Multiple sequence alignment - TraesCS4D01G102500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G102500 chr4D 100.000 3629 0 0 1 3629 81391693 81395321 0.000000e+00 6702.0
1 TraesCS4D01G102500 chr4D 86.486 592 49 17 180 760 430799030 430799601 3.980000e-174 621.0
2 TraesCS4D01G102500 chr4D 81.365 381 61 9 3253 3628 446121650 446122025 5.890000e-78 302.0
3 TraesCS4D01G102500 chr4D 80.593 371 53 11 180 547 410410278 410410632 5.970000e-68 268.0
4 TraesCS4D01G102500 chr4D 79.878 328 49 12 1261 1575 81392866 81393189 1.310000e-54 224.0
5 TraesCS4D01G102500 chr4D 79.878 328 49 12 1174 1497 81392953 81393267 1.310000e-54 224.0
6 TraesCS4D01G102500 chr4A 94.631 2384 89 18 787 3159 490918978 490921333 0.000000e+00 3657.0
7 TraesCS4D01G102500 chr4A 93.176 381 22 3 3250 3629 490921334 490921711 1.140000e-154 556.0
8 TraesCS4D01G102500 chr4A 79.091 330 48 8 1261 1575 490919362 490919685 1.320000e-49 207.0
9 TraesCS4D01G102500 chr4A 77.950 322 56 9 1174 1492 490919449 490919758 1.720000e-43 187.0
10 TraesCS4D01G102500 chr4B 88.963 1640 117 24 1261 2849 114951071 114952697 0.000000e+00 1967.0
11 TraesCS4D01G102500 chr4B 90.612 735 39 11 787 1497 114950678 114951406 0.000000e+00 948.0
12 TraesCS4D01G102500 chr4B 89.014 355 32 7 2841 3193 115060685 115061034 2.000000e-117 433.0
13 TraesCS4D01G102500 chr3B 86.393 610 63 11 186 786 579748556 579747958 0.000000e+00 649.0
14 TraesCS4D01G102500 chr3B 80.683 761 126 15 1878 2623 27053993 27054747 4.070000e-159 571.0
15 TraesCS4D01G102500 chr3B 79.592 784 125 24 1878 2636 27202374 27201601 2.480000e-146 529.0
16 TraesCS4D01G102500 chr3B 78.618 767 136 15 1882 2631 14251301 14252056 1.960000e-132 483.0
17 TraesCS4D01G102500 chr3B 78.541 713 107 34 1955 2635 50039034 50038336 9.310000e-116 427.0
18 TraesCS4D01G102500 chr3B 78.636 660 97 32 2011 2642 49863317 49863960 7.300000e-107 398.0
19 TraesCS4D01G102500 chr3B 77.213 689 131 14 1955 2631 27103774 27104448 2.640000e-101 379.0
20 TraesCS4D01G102500 chr3B 83.777 376 56 5 3253 3627 174492443 174492072 5.770000e-93 351.0
21 TraesCS4D01G102500 chr7D 80.161 746 109 25 1878 2605 64667649 64668373 4.150000e-144 521.0
22 TraesCS4D01G102500 chr3A 78.638 646 106 25 1960 2580 38658159 38657521 2.030000e-107 399.0
23 TraesCS4D01G102500 chr3A 78.947 304 50 12 185 482 646004892 646004597 1.030000e-45 195.0
24 TraesCS4D01G102500 chr2B 80.855 491 62 15 185 673 681216510 681216050 1.240000e-94 357.0
25 TraesCS4D01G102500 chr2B 82.275 378 61 6 3253 3629 477155406 477155034 4.520000e-84 322.0
26 TraesCS4D01G102500 chr2B 81.794 379 61 7 3253 3629 178862606 178862234 9.780000e-81 311.0
27 TraesCS4D01G102500 chr2B 80.952 378 64 7 3254 3629 32134175 32133804 3.540000e-75 292.0
28 TraesCS4D01G102500 chr2B 89.189 185 15 4 5 186 3269578 3269396 3.650000e-55 226.0
29 TraesCS4D01G102500 chr7A 82.804 378 50 7 3253 3629 115792473 115792836 1.260000e-84 324.0
30 TraesCS4D01G102500 chr1B 81.266 379 64 7 3253 3629 265696721 265697094 2.120000e-77 300.0
31 TraesCS4D01G102500 chr6B 81.918 365 54 11 3253 3612 186697697 186698054 7.620000e-77 298.0
32 TraesCS4D01G102500 chr2D 89.381 226 17 2 540 758 100753201 100753426 9.920000e-71 278.0
33 TraesCS4D01G102500 chr2D 89.071 183 17 3 7 186 568721972 568721790 1.310000e-54 224.0
34 TraesCS4D01G102500 chr5A 81.000 300 50 7 185 482 600257600 600257894 7.840000e-57 231.0
35 TraesCS4D01G102500 chr3D 88.830 188 17 3 1 186 346923885 346923700 1.010000e-55 228.0
36 TraesCS4D01G102500 chr3D 76.721 305 55 13 185 483 73850634 73850928 4.850000e-34 156.0
37 TraesCS4D01G102500 chr3D 76.645 304 57 11 185 483 76233887 76233593 4.850000e-34 156.0
38 TraesCS4D01G102500 chr6A 76.796 362 72 4 185 546 143092788 143092439 3.700000e-45 193.0
39 TraesCS4D01G102500 chr5D 90.110 91 8 1 700 790 450407156 450407245 2.290000e-22 117.0
40 TraesCS4D01G102500 chr1D 73.200 250 60 7 198 445 333218518 333218274 2.320000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G102500 chr4D 81391693 81395321 3628 False 2383.333333 6702 86.585333 1 3629 3 chr4D.!!$F4 3628
1 TraesCS4D01G102500 chr4D 430799030 430799601 571 False 621.000000 621 86.486000 180 760 1 chr4D.!!$F2 580
2 TraesCS4D01G102500 chr4A 490918978 490921711 2733 False 1151.750000 3657 86.212000 787 3629 4 chr4A.!!$F1 2842
3 TraesCS4D01G102500 chr4B 114950678 114952697 2019 False 1457.500000 1967 89.787500 787 2849 2 chr4B.!!$F2 2062
4 TraesCS4D01G102500 chr3B 579747958 579748556 598 True 649.000000 649 86.393000 186 786 1 chr3B.!!$R4 600
5 TraesCS4D01G102500 chr3B 27053993 27054747 754 False 571.000000 571 80.683000 1878 2623 1 chr3B.!!$F2 745
6 TraesCS4D01G102500 chr3B 27201601 27202374 773 True 529.000000 529 79.592000 1878 2636 1 chr3B.!!$R1 758
7 TraesCS4D01G102500 chr3B 14251301 14252056 755 False 483.000000 483 78.618000 1882 2631 1 chr3B.!!$F1 749
8 TraesCS4D01G102500 chr3B 50038336 50039034 698 True 427.000000 427 78.541000 1955 2635 1 chr3B.!!$R2 680
9 TraesCS4D01G102500 chr3B 49863317 49863960 643 False 398.000000 398 78.636000 2011 2642 1 chr3B.!!$F4 631
10 TraesCS4D01G102500 chr3B 27103774 27104448 674 False 379.000000 379 77.213000 1955 2631 1 chr3B.!!$F3 676
11 TraesCS4D01G102500 chr7D 64667649 64668373 724 False 521.000000 521 80.161000 1878 2605 1 chr7D.!!$F1 727
12 TraesCS4D01G102500 chr3A 38657521 38658159 638 True 399.000000 399 78.638000 1960 2580 1 chr3A.!!$R1 620

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
514 521 0.041535 TTTTCCCATGGCAGGAGCAT 59.958 50.0 6.09 0.0 44.61 3.79 F
714 728 0.464452 ATTCATCCCGTCCTTCCGAC 59.536 55.0 0.00 0.0 38.21 4.79 F
773 787 0.614979 ACCTGACTGGCCGTATCACT 60.615 55.0 0.00 0.0 40.22 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1602 1657 2.173669 CATCGCCGTAGCAACTGGG 61.174 63.158 0.00 0.0 39.83 4.45 R
1605 1660 2.511600 GGCATCGCCGTAGCAACT 60.512 61.111 5.97 0.0 39.62 3.16 R
2719 2861 0.529992 GCTATAGCACACACGGACCC 60.530 60.000 20.01 0.0 41.59 4.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 9.023962 ACAAGAGAATTAGTATGAAAATTGGCA 57.976 29.630 0.00 0.00 0.00 4.92
