Multiple sequence alignment - TraesCS4D01G102400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G102400 chr4D 100.000 9020 0 0 510 9529 81323114 81332133 0.000000e+00 16657.0
1 TraesCS4D01G102400 chr4D 92.212 1040 55 9 5300 6324 23233995 23235023 0.000000e+00 1448.0
2 TraesCS4D01G102400 chr4D 90.263 1027 69 18 5300 6312 477227248 477228257 0.000000e+00 1314.0
3 TraesCS4D01G102400 chr4D 100.000 279 0 0 1 279 81322605 81322883 5.100000e-142 516.0
4 TraesCS4D01G102400 chr4D 90.584 308 26 3 2668 2973 118579969 118579663 1.150000e-108 405.0
5 TraesCS4D01G102400 chr4D 79.725 291 55 3 2687 2976 479377072 479376785 3.490000e-49 207.0
6 TraesCS4D01G102400 chr4D 91.935 124 6 3 3 123 306402458 306402580 4.580000e-38 171.0
7 TraesCS4D01G102400 chr4D 91.736 121 9 1 3 122 81317420 81317540 5.920000e-37 167.0
8 TraesCS4D01G102400 chr4D 91.129 124 8 3 6 126 464295185 464295062 2.130000e-36 165.0
9 TraesCS4D01G102400 chr4A 93.333 2190 73 18 510 2672 490770180 490772323 0.000000e+00 3168.0
10 TraesCS4D01G102400 chr4A 93.863 1385 56 14 7154 8518 490774777 490776152 0.000000e+00 2060.0
11 TraesCS4D01G102400 chr4A 89.430 1088 94 13 3292 4366 490772608 490773687 0.000000e+00 1352.0
12 TraesCS4D01G102400 chr4A 88.526 1011 92 12 8522 9529 208813977 208812988 0.000000e+00 1203.0
13 TraesCS4D01G102400 chr4A 85.079 382 50 4 6338 6712 490773682 490774063 5.400000e-102 383.0
14 TraesCS4D01G102400 chr4A 83.810 420 27 11 6775 7156 490774065 490774481 2.530000e-95 361.0
15 TraesCS4D01G102400 chr4A 88.660 291 19 6 2978 3254 490772316 490772606 9.160000e-90 342.0
16 TraesCS4D01G102400 chr4A 97.452 157 4 0 123 279 490769971 490770127 1.580000e-67 268.0
17 TraesCS4D01G102400 chr4B 96.881 1635 40 6 6891 8514 114444638 114446272 0.000000e+00 2726.0
18 TraesCS4D01G102400 chr4B 96.312 1166 32 3 564 1729 114439940 114441094 0.000000e+00 1905.0
19 TraesCS4D01G102400 chr4B 95.356 1012 32 6 1158 2166 114441087 114442086 0.000000e+00 1594.0
20 TraesCS4D01G102400 chr4B 94.531 1024 34 6 8506 9529 145518482 145517481 0.000000e+00 1561.0
21 TraesCS4D01G102400 chr4B 93.781 611 31 4 2978 3584 114442607 114443214 0.000000e+00 911.0
22 TraesCS4D01G102400 chr4B 92.531 482 31 3 3570 4050 114443232 114443709 0.000000e+00 686.0
23 TraesCS4D01G102400 chr4B 90.458 524 44 5 6338 6858 114444113 114444633 0.000000e+00 686.0
24 TraesCS4D01G102400 chr4B 89.269 438 23 8 2243 2672 114442193 114442614 2.360000e-145 527.0
25 TraesCS4D01G102400 chr4B 94.771 306 13 3 2668 2971 10787037 10787341 3.110000e-129 473.0
26 TraesCS4D01G102400 chr4B 98.726 157 2 0 123 279 114439646 114439802 7.290000e-71 279.0
27 TraesCS4D01G102400 chr4B 81.714 350 30 11 4040 4366 114443780 114444118 2.640000e-65 261.0
28 TraesCS4D01G102400 chr4B 92.562 121 8 1 3 122 554193033 554193153 1.270000e-38 172.0
29 TraesCS4D01G102400 chr4B 98.039 51 1 0 510 560 114439853 114439903 1.320000e-13 89.8
30 TraesCS4D01G102400 chr4B 100.000 46 0 0 2200 2245 114442055 114442100 1.710000e-12 86.1
31 TraesCS4D01G102400 chr1D 89.875 2005 119 39 4366 6324 259771500 259769534 0.000000e+00 2501.0
32 TraesCS4D01G102400 chr1D 95.564 1037 31 7 5300 6324 425565690 425566723 0.000000e+00 1646.0
33 TraesCS4D01G102400 chr1D 94.976 1035 34 8 5300 6322 29804890 29803862 0.000000e+00 1607.0
34 TraesCS4D01G102400 chr1D 96.999 933 24 3 4366 5296 334053182 334054112 0.000000e+00 1565.0
35 TraesCS4D01G102400 chr1D 96.684 935 22 3 4366 5296 425564727 425565656 0.000000e+00 1546.0
36 TraesCS4D01G102400 chr1D 86.806 288 36 2 2687 2973 413773021 413772735 4.290000e-83 320.0
37 TraesCS4D01G102400 chr6D 95.761 1038 30 6 5300 6324 10675450 10676486 0.000000e+00 1661.0
38 TraesCS4D01G102400 chr6D 97.118 937 16 3 4362 5296 10674489 10675416 0.000000e+00 1570.0
39 TraesCS4D01G102400 chr6D 90.816 294 24 3 2681 2972 441787194 441786902 3.230000e-104 390.0
40 TraesCS4D01G102400 chr6D 86.000 300 40 2 2675 2973 380719079 380718781 4.290000e-83 320.0
41 TraesCS4D01G102400 chr6D 79.348 276 49 7 2699 2971 471358902 471359172 4.540000e-43 187.0
42 TraesCS4D01G102400 chr6D 78.327 263 55 2 2711 2973 94054990 94054730 1.650000e-37 169.0
43 TraesCS4D01G102400 chr6D 91.200 125 10 1 3 126 194181379 194181255 1.650000e-37 169.0
44 TraesCS4D01G102400 chr6D 91.803 122 8 2 3 122 449772277 449772398 1.650000e-37 169.0
45 TraesCS4D01G102400 chr6D 91.200 125 7 3 3 124 38203952 38203829 5.920000e-37 167.0
46 TraesCS4D01G102400 chr6D 91.129 124 9 2 3 124 46761338 46761461 5.920000e-37 167.0
47 TraesCS4D01G102400 chr6D 91.667 120 10 0 3 122 235783307 235783426 5.920000e-37 167.0
48 TraesCS4D01G102400 chr6D 90.984 122 9 2 3 122 46759140 46759261 7.660000e-36 163.0
49 TraesCS4D01G102400 chr6D 91.057 123 7 3 3 122 97857239 97857360 7.660000e-36 163.0
