5.52
655 656 1.936547 GTTGATCGAGGACATCAAGCC 59.063 52.381 0.00 0.00 40.22 4.35
656 657 2.349886 GTGTTGATCGAGGACATCAAGC 59.650 50.000 0.00 0.00 40.22 4.01
657 658 2.932614 GGTGTTGATCGAGGACATCAAG 59.067 50.000 0.00 0.00 40.22 3.02
658 659 2.567169 AGGTGTTGATCGAGGACATCAA 59.433 45.455 10.33 3.50 37.82 2.57
659 660 2.179427 AGGTGTTGATCGAGGACATCA 58.821 47.619 10.33 4.80 0.00 3.07
660 661 2.932614 CAAGGTGTTGATCGAGGACATC 59.067 50.000 0.00 0.00 35.46 3.06
661 662 2.936993 GCAAGGTGTTGATCGAGGACAT 60.937 50.000 0.00 0.00 35.46 3.06
662 663 1.608025 GCAAGGTGTTGATCGAGGACA 60.608 52.381 0.00 0.00 35.46 4.02
663 664 1.079503 GCAAGGTGTTGATCGAGGAC 58.920 55.000 0.00 0.00 35.46 3.85
664 665 0.684535 TGCAAGGTGTTGATCGAGGA 59.315 50.000 0.00 0.00 35.46 3.71
665 666 1.522668 TTGCAAGGTGTTGATCGAGG 58.477 50.000 0.00 0.00 35.46 4.63
666 667 3.005554 AGATTGCAAGGTGTTGATCGAG 58.994 45.455 4.94 0.00 35.46 4.04
667 668 2.743664 CAGATTGCAAGGTGTTGATCGA 59.256 45.455 4.94 0.00 35.46 3.59
668 669 2.743664 TCAGATTGCAAGGTGTTGATCG 59.256 45.455 4.94 0.00 35.46 3.69
669 670 4.669318 CATCAGATTGCAAGGTGTTGATC 58.331 43.478 4.94 0.00 35.46 2.92
670 671 3.119245 GCATCAGATTGCAAGGTGTTGAT 60.119 43.478 19.06 13.53 42.31 2.57
671 672 2.229543 GCATCAGATTGCAAGGTGTTGA 59.770 45.455 19.06 12.25 42.31 3.18
672 673 2.602878 GCATCAGATTGCAAGGTGTTG 58.397 47.619 4.94 10.74 42.31 3.33
673 674 1.547372 GGCATCAGATTGCAAGGTGTT 59.453 47.619 4.94 0.00 44.59 3.32
674 675 1.180029 GGCATCAGATTGCAAGGTGT 58.820 50.000 4.94 0.00 44.59 4.16
675 676 0.458669 GGGCATCAGATTGCAAGGTG 59.541 55.000 4.94 4.82 44.59 4.00
676 677 0.685458 GGGGCATCAGATTGCAAGGT 60.685 55.000 4.94 0.00 44.59 3.50
677 678 0.685131 TGGGGCATCAGATTGCAAGG 60.685 55.000 4.94 0.00 44.59 3.61
678 679 1.068588 CATGGGGCATCAGATTGCAAG 59.931 52.381 4.94 0.00 44.59 4.01
679 680 1.116308 CATGGGGCATCAGATTGCAA 58.884 50.000 0.00 0.00 44.59 4.08
680 681 0.259356 TCATGGGGCATCAGATTGCA 59.741 50.000 0.00 0.00 44.59 4.08
681 682 1.405872 TTCATGGGGCATCAGATTGC 58.594 50.000 0.00 0.00 42.01 3.56
682 683 2.299013 CCATTCATGGGGCATCAGATTG 59.701 50.000 0.00 0.00 44.31 2.67
683 684 2.605257 CCATTCATGGGGCATCAGATT 58.395 47.619 0.00 0.00 44.31 2.40
684 685 2.304221 CCATTCATGGGGCATCAGAT 57.696 50.000 0.00 0.00 44.31 2.90
685 686 3.833729 CCATTCATGGGGCATCAGA 57.166 52.632 0.00 0.00 44.31 3.27
695 696 8.681486 TTATCTGAACCTACATTCCATTCATG 57.319 34.615 0.00 0.00 0.00 3.07
696 697 8.717717 TCTTATCTGAACCTACATTCCATTCAT 58.282 33.333 0.00 0.00 0.00 2.57