56 57 9.512435 CAAGAGAATTAGTATGAAAATTGGCAG 57.488 33.333 0.00 0.00 0.00 4.85
57 58 7.710896 AGAGAATTAGTATGAAAATTGGCAGC 58.289 34.615 0.00 0.00 0.00 5.25
58 59 6.809869 AGAATTAGTATGAAAATTGGCAGCC 58.190 36.000 3.66 3.66 0.00 4.85
59 60 6.608808 AGAATTAGTATGAAAATTGGCAGCCT 59.391 34.615 14.15 0.00 0.00 4.58
60 61 6.796785 ATTAGTATGAAAATTGGCAGCCTT 57.203 33.333 14.15 0.00 0.00 4.35
61 62 7.896383 ATTAGTATGAAAATTGGCAGCCTTA 57.104 32.000 14.15 0.45 0.00 2.69
62 63 7.710676 TTAGTATGAAAATTGGCAGCCTTAA 57.289 32.000 14.15 0.00 0.00 1.85
63 64 5.965922 AGTATGAAAATTGGCAGCCTTAAC 58.034 37.500 14.15 0.16 0.00 2.01
64 65 4.888326 ATGAAAATTGGCAGCCTTAACA 57.112 36.364 14.15 6.07 0.00 2.41
65 66 4.888326 TGAAAATTGGCAGCCTTAACAT 57.112 36.364 14.15 0.00 0.00 2.71
66 67 5.991933 TGAAAATTGGCAGCCTTAACATA 57.008 34.783 14.15 0.00 0.00 2.29
67 68 5.719173 TGAAAATTGGCAGCCTTAACATAC 58.281 37.500 14.15 0.00 0.00 2.39
68 69 4.736126 AAATTGGCAGCCTTAACATACC 57.264 40.909 14.15 0.00 0.00 2.73
69 70 2.889170 TTGGCAGCCTTAACATACCA 57.111 45.000 14.15 0.00 0.00 3.25
70 71 2.889170 TGGCAGCCTTAACATACCAA 57.111 45.000 14.15 0.00 0.00 3.67
71 72 3.162147 TGGCAGCCTTAACATACCAAA 57.838 42.857 14.15 0.00 0.00 3.28
72 73 2.823154 TGGCAGCCTTAACATACCAAAC 59.177 45.455 14.15 0.00 0.00 2.93
73 74 3.089284 GGCAGCCTTAACATACCAAACT 58.911 45.455 3.29 0.00 0.00 2.66
74 75 4.263550 TGGCAGCCTTAACATACCAAACTA 60.264 41.667 14.15 0.00 0.00 2.24
75 76 4.335594 GGCAGCCTTAACATACCAAACTAG 59.664 45.833 3.29 0.00 0.00 2.57
76 77 4.941873 GCAGCCTTAACATACCAAACTAGT 59.058 41.667 0.00 0.00 0.00 2.57
77 78 5.064834 GCAGCCTTAACATACCAAACTAGTC 59.935 44.000 0.00 0.00 0.00 2.59
78 79 6.407202 CAGCCTTAACATACCAAACTAGTCT 58.593 40.000 0.00 0.00 0.00 3.24
79 80 6.313905 CAGCCTTAACATACCAAACTAGTCTG 59.686 42.308 0.00 0.00 0.00 3.51
80 81 6.013639 AGCCTTAACATACCAAACTAGTCTGT 60.014 38.462 0.00 0.00 0.00 3.41
81 82 6.653740 GCCTTAACATACCAAACTAGTCTGTT 59.346 38.462 0.00 3.00 37.95 3.16
82 83 7.820872 GCCTTAACATACCAAACTAGTCTGTTA 59.179 37.037 0.00 2.10 36.38 2.41
83 84 9.886132 CCTTAACATACCAAACTAGTCTGTTAT 57.114 33.333 0.00 0.00 36.95 1.89
87 88 9.569122 AACATACCAAACTAGTCTGTTATTGTT 57.431 29.630 0.00 0.00 34.08 2.83
88 89 9.216117 ACATACCAAACTAGTCTGTTATTGTTC 57.784 33.333 0.00 0.00 0.00 3.18
89 90 9.214957 CATACCAAACTAGTCTGTTATTGTTCA 57.785 33.333 0.00 0.00 0.00 3.18
90 91 9.959721 ATACCAAACTAGTCTGTTATTGTTCAT 57.040 29.630 0.00 0.00 0.00 2.57
91 92 8.099364 ACCAAACTAGTCTGTTATTGTTCATG 57.901 34.615 0.00 0.00 0.00 3.07
92 93 7.174946 ACCAAACTAGTCTGTTATTGTTCATGG 59.825 37.037 0.00 0.00 0.00 3.66
93 94 7.390440 CCAAACTAGTCTGTTATTGTTCATGGA 59.610 37.037 0.00 0.00 0.00 3.41
94 95 7.907214 AACTAGTCTGTTATTGTTCATGGAC 57.093 36.000 0.00 0.00 0.00 4.02
95 96 7.004555 ACTAGTCTGTTATTGTTCATGGACA 57.995 36.000 1.52 1.52 0.00 4.02
96 97 7.099764 ACTAGTCTGTTATTGTTCATGGACAG 58.900 38.462 6.97 0.00 34.21 3.51
97 98 6.114187 AGTCTGTTATTGTTCATGGACAGA 57.886 37.500 6.97 0.00 37.19 3.41
98 99 6.170675 GTCTGTTATTGTTCATGGACAGAC 57.829 41.667 15.80 15.80 44.48 3.51
99 100 5.934625 GTCTGTTATTGTTCATGGACAGACT 59.065 40.000 20.89 0.00 45.63 3.24
100 101 6.428159 GTCTGTTATTGTTCATGGACAGACTT 59.572 38.462 20.89 0.00 45.63 3.01
101 102 6.998074 TCTGTTATTGTTCATGGACAGACTTT 59.002 34.615 6.97 0.00 35.81 2.66
102 103 7.502226 TCTGTTATTGTTCATGGACAGACTTTT 59.498 33.333 6.97 0.00 35.81 2.27
103 104 8.006298 TGTTATTGTTCATGGACAGACTTTTT 57.994 30.769 6.97 0.00 0.00 1.94
167 168 9.705290 AGTACTATTTTAAATTTTTGTGGCTGG 57.295 29.630 0.00 0.00 0.00 4.85
168 169 9.483916 GTACTATTTTAAATTTTTGTGGCTGGT 57.516 29.630 0.00 0.00 0.00 4.00
169 170 8.601845 ACTATTTTAAATTTTTGTGGCTGGTC 57.398 30.769 0.00 0.00 0.00 4.02
170 171 8.428852 ACTATTTTAAATTTTTGTGGCTGGTCT 58.571 29.630 0.00 0.00 0.00 3.85
171 172 9.271828 CTATTTTAAATTTTTGTGGCTGGTCTT 57.728 29.630 0.00 0.00 0.00 3.01
172 173 7.546778 TTTTAAATTTTTGTGGCTGGTCTTC 57.453 32.000 0.00 0.00 0.00 2.87
173 174 4.751767 AAATTTTTGTGGCTGGTCTTCA 57.248 36.364 0.00 0.00 0.00 3.02
174 175 3.733443 ATTTTTGTGGCTGGTCTTCAC 57.267 42.857 0.00 0.00 0.00 3.18
175 176 2.136298 TTTTGTGGCTGGTCTTCACA 57.864 45.000 0.00 0.00 39.31 3.58
176 177 2.136298 TTTGTGGCTGGTCTTCACAA 57.864 45.000 4.30 4.30 45.82 3.33
177 178 2.136298 TTGTGGCTGGTCTTCACAAA 57.864 45.000 5.76 0.00 44.94 2.83
178 179 2.363306 TGTGGCTGGTCTTCACAAAT 57.637 45.000 0.00 0.00 38.30 2.32
179 180 2.665165 TGTGGCTGGTCTTCACAAATT 58.335 42.857 0.00 0.00 38.30 1.82
180 181 2.622942 TGTGGCTGGTCTTCACAAATTC 59.377 45.455 0.00 0.00 38.30 2.17
181 182 2.029918 GTGGCTGGTCTTCACAAATTCC 60.030 50.000 0.00 0.00 0.00 3.01
182 183 2.238521 GGCTGGTCTTCACAAATTCCA 58.761 47.619 0.00 0.00 0.00 3.53
183 184 2.827921 GGCTGGTCTTCACAAATTCCAT 59.172 45.455 0.00 0.00 0.00 3.41
184 185 3.367703 GGCTGGTCTTCACAAATTCCATG 60.368 47.826 0.00 0.00 0.00 3.66
280 281 4.056050 ACATTCTACGTTCTCGCAAAGTT 58.944 39.130 0.00 0.00 41.18 2.66
298 299 1.509934 GTTGTTTCGCGAAAAACCGAC 59.490 47.619 33.69 25.35 38.16 4.79
299 300 0.725686 TGTTTCGCGAAAAACCGACA 59.274 45.000 33.69 24.10 38.16 4.35
300 301 1.129998 TGTTTCGCGAAAAACCGACAA 59.870 42.857 33.69 7.97 38.16 3.18
329 331 3.181505 TGTCGCGTGTGAAAAAGACAAAT 60.182 39.130 5.77 0.00 35.94 2.32
359 362 7.659799 AGTGTTTTAAAAAGGCTTTTCACAAGT 59.340 29.630 28.32 16.45 36.20 3.16
364 367 5.859205 AAAAGGCTTTTCACAAGTCATCT 57.141 34.783 19.14 0.00 0.00 2.90
369 372 7.346751 AGGCTTTTCACAAGTCATCTTTTTA 57.653 32.000 0.00 0.00 0.00 1.52
422 425 0.313672 TTCCGTGAAACTTGGCATGC 59.686 50.000 9.90 9.90 31.75 4.06
423 426 1.080569 CCGTGAAACTTGGCATGCC 60.081 57.895 30.54 30.54 31.75 4.40
427 430 1.080569 GAAACTTGGCATGCCCACG 60.081 57.895 33.44 22.43 45.34 4.94
436 439 2.635427 TGGCATGCCCACGTAGAATATA 59.365 45.455 33.44 7.40 39.18 0.86
445 448 6.890268 TGCCCACGTAGAATATAGAGATGTAT 59.110 38.462 0.00 0.00 0.00 2.29
462 465 9.093458 AGAGATGTATGGGTCAAATTTTTCTTT 57.907 29.630 0.00 0.00 0.00 2.52