50 TraesCS4D01G102400 chr6D 91.057 123 7 3 3 122 427644922 427645043 7.660000e-36 163.0
51 TraesCS4D01G102400 chr3B 95.965 1016 37 2 8514 9529 466388572 466387561 0.000000e+00 1646.0
52 TraesCS4D01G102400 chr3B 94.805 308 14 2 2668 2973 543721191 543721498 6.690000e-131 479.0
53 TraesCS4D01G102400 chr3B 93.930 313 15 4 2668 2979 661540784 661540475 4.030000e-128 470.0
54 TraesCS4D01G102400 chr3B 93.038 316 17 5 2668 2981 513941031 513940719 3.140000e-124 457.0
55 TraesCS4D01G102400 chr3B 93.443 122 5 2 3 122 809333889 809334009 2.730000e-40 178.0
56 TraesCS4D01G102400 chr1B 95.597 1022 31 6 8509 9529 666942710 666941702 0.000000e+00 1626.0
57 TraesCS4D01G102400 chr1B 94.671 1032 31 8 8499 9529 289306100 289305092 0.000000e+00 1580.0
58 TraesCS4D01G102400 chr1B 94.481 308 14 3 2668 2973 100307237 100306931 1.120000e-128 472.0
59 TraesCS4D01G102400 chr1B 94.371 302 16 1 2674 2974 266112121 266111820 6.740000e-126 462.0
60 TraesCS4D01G102400 chr1B 93.115 305 19 2 2668 2971 468109442 468109139 6.790000e-121 446.0
61 TraesCS4D01G102400 chr1B 91.473 129 7 4 3 128 646888986 646888859 3.540000e-39 174.0
62 TraesCS4D01G102400 chr5B 95.149 1010 31 4 8520 9529 361487516 361488507 0.000000e+00 1578.0
63 TraesCS4D01G102400 chr5B 88.731 772 76 7 8520 9290 439432456 439431695 0.000000e+00 933.0
64 TraesCS4D01G102400 chr2D 97.005 935 24 2 4366 5296 563965799 563966733 0.000000e+00 1568.0
65 TraesCS4D01G102400 chr2D 96.150 935 34 1 4364 5296 525939863 525938929 0.000000e+00 1526.0
66 TraesCS4D01G102400 chr2D 95.752 306 12 1 2668 2972 111160643 111160338 8.600000e-135 492.0
67 TraesCS4D01G102400 chr2D 92.562 121 8 1 3 122 624788834 624788954 1.270000e-38 172.0
68 TraesCS4D01G102400 chr7D 96.802 938 26 2 4363 5296 630612480 630613417 0.000000e+00 1563.0
69 TraesCS4D01G102400 chr7D 91.309 1047 30 17 5300 6324 630613451 630614458 0.000000e+00 1373.0
70 TraesCS4D01G102400 chr7D 93.791 306 18 1 2668 2972 37924222 37923917 8.720000e-125 459.0
71 TraesCS4D01G102400 chr7D 92.105 304 22 2 2668 2970 141231183 141231485 2.460000e-115 427.0
72 TraesCS4D01G102400 chr7D 85.948 306 40 3 2675 2978 227298350 227298046 3.320000e-84 324.0
73 TraesCS4D01G102400 chr3D 96.471 935 24 3 4364 5296 117515414 117516341 0.000000e+00 1535.0
74 TraesCS4D01G102400 chr3D 93.514 1033 44 7 5300 6311 152559401 152560431 0.000000e+00 1515.0
75 TraesCS4D01G102400 chr3D 96.043 935 27 4 4364 5296 152558441 152559367 0.000000e+00 1513.0
76 TraesCS4D01G102400 chr3D 90.383 1019 74 13 8519 9529 404560915 404559913 0.000000e+00 1317.0
77 TraesCS4D01G102400 chr1A 94.257 1010 37 3 8520 9529 375615234 375614246 0.000000e+00 1524.0
78 TraesCS4D01G102400 chr1A 95.940 936 35 2 4364 5296 10952703 10951768 0.000000e+00 1515.0
79 TraesCS4D01G102400 chr1A 92.780 1025 57 12 5302 6318 10951732 10950717 0.000000e+00 1467.0
80 TraesCS4D01G102400 chr1A 94.020 301 17 1 2674 2973 491992064 491991764 1.130000e-123 455.0
81 TraesCS4D01G102400 chr1A 86.594 276 35 2 2699 2973 396281059 396280785 4.320000e-78 303.0
82 TraesCS4D01G102400 chr2B 93.939 1023 33 10 8508 9529 410189612 410188618 0.000000e+00 1519.0
83 TraesCS4D01G102400 chr2B 94.426 305 16 1 2668 2971 592808519 592808823 1.450000e-127 468.0
84 TraesCS4D01G102400 chr2A 93.189 1013 44 13 5300 6290 672523504 672522495 0.000000e+00 1465.0
85 TraesCS4D01G102400 chr6A 91.908 1038 58 14 5300 6318 605159140 605160170 0.000000e+00 1428.0
86 TraesCS4D01G102400 chr6A 89.860 286 26 3 2672 2957 427608289 427608571 1.960000e-96 364.0
87 TraesCS4D01G102400 chr6A 92.562 121 7 2 3 122 100671081 100671200 1.270000e-38 172.0
88 TraesCS4D01G102400 chr6A 92.562 121 8 1 3 122 613600243 613600363 1.270000e-38 172.0
89 TraesCS4D01G102400 chr6A 90.698 129 10 2 3 129 613602549 613602677 4.580000e-38 171.0
90 TraesCS4D01G102400 chr6A 100.000 28 0 0 6316 6343 579823084 579823111 1.700000e-02 52.8
91 TraesCS4D01G102400 chr6B 87.047 772 88 9 8520 9290 64112336 64111576 0.000000e+00 861.0
92 TraesCS4D01G102400 chr6B 94.249 313 15 3 2668 2978 702262289 702261978 8.660000e-130 475.0
93 TraesCS4D01G102400 chr6B 94.444 306 15 2 2668 2972 184810755 184811059 4.030000e-128 470.0
94 TraesCS4D01G102400 chr7B 95.130 308 12 3 2668 2973 650132637 650132943 5.170000e-132 483.0
95 TraesCS4D01G102400 chr7B 97.576 165 3 1 9365 9529 439934346 439934183 2.030000e-71 281.0
96 TraesCS4D01G102400 chr7B 97.576 165 3 1 9365 9529 439959089 439958926 2.030000e-71 281.0
97 TraesCS4D01G102400 chr7B 92.562 121 8 1 3 122 287927770 287927890 1.270000e-38 172.0
98 TraesCS4D01G102400 chrUn 94.949 297 13 2 2668 2963 423674460 423674165 1.870000e-126 464.0
99 TraesCS4D01G102400 chrUn 98.182 165 2 1 9365 9529 42464478 42464641 4.350000e-73 287.0
100 TraesCS4D01G102400 chrUn 80.756 291 52 3 2682 2972 193283792 193284078 3.460000e-54 224.0