697 698 8.089625 TCTTATCTGAACCTACATTCCATTCA 57.910 34.615 0.00 0.00 0.00 2.57
698 699 7.659390 CCTCTTATCTGAACCTACATTCCATTC 59.341 40.741 0.00 0.00 0.00 2.67
699 700 7.420680 CCCTCTTATCTGAACCTACATTCCATT 60.421 40.741 0.00 0.00 0.00 3.16
700 701 6.043706 CCCTCTTATCTGAACCTACATTCCAT 59.956 42.308 0.00 0.00 0.00 3.41
701 702 5.366768 CCCTCTTATCTGAACCTACATTCCA 59.633 44.000 0.00 0.00 0.00 3.53
702 703 5.367060 ACCCTCTTATCTGAACCTACATTCC 59.633 44.000 0.00 0.00 0.00 3.01
703 704 6.284459 CACCCTCTTATCTGAACCTACATTC 58.716 44.000 0.00 0.00 0.00 2.67
704 705 5.131142 CCACCCTCTTATCTGAACCTACATT 59.869 44.000 0.00 0.00 0.00 2.71
705 706 4.656112 CCACCCTCTTATCTGAACCTACAT 59.344 45.833 0.00 0.00 0.00 2.29
706 707 4.030913 CCACCCTCTTATCTGAACCTACA 58.969 47.826 0.00 0.00 0.00 2.74
707 708 4.287552 TCCACCCTCTTATCTGAACCTAC 58.712 47.826 0.00 0.00 0.00 3.18
708 709 4.547671 CTCCACCCTCTTATCTGAACCTA 58.452 47.826 0.00 0.00 0.00 3.08
709 710 3.379452 CTCCACCCTCTTATCTGAACCT 58.621 50.000 0.00 0.00 0.00 3.50
710 711 2.436173 CCTCCACCCTCTTATCTGAACC 59.564 54.545 0.00 0.00 0.00 3.62
711 712 2.436173 CCCTCCACCCTCTTATCTGAAC 59.564 54.545 0.00 0.00 0.00 3.18
712 713 2.629639 CCCCTCCACCCTCTTATCTGAA 60.630 54.545 0.00 0.00 0.00 3.02
713 714 1.062121 CCCCTCCACCCTCTTATCTGA 60.062 57.143 0.00 0.00 0.00 3.27
714 715 1.428869 CCCCTCCACCCTCTTATCTG 58.571 60.000 0.00 0.00 0.00 2.90
715 716 0.400670 GCCCCTCCACCCTCTTATCT 60.401 60.000 0.00 0.00 0.00 1.98
716 717 1.759459 CGCCCCTCCACCCTCTTATC 61.759 65.000 0.00 0.00 0.00 1.75
717 718 1.766461 CGCCCCTCCACCCTCTTAT 60.766 63.158 0.00 0.00 0.00 1.73
718 719 2.365105 CGCCCCTCCACCCTCTTA 60.365 66.667 0.00 0.00 0.00 2.10
719 720 4.332543 TCGCCCCTCCACCCTCTT 62.333 66.667 0.00 0.00 0.00 2.85
720 721 4.787280 CTCGCCCCTCCACCCTCT 62.787 72.222 0.00 0.00 0.00 3.69
737 738 1.963338 GGTGTGCTCTGTGTCAGCC 60.963 63.158 0.00 0.00 35.89 4.85
742 743 2.088674 GAGACCGGTGTGCTCTGTGT 62.089 60.000 14.63 0.00 0.00 3.72
776 777 4.778415 CCGACGACTGACTGCCCG 62.778 72.222 0.00 0.00 0.00 6.13
803 804 1.632409 ACATGAGAGCCAATCCAGTGT 59.368 47.619 0.00 0.00 0.00 3.55
818 819 1.957668 ATATGCAAGAGCGCACATGA 58.042 45.000 14.18 0.03 46.56 3.07
828 829 7.500141 TCTGCTCTACATTTGTATATGCAAGA 58.500 34.615 6.34 0.00 33.28 3.02
836 837 4.446371 GGTGCTCTGCTCTACATTTGTAT 58.554 43.478 0.00 0.00 0.00 2.29
837 838 3.369471 GGGTGCTCTGCTCTACATTTGTA 60.369 47.826 0.00 0.00 0.00 2.41
839 840 2.012673 GGGTGCTCTGCTCTACATTTG 58.987 52.381 0.00 0.00 0.00 2.32