467 470 8.267894 TGTATGGGTCAAATTTTTCTTTGGAAA 58.732 29.630 0.00 0.00 39.38 3.13
483 490 8.628630 TCTTTGGAAATTTTTGTCACCTTTTT 57.371 26.923 0.00 0.00 0.00 1.94
511 518 1.928868 ACTTTTTCCCATGGCAGGAG 58.071 50.000 6.09 2.59 34.08 3.69
513 520 0.178938 TTTTTCCCATGGCAGGAGCA 60.179 50.000 6.09 0.00 44.61 4.26
514 521 0.041535 TTTTCCCATGGCAGGAGCAT 59.958 50.000 6.09 0.00 44.61 3.79
515 522 0.925558 TTTCCCATGGCAGGAGCATA 59.074 50.000 6.09 0.00 44.61 3.14
516 523 1.151760 TTCCCATGGCAGGAGCATAT 58.848 50.000 6.09 0.00 44.61 1.78
543 550 0.819582 CCCATGTGCCAAAGTGGATC 59.180 55.000 0.00 0.00 40.96 3.36
547 554 1.067295 TGTGCCAAAGTGGATCTCCT 58.933 50.000 0.00 0.00 40.96 3.69
555 562 4.440880 CAAAGTGGATCTCCTCATCTCAC 58.559 47.826 0.00 0.00 36.82 3.51
640 654 5.020132 AGCCTCACACTCAGTTAAGAGTAT 58.980 41.667 0.00 0.00 46.65 2.12
653 667 9.483489 TCAGTTAAGAGTATATCAAGGGTGTTA 57.517 33.333 0.00 0.00 0.00 2.41
708 722 2.373169 ACATGCATATTCATCCCGTCCT 59.627 45.455 0.00 0.00 0.00 3.85
714 728 0.464452 ATTCATCCCGTCCTTCCGAC 59.536 55.000 0.00 0.00 38.21 4.79
739 753 8.489990 CCATGATCTAATGGTTCATGATAGAC 57.510 38.462 16.10 0.00 46.81 2.59
773 787 0.614979 ACCTGACTGGCCGTATCACT 60.615 55.000 0.00 0.00 40.22 3.41
774 788 1.341679 ACCTGACTGGCCGTATCACTA 60.342 52.381 0.00 0.00 40.22 2.74
775 789 1.338337 CCTGACTGGCCGTATCACTAG 59.662 57.143 0.00 0.00 0.00 2.57
776 790 2.298610 CTGACTGGCCGTATCACTAGA 58.701 52.381 0.00 0.00 0.00 2.43
777 791 2.887783 CTGACTGGCCGTATCACTAGAT 59.112 50.000 0.00 0.00 38.29 1.98
778 792 4.072839 CTGACTGGCCGTATCACTAGATA 58.927 47.826 0.00 0.00 35.67 1.98
822 836 2.298729 ACTGCTCAGAGTGAAGAAGGAC 59.701 50.000 3.60 0.00 0.00 3.85
892 906 4.365514 TCCTCTTGCCAAATGTAAGTCA 57.634 40.909 0.00 0.00 37.84 3.41
893 907 4.326826 TCCTCTTGCCAAATGTAAGTCAG 58.673 43.478 0.00 0.00 37.84 3.51
894 908 4.074970 CCTCTTGCCAAATGTAAGTCAGT 58.925 43.478 0.00 0.00 37.84 3.41
895 909 4.154918 CCTCTTGCCAAATGTAAGTCAGTC 59.845 45.833 0.00 0.00 37.84 3.51
896 910 4.973168 TCTTGCCAAATGTAAGTCAGTCT 58.027 39.130 0.00 0.00 37.84 3.24
897 911 4.997395 TCTTGCCAAATGTAAGTCAGTCTC 59.003 41.667 0.00 0.00 37.84 3.36
898 912 4.623932 TGCCAAATGTAAGTCAGTCTCT 57.376 40.909 0.00 0.00 0.00 3.10
899 913 4.569943 TGCCAAATGTAAGTCAGTCTCTC 58.430 43.478 0.00 0.00 0.00 3.20
1073 1101 3.184683 GAACGCCGAGAGCAGCAG 61.185 66.667 0.00 0.00 44.04 4.24
1104 1132 1.065126 AGCATCAAGGAGGTAGTTGGC 60.065 52.381 0.00 0.00 0.00 4.52
1346 1380 0.620556 AGTCCGGTTGCCATGAAGAT 59.379 50.000 0.00 0.00 0.00 2.40
1393 1427 4.277009 TCACCATGGCACCGGCAA 62.277 61.111 13.04 0.00 42.43 4.52
1581 1621 3.050275 GCAGTGGCCACGAAGACC 61.050 66.667 29.68 11.79 36.20 3.85
1611 1666 4.357279 GCTCCCAGCCCAGTTGCT 62.357 66.667 0.00 0.00 44.00 3.91
1619 1674 2.186903 CCCAGTTGCTACGGCGAT 59.813 61.111 16.62 0.00 42.25 4.58
1767 1822 5.115480 GCCATCTTAGAGGTGAAGAAGAAG 58.885 45.833 0.00 0.00 36.54 2.85
2245 2343 3.745797 GCCCATGGAGAAGATCAAGTACC 60.746 52.174 15.22 0.00 0.00 3.34
2295 2399 2.359230 GAGCACCGCCTTCTGCTT 60.359 61.111 0.00 0.00 43.94 3.91
2651 2791 1.049289 AGCTAGCCCCCGAGTTAAGG 61.049 60.000 12.13 0.00 0.00 2.69
2719 2861 2.979813 GCGTGCTGTTCTATTTTGGTTG 59.020 45.455 0.00 0.00 0.00 3.77
2721 2863 3.611530 CGTGCTGTTCTATTTTGGTTGGG 60.612 47.826 0.00 0.00 0.00 4.12
2794 2939 6.274322 TGGTTATGGGCCTTCACTAATTAT 57.726 37.500 4.53 0.00 0.00 1.28
2797 2942 6.948309 GGTTATGGGCCTTCACTAATTATCAT 59.052 38.462 4.53 0.00 0.00 2.45
2857 3003 5.301805 ACCCAATTTTTGAGTAAGACCTGTG 59.698 40.000 0.00 0.00 0.00 3.66
2858 3004 5.534654 CCCAATTTTTGAGTAAGACCTGTGA 59.465 40.000 0.00 0.00 0.00 3.58
2880 3026 3.068064 GGATTTGGGGCACACGGG 61.068 66.667 0.00 0.00 0.00 5.28
2942 3089 1.062258 TTTCGTGTATTCGTCGGTGC 58.938 50.000 0.00 0.00 0.00 5.01
2952 3099 2.768833 TCGTCGGTGCATATCAGTAC 57.231 50.000 0.00 0.00 0.00 2.73
3012 3159 4.807304 TCTGTTGACTCGTTTACAAAGGTC 59.193 41.667 0.00 0.00 0.00 3.85
3014 3161 2.746269 TGACTCGTTTACAAAGGTCCG 58.254 47.619 0.00 0.00 0.00 4.79
3033 3180 7.495055 AGGTCCGTATATTTCGATAAACAGTT 58.505 34.615 0.00 0.00 0.00 3.16
3034 3181 7.650903 AGGTCCGTATATTTCGATAAACAGTTC 59.349 37.037 0.00 0.00 0.00 3.01
3046 3193 7.812648 TCGATAAACAGTTCCTGTAAAAATGG 58.187 34.615 0.00 0.00 44.62 3.16
3047 3194 7.446013 TCGATAAACAGTTCCTGTAAAAATGGT 59.554 33.333 0.00 0.00 44.62 3.55
3048 3195 8.723311 CGATAAACAGTTCCTGTAAAAATGGTA 58.277 33.333 0.00 0.00 44.62 3.25
3049 3196 9.836076 GATAAACAGTTCCTGTAAAAATGGTAC 57.164 33.333 0.00 0.00 44.62 3.34
3051 3198 8.983702 AAACAGTTCCTGTAAAAATGGTACTA 57.016 30.769 0.00 0.00 44.62 1.82
3055 3202 9.673454 CAGTTCCTGTAAAAATGGTACTAAAAC 57.327 33.333 0.00 0.00 31.75 2.43
3075 3222 3.728845 ACGCTAGACTTTTGCTGAAAGA 58.271 40.909 16.56 0.00 46.24 2.52
3079 3226 5.613577 CGCTAGACTTTTGCTGAAAGAGTTC 60.614 44.000 16.56 6.98 46.24 3.01
3080 3227 5.237344 GCTAGACTTTTGCTGAAAGAGTTCA 59.763 40.000 16.56 0.00 46.24 3.18
3095 3242 7.225538 TGAAAGAGTTCAATGTGTTCTTCTCTC 59.774 37.037 0.00 0.00 40.87 3.20
3130 3277 5.799827 ATAAGTATCCACTGCTTCTCCTC 57.200 43.478 0.00 0.00 34.36 3.71
3132 3279 3.718723 AGTATCCACTGCTTCTCCTCTT 58.281 45.455 0.00 0.00 32.25 2.85
3152 3299 8.638873 TCCTCTTCTTTTTATTTTGAAAGGTCC 58.361 33.333 0.00 0.00 34.45 4.46
3159 3306 3.855689 ATTTTGAAAGGTCCAGCATCG 57.144 42.857 0.00 0.00 0.00 3.84
3160 3307 2.270352 TTTGAAAGGTCCAGCATCGT 57.730 45.000 0.00 0.00 0.00 3.73
3161 3308 2.270352 TTGAAAGGTCCAGCATCGTT 57.730 45.000 0.00 0.00 0.00 3.85
3162 3309 1.522668 TGAAAGGTCCAGCATCGTTG 58.477 50.000 0.00 0.00 0.00 4.10
3163 3310 0.804989 GAAAGGTCCAGCATCGTTGG 59.195 55.000 0.00 0.00 37.04 3.77
3164 3311 1.244019 AAAGGTCCAGCATCGTTGGC 61.244 55.000 0.00 0.00 35.62 4.52
3165 3312 2.359850 GGTCCAGCATCGTTGGCA 60.360 61.111 0.00 0.00 35.62 4.92
3166 3313 1.750399 GGTCCAGCATCGTTGGCAT 60.750 57.895 0.00 0.00 35.62 4.40
3167 3314 1.315257 GGTCCAGCATCGTTGGCATT 61.315 55.000 0.00 0.00 35.62 3.56
3168 3315 0.099436 GTCCAGCATCGTTGGCATTC 59.901 55.000 0.00 0.00 35.62 2.67