101 TraesCS4D01G102400 chrUn 80.756 291 52 3 2682 2972 386640992 386641278 3.460000e-54 224.0
102 TraesCS4D01G102400 chrUn 80.769 286 51 3 2687 2972 364635226 364635507 4.480000e-53 220.0
103 TraesCS4D01G102400 chrUn 80.412 291 53 3 2682 2972 357519012 357519298 1.610000e-52 219.0
104 TraesCS4D01G102400 chrUn 79.452 292 55 5 2684 2972 94904833 94905122 1.620000e-47 202.0
105 TraesCS4D01G102400 chrUn 90.698 129 8 3 3 128 310745355 310745228 1.650000e-37 169.0
106 TraesCS4D01G102400 chrUn 91.129 124 6 4 3 122 47640829 47640707 7.660000e-36 163.0
107 TraesCS4D01G102400 chrUn 90.400 125 8 3 1 122 97845084 97845207 2.750000e-35 161.0
108 TraesCS4D01G102400 chrUn 90.909 121 10 1 3 122 305009860 305009740 2.750000e-35 161.0
109 TraesCS4D01G102400 chrUn 90.909 121 10 1 3 122 333427238 333427358 2.750000e-35 161.0
110 TraesCS4D01G102400 chrUn 89.683 126 11 2 3 126 425021296 425021421 9.900000e-35 159.0
111 TraesCS4D01G102400 chrUn 90.323 124 7 4 3 122 47644457 47644335 3.560000e-34 158.0
112 TraesCS4D01G102400 chrUn 92.793 111 5 3 14 122 67916270 67916161 3.560000e-34 158.0
113 TraesCS4D01G102400 chrUn 90.244 123 8 3 3 122 307435557 307435436 3.560000e-34 158.0
114 TraesCS4D01G102400 chrUn 89.683 126 9 4 1 122 311283660 311283785 3.560000e-34 158.0
115 TraesCS4D01G102400 chrUn 90.244 123 8 3 3 122 358487859 358487980 3.560000e-34 158.0
116 TraesCS4D01G102400 chrUn 77.338 278 53 6 2702 2973 108793737 108794010 1.280000e-33 156.0
117 TraesCS4D01G102400 chrUn 86.429 140 15 3 3 139 353000275 353000137 5.960000e-32 150.0
118 TraesCS4D01G102400 chrUn 86.429 140 15 3 3 139 419703397 419703535 5.960000e-32 150.0
119 TraesCS4D01G102400 chrUn 86.429 140 15 3 3 139 475122433 475122571 5.960000e-32 150.0
120 TraesCS4D01G102400 chrUn 90.769 65 3 3 2911 2974 16733244 16733306 6.130000e-12 84.2
121 TraesCS4D01G102400 chrUn 92.727 55 1 3 2925 2976 87194453 87194507 1.030000e-09 76.8
122 TraesCS4D01G102400 chr7A 93.811 307 18 1 2668 2973 119772856 119772550 2.420000e-125 460.0
123 TraesCS4D01G102400 chr5D 90.554 307 27 2 2668 2972 430508193 430508499 1.150000e-108 405.0
124 TraesCS4D01G102400 chr5D 81.034 290 50 4 2687 2973 34871598 34871311 9.630000e-55 226.0
125 TraesCS4D01G102400 chr5D 80.887 293 51 4 2684 2973 397004103 397004393 9.630000e-55 226.0
126 TraesCS4D01G102400 chr5D 81.034 290 50 4 2687 2973 484011972 484011685 9.630000e-55 226.0
127 TraesCS4D01G102400 chr5D 92.500 120 9 0 3 122 41837318 41837199 1.270000e-38 172.0
128 TraesCS4D01G102400 chr5D 91.803 122 8 2 3 122 188816292 188816171 1.650000e-37 169.0
129 TraesCS4D01G102400 chr3A 92.800 125 6 3 3 125 482692190 482692313 2.730000e-40 178.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G102400 chr4D 81322605 81332133 9528 False 8586.500000 16657 100.000000 1 9529 2 chr4D.!!$F5 9528
1 TraesCS4D01G102400 chr4D 23233995 23235023 1028 False 1448.000000 1448 92.212000 5300 6324 1 chr4D.!!$F1 1024
2 TraesCS4D01G102400 chr4D 477227248 477228257 1009 False 1314.000000 1314 90.263000 5300 6312 1 chr4D.!!$F4 1012
3 TraesCS4D01G102400 chr4A 208812988 208813977 989 True 1203.000000 1203 88.526000 8522 9529 1 chr4A.!!$R1 1007
4 TraesCS4D01G102400 chr4A 490769971 490776152 6181 False 1133.428571 3168 90.232429 123 8518 7 chr4A.!!$F1 8395
5 TraesCS4D01G102400 chr4B 145517481 145518482 1001 True 1561.000000 1561 94.531000 8506 9529 1 chr4B.!!$R1 1023
6 TraesCS4D01G102400 chr4B 114439646 114446272 6626 False 886.445455 2726 93.915182 123 8514 11 chr4B.!!$F3 8391
7 TraesCS4D01G102400 chr1D 259769534 259771500 1966 True 2501.000000 2501 89.875000 4366 6324 1 chr1D.!!$R2 1958
8 TraesCS4D01G102400 chr1D 29803862 29804890 1028 True 1607.000000 1607 94.976000 5300 6322 1 chr1D.!!$R1 1022
9 TraesCS4D01G102400 chr1D 425564727 425566723 1996 False 1596.000000 1646 96.124000 4366 6324 2 chr1D.!!$F2 1958
10 TraesCS4D01G102400 chr1D 334053182 334054112 930 False 1565.000000 1565 96.999000 4366 5296 1 chr1D.!!$F1 930
11 TraesCS4D01G102400 chr6D 10674489 10676486 1997 False 1615.500000 1661 96.439500 4362 6324 2 chr6D.!!$F6 1962
12 TraesCS4D01G102400 chr3B 466387561 466388572 1011 True 1646.000000 1646 95.965000 8514 9529 1 chr3B.!!$R1 1015
13 TraesCS4D01G102400 chr1B 666941702 666942710 1008 True 1626.000000 1626 95.597000 8509 9529 1 chr1B.!!$R6 1020
14 TraesCS4D01G102400 chr1B 289305092 289306100 1008 True 1580.000000 1580 94.671000 8499 9529 1 chr1B.!!$R3 1030
15 TraesCS4D01G102400 chr5B 361487516 361488507 991 False 1578.000000 1578 95.149000 8520 9529 1 chr5B.!!$F1 1009
16 TraesCS4D01G102400 chr5B 439431695 439432456 761 True 933.000000 933 88.731000 8520 9290 1 chr5B.!!$R1 770
17 TraesCS4D01G102400 chr2D 563965799 563966733 934 False 1568.000000 1568 97.005000 4366 5296 1 chr2D.!!$F1 930