850 877 1.642037 CGCAATCAGTGGGTGCTCTG 61.642 60.000 14.46 0.00 36.10 3.35
851 878 1.376424 CGCAATCAGTGGGTGCTCT 60.376 57.895 14.46 0.00 36.10 4.09
852 879 3.181367 CGCAATCAGTGGGTGCTC 58.819 61.111 14.46 0.00 36.10 4.26
857 884 1.879380 TGAGAAAACGCAATCAGTGGG 59.121 47.619 0.00 0.00 45.54 4.61
858 885 3.624326 TTGAGAAAACGCAATCAGTGG 57.376 42.857 0.00 0.00 0.00 4.00
879 906 0.627986 CCATCCTGGCCTCTTTTCCT 59.372 55.000 3.32 0.00 0.00 3.36
890 917 1.379044 GGTCAACTGGCCATCCTGG 60.379 63.158 5.51 0.00 40.23 4.45
891 918 0.679002 CAGGTCAACTGGCCATCCTG 60.679 60.000 5.51 15.19 43.78 3.86
892 919 1.687612 CAGGTCAACTGGCCATCCT 59.312 57.895 5.51 6.82 43.78 3.24
893 920 4.326255 CAGGTCAACTGGCCATCC 57.674 61.111 5.51 4.37 43.78 3.51
949 990 1.617018 GCCTTGGCCCTTCCCAATTC 61.617 60.000 0.00 0.00 43.51 2.17
950 991 1.613332 GCCTTGGCCCTTCCCAATT 60.613 57.895 0.00 0.00 43.51 2.32
952 993 3.516512 TGCCTTGGCCCTTCCCAA 61.517 61.111 9.35 0.00 42.37 4.12
953 994 3.983420 CTGCCTTGGCCCTTCCCA 61.983 66.667 9.35 0.00 0.00 4.37
955 996 3.893961 AAGCTGCCTTGGCCCTTCC 62.894 63.158 9.35 0.00 0.00 3.46
959 1000 3.376918 GTCAAGCTGCCTTGGCCC 61.377 66.667 9.35 0.37 45.67 5.80
1019 1064 2.203480 GGAAAGCACAGGTGGCCA 60.203 61.111 0.00 0.00 0.00 5.36
1020 1065 1.973812 GAGGAAAGCACAGGTGGCC 60.974 63.158 0.00 0.00 0.00 5.36
1342 1390 4.083862 GCCGGCGAGGAAGAAGGT 62.084 66.667 12.58 0.00 45.00 3.50
1371 1419 0.659427 CGTAGGAATCGTACGGCAGA 59.341 55.000 22.92 0.00 42.14 4.26
1429 1480 3.998672 GTTGTCCCCTGTCGCCGA 61.999 66.667 0.00 0.00 0.00 5.54
1636 1687 2.202878 GCCGAGCCATAGCGTCAA 60.203 61.111 0.00 0.00 46.67 3.18
1939 2014 2.698797 TCTTCTTGTTCCCACGAAGACT 59.301 45.455 7.34 0.00 45.64 3.24
1943 2018 3.830744 TCTTCTTCTTGTTCCCACGAA 57.169 42.857 0.00 0.00 0.00 3.85
1961 2036 1.181786 CTCCTCAACCTCTCGCTTCT 58.818 55.000 0.00 0.00 0.00 2.85
1962 2037 0.174617 CCTCCTCAACCTCTCGCTTC 59.825 60.000 0.00 0.00 0.00 3.86
1963 2038 0.251832 TCCTCCTCAACCTCTCGCTT 60.252 55.000 0.00 0.00 0.00 4.68
1983 2061 2.060980 GTCCTCCGAGCCCATGTCT 61.061 63.158 0.00 0.00 0.00 3.41
2332 2419 2.360350 AATGTCCAGGCTGCGGTG 60.360 61.111 9.56 0.00 0.00 4.94
2349 2436 2.989639 CCCTTGCCGTGGAGATGA 59.010 61.111 0.00 0.00 0.00 2.92
2469 2594 3.070476 TCCTGTTGTATCATGCAGCAA 57.930 42.857 0.00 0.00 0.00 3.91
2476 2601 9.988815 GTTACTATCTTCATCCTGTTGTATCAT 57.011 33.333 0.00 0.00 0.00 2.45
2477 2602 9.201989 AGTTACTATCTTCATCCTGTTGTATCA 57.798 33.333 0.00 0.00 0.00 2.15
2478 2603 9.469807 CAGTTACTATCTTCATCCTGTTGTATC 57.530 37.037 0.00 0.00 0.00 2.24