3169 3316 1.031571 TCCAGCATCGTTGGCATTCC 61.032 55.000 0.00 0.00 35.62 3.01
3170 3317 1.314534 CCAGCATCGTTGGCATTCCA 61.315 55.000 0.00 0.00 41.55 3.53
3171 3318 0.742505 CAGCATCGTTGGCATTCCAT 59.257 50.000 0.00 0.00 43.05 3.41
3172 3319 1.135527 CAGCATCGTTGGCATTCCATT 59.864 47.619 0.00 0.00 43.05 3.16
3173 3320 1.135527 AGCATCGTTGGCATTCCATTG 59.864 47.619 0.00 0.00 43.05 2.82
3174 3321 1.134753 GCATCGTTGGCATTCCATTGA 59.865 47.619 0.00 0.00 43.05 2.57
3175 3322 2.223876 GCATCGTTGGCATTCCATTGAT 60.224 45.455 0.00 0.00 43.05 2.57
3176 3323 3.004629 GCATCGTTGGCATTCCATTGATA 59.995 43.478 0.00 0.00 43.05 2.15
3177 3324 4.499526 GCATCGTTGGCATTCCATTGATAA 60.500 41.667 0.00 0.00 43.05 1.75
3178 3325 5.775686 CATCGTTGGCATTCCATTGATAAT 58.224 37.500 0.00 0.00 43.05 1.28
3179 3326 6.570186 GCATCGTTGGCATTCCATTGATAATA 60.570 38.462 0.00 0.00 43.05 0.98
3180 3327 6.558771 TCGTTGGCATTCCATTGATAATAG 57.441 37.500 0.00 0.00 43.05 1.73
3181 3328 5.048782 TCGTTGGCATTCCATTGATAATAGC 60.049 40.000 0.00 0.00 43.05 2.97
3182 3329 5.278414 CGTTGGCATTCCATTGATAATAGCA 60.278 40.000 0.00 0.00 43.05 3.49
3183 3330 6.514947 GTTGGCATTCCATTGATAATAGCAA 58.485 36.000 0.00 0.00 43.05 3.91
3184 3331 6.335471 TGGCATTCCATTGATAATAGCAAG 57.665 37.500 0.00 0.00 37.47 4.01
3185 3332 6.069994 TGGCATTCCATTGATAATAGCAAGA 58.930 36.000 0.00 0.00 37.47 3.02
3186 3333 6.208007 TGGCATTCCATTGATAATAGCAAGAG 59.792 38.462 0.00 0.00 37.47 2.85
3187 3334 6.432162 GGCATTCCATTGATAATAGCAAGAGA 59.568 38.462 0.00 0.00 0.00 3.10
3188 3335 7.361885 GGCATTCCATTGATAATAGCAAGAGAG 60.362 40.741 0.00 0.00 0.00 3.20
3189 3336 7.528307 CATTCCATTGATAATAGCAAGAGAGC 58.472 38.462 0.00 0.00 0.00 4.09
3190 3337 6.178607 TCCATTGATAATAGCAAGAGAGCA 57.821 37.500 0.00 0.00 36.85 4.26
3191 3338 6.594744 TCCATTGATAATAGCAAGAGAGCAA 58.405 36.000 0.00 0.00 36.85 3.91
3192 3339 6.484643 TCCATTGATAATAGCAAGAGAGCAAC 59.515 38.462 0.00 0.00 36.85 4.17
3193 3340 6.485984 CCATTGATAATAGCAAGAGAGCAACT 59.514 38.462 0.00 0.00 36.85 3.16
3194 3341 7.307870 CCATTGATAATAGCAAGAGAGCAACTC 60.308 40.741 0.00 3.25 45.22 3.01
3195 3342 5.605534 TGATAATAGCAAGAGAGCAACTCC 58.394 41.667 7.20 0.00 45.96 3.85
3196 3343 3.988976 AATAGCAAGAGAGCAACTCCA 57.011 42.857 7.20 0.00 45.96 3.86
3197 3344 4.500499 AATAGCAAGAGAGCAACTCCAT 57.500 40.909 7.20 0.00 45.96 3.41
3198 3345 2.875094 AGCAAGAGAGCAACTCCATT 57.125 45.000 7.20 0.00 45.96 3.16
3199 3346 2.434428 AGCAAGAGAGCAACTCCATTG 58.566 47.619 7.20 7.56 45.96 2.82
3200 3347 2.039480 AGCAAGAGAGCAACTCCATTGA 59.961 45.455 11.49 0.00 45.96 2.57
3201 3348 3.015327 GCAAGAGAGCAACTCCATTGAT 58.985 45.455 11.49 0.00 45.96 2.57
3202 3349 4.080695 AGCAAGAGAGCAACTCCATTGATA 60.081 41.667 11.49 0.00 45.96 2.15
3203 3350 4.637534 GCAAGAGAGCAACTCCATTGATAA 59.362 41.667 11.49 0.00 45.96 1.75
3204 3351 5.298777 GCAAGAGAGCAACTCCATTGATAAT 59.701 40.000 11.49 0.00 45.96 1.28
3205 3352 6.484643 GCAAGAGAGCAACTCCATTGATAATA 59.515 38.462 11.49 0.00 45.96 0.98
3206 3353 7.307870 GCAAGAGAGCAACTCCATTGATAATAG 60.308 40.741 11.49 0.00 45.96 1.73
3207 3354 6.229733 AGAGAGCAACTCCATTGATAATAGC 58.770 40.000 7.20 0.00 45.96 2.97
3208 3355 5.933617 AGAGCAACTCCATTGATAATAGCA 58.066 37.500 0.00 0.00 41.23 3.49
3209 3356 6.359804 AGAGCAACTCCATTGATAATAGCAA 58.640 36.000 0.00 0.00 41.23 3.91
3210 3357 6.485984 AGAGCAACTCCATTGATAATAGCAAG 59.514 38.462 0.00 0.00 41.23 4.01
3211 3358 6.359804 AGCAACTCCATTGATAATAGCAAGA 58.640 36.000 0.00 0.00 41.23 3.02
3212 3359 6.485984 AGCAACTCCATTGATAATAGCAAGAG 59.514 38.462 6.13 6.13 41.23 2.85
3213 3360 6.484643 GCAACTCCATTGATAATAGCAAGAGA 59.515 38.462 12.43 4.34 41.23 3.10
3214 3361 7.307870 GCAACTCCATTGATAATAGCAAGAGAG 60.308 40.741 12.43 13.62 41.23 3.20
3215 3362 6.229733 ACTCCATTGATAATAGCAAGAGAGC 58.770 40.000 15.66 0.00 34.35 4.09
3216 3363 6.178607 TCCATTGATAATAGCAAGAGAGCA 57.821 37.500 0.00 0.00 36.85 4.26
3217 3364 6.594744 TCCATTGATAATAGCAAGAGAGCAA 58.405 36.000 0.00 0.00 36.85 3.91
3218 3365 6.484643 TCCATTGATAATAGCAAGAGAGCAAC 59.515 38.462 0.00 0.00 36.85 4.17
3219 3366 5.973651 TTGATAATAGCAAGAGAGCAACG 57.026 39.130 0.00 0.00 36.85 4.10
3220 3367 4.371786 TGATAATAGCAAGAGAGCAACGG 58.628 43.478 0.00 0.00 36.85 4.44
3221 3368 4.099419 TGATAATAGCAAGAGAGCAACGGA 59.901 41.667 0.00 0.00 36.85 4.69
3222 3369 3.334583 AATAGCAAGAGAGCAACGGAA 57.665 42.857 0.00 0.00 36.85 4.30
3223 3370 2.831685 TAGCAAGAGAGCAACGGAAA 57.168 45.000 0.00 0.00 36.85 3.13
3224 3371 2.191128 AGCAAGAGAGCAACGGAAAT 57.809 45.000 0.00 0.00 36.85 2.17
3225 3372 2.079925 AGCAAGAGAGCAACGGAAATC 58.920 47.619 0.00 0.00 36.85 2.17
3226 3373 1.201965 GCAAGAGAGCAACGGAAATCG 60.202 52.381 0.00 0.00 45.88 3.34
3227 3374 2.337583 CAAGAGAGCAACGGAAATCGA 58.662 47.619 0.00 0.00 42.43 3.59
3228 3375 2.932614 CAAGAGAGCAACGGAAATCGAT 59.067 45.455 0.00 0.00 42.43 3.59
3229 3376 4.112634 CAAGAGAGCAACGGAAATCGATA 58.887 43.478 0.00 0.00 42.43 2.92
3230 3377 4.592485 AGAGAGCAACGGAAATCGATAT 57.408 40.909 0.00 0.00 42.43 1.63
3231 3378 4.302455 AGAGAGCAACGGAAATCGATATG 58.698 43.478 0.00 0.00 42.43 1.78
3232 3379 4.038042 AGAGAGCAACGGAAATCGATATGA 59.962 41.667 0.00 0.00 42.43 2.15
3233 3380 4.887748 AGAGCAACGGAAATCGATATGAT 58.112 39.130 0.00 0.00 42.43 2.45
3234 3381 4.687948 AGAGCAACGGAAATCGATATGATG 59.312 41.667 0.00 0.00 42.43 3.07
3235 3382 3.748048 AGCAACGGAAATCGATATGATGG 59.252 43.478 0.00 0.00 42.43 3.51
3236 3383 3.498397 GCAACGGAAATCGATATGATGGT 59.502 43.478 0.00 0.00 42.43 3.55
3237 3384 4.611355 GCAACGGAAATCGATATGATGGTG 60.611 45.833 0.00 0.00 42.43 4.17
3238 3385 4.600692 ACGGAAATCGATATGATGGTGA 57.399 40.909 0.00 0.00 42.43 4.02
3239 3386 4.956085 ACGGAAATCGATATGATGGTGAA 58.044 39.130 0.00 0.00 42.43 3.18
3240 3387 4.991056 ACGGAAATCGATATGATGGTGAAG 59.009 41.667 0.00 0.00 42.43 3.02
3241 3388 4.389992 CGGAAATCGATATGATGGTGAAGG 59.610 45.833 0.00 0.00 42.43 3.46
3242 3389 5.308825 GGAAATCGATATGATGGTGAAGGT 58.691 41.667 0.00 0.00 37.39 3.50