18 TraesCS4D01G102400 chr2D 525938929 525939863 934 True 1526.000000 1526 96.150000 4364 5296 1 chr2D.!!$R2 932
19 TraesCS4D01G102400 chr7D 630612480 630614458 1978 False 1468.000000 1563 94.055500 4363 6324 2 chr7D.!!$F2 1961
20 TraesCS4D01G102400 chr3D 117515414 117516341 927 False 1535.000000 1535 96.471000 4364 5296 1 chr3D.!!$F1 932
21 TraesCS4D01G102400 chr3D 152558441 152560431 1990 False 1514.000000 1515 94.778500 4364 6311 2 chr3D.!!$F2 1947
22 TraesCS4D01G102400 chr3D 404559913 404560915 1002 True 1317.000000 1317 90.383000 8519 9529 1 chr3D.!!$R1 1010
23 TraesCS4D01G102400 chr1A 375614246 375615234 988 True 1524.000000 1524 94.257000 8520 9529 1 chr1A.!!$R1 1009
24 TraesCS4D01G102400 chr1A 10950717 10952703 1986 True 1491.000000 1515 94.360000 4364 6318 2 chr1A.!!$R4 1954
25 TraesCS4D01G102400 chr2B 410188618 410189612 994 True 1519.000000 1519 93.939000 8508 9529 1 chr2B.!!$R1 1021
26 TraesCS4D01G102400 chr2A 672522495 672523504 1009 True 1465.000000 1465 93.189000 5300 6290 1 chr2A.!!$R1 990
27 TraesCS4D01G102400 chr6A 605159140 605160170 1030 False 1428.000000 1428 91.908000 5300 6318 1 chr6A.!!$F4 1018
28 TraesCS4D01G102400 chr6B 64111576 64112336 760 True 861.000000 861 87.047000 8520 9290 1 chr6B.!!$R1 770

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
66 67 0.033504 ACAAATCTCGGTGTCGTGCT 59.966 50.000 0.00 0.0 37.69 4.40 F
67 68 0.716108 CAAATCTCGGTGTCGTGCTC 59.284 55.000 0.00 0.0 37.69 4.26 F
74 75 0.731514 CGGTGTCGTGCTCGTGTAAT 60.732 55.000 8.17 0.0 38.33 1.89 F
76 77 1.126113 GGTGTCGTGCTCGTGTAATTG 59.874 52.381 8.17 0.0 38.33 2.32 F
1945 2546 1.515954 CGTCCACGTAGCCAATCCT 59.484 57.895 0.00 0.0 34.11 3.24 F
2822 3531 0.032515 TCCATCTCTACCGAGGCCAA 60.033 55.000 5.01 0.0 37.86 4.52 F
2823 3532 0.105039 CCATCTCTACCGAGGCCAAC 59.895 60.000 5.01 0.0 37.86 3.77 F
2824 3533 0.105039 CATCTCTACCGAGGCCAACC 59.895 60.000 5.01 0.0 37.86 3.77 F
3124 3842 0.176680 CGGTCCCTCTCAACATGGAG 59.823 60.000 0.00 0.0 36.21 3.86 F
3765 4525 0.251297 CCCTGTCCCTCAATGTTGCA 60.251 55.000 0.00 0.0 0.00 4.08 F
3949 4710 0.613777 CCCGAGGCTAGTTCCAAAGT 59.386 55.000 0.00 0.0 0.00 2.66 F
5302 6186 1.135199 GCATGCCAAATCCAGACAGTG 60.135 52.381 6.36 0.0 0.00 3.66 F
5773 6691 0.030638 CTCCGCAAAATAATGCCCGG 59.969 55.000 0.00 0.0 43.47 5.73 F
6375 7411 0.248377 GCTTTCATGCCATCACGAGC 60.248 55.000 0.00 0.0 0.00 5.03 F
6572 7608 0.466372 GCTACTTTCCCCTCATGGCC 60.466 60.000 0.00 0.0 0.00 5.36 F
8355 9763 1.181098 CCTGGAGTTTGCCACCAAGG 61.181 60.000 0.00 0.0 41.84 3.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1447 2048 0.738975 CCATCTTCGTCGTCCTGCTA 59.261 55.000 0.00 0.00 0.00 3.49 R
2056 2659 4.545823 TCCAAACTCAAAAACACTAGCG 57.454 40.909 0.00 0.00 0.00 4.26 R
2088 2691 7.199541 AGCTTGATAACATGTAAGCATCATC 57.800 36.000 25.39 14.22 45.90 2.92 R
2170 2773 4.378774 TGGGAATTCATGTTTGCAACTTG 58.621 39.130 7.93 3.79 37.76 3.16 R
3124 3842 0.107654 AGCGAGGCATTAAGACCACC 60.108 55.000 0.00 0.00 0.00 4.61 R
3737 4497 0.612174 GAGGGACAGGGGAAAAAGGC 60.612 60.000 0.00 0.00 0.00 4.35 R
4091 4938 0.757561 TCCTGGGTCTGTTGTCGTGA 60.758 55.000 0.00 0.00 0.00 4.35 R
4120 4968 0.994247 TGAATCCCTGCATGGAGTGT 59.006 50.000 15.93 3.66 37.96 3.55 R
4230 5078 1.491670 GATGATCACATCGTGACCGG 58.508 55.000 0.00 0.00 45.65 5.28 R
5331 6247 0.609662 ATTGTCCAAAGGCATGGCAC 59.390 50.000 22.64 10.78 40.46 5.01 R
5771 6689 1.529226 TGCCCACAACAGATTTACCG 58.471 50.000 0.00 0.00 0.00 4.02 R
7027 8116 0.381801 CAACAGGTGGAGTGCACAAC 59.618 55.000 21.04 13.75 0.00 3.32 R
7801 9201 1.291184 CGTTCATGAGCTTGGCGACA 61.291 55.000 8.01 0.00 39.83 4.35 R
8331 9739 0.960861 GTGGCAAACTCCAGGTAGCC 60.961 60.000 0.00 0.00 44.45 3.93 R
8477 9886 1.065551 GAAGTTAATGGGCATGACCGC 59.934 52.381 14.43 0.18 40.62 5.68 R
9159 10575 2.238395 CCCTTCTCCCTCTCCTTTCTTG 59.762 54.545 0.00 0.00 0.00 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 4.256180 GCCATAGTGAGGCCCGGG 62.256 72.222 19.09 19.09 46.50 5.73
19 20 3.560251 CCATAGTGAGGCCCGGGG 61.560 72.222 25.28 9.31 0.00 5.73
20 21 2.445845 CATAGTGAGGCCCGGGGA 60.446 66.667 25.28 0.00 0.00 4.81
21 22 1.843376 CATAGTGAGGCCCGGGGAT 60.843 63.158 25.28 3.59 0.00 3.85
22 23 1.843376 ATAGTGAGGCCCGGGGATG 60.843 63.158 25.28 0.00 0.00 3.51
23 24 2.621672 ATAGTGAGGCCCGGGGATGT 62.622 60.000 25.28 0.00 0.00 3.06
24 25 1.951923 TAGTGAGGCCCGGGGATGTA 61.952 60.000 25.28 0.00 0.00 2.29
25 26 2.445845 TGAGGCCCGGGGATGTAG 60.446 66.667 25.28 0.00 0.00 2.74
26 27 3.942439 GAGGCCCGGGGATGTAGC 61.942 72.222 25.28 5.15 0.00 3.58
29 30 3.570212 GCCCGGGGATGTAGCCAT 61.570 66.667 25.28 0.00 0.00 4.40
30 31 2.221299 GCCCGGGGATGTAGCCATA 61.221 63.158 25.28 0.00 0.00 2.74
31 32 1.562672 GCCCGGGGATGTAGCCATAT 61.563 60.000 25.28 0.00 0.00 1.78
32 33 0.541863 CCCGGGGATGTAGCCATATC 59.458 60.000 14.71 0.00 0.00 1.63