2683 2811 2.901051 GATCCACGTAGCCCGGTGTG 62.901 65.000 0.00 0.75 42.24 3.82
2759 2887 1.965754 GCGACCTCCAGCAGAAGGAT 61.966 60.000 5.40 0.00 33.99 3.24
3145 3291 4.735132 TGTGTGCCGTAGCCGCTC 62.735 66.667 0.00 0.00 38.69 5.03
3250 3396 9.088512 GAATCATCGACTGTAAAGAACTACAAT 57.911 33.333 0.00 0.00 31.51 2.71
3326 3491 3.425758 GGGTTGCGATAAAGAAAAGGTCG 60.426 47.826 0.00 0.00 35.56 4.79
3340 3505 0.804544 CTAAGCGAATCGGGTTGCGA 60.805 55.000 4.35 0.00 0.00 5.10
3343 3508 2.280708 CGTAACTAAGCGAATCGGGTTG 59.719 50.000 4.35 0.00 0.00 3.77
3366 3531 1.468520 CAGAAAACCTATGGGCACGTG 59.531 52.381 12.28 12.28 35.63 4.49
3379 3544 6.077838 CACGAACTATAAAGTGGCAGAAAAC 58.922 40.000 0.00 0.00 35.62 2.43
3429 3594 0.966875 TAACTAGACGGCTTGGCGGA 60.967 55.000 19.91 4.98 33.14 5.54
3551 7146 5.596268 AAATGAAAGAGAAATTTTGCGGC 57.404 34.783 0.00 0.00 0.00 6.53
3569 7164 9.089601 TCAGAAATGCATAGCAATTTGTAAATG 57.910 29.630 0.00 1.72 43.62 2.32
3681 7292 4.235360 CCGTAATATCTGATGGACGTTCC 58.765 47.826 15.08 0.00 36.96 3.62
3688 7299 6.467677 AGGAAATGACCGTAATATCTGATGG 58.532 40.000 0.00 0.00 34.73 3.51
3728 7343 4.708421 TGGTCGCCCAGTAGGATAATATAC 59.292 45.833 0.00 0.00 38.24 1.47
3737 7352 0.035439 AATTGTGGTCGCCCAGTAGG 60.035 55.000 0.00 0.00 42.94 3.18
3797 7412 2.038689 TCGGCAACACCACTAACCATTA 59.961 45.455 0.00 0.00 39.03 1.90
3816 7431 7.096023 GCATAACTTCCAGACAATAGTACATCG 60.096 40.741 0.00 0.00 0.00 3.84
3862 7758 8.024146 ACAAAACTTGTGTTGTTCCAAAATAC 57.976 30.769 3.67 0.00 43.48 1.89
3913 7812 3.352648 ACAATGGATTAAGGACGTTGGG 58.647 45.455 11.23 0.00 35.88 4.12
3920 7819 9.983024 TTATTTCAAGGTACAATGGATTAAGGA 57.017 29.630 0.00 0.00 0.00 3.36
4056 7959 7.962918 GTCGACTAAGCAACAATAAATGAACAT 59.037 33.333 8.70 0.00 0.00 2.71
4066 7969 5.460646 CCAAAATGTCGACTAAGCAACAAT 58.539 37.500 17.92 0.00 0.00 2.71
4080 7983 6.524586 CGAGAAAATCTAACAGCCAAAATGTC 59.475 38.462 0.00 0.00 0.00 3.06
4105 8008 5.873164 ACCACTCCAAGACGAACAAATATAC 59.127 40.000 0.00 0.00 0.00 1.47
4119 8022 1.069022 CGCAACATCAACCACTCCAAG 60.069 52.381 0.00 0.00 0.00 3.61
4120 8023 0.950836 CGCAACATCAACCACTCCAA 59.049 50.000 0.00 0.00 0.00 3.53
4126 8029 0.795698 CACGATCGCAACATCAACCA 59.204 50.000 16.60 0.00 0.00 3.67
4184 8088 8.122472 ACTTACCCAAATTTAAGGAATGTCTG 57.878 34.615 12.26 0.72 30.73 3.51
4186 8090 8.581578 TCAACTTACCCAAATTTAAGGAATGTC 58.418 33.333 12.26 0.00 30.73 3.06
4213 8117 7.038154 TGAGAAAGAATCAACGGTCAAAAAT 57.962 32.000 0.00 0.00 0.00 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.