3243 3390 5.409826 GGAAATCGATATGATGGTGAAGGTC 59.590 44.000 0.00 0.00 37.39 3.85
3244 3391 4.543590 ATCGATATGATGGTGAAGGTCC 57.456 45.455 0.00 0.00 35.45 4.46
3245 3392 3.576861 TCGATATGATGGTGAAGGTCCT 58.423 45.455 0.00 0.00 0.00 3.85
3246 3393 4.736473 TCGATATGATGGTGAAGGTCCTA 58.264 43.478 0.00 0.00 0.00 2.94
3247 3394 4.767409 TCGATATGATGGTGAAGGTCCTAG 59.233 45.833 0.00 0.00 0.00 3.02
3248 3395 4.081972 CGATATGATGGTGAAGGTCCTAGG 60.082 50.000 0.82 0.82 0.00 3.02
3256 3403 3.075148 GTGAAGGTCCTAGGAGCAAAAC 58.925 50.000 35.93 26.36 44.24 2.43
3259 3406 3.141767 AGGTCCTAGGAGCAAAACAAC 57.858 47.619 35.93 12.60 44.24 3.32
3268 3415 2.691011 GGAGCAAAACAACAAGGTGGTA 59.309 45.455 0.00 0.00 0.00 3.25
3271 3418 5.153950 AGCAAAACAACAAGGTGGTAAAA 57.846 34.783 0.00 0.00 0.00 1.52
3332 3479 1.780503 AAACATCAGCCCCAATAGCC 58.219 50.000 0.00 0.00 0.00 3.93
3345 3492 1.396996 CAATAGCCGTAGCACAACACC 59.603 52.381 0.00 0.00 43.56 4.16
3347 3494 2.175035 TAGCCGTAGCACAACACCCC 62.175 60.000 0.00 0.00 43.56 4.95
3361 3508 1.828595 ACACCCCAAAGAAAACCACAC 59.171 47.619 0.00 0.00 0.00 3.82
3373 3520 3.848272 AAACCACACAAGACAACACAG 57.152 42.857 0.00 0.00 0.00 3.66
3380 3527 1.070758 ACAAGACAACACAGCTCCGAT 59.929 47.619 0.00 0.00 0.00 4.18
3397 3544 1.635663 GATTCCGGTGGTGAACTGCG 61.636 60.000 0.00 0.00 33.36 5.18
3425 3572 0.324943 AGGCAAGGTTAGCGTCACAT 59.675 50.000 0.00 0.00 0.00 3.21
3434 3581 0.596577 TAGCGTCACATAGGATCGCC 59.403 55.000 0.00 0.00 46.49 5.54
3435 3582 2.016704 GCGTCACATAGGATCGCCG 61.017 63.158 0.00 0.00 40.83 6.46
3453 3600 1.067425 CCGAACGAACCACCTATCACA 60.067 52.381 0.00 0.00 0.00 3.58
3469 3616 6.041637 ACCTATCACACGTCATTGTATACCAT 59.958 38.462 0.00 0.00 0.00 3.55
3478 3625 1.502690 TTGTATACCATCGGTGCCCT 58.497 50.000 0.00 0.00 36.19 5.19
3515 3662 4.671377 GATTTCACAGCAACAAACAGTCA 58.329 39.130 0.00 0.00 0.00 3.41
3528 3675 2.113139 AGTCAAGGCAACCCCACG 59.887 61.111 0.00 0.00 35.39 4.94
3531 3678 2.983592 CAAGGCAACCCCACGGAC 60.984 66.667 0.00 0.00 35.39 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 9.023962 TGCCAATTTTCATACTAATTCTCTTGT 57.976 29.630 0.00 0.00 0.00 3.16
30 31 9.512435 CTGCCAATTTTCATACTAATTCTCTTG 57.488 33.333 0.00 0.00 0.00 3.02
31 32 8.193438 GCTGCCAATTTTCATACTAATTCTCTT 58.807 33.333 0.00 0.00 0.00 2.85
32 33 7.201857 GGCTGCCAATTTTCATACTAATTCTCT 60.202 37.037 15.17 0.00 0.00 3.10
33 34 6.920210 GGCTGCCAATTTTCATACTAATTCTC 59.080 38.462 15.17 0.00 0.00 2.87
34 35 6.608808 AGGCTGCCAATTTTCATACTAATTCT 59.391 34.615 22.65 0.00 0.00 2.40
35 36 6.809869 AGGCTGCCAATTTTCATACTAATTC 58.190 36.000 22.65 0.00 0.00 2.17
36 37 6.796785 AGGCTGCCAATTTTCATACTAATT 57.203 33.333 22.65 0.00 0.00 1.40
37 38 6.796785 AAGGCTGCCAATTTTCATACTAAT 57.203 33.333 22.65 0.00 0.00 1.73
38 39 7.177568 TGTTAAGGCTGCCAATTTTCATACTAA 59.822 33.333 22.65 0.00 0.00 2.24
39 40 6.661377 TGTTAAGGCTGCCAATTTTCATACTA 59.339 34.615 22.65 0.00 0.00 1.82
40 41 5.480073 TGTTAAGGCTGCCAATTTTCATACT 59.520 36.000 22.65 0.00 0.00 2.12
41 42 5.719173 TGTTAAGGCTGCCAATTTTCATAC 58.281 37.500 22.65 6.40 0.00 2.39
42 43 5.991933 TGTTAAGGCTGCCAATTTTCATA 57.008 34.783 22.65 0.00 0.00 2.15
43 44 4.888326 TGTTAAGGCTGCCAATTTTCAT 57.112 36.364 22.65 0.00 0.00 2.57
44 45 4.888326 ATGTTAAGGCTGCCAATTTTCA 57.112 36.364 22.65 11.92 0.00 2.69
45 46 5.109210 GGTATGTTAAGGCTGCCAATTTTC 58.891 41.667 22.65 6.56 0.00 2.29
46 47 4.530161 TGGTATGTTAAGGCTGCCAATTTT 59.470 37.500 22.65 8.83 0.00 1.82
47 48 4.093011 TGGTATGTTAAGGCTGCCAATTT 58.907 39.130 22.65 9.22 0.00 1.82
48 49 3.707316 TGGTATGTTAAGGCTGCCAATT 58.293 40.909 22.65 10.00 0.00 2.32
49 50 3.380471 TGGTATGTTAAGGCTGCCAAT 57.620 42.857 22.65 11.86 0.00 3.16
50 51 2.889170 TGGTATGTTAAGGCTGCCAA 57.111 45.000 22.65 4.14 0.00 4.52
51 52 2.823154 GTTTGGTATGTTAAGGCTGCCA 59.177 45.455 22.65 0.00 0.00 4.92
52 53 3.089284 AGTTTGGTATGTTAAGGCTGCC 58.911 45.455 11.65 11.65 0.00 4.85
53 54 4.941873 ACTAGTTTGGTATGTTAAGGCTGC 59.058 41.667 0.00 0.00 0.00 5.25
54 55 6.313905 CAGACTAGTTTGGTATGTTAAGGCTG 59.686 42.308 5.50 0.00 32.91 4.85
55 56 6.013639 ACAGACTAGTTTGGTATGTTAAGGCT 60.014 38.462 17.01 0.00 35.95 4.58
56 57 6.171213 ACAGACTAGTTTGGTATGTTAAGGC 58.829 40.000 17.01 0.00 35.95 4.35
57 58 9.886132 ATAACAGACTAGTTTGGTATGTTAAGG 57.114 33.333 20.13 0.00 46.75 2.69
61 62 9.569122 AACAATAACAGACTAGTTTGGTATGTT 57.431 29.630 21.18 20.96 46.30 2.71
62 63 9.216117 GAACAATAACAGACTAGTTTGGTATGT 57.784 33.333 21.18 17.57 40.22 2.29
63 64 9.214957 TGAACAATAACAGACTAGTTTGGTATG 57.785 33.333 21.18 17.08 29.39 2.39
64 65 9.959721 ATGAACAATAACAGACTAGTTTGGTAT 57.040 29.630 16.27 16.27 29.97 2.73
65 66 9.214957 CATGAACAATAACAGACTAGTTTGGTA 57.785 33.333 13.11 13.11 33.07 3.25
66 67 7.174946 CCATGAACAATAACAGACTAGTTTGGT 59.825 37.037 17.01 13.34 33.07 3.67
67 68 7.390440 TCCATGAACAATAACAGACTAGTTTGG 59.610 37.037 17.01 3.43 33.07 3.28
68 69 8.230486 GTCCATGAACAATAACAGACTAGTTTG 58.770 37.037 11.68 11.68 33.07 2.93
69 70 7.936847 TGTCCATGAACAATAACAGACTAGTTT 59.063 33.333 0.00 0.00 33.07 2.66
70 71 7.450074 TGTCCATGAACAATAACAGACTAGTT 58.550 34.615 0.00 0.00 35.55 2.24
71 72 7.004555 TGTCCATGAACAATAACAGACTAGT 57.995 36.000 0.00 0.00 0.00 2.57
72 73 7.276658 GTCTGTCCATGAACAATAACAGACTAG 59.723 40.741 23.48 0.00 46.12 2.57
73 74 7.097192 GTCTGTCCATGAACAATAACAGACTA 58.903 38.462 23.48 5.46 46.12 2.59
74 75 5.934625 GTCTGTCCATGAACAATAACAGACT 59.065 40.000 23.48 0.00 46.12 3.24
75 76 6.170675 GTCTGTCCATGAACAATAACAGAC 57.829 41.667 20.01 20.01 44.99 3.51
76 77 6.114187 AGTCTGTCCATGAACAATAACAGA 57.886 37.500 0.00 0.00 37.67 3.41
77 78 6.808008 AAGTCTGTCCATGAACAATAACAG 57.192 37.500 0.00 0.00 34.64 3.16
78 79 7.581213 AAAAGTCTGTCCATGAACAATAACA 57.419 32.000 0.00 0.00 0.00 2.41
141 142 9.705290 CCAGCCACAAAAATTTAAAATAGTACT 57.295 29.630 0.00 0.00 0.00 2.73
142 143 9.483916 ACCAGCCACAAAAATTTAAAATAGTAC 57.516 29.630 0.00 0.00 0.00 2.73
143 144 9.699703 GACCAGCCACAAAAATTTAAAATAGTA 57.300 29.630 0.00 0.00 0.00 1.82
144 145 8.428852 AGACCAGCCACAAAAATTTAAAATAGT 58.571 29.630 0.00 0.00 0.00 2.12