33 34 0.175760 CCGGGGATGTAGCCATATCG 59.824 60.000 0.00 0.00 0.00 2.92
34 35 0.175760 CGGGGATGTAGCCATATCGG 59.824 60.000 0.00 0.00 38.11 4.18
35 36 1.276622 GGGGATGTAGCCATATCGGT 58.723 55.000 0.00 0.00 36.97 4.69
36 37 1.066143 GGGGATGTAGCCATATCGGTG 60.066 57.143 0.00 0.00 36.97 4.94
37 38 1.899814 GGGATGTAGCCATATCGGTGA 59.100 52.381 0.00 0.00 36.97 4.02
38 39 2.301870 GGGATGTAGCCATATCGGTGAA 59.698 50.000 0.00 0.00 36.97 3.18
39 40 3.326747 GGATGTAGCCATATCGGTGAAC 58.673 50.000 0.00 0.00 36.97 3.18
40 41 2.902705 TGTAGCCATATCGGTGAACC 57.097 50.000 0.00 0.00 36.97 3.62
41 42 2.394632 TGTAGCCATATCGGTGAACCT 58.605 47.619 0.00 0.00 36.97 3.50
42 43 2.364324 TGTAGCCATATCGGTGAACCTC 59.636 50.000 0.00 0.00 36.97 3.85
43 44 0.389391 AGCCATATCGGTGAACCTCG 59.611 55.000 0.00 0.00 36.97 4.63
44 45 0.104304 GCCATATCGGTGAACCTCGT 59.896 55.000 0.00 0.00 36.97 4.18
45 46 1.472728 GCCATATCGGTGAACCTCGTT 60.473 52.381 0.00 0.00 36.97 3.85
46 47 2.223876 GCCATATCGGTGAACCTCGTTA 60.224 50.000 0.00 0.00 36.97 3.18
47 48 3.738899 GCCATATCGGTGAACCTCGTTAA 60.739 47.826 0.00 0.00 36.97 2.01
48 49 3.800506 CCATATCGGTGAACCTCGTTAAC 59.199 47.826 0.00 0.00 0.00 2.01
49 50 4.426416 CATATCGGTGAACCTCGTTAACA 58.574 43.478 6.39 0.00 28.88 2.41
50 51 2.886862 TCGGTGAACCTCGTTAACAA 57.113 45.000 6.39 0.00 28.88 2.83
51 52 3.176552 TCGGTGAACCTCGTTAACAAA 57.823 42.857 6.39 0.00 28.88 2.83
52 53 3.731089 TCGGTGAACCTCGTTAACAAAT 58.269 40.909 6.39 0.00 28.88 2.32
53 54 3.742369 TCGGTGAACCTCGTTAACAAATC 59.258 43.478 6.39 0.00 28.88 2.17
54 55 3.744426 CGGTGAACCTCGTTAACAAATCT 59.256 43.478 6.39 0.00 28.88 2.40
55 56 4.143179 CGGTGAACCTCGTTAACAAATCTC 60.143 45.833 6.39 0.00 28.88 2.75
56 57 4.143179 GGTGAACCTCGTTAACAAATCTCG 60.143 45.833 6.39 0.00 28.88 4.04
57 58 3.991773 TGAACCTCGTTAACAAATCTCGG 59.008 43.478 6.39 0.00 0.00 4.63
58 59 3.672767 ACCTCGTTAACAAATCTCGGT 57.327 42.857 6.39 0.00 0.00 4.69
59 60 3.323243 ACCTCGTTAACAAATCTCGGTG 58.677 45.455 6.39 0.00 0.00 4.94
60 61 3.243975 ACCTCGTTAACAAATCTCGGTGT 60.244 43.478 6.39 0.00 0.00 4.16
61 62 3.367025 CCTCGTTAACAAATCTCGGTGTC 59.633 47.826 6.39 0.00 0.00 3.67
62 63 2.981805 TCGTTAACAAATCTCGGTGTCG 59.018 45.455 6.39 0.00 37.82 4.35
63 64 2.727798 CGTTAACAAATCTCGGTGTCGT 59.272 45.455 6.39 0.00 37.69 4.34
64 65 3.421312 CGTTAACAAATCTCGGTGTCGTG 60.421 47.826 6.39 0.00 37.69 4.35
65 66 0.865769 AACAAATCTCGGTGTCGTGC 59.134 50.000 0.00 0.00 37.69 5.34
66 67 0.033504 ACAAATCTCGGTGTCGTGCT 59.966 50.000 0.00 0.00 37.69 4.40
67 68 0.716108 CAAATCTCGGTGTCGTGCTC 59.284 55.000 0.00 0.00 37.69 4.26
68 69 0.732880 AAATCTCGGTGTCGTGCTCG 60.733 55.000 0.81 0.81 37.69 5.03
69 70 1.863662 AATCTCGGTGTCGTGCTCGT 61.864 55.000 8.17 0.00 38.33 4.18
70 71 2.529005 ATCTCGGTGTCGTGCTCGTG 62.529 60.000 8.17 0.00 38.33 4.35
71 72 3.538028 CTCGGTGTCGTGCTCGTGT 62.538 63.158 8.17 0.00 38.33 4.49
72 73 2.178892 CTCGGTGTCGTGCTCGTGTA 62.179 60.000 8.17 0.00 38.33 2.90
73 74 1.370778 CGGTGTCGTGCTCGTGTAA 60.371 57.895 8.17 0.00 38.33 2.41
74 75 0.731514 CGGTGTCGTGCTCGTGTAAT 60.732 55.000 8.17 0.00 38.33 1.89
75 76 1.425412 GGTGTCGTGCTCGTGTAATT 58.575 50.000 8.17 0.00 38.33 1.40
76 77 1.126113 GGTGTCGTGCTCGTGTAATTG 59.874 52.381 8.17 0.00 38.33 2.32
77 78 1.790623 GTGTCGTGCTCGTGTAATTGT 59.209 47.619 8.17 0.00 38.33 2.71
78 79 2.220133 GTGTCGTGCTCGTGTAATTGTT 59.780 45.455 8.17 0.00 38.33 2.83
79 80 2.867368 TGTCGTGCTCGTGTAATTGTTT 59.133 40.909 8.17 0.00 38.33 2.83
80 81 3.215244 GTCGTGCTCGTGTAATTGTTTG 58.785 45.455 8.17 0.00 38.33 2.93
81 82 2.222213 TCGTGCTCGTGTAATTGTTTGG 59.778 45.455 8.17 0.00 38.33 3.28
82 83 2.032377 CGTGCTCGTGTAATTGTTTGGT 60.032 45.455 0.00 0.00 0.00 3.67
83 84 3.551551 GTGCTCGTGTAATTGTTTGGTC 58.448 45.455 0.00 0.00 0.00 4.02
84 85 2.550606 TGCTCGTGTAATTGTTTGGTCC 59.449 45.455 0.00 0.00 0.00 4.46
85 86 2.550606 GCTCGTGTAATTGTTTGGTCCA 59.449 45.455 0.00 0.00 0.00 4.02
86 87 3.190535 GCTCGTGTAATTGTTTGGTCCAT 59.809 43.478 0.00 0.00 0.00 3.41
87 88 4.722194 CTCGTGTAATTGTTTGGTCCATG 58.278 43.478 0.00 0.00 0.00 3.66
88 89 3.504134 TCGTGTAATTGTTTGGTCCATGG 59.496 43.478 4.97 4.97 0.00 3.66
89 90 3.504134 CGTGTAATTGTTTGGTCCATGGA 59.496 43.478 11.44 11.44 0.00 3.41
90 91 4.157656 CGTGTAATTGTTTGGTCCATGGAT 59.842 41.667 19.62 0.18 0.00 3.41
91 92 5.410067 GTGTAATTGTTTGGTCCATGGATG 58.590 41.667 19.62 0.00 0.00 3.51
92 93 5.184864 GTGTAATTGTTTGGTCCATGGATGA 59.815 40.000 19.62 4.46 0.00 2.92
93 94 5.957168 TGTAATTGTTTGGTCCATGGATGAT 59.043 36.000 19.62 2.00 0.00 2.45
94 95 5.603170 AATTGTTTGGTCCATGGATGATC 57.397 39.130 19.62 4.42 0.00 2.92
95 96 3.017048 TGTTTGGTCCATGGATGATCC 57.983 47.619 19.62 14.89 36.96 3.36
105 106 1.793414 TGGATGATCCACGATGACCT 58.207 50.000 10.75 0.00 42.67 3.85
106 107 1.688735 TGGATGATCCACGATGACCTC 59.311 52.381 10.75 0.00 42.67 3.85
107 108 3.910314 TGGATGATCCACGATGACCTCG 61.910 54.545 10.75 0.00 42.67 4.63
120 121 6.692232 CGATGACCTCGGATTTATTCTAAC 57.308 41.667 0.00 0.00 43.82 2.34
121 122 6.213677 CGATGACCTCGGATTTATTCTAACA 58.786 40.000 0.00 0.00 43.82 2.41
137 138 7.944729 ATTCTAACACAAACCATCATAAGCT 57.055 32.000 0.00 0.00 0.00 3.74
617 651 3.117171 GCTCCAGCTGCACGACTG 61.117 66.667 8.66 0.00 38.21 3.51
645 679 7.504924 TCACGTAGGACATTGAAATTTCTTT 57.495 32.000 18.64 3.93 0.00 2.52
653 687 6.091305 GGACATTGAAATTTCTTTAAGCTGGC 59.909 38.462 18.64 4.19 0.00 4.85
966 1011 9.767228 AATTTATACACAAGTATATACACGCCA 57.233 29.630 15.18 0.00 41.51 5.69
1341 1942 6.512297 TCGATCAGCACTAATACTTTGCATA 58.488 36.000 0.00 0.00 38.81 3.14
1342 1943 6.420903 TCGATCAGCACTAATACTTTGCATAC 59.579 38.462 0.00 0.00 38.81 2.39
1343 1944 6.422100 CGATCAGCACTAATACTTTGCATACT 59.578 38.462 0.00 0.00 38.81 2.12
1344 1945 7.042456 CGATCAGCACTAATACTTTGCATACTT 60.042 37.037 0.00 0.00 38.81 2.24
1345 1946 7.921786 TCAGCACTAATACTTTGCATACTTT 57.078 32.000 0.00 0.00 38.81 2.66
1346 1947 7.751732 TCAGCACTAATACTTTGCATACTTTG 58.248 34.615 0.00 0.00 38.81 2.77
1362 1963 7.268199 CATACTTTGCATGTGGATCTAACAT 57.732 36.000 8.28 8.28 38.81 2.71
1420 2021 2.747446 GTGCGTGTGATGTTTAGGGAAT 59.253 45.455 0.00 0.00 0.00 3.01
1447 2048 2.045131 GGAGGACAGCTACGTCGGT 61.045 63.158 0.00 0.00 36.73 4.69
1945 2546 1.515954 CGTCCACGTAGCCAATCCT 59.484 57.895 0.00 0.00 34.11 3.24
2003 2606 1.595976 CGACCGAACATGTTGCGTTTT 60.596 47.619 17.58 6.08 0.00 2.43
2056 2659 7.778743 TTTTTGCGGTAATAACGTTCATTAC 57.221 32.000 20.57 20.57 37.88 1.89
2088 2691 7.168972 TGTTTTTGAGTTTGGAATATTCGCAAG 59.831 33.333 9.32 0.00 0.00 4.01
2346 3046 3.392285 TGTGCCATTGCTATCTATCACCT 59.608 43.478 0.00 0.00 38.71 4.00
2383 3083 1.084289 GTCCAGTAAATCCACGGTGC 58.916 55.000 1.68 0.00 0.00 5.01
2388 3088 1.899814 AGTAAATCCACGGTGCTCTCA 59.100 47.619 1.68 0.00 0.00 3.27
2412 3112 3.452627 GGTCAGAAGTCATACCAGTGGAT 59.547 47.826 18.40 1.91 32.04 3.41
2449 3154 5.585500 TCGACTAATTCCAACAGAAAACG 57.415 39.130 0.00 0.00 38.21 3.60
2452 3157 6.869913 TCGACTAATTCCAACAGAAAACGTAT 59.130 34.615 0.00 0.00 38.21 3.06
2470 3175 0.729116 ATCAATGCGCGTTTCCTCTG 59.271 50.000 13.26 0.61 0.00 3.35
2526 3234 2.223144 CGAAGCACGAGAAATTTGTCCA 59.777 45.455 9.55 0.00 45.77 4.02
2528 3236 4.406943 GAAGCACGAGAAATTTGTCCATC 58.593 43.478 9.55 0.00 0.00 3.51
2538 3246 0.948623 TTTGTCCATCGCCACACTCG 60.949 55.000 0.00 0.00 0.00 4.18
2616 3325 1.453379 GCCCTGCTGCATGATGAGT 60.453 57.895 1.31 0.00 0.00 3.41
2617 3326 1.035932 GCCCTGCTGCATGATGAGTT 61.036 55.000 1.31 0.00 0.00 3.01
2618 3327 1.748244 GCCCTGCTGCATGATGAGTTA 60.748 52.381 1.31 0.00 0.00 2.24
2619 3328 2.860009 CCCTGCTGCATGATGAGTTAT 58.140 47.619 1.31 0.00 0.00 1.89
2620 3329 2.812591 CCCTGCTGCATGATGAGTTATC 59.187 50.000 1.31 0.00 36.29 1.75
2621 3330 2.479275 CCTGCTGCATGATGAGTTATCG 59.521 50.000 1.31 0.00 38.71 2.92
2622 3331 1.869132 TGCTGCATGATGAGTTATCGC 59.131 47.619 0.00 0.00 38.71 4.58
2623 3332 1.196354 GCTGCATGATGAGTTATCGCC 59.804 52.381 0.00 0.00 38.71 5.54
2662 3371 1.271379 ACTTGGCTGATGCGGTTACTT 60.271 47.619 0.00 0.00 40.82 2.24
2663 3372 1.398390 CTTGGCTGATGCGGTTACTTC 59.602 52.381 0.00 0.00 40.82 3.01
2664 3373 0.613260 TGGCTGATGCGGTTACTTCT 59.387 50.000 0.00 0.00 40.82 2.85
2665 3374 1.009829 GGCTGATGCGGTTACTTCTG 58.990 55.000 0.00 0.00 40.82 3.02
2666 3375 1.676014 GGCTGATGCGGTTACTTCTGT 60.676 52.381 0.00 0.00 40.82 3.41
2667 3376 1.661112 GCTGATGCGGTTACTTCTGTC 59.339 52.381 0.00 0.00 0.00 3.51
2668 3377 2.930887 GCTGATGCGGTTACTTCTGTCA 60.931 50.000 0.00 0.00 0.00 3.58
2669 3378 3.325870 CTGATGCGGTTACTTCTGTCAA 58.674 45.455 0.00 0.00 0.00 3.18
2670 3379 3.325870 TGATGCGGTTACTTCTGTCAAG 58.674 45.455 0.00 0.00 0.00 3.02
2671 3380 1.508632 TGCGGTTACTTCTGTCAAGC 58.491 50.000 0.00 0.00 0.00 4.01
2672 3381 1.070134 TGCGGTTACTTCTGTCAAGCT 59.930 47.619 0.00 0.00 0.00 3.74
2673 3382 1.727335 GCGGTTACTTCTGTCAAGCTC 59.273 52.381 0.00 0.00 0.00 4.09
2674 3383 2.610727 GCGGTTACTTCTGTCAAGCTCT 60.611 50.000 0.00 0.00 0.00 4.09
2675 3384 2.989840 CGGTTACTTCTGTCAAGCTCTG 59.010 50.000 0.00 0.00 0.00 3.35
2676 3385 2.739379 GGTTACTTCTGTCAAGCTCTGC 59.261 50.000 0.00 0.00 0.00 4.26
2677 3386 2.354109 TACTTCTGTCAAGCTCTGCG 57.646 50.000 0.00 0.00 0.00 5.18
2678 3387 0.948141 ACTTCTGTCAAGCTCTGCGC 60.948 55.000 0.00 0.00 39.57 6.09
2687 3396 3.711348 GCTCTGCGCTGATGGTAC 58.289 61.111 17.78 2.04 35.14 3.34
2688 3397 2.233654 GCTCTGCGCTGATGGTACG 61.234 63.158 17.78 6.05 35.14 3.67
2692 3401 4.865761 GCGCTGATGGTACGCCGA 62.866 66.667 0.00 0.00 46.63 5.54
2693 3402 2.202690 CGCTGATGGTACGCCGAA 60.203 61.111 0.00 0.00 37.67 4.30
2694 3403 2.514013 CGCTGATGGTACGCCGAAC 61.514 63.158 0.00 0.00 37.67 3.95
2695 3404 2.171725 GCTGATGGTACGCCGAACC 61.172 63.158 0.00 0.00 37.67 3.62