145 146 8.831715 AGACCAGCCACAAAAATTTAAAATAG 57.168 30.769 0.00 0.00 0.00 1.73
146 147 9.267084 GAAGACCAGCCACAAAAATTTAAAATA 57.733 29.630 0.00 0.00 0.00 1.40
147 148 7.772757 TGAAGACCAGCCACAAAAATTTAAAAT 59.227 29.630 0.00 0.00 0.00 1.82
148 149 7.065204 GTGAAGACCAGCCACAAAAATTTAAAA 59.935 33.333 0.00 0.00 0.00 1.52
149 150 6.536941 GTGAAGACCAGCCACAAAAATTTAAA 59.463 34.615 0.00 0.00 0.00 1.52
150 151 6.045955 GTGAAGACCAGCCACAAAAATTTAA 58.954 36.000 0.00 0.00 0.00 1.52
151 152 5.127845 TGTGAAGACCAGCCACAAAAATTTA 59.872 36.000 0.00 0.00 37.80 1.40
152 153 4.081198 TGTGAAGACCAGCCACAAAAATTT 60.081 37.500 0.00 0.00 37.80 1.82
153 154 3.450457 TGTGAAGACCAGCCACAAAAATT 59.550 39.130 0.00 0.00 37.80 1.82
154 155 3.030291 TGTGAAGACCAGCCACAAAAAT 58.970 40.909 0.00 0.00 37.80 1.82
155 156 2.451490 TGTGAAGACCAGCCACAAAAA 58.549 42.857 0.00 0.00 37.80 1.94
156 157 2.136298 TGTGAAGACCAGCCACAAAA 57.864 45.000 0.00 0.00 37.80 2.44
157 158 2.136298 TTGTGAAGACCAGCCACAAA 57.864 45.000 0.00 0.00 44.66 2.83
158 159 2.136298 TTTGTGAAGACCAGCCACAA 57.864 45.000 0.00 0.00 45.56 3.33
159 160 2.363306 ATTTGTGAAGACCAGCCACA 57.637 45.000 0.00 0.00 38.83 4.17
160 161 2.029918 GGAATTTGTGAAGACCAGCCAC 60.030 50.000 0.00 0.00 0.00 5.01
161 162 2.238521 GGAATTTGTGAAGACCAGCCA 58.761 47.619 0.00 0.00 0.00 4.75
162 163 2.238521 TGGAATTTGTGAAGACCAGCC 58.761 47.619 0.00 0.00 0.00 4.85
163 164 3.256631 ACATGGAATTTGTGAAGACCAGC 59.743 43.478 0.00 0.00 31.06 4.85
164 165 5.458041 AACATGGAATTTGTGAAGACCAG 57.542 39.130 0.00 0.00 31.06 4.00
165 166 5.867903 AAACATGGAATTTGTGAAGACCA 57.132 34.783 0.00 0.00 0.00 4.02
166 167 8.655651 TTAAAAACATGGAATTTGTGAAGACC 57.344 30.769 0.00 0.00 0.00 3.85
180 181 9.152851 CGCTTAAAACACATTTTAAAAACATGG 57.847 29.630 4.44 0.00 45.30 3.66
181 182 9.695884 ACGCTTAAAACACATTTTAAAAACATG 57.304 25.926 4.44 6.35 45.30 3.21
222 223 6.302786 GTGCGAAACGTTTTATCCGAATTTTA 59.697 34.615 20.01 0.81 0.00 1.52
280 281 0.725686 TGTCGGTTTTTCGCGAAACA 59.274 45.000 32.32 24.20 40.44 2.83
298 299 1.179332 CACACGCGACACAAAAGTTG 58.821 50.000 15.93 0.00 0.00 3.16
299 300 1.080298 TCACACGCGACACAAAAGTT 58.920 45.000 15.93 0.00 0.00 2.66
300 301 1.080298 TTCACACGCGACACAAAAGT 58.920 45.000 15.93 0.00 0.00 2.66
345 347 5.859205 AAAAGATGACTTGTGAAAAGCCT 57.141 34.783 0.00 0.00 36.39 4.58
369 372 7.840342 TTTGTGTTGCTTGTGTGAAAAATAT 57.160 28.000 0.00 0.00 0.00 1.28
386 389 3.194062 CGGAAAACCAGCAATTTGTGTT 58.806 40.909 0.00 0.00 0.00 3.32
388 391 2.539274 CACGGAAAACCAGCAATTTGTG 59.461 45.455 0.00 0.00 0.00 3.33
390 393 3.090952 TCACGGAAAACCAGCAATTTG 57.909 42.857 0.00 0.00 0.00 2.32
397 400 2.798145 GCCAAGTTTCACGGAAAACCAG 60.798 50.000 10.25 4.92 39.46 4.00
398 401 1.135333 GCCAAGTTTCACGGAAAACCA 59.865 47.619 10.25 0.00 39.46 3.67
422 425 7.201830 CCCATACATCTCTATATTCTACGTGGG 60.202 44.444 0.00 0.00 33.80 4.61
423 426 7.339721 ACCCATACATCTCTATATTCTACGTGG 59.660 40.741 0.00 0.00 0.00 4.94
436 439 8.655935 AAGAAAAATTTGACCCATACATCTCT 57.344 30.769 0.00 0.00 0.00 3.10
445 448 8.586879 AAATTTCCAAAGAAAAATTTGACCCA 57.413 26.923 5.32 0.00 44.91 4.51
458 461 8.628630 AAAAAGGTGACAAAAATTTCCAAAGA 57.371 26.923 0.00 0.00 0.00 2.52
488 495 3.070878 TCCTGCCATGGGAAAAAGTTTTC 59.929 43.478 15.13 7.81 44.38 2.29
492 499 1.928868 CTCCTGCCATGGGAAAAAGT 58.071 50.000 15.13 0.00 31.92 2.66
513 520 5.455392 TTGGCACATGGGAGCATATATAT 57.545 39.130 0.00 0.00 39.30 0.86
514 521 4.925390 TTGGCACATGGGAGCATATATA 57.075 40.909 0.00 0.00 39.30 0.86
515 522 3.812611 TTGGCACATGGGAGCATATAT 57.187 42.857 0.00 0.00 39.30 0.86
516 523 3.117550 ACTTTGGCACATGGGAGCATATA 60.118 43.478 0.00 0.00 39.30 0.86
526 533 1.747355 GGAGATCCACTTTGGCACATG 59.253 52.381 0.00 0.00 37.47 3.21
543 550 4.603989 ACAGCATATGTGAGATGAGGAG 57.396 45.455 4.29 0.00 41.91 3.69
547 554 9.223099 CCATATTTAACAGCATATGTGAGATGA 57.777 33.333 4.29 0.00 43.00 2.92
555 562 8.292448 GGACTTGTCCATATTTAACAGCATATG 58.708 37.037 14.34 0.00 34.39 1.78
600 614 6.660521 TGTGAGGCTTGAAACAATCAGAATAT 59.339 34.615 0.00 0.00 39.77 1.28
601 615 6.003326 TGTGAGGCTTGAAACAATCAGAATA 58.997 36.000 0.00 0.00 39.77 1.75
602 616 4.828939 TGTGAGGCTTGAAACAATCAGAAT 59.171 37.500 0.00 0.00 39.77 2.40
607 621 3.565482 TGAGTGTGAGGCTTGAAACAATC 59.435 43.478 11.53 11.53 37.95 2.67
612 626 3.281727 AACTGAGTGTGAGGCTTGAAA 57.718 42.857 0.00 0.00 0.00 2.69
653 667 5.952387 TCCTCCATCGGGAAATATTCAAAT 58.048 37.500 0.00 0.00 44.38 2.32
654 668 5.376625 CTCCTCCATCGGGAAATATTCAAA 58.623 41.667 0.00 0.00 44.38 2.69
694 708 1.684983 GTCGGAAGGACGGGATGAATA 59.315 52.381 0.00 0.00 35.61 1.75
714 728 8.319881 AGTCTATCATGAACCATTAGATCATGG 58.680 37.037 9.92 9.92 46.57 3.66
729 743 1.683385 CGGTGCTCCAGTCTATCATGA 59.317 52.381 5.52 0.00 0.00 3.07
739 753 0.179100 CAGGTGATACGGTGCTCCAG 60.179 60.000 5.52 0.57 0.00 3.86
773 787 5.827756 TGTGGAGTGAGGAGAAAGTATCTA 58.172 41.667 0.00 0.00 38.96 1.98
774 788 4.678256 TGTGGAGTGAGGAGAAAGTATCT 58.322 43.478 0.00 0.00 42.61 1.98
775 789 4.464597 ACTGTGGAGTGAGGAGAAAGTATC 59.535 45.833 0.00 0.00 0.00 2.24
776 790 4.421131 ACTGTGGAGTGAGGAGAAAGTAT 58.579 43.478 0.00 0.00 0.00 2.12
777 791 3.827302 GACTGTGGAGTGAGGAGAAAGTA 59.173 47.826 0.00 0.00 30.16 2.24
778 792 2.630580 GACTGTGGAGTGAGGAGAAAGT 59.369 50.000 0.00 0.00 30.16 2.66
779 793 2.028567 GGACTGTGGAGTGAGGAGAAAG 60.029 54.545 0.00 0.00 30.16 2.62
780 794 1.971357 GGACTGTGGAGTGAGGAGAAA 59.029 52.381 0.00 0.00 30.16 2.52
781 795 1.133167 TGGACTGTGGAGTGAGGAGAA 60.133 52.381 0.00 0.00 30.16 2.87
782 796 0.482887 TGGACTGTGGAGTGAGGAGA 59.517 55.000 0.00 0.00 30.16 3.71
783 797 0.605589 GTGGACTGTGGAGTGAGGAG 59.394 60.000 0.00 0.00 30.16 3.69
784 798 0.188587 AGTGGACTGTGGAGTGAGGA 59.811 55.000 0.00 0.00 30.16 3.71
785 799 0.319728 CAGTGGACTGTGGAGTGAGG 59.680 60.000 0.00 0.00 39.09 3.86
846 860 1.055040 CAAGCTATGGAGGAGAGGGG 58.945 60.000 0.00 0.00 0.00 4.79
892 906 8.650143 AAAATGTAGAGAAAGAGAGAGAGACT 57.350 34.615 0.00 0.00 0.00 3.24