2696 3405 1.876714 CTGATGGTACGCCGAACCG 60.877 63.158 0.00 0.00 40.08 4.44
2697 3406 3.259751 GATGGTACGCCGAACCGC 61.260 66.667 0.00 0.00 40.08 5.68
2698 3407 4.825252 ATGGTACGCCGAACCGCC 62.825 66.667 0.00 0.00 40.08 6.13
2701 3410 3.484547 GTACGCCGAACCGCCAAG 61.485 66.667 0.00 0.00 0.00 3.61
2706 3415 3.737172 CCGAACCGCCAAGCCAAG 61.737 66.667 0.00 0.00 0.00 3.61
2707 3416 3.737172 CGAACCGCCAAGCCAAGG 61.737 66.667 0.00 0.00 0.00 3.61
2714 3423 3.665971 CCAAGCCAAGGCCTCCCT 61.666 66.667 5.23 0.00 45.77 4.20
2715 3424 2.044551 CAAGCCAAGGCCTCCCTC 60.045 66.667 5.23 0.00 41.90 4.30
2716 3425 2.532715 AAGCCAAGGCCTCCCTCA 60.533 61.111 5.23 0.00 41.90 3.86
2717 3426 2.911926 AAGCCAAGGCCTCCCTCAC 61.912 63.158 5.23 0.00 41.90 3.51
2718 3427 3.334054 GCCAAGGCCTCCCTCACT 61.334 66.667 5.23 0.00 41.90 3.41
2719 3428 1.995626 GCCAAGGCCTCCCTCACTA 60.996 63.158 5.23 0.00 41.90 2.74
2720 3429 1.348775 GCCAAGGCCTCCCTCACTAT 61.349 60.000 5.23 0.00 41.90 2.12
2721 3430 0.471617 CCAAGGCCTCCCTCACTATG 59.528 60.000 5.23 0.00 41.90 2.23
2722 3431 0.179034 CAAGGCCTCCCTCACTATGC 60.179 60.000 5.23 0.00 41.90 3.14
2723 3432 0.327000 AAGGCCTCCCTCACTATGCT 60.327 55.000 5.23 0.00 41.90 3.79
2724 3433 0.762461 AGGCCTCCCTCACTATGCTC 60.762 60.000 0.00 0.00 36.46 4.26
2725 3434 1.365633 GCCTCCCTCACTATGCTCG 59.634 63.158 0.00 0.00 0.00 5.03
2726 3435 1.395826 GCCTCCCTCACTATGCTCGT 61.396 60.000 0.00 0.00 0.00 4.18
2727 3436 0.671251 CCTCCCTCACTATGCTCGTC 59.329 60.000 0.00 0.00 0.00 4.20
2728 3437 1.686355 CTCCCTCACTATGCTCGTCT 58.314 55.000 0.00 0.00 0.00 4.18
2729 3438 1.606668 CTCCCTCACTATGCTCGTCTC 59.393 57.143 0.00 0.00 0.00 3.36
2730 3439 1.064685 TCCCTCACTATGCTCGTCTCA 60.065 52.381 0.00 0.00 0.00 3.27
2731 3440 1.959985 CCCTCACTATGCTCGTCTCAT 59.040 52.381 0.00 0.00 0.00 2.90
2732 3441 2.288091 CCCTCACTATGCTCGTCTCATG 60.288 54.545 0.00 0.00 0.00 3.07
2733 3442 2.620585 CCTCACTATGCTCGTCTCATGA 59.379 50.000 0.00 0.00 0.00 3.07
2734 3443 3.067320 CCTCACTATGCTCGTCTCATGAA 59.933 47.826 0.00 0.00 0.00 2.57
2735 3444 4.033990 TCACTATGCTCGTCTCATGAAC 57.966 45.455 0.00 0.00 0.00 3.18
2736 3445 2.786027 CACTATGCTCGTCTCATGAACG 59.214 50.000 18.38 18.38 0.00 3.95
2737 3446 2.683362 ACTATGCTCGTCTCATGAACGA 59.317 45.455 22.69 22.69 0.00 3.85
2738 3447 2.879002 ATGCTCGTCTCATGAACGAT 57.121 45.000 23.67 12.96 35.28 3.73
2739 3448 2.654749 TGCTCGTCTCATGAACGATT 57.345 45.000 23.67 0.00 35.28 3.34
2740 3449 2.959516 TGCTCGTCTCATGAACGATTT 58.040 42.857 23.67 0.00 35.28 2.17
2741 3450 2.667969 TGCTCGTCTCATGAACGATTTG 59.332 45.455 23.67 16.90 35.28 2.32
2742 3451 2.923655 GCTCGTCTCATGAACGATTTGA 59.076 45.455 23.67 4.48 35.28 2.69
2743 3452 3.367932 GCTCGTCTCATGAACGATTTGAA 59.632 43.478 23.67 9.03 35.28 2.69
2744 3453 4.143115 GCTCGTCTCATGAACGATTTGAAA 60.143 41.667 23.67 8.54 35.28 2.69
2745 3454 5.446473 GCTCGTCTCATGAACGATTTGAAAT 60.446 40.000 23.67 0.00 35.28 2.17
2746 3455 6.480524 TCGTCTCATGAACGATTTGAAATT 57.519 33.333 21.28 0.00 0.00 1.82
2747 3456 7.589574 TCGTCTCATGAACGATTTGAAATTA 57.410 32.000 21.28 4.16 0.00 1.40
2748 3457 7.675478 TCGTCTCATGAACGATTTGAAATTAG 58.325 34.615 21.28 0.00 0.00 1.73
2749 3458 7.330946 TCGTCTCATGAACGATTTGAAATTAGT 59.669 33.333 21.28 0.00 0.00 2.24
2750 3459 7.423598 CGTCTCATGAACGATTTGAAATTAGTG 59.576 37.037 19.22 0.00 0.00 2.74
2751 3460 8.230486 GTCTCATGAACGATTTGAAATTAGTGT 58.770 33.333 0.00 0.00 0.00 3.55
2752 3461 9.430623 TCTCATGAACGATTTGAAATTAGTGTA 57.569 29.630 0.00 0.00 0.00 2.90
2756 3465 8.667987 TGAACGATTTGAAATTAGTGTAATGC 57.332 30.769 0.00 0.00 0.00 3.56
2757 3466 8.293157 TGAACGATTTGAAATTAGTGTAATGCA 58.707 29.630 0.00 0.00 0.00 3.96
2758 3467 9.123709 GAACGATTTGAAATTAGTGTAATGCAA 57.876 29.630 0.00 0.00 0.00 4.08
2759 3468 9.469807 AACGATTTGAAATTAGTGTAATGCAAA 57.530 25.926 0.00 0.00 37.50 3.68
2760 3469 9.469807 ACGATTTGAAATTAGTGTAATGCAAAA 57.530 25.926 0.00 0.00 37.09 2.44
2761 3470 9.941991 CGATTTGAAATTAGTGTAATGCAAAAG 57.058 29.630 0.00 0.00 37.09 2.27
2764 3473 9.593134 TTTGAAATTAGTGTAATGCAAAAGTGT 57.407 25.926 0.00 0.00 33.85 3.55
2765 3474 9.593134 TTGAAATTAGTGTAATGCAAAAGTGTT 57.407 25.926 0.00 0.00 0.00 3.32
2766 3475 9.593134 TGAAATTAGTGTAATGCAAAAGTGTTT 57.407 25.926 0.00 0.00 0.00 2.83
2770 3479 8.568732 TTAGTGTAATGCAAAAGTGTTTAAGC 57.431 30.769 0.00 0.00 0.00 3.09
2771 3480 6.568869 AGTGTAATGCAAAAGTGTTTAAGCA 58.431 32.000 0.00 0.00 37.91 3.91
2772 3481 7.209475 AGTGTAATGCAAAAGTGTTTAAGCAT 58.791 30.769 0.00 0.00 42.53 3.79
2773 3482 8.356657 AGTGTAATGCAAAAGTGTTTAAGCATA 58.643 29.630 10.72 0.00 40.99 3.14
2774 3483 8.973378 GTGTAATGCAAAAGTGTTTAAGCATAA 58.027 29.630 10.72 0.00 40.99 1.90
2775 3484 9.190858 TGTAATGCAAAAGTGTTTAAGCATAAG 57.809 29.630 10.72 0.00 40.99 1.73
2776 3485 9.405587 GTAATGCAAAAGTGTTTAAGCATAAGA 57.594 29.630 10.72 1.55 40.99 2.10