893 907 8.739972 AGAAAATGTAGAGAAAGAGAGAGAGAC 58.260 37.037 0.00 0.00 0.00 3.36
894 908 8.877864 AGAAAATGTAGAGAAAGAGAGAGAGA 57.122 34.615 0.00 0.00 0.00 3.10
895 909 7.910162 CGAGAAAATGTAGAGAAAGAGAGAGAG 59.090 40.741 0.00 0.00 0.00 3.20
896 910 7.627513 GCGAGAAAATGTAGAGAAAGAGAGAGA 60.628 40.741 0.00 0.00 0.00 3.10
897 911 6.472163 GCGAGAAAATGTAGAGAAAGAGAGAG 59.528 42.308 0.00 0.00 0.00 3.20
898 912 6.071896 TGCGAGAAAATGTAGAGAAAGAGAGA 60.072 38.462 0.00 0.00 0.00 3.10
899 913 6.096036 TGCGAGAAAATGTAGAGAAAGAGAG 58.904 40.000 0.00 0.00 0.00 3.20
1011 1039 1.856265 GCTGGTCTGCCGGTTTCTTG 61.856 60.000 1.90 0.00 43.16 3.02
1073 1101 2.816087 TCCTTGATGCTGAACTTCTTGC 59.184 45.455 0.00 0.00 0.00 4.01
1131 1159 2.894257 AACTGGACTGGGCGATGCA 61.894 57.895 0.00 0.00 0.00 3.96
1158 1186 2.282180 ACCACCGCGATTGGCTTT 60.282 55.556 22.37 4.88 40.44 3.51
1193 1221 2.745037 GACCGGTTACTGCCACCA 59.255 61.111 9.42 0.00 33.36 4.17
1290 1318 4.699522 GTGGCCACTGGACCGGTC 62.700 72.222 29.12 27.04 0.00 4.79
1371 1405 3.055719 GGTGCCATGGTGACCACG 61.056 66.667 23.36 0.00 35.80 4.94
1597 1652 2.436646 CGTAGCAACTGGGCTGGG 60.437 66.667 6.38 0.00 45.44 4.45
1598 1653 2.436646 CCGTAGCAACTGGGCTGG 60.437 66.667 6.38 0.00 45.44 4.85
1599 1654 3.127533 GCCGTAGCAACTGGGCTG 61.128 66.667 6.38 0.00 45.44 4.85
1601 1656 4.752879 TCGCCGTAGCAACTGGGC 62.753 66.667 0.00 2.44 42.14 5.36
1602 1657 2.173669 CATCGCCGTAGCAACTGGG 61.174 63.158 0.00 0.00 39.83 4.45
1603 1658 2.813179 GCATCGCCGTAGCAACTGG 61.813 63.158 0.00 0.00 39.83 4.00
1604 1659 2.703409 GCATCGCCGTAGCAACTG 59.297 61.111 0.00 0.00 39.83 3.16
1605 1660 2.511600 GGCATCGCCGTAGCAACT 60.512 61.111 5.97 0.00 39.62 3.16
1745 1800 6.105333 CACTTCTTCTTCACCTCTAAGATGG 58.895 44.000 0.00 0.00 33.17 3.51
2719 2861 0.529992 GCTATAGCACACACGGACCC 60.530 60.000 20.01 0.00 41.59 4.46
2721 2863 1.135083 ACAGCTATAGCACACACGGAC 60.135 52.381 26.07 0.00 45.16 4.79
2857 3003 0.620556 TGTGCCCCAAATCCTCTCTC 59.379 55.000 0.00 0.00 0.00 3.20
2858 3004 0.329596 GTGTGCCCCAAATCCTCTCT 59.670 55.000 0.00 0.00 0.00 3.10
2880 3026 3.195698 GAATCCGCGTGCCCAGAC 61.196 66.667 4.92 0.00 0.00 3.51
2942 3089 4.681483 ACGATGCGAATGTGTACTGATATG 59.319 41.667 0.00 0.00 0.00 1.78
2952 3099 6.304126 ACTTTAACTTTACGATGCGAATGTG 58.696 36.000 0.00 0.00 0.00 3.21
2997 3144 7.514125 CGAAATATACGGACCTTTGTAAACGAG 60.514 40.741 0.00 0.00 0.00 4.18
3012 3159 7.941795 AGGAACTGTTTATCGAAATATACGG 57.058 36.000 0.00 0.00 37.18 4.02
3033 3180 6.711645 AGCGTTTTAGTACCATTTTTACAGGA 59.288 34.615 0.00 0.00 0.00 3.86
3034 3181 6.905578 AGCGTTTTAGTACCATTTTTACAGG 58.094 36.000 0.00 0.00 0.00 4.00
3046 3193 6.145048 TCAGCAAAAGTCTAGCGTTTTAGTAC 59.855 38.462 2.61 0.00 0.00 2.73
3047 3194 6.218019 TCAGCAAAAGTCTAGCGTTTTAGTA 58.782 36.000 2.61 0.00 0.00 1.82
3048 3195 5.054477 TCAGCAAAAGTCTAGCGTTTTAGT 58.946 37.500 2.61 0.00 0.00 2.24
3049 3196 5.591643 TCAGCAAAAGTCTAGCGTTTTAG 57.408 39.130 2.61 0.80 0.00 1.85
3051 3198 4.893424 TTCAGCAAAAGTCTAGCGTTTT 57.107 36.364 0.00 0.00 0.00 2.43
3055 3202 3.743396 ACTCTTTCAGCAAAAGTCTAGCG 59.257 43.478 10.34 0.00 44.07 4.26
3075 3222 5.296151 TGGAGAGAAGAACACATTGAACT 57.704 39.130 0.00 0.00 0.00 3.01
3079 3226 8.899427 ACATATATGGAGAGAAGAACACATTG 57.101 34.615 16.96 0.00 0.00 2.82
3080 3227 9.553064 GAACATATATGGAGAGAAGAACACATT 57.447 33.333 16.96 0.00 0.00 2.71
3115 3262 2.317371 AGAAGAGGAGAAGCAGTGGA 57.683 50.000 0.00 0.00 0.00 4.02
3130 3277 7.710475 TGCTGGACCTTTCAAAATAAAAAGAAG 59.290 33.333 0.00 0.00 35.02 2.85
3132 3279 7.118496 TGCTGGACCTTTCAAAATAAAAAGA 57.882 32.000 0.00 0.00 35.02 2.52
3152 3299 2.182496 TGGAATGCCAACGATGCTG 58.818 52.632 0.00 0.00 42.49 4.41
3162 3309 6.432162 TCTCTTGCTATTATCAATGGAATGCC 59.568 38.462 0.00 0.00 0.00 4.40
3163 3310 7.444629 TCTCTTGCTATTATCAATGGAATGC 57.555 36.000 0.00 0.00 0.00 3.56
3164 3311 7.174426 TGCTCTCTTGCTATTATCAATGGAATG 59.826 37.037 0.00 0.00 0.00 2.67
3165 3312 7.229308 TGCTCTCTTGCTATTATCAATGGAAT 58.771 34.615 0.00 0.00 0.00 3.01
3166 3313 6.594744 TGCTCTCTTGCTATTATCAATGGAA 58.405 36.000 0.00 0.00 0.00 3.53
3167 3314 6.178607 TGCTCTCTTGCTATTATCAATGGA 57.821 37.500 0.00 0.00 0.00 3.41
3168 3315 6.485984 AGTTGCTCTCTTGCTATTATCAATGG 59.514 38.462 0.00 0.00 0.00 3.16
3169 3316 7.307870 GGAGTTGCTCTCTTGCTATTATCAATG 60.308 40.741 8.78 0.00 42.40 2.82
3170 3317 6.709846 GGAGTTGCTCTCTTGCTATTATCAAT 59.290 38.462 8.78 0.00 42.40 2.57
3171 3318 6.051717 GGAGTTGCTCTCTTGCTATTATCAA 58.948 40.000 8.78 0.00 42.40 2.57
3172 3319 5.129320 TGGAGTTGCTCTCTTGCTATTATCA 59.871 40.000 8.78 0.00 42.40 2.15
3173 3320 5.605534 TGGAGTTGCTCTCTTGCTATTATC 58.394 41.667 8.78 0.00 42.40 1.75
3174 3321 5.620738 TGGAGTTGCTCTCTTGCTATTAT 57.379 39.130 8.78 0.00 42.40 1.28
3175 3322 5.620738 ATGGAGTTGCTCTCTTGCTATTA 57.379 39.130 8.78 0.00 42.40 0.98
3176 3323 3.988976 TGGAGTTGCTCTCTTGCTATT 57.011 42.857 8.78 0.00 42.40 1.73
3177 3324 4.080695 TCAATGGAGTTGCTCTCTTGCTAT 60.081 41.667 8.78 0.00 42.40 2.97
3178 3325 3.261643 TCAATGGAGTTGCTCTCTTGCTA 59.738 43.478 8.78 0.00 42.40 3.49
3179 3326 2.039480 TCAATGGAGTTGCTCTCTTGCT 59.961 45.455 8.78 0.00 42.40 3.91
3180 3327 2.430465 TCAATGGAGTTGCTCTCTTGC 58.570 47.619 8.78 0.00 42.40 4.01
3181 3328 6.939132 ATTATCAATGGAGTTGCTCTCTTG 57.061 37.500 8.78 7.08 42.40 3.02
3182 3329 6.709846 GCTATTATCAATGGAGTTGCTCTCTT 59.290 38.462 8.78 0.00 42.40 2.85
3183 3330 6.183361 TGCTATTATCAATGGAGTTGCTCTCT 60.183 38.462 8.78 0.00 42.40 3.10
3184 3331 5.994054 TGCTATTATCAATGGAGTTGCTCTC 59.006 40.000 1.79 1.79 42.07 3.20
3185 3332 5.933617 TGCTATTATCAATGGAGTTGCTCT 58.066 37.500 0.00 0.00 37.74 4.09
3186 3333 6.484643 TCTTGCTATTATCAATGGAGTTGCTC 59.515 38.462 0.00 0.00 37.74 4.26
3187 3334 6.359804 TCTTGCTATTATCAATGGAGTTGCT 58.640 36.000 0.00 0.00 37.74 3.91
3188 3335 6.484643 TCTCTTGCTATTATCAATGGAGTTGC 59.515 38.462 0.00 0.00 37.74 4.17
3189 3336 7.307870 GCTCTCTTGCTATTATCAATGGAGTTG 60.308 40.741 0.00 0.00 39.25 3.16
3190 3337 6.709846 GCTCTCTTGCTATTATCAATGGAGTT 59.290 38.462 0.00 0.00 31.23 3.01
3191 3338 6.183361 TGCTCTCTTGCTATTATCAATGGAGT 60.183 38.462 0.00 0.00 31.23 3.85
3192 3339 6.228995 TGCTCTCTTGCTATTATCAATGGAG 58.771 40.000 0.00 0.00 0.00 3.86
3193 3340 6.178607 TGCTCTCTTGCTATTATCAATGGA 57.821 37.500 0.00 0.00 0.00 3.41
3194 3341 6.565435 CGTTGCTCTCTTGCTATTATCAATGG 60.565 42.308 0.00 0.00 0.00 3.16
3195 3342 6.361114 CGTTGCTCTCTTGCTATTATCAATG 58.639 40.000 0.00 0.00 0.00 2.82
3196 3343 5.468072 CCGTTGCTCTCTTGCTATTATCAAT 59.532 40.000 0.00 0.00 0.00 2.57
3197 3344 4.811024 CCGTTGCTCTCTTGCTATTATCAA 59.189 41.667 0.00 0.00 0.00 2.57
3198 3345 4.099419 TCCGTTGCTCTCTTGCTATTATCA 59.901 41.667 0.00 0.00 0.00 2.15
3199 3346 4.621991 TCCGTTGCTCTCTTGCTATTATC 58.378 43.478 0.00 0.00 0.00 1.75
3200 3347 4.672587 TCCGTTGCTCTCTTGCTATTAT 57.327 40.909 0.00 0.00 0.00 1.28
3201 3348 4.465632 TTCCGTTGCTCTCTTGCTATTA 57.534 40.909 0.00 0.00 0.00 0.98
3202 3349 3.334583 TTCCGTTGCTCTCTTGCTATT 57.665 42.857 0.00 0.00 0.00 1.73
3203 3350 3.334583 TTTCCGTTGCTCTCTTGCTAT 57.665 42.857 0.00 0.00 0.00 2.97
3204 3351 2.831685 TTTCCGTTGCTCTCTTGCTA 57.168 45.000 0.00 0.00 0.00 3.49
3205 3352 2.079925 GATTTCCGTTGCTCTCTTGCT 58.920 47.619 0.00 0.00 0.00 3.91
3206 3353 1.201965 CGATTTCCGTTGCTCTCTTGC 60.202 52.381 0.00 0.00 0.00 4.01
3207 3354 2.337583 TCGATTTCCGTTGCTCTCTTG 58.662 47.619 0.00 0.00 39.75 3.02
3208 3355 2.743636 TCGATTTCCGTTGCTCTCTT 57.256 45.000 0.00 0.00 39.75 2.85
3209 3356 2.969628 ATCGATTTCCGTTGCTCTCT 57.030 45.000 0.00 0.00 39.75 3.10
3210 3357 4.299155 TCATATCGATTTCCGTTGCTCTC 58.701 43.478 1.71 0.00 39.75 3.20
3211 3358 4.322080 TCATATCGATTTCCGTTGCTCT 57.678 40.909 1.71 0.00 39.75 4.09
3212 3359 4.143030 CCATCATATCGATTTCCGTTGCTC 60.143 45.833 1.71 0.00 39.75 4.26
3213 3360 3.748048 CCATCATATCGATTTCCGTTGCT 59.252 43.478 1.71 0.00 39.75 3.91
3214 3361 3.498397 ACCATCATATCGATTTCCGTTGC 59.502 43.478 1.71 0.00 39.75 4.17
3215 3362 4.749598 TCACCATCATATCGATTTCCGTTG 59.250 41.667 1.71 0.00 39.75 4.10
3216 3363 4.956085 TCACCATCATATCGATTTCCGTT 58.044 39.130 1.71 0.00 39.75 4.44
3217 3364 4.600692 TCACCATCATATCGATTTCCGT 57.399 40.909 1.71 0.00 39.75 4.69
3218 3365 4.389992 CCTTCACCATCATATCGATTTCCG 59.610 45.833 1.71 0.00 40.25 4.30
3219 3366 5.308825 ACCTTCACCATCATATCGATTTCC 58.691 41.667 1.71 0.00 29.21 3.13
3220 3367 5.409826 GGACCTTCACCATCATATCGATTTC 59.590 44.000 1.71 0.00 29.21 2.17
3221 3368 5.072329 AGGACCTTCACCATCATATCGATTT 59.928 40.000 1.71 0.00 29.21 2.17
3222 3369 4.594920 AGGACCTTCACCATCATATCGATT 59.405 41.667 1.71 0.00 29.21 3.34
3223 3370 4.163427 AGGACCTTCACCATCATATCGAT 58.837 43.478 2.16 2.16 33.27 3.59
3224 3371 3.576861 AGGACCTTCACCATCATATCGA 58.423 45.455 0.00 0.00 0.00 3.59
3225 3372 4.081972 CCTAGGACCTTCACCATCATATCG 60.082 50.000 1.05 0.00 0.00 2.92
3226 3373 5.087323 TCCTAGGACCTTCACCATCATATC 58.913 45.833 7.62 0.00 0.00 1.63
3227 3374 5.090139 CTCCTAGGACCTTCACCATCATAT 58.910 45.833 7.62 0.00 0.00 1.78
3228 3375 4.483950 CTCCTAGGACCTTCACCATCATA 58.516 47.826 7.62 0.00 0.00 2.15
3229 3376 3.312890 CTCCTAGGACCTTCACCATCAT 58.687 50.000 7.62 0.00 0.00 2.45
3230 3377 2.752030 CTCCTAGGACCTTCACCATCA 58.248 52.381 7.62 0.00 0.00 3.07
3231 3378 1.414550 GCTCCTAGGACCTTCACCATC 59.585 57.143 7.62 0.00 0.00 3.51
3232 3379 1.273838 TGCTCCTAGGACCTTCACCAT 60.274 52.381 7.62 0.00 0.00 3.55
3233 3380 0.116342 TGCTCCTAGGACCTTCACCA 59.884 55.000 7.62 0.00 0.00 4.17
3234 3381 1.276622 TTGCTCCTAGGACCTTCACC 58.723 55.000 7.62 0.00 0.00 4.02
3235 3382 3.075148 GTTTTGCTCCTAGGACCTTCAC 58.925 50.000 7.62 0.00 0.00 3.18
3236 3383 2.708861 TGTTTTGCTCCTAGGACCTTCA 59.291 45.455 7.62 0.73 0.00 3.02
3237 3384 3.418684 TGTTTTGCTCCTAGGACCTTC 57.581 47.619 7.62 0.00 0.00 3.46
3238 3385 3.117663 TGTTGTTTTGCTCCTAGGACCTT 60.118 43.478 7.62 0.00 0.00 3.50
3239 3386 2.441750 TGTTGTTTTGCTCCTAGGACCT 59.558 45.455 7.62 0.00 0.00 3.85
3240 3387 2.858745 TGTTGTTTTGCTCCTAGGACC 58.141 47.619 7.62 1.40 0.00 4.46
3241 3388 3.253432 CCTTGTTGTTTTGCTCCTAGGAC 59.747 47.826 7.62 5.90 0.00 3.85
3242 3389 3.117663 ACCTTGTTGTTTTGCTCCTAGGA 60.118 43.478 11.98 11.98 0.00 2.94
3243 3390 3.004734 CACCTTGTTGTTTTGCTCCTAGG 59.995 47.826 0.82 0.82 0.00 3.02
3244 3391 3.004734 CCACCTTGTTGTTTTGCTCCTAG 59.995 47.826 0.00 0.00 0.00 3.02
3245 3392 2.955660 CCACCTTGTTGTTTTGCTCCTA 59.044 45.455 0.00 0.00 0.00 2.94
3246 3393 1.756538 CCACCTTGTTGTTTTGCTCCT 59.243 47.619 0.00 0.00 0.00 3.69
3247 3394 1.480545 ACCACCTTGTTGTTTTGCTCC 59.519 47.619 0.00 0.00 0.00 4.70
3248 3395 2.959507 ACCACCTTGTTGTTTTGCTC 57.040 45.000 0.00 0.00 0.00 4.26
3256 3403 3.562182 AGGACCTTTTACCACCTTGTTG 58.438 45.455 0.00 0.00 0.00 3.33
3259 3406 5.001874 GTCTTAGGACCTTTTACCACCTTG 58.998 45.833 0.00 0.00 36.53 3.61
3312 3459 2.110578 GGCTATTGGGGCTGATGTTTT 58.889 47.619 0.00 0.00 0.00 2.43
3313 3460 1.780503 GGCTATTGGGGCTGATGTTT 58.219 50.000 0.00 0.00 0.00 2.83
3325 3472 1.396996 GGTGTTGTGCTACGGCTATTG 59.603 52.381 0.00 0.00 39.59 1.90
3332 3479 0.591170 CTTTGGGGTGTTGTGCTACG 59.409 55.000 0.00 0.00 0.00 3.51
3345 3492 3.194542 TGTCTTGTGTGGTTTTCTTTGGG 59.805 43.478 0.00 0.00 0.00 4.12
3347 3494 5.118510 GTGTTGTCTTGTGTGGTTTTCTTTG 59.881 40.000 0.00 0.00 0.00 2.77
3361 3508 1.800805 ATCGGAGCTGTGTTGTCTTG 58.199 50.000 0.00 0.00 0.00 3.02
3380 3527 2.280524 CGCAGTTCACCACCGGAA 60.281 61.111 9.46 0.00 0.00 4.30
3397 3544 3.735514 CGCTAACCTTGCCTACTCTCTTC 60.736 52.174 0.00 0.00 0.00 2.87
3434 3581 1.990563 GTGTGATAGGTGGTTCGTTCG 59.009 52.381 0.00 0.00 0.00 3.95
3435 3582 1.990563 CGTGTGATAGGTGGTTCGTTC 59.009 52.381 0.00 0.00 0.00 3.95
3453 3600 3.713288 CACCGATGGTATACAATGACGT 58.287 45.455 5.01 0.00 32.11 4.34
3495 3642 4.484236 CTTGACTGTTTGTTGCTGTGAAA 58.516 39.130 0.00 0.00 0.00 2.69
3515 3662 2.976494 CTTGTCCGTGGGGTTGCCTT 62.976 60.000 0.00 0.00 33.83 4.35
3528 3675 2.672760 GCTCTTCTTCTCCGTCTTGTCC 60.673 54.545 0.00 0.00 0.00 4.02
3531 3678 1.734047 CGGCTCTTCTTCTCCGTCTTG 60.734 57.143 0.00 0.00 37.33 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.