2777 3486 8.524870 AATGCAAAAGTGTTTAAGCATAAGAG 57.475 30.769 10.72 0.00 40.99 2.85
2778 3487 7.038154 TGCAAAAGTGTTTAAGCATAAGAGT 57.962 32.000 0.00 0.00 31.58 3.24
2779 3488 6.917477 TGCAAAAGTGTTTAAGCATAAGAGTG 59.083 34.615 0.00 0.00 31.58 3.51
2780 3489 6.129088 GCAAAAGTGTTTAAGCATAAGAGTGC 60.129 38.462 0.00 0.00 45.38 4.40
2787 3496 2.682893 GCATAAGAGTGCTCCACCG 58.317 57.895 0.00 0.00 41.82 4.94
2788 3497 1.432270 GCATAAGAGTGCTCCACCGC 61.432 60.000 0.00 0.00 41.82 5.68
2789 3498 0.811616 CATAAGAGTGCTCCACCGCC 60.812 60.000 0.00 0.00 34.49 6.13
2790 3499 1.264749 ATAAGAGTGCTCCACCGCCA 61.265 55.000 0.00 0.00 34.49 5.69
2791 3500 1.476845 TAAGAGTGCTCCACCGCCAA 61.477 55.000 0.00 0.00 34.49 4.52
2792 3501 2.045926 GAGTGCTCCACCGCCAAT 60.046 61.111 0.00 0.00 34.49 3.16
2793 3502 2.045926 AGTGCTCCACCGCCAATC 60.046 61.111 0.00 0.00 34.49 2.67
2794 3503 2.045926 GTGCTCCACCGCCAATCT 60.046 61.111 0.00 0.00 0.00 2.40
2795 3504 1.675641 GTGCTCCACCGCCAATCTT 60.676 57.895 0.00 0.00 0.00 2.40
2796 3505 1.675310 TGCTCCACCGCCAATCTTG 60.675 57.895 0.00 0.00 0.00 3.02
2797 3506 3.056313 GCTCCACCGCCAATCTTGC 62.056 63.158 0.00 0.00 0.00 4.01
2798 3507 1.377725 CTCCACCGCCAATCTTGCT 60.378 57.895 0.00 0.00 0.00 3.91
2799 3508 1.372087 CTCCACCGCCAATCTTGCTC 61.372 60.000 0.00 0.00 0.00 4.26
2800 3509 1.377725 CCACCGCCAATCTTGCTCT 60.378 57.895 0.00 0.00 0.00 4.09
2801 3510 1.372087 CCACCGCCAATCTTGCTCTC 61.372 60.000 0.00 0.00 0.00 3.20
2802 3511 1.078143 ACCGCCAATCTTGCTCTCC 60.078 57.895 0.00 0.00 0.00 3.71
2803 3512 1.222936 CCGCCAATCTTGCTCTCCT 59.777 57.895 0.00 0.00 0.00 3.69
2804 3513 0.813210 CCGCCAATCTTGCTCTCCTC 60.813 60.000 0.00 0.00 0.00 3.71
2805 3514 0.813210 CGCCAATCTTGCTCTCCTCC 60.813 60.000 0.00 0.00 0.00 4.30
2806 3515 0.254178 GCCAATCTTGCTCTCCTCCA 59.746 55.000 0.00 0.00 0.00 3.86
2807 3516 1.133853 GCCAATCTTGCTCTCCTCCAT 60.134 52.381 0.00 0.00 0.00 3.41
2808 3517 2.848691 CCAATCTTGCTCTCCTCCATC 58.151 52.381 0.00 0.00 0.00 3.51
2809 3518 2.438763 CCAATCTTGCTCTCCTCCATCT 59.561 50.000 0.00 0.00 0.00 2.90
2810 3519 3.494749 CCAATCTTGCTCTCCTCCATCTC 60.495 52.174 0.00 0.00 0.00 2.75
2811 3520 2.844654 TCTTGCTCTCCTCCATCTCT 57.155 50.000 0.00 0.00 0.00 3.10
2812 3521 3.961484 TCTTGCTCTCCTCCATCTCTA 57.039 47.619 0.00 0.00 0.00 2.43
2813 3522 3.561143 TCTTGCTCTCCTCCATCTCTAC 58.439 50.000 0.00 0.00 0.00 2.59
2814 3523 2.373335 TGCTCTCCTCCATCTCTACC 57.627 55.000 0.00 0.00 0.00 3.18
2815 3524 1.243902 GCTCTCCTCCATCTCTACCG 58.756 60.000 0.00 0.00 0.00 4.02
2816 3525 1.202830 GCTCTCCTCCATCTCTACCGA 60.203 57.143 0.00 0.00 0.00 4.69
2817 3526 2.778299 CTCTCCTCCATCTCTACCGAG 58.222 57.143 0.00 0.00 38.67 4.63
2818 3527 1.422024 TCTCCTCCATCTCTACCGAGG 59.578 57.143 0.00 0.00 42.82 4.63
2819 3528 0.178987 TCCTCCATCTCTACCGAGGC 60.179 60.000 0.00 0.00 41.48 4.70
2820 3529 1.182385 CCTCCATCTCTACCGAGGCC 61.182 65.000 0.00 0.00 35.80 5.19
2821 3530 0.468214 CTCCATCTCTACCGAGGCCA 60.468 60.000 5.01 0.00 37.86 5.36
2822 3531 0.032515 TCCATCTCTACCGAGGCCAA 60.033 55.000 5.01 0.00 37.86 4.52
2823 3532 0.105039 CCATCTCTACCGAGGCCAAC 59.895 60.000 5.01 0.00 37.86 3.77
2824 3533 0.105039 CATCTCTACCGAGGCCAACC 59.895 60.000 5.01 0.00 37.86 3.77
2837 3546 1.883021 CCAACCTTTGGGTCATCGC 59.117 57.895 0.00 0.00 46.67 4.58
2838 3547 0.609131 CCAACCTTTGGGTCATCGCT 60.609 55.000 0.00 0.00 46.67 4.93
2839 3548 0.523072 CAACCTTTGGGTCATCGCTG 59.477 55.000 0.00 0.00 46.67 5.18
2840 3549 0.609131 AACCTTTGGGTCATCGCTGG 60.609 55.000 0.00 0.00 46.67 4.85
2841 3550 2.409870 CCTTTGGGTCATCGCTGGC 61.410 63.158 0.00 0.00 0.00 4.85
2842 3551 2.745884 TTTGGGTCATCGCTGGCG 60.746 61.111 8.80 8.80 41.35 5.69
2846 3555 3.430862 GGTCATCGCTGGCGCAAA 61.431 61.111 10.83 0.00 39.59 3.68
2847 3556 2.099062 GTCATCGCTGGCGCAAAG 59.901 61.111 10.83 7.44 39.59 2.77
2848 3557 2.047370 TCATCGCTGGCGCAAAGA 60.047 55.556 10.83 0.00 39.59 2.52
2849 3558 1.670730 TCATCGCTGGCGCAAAGAA 60.671 52.632 10.83 0.00 39.59 2.52
2850 3559 1.226211 CATCGCTGGCGCAAAGAAG 60.226 57.895 10.83 4.41 39.59 2.85
2851 3560 3.044059 ATCGCTGGCGCAAAGAAGC 62.044 57.895 10.83 8.93 39.59 3.86
2852 3561 3.730761 CGCTGGCGCAAAGAAGCT 61.731 61.111 10.83 0.00 35.30 3.74
2853 3562 2.390599 CGCTGGCGCAAAGAAGCTA 61.391 57.895 10.83 0.00 35.30 3.32
2854 3563 1.427020 GCTGGCGCAAAGAAGCTAG 59.573 57.895 10.83 0.00 43.51 3.42
2855 3564 1.986575 GCTGGCGCAAAGAAGCTAGG 61.987 60.000 10.83 0.00 41.41 3.02
2856 3565 1.372087 CTGGCGCAAAGAAGCTAGGG 61.372 60.000 10.83 0.00 38.14 3.53
2857 3566 1.377333 GGCGCAAAGAAGCTAGGGT 60.377 57.895 10.83 0.00 0.00 4.34
2858 3567 1.369839 GGCGCAAAGAAGCTAGGGTC 61.370 60.000 10.83 0.00 0.00 4.46
2859 3568 0.391793 GCGCAAAGAAGCTAGGGTCT 60.392 55.000 0.30 0.00 0.00 3.85
2860 3569 1.946283 GCGCAAAGAAGCTAGGGTCTT 60.946 52.381 0.30 0.00 35.59 3.01
2861 3570 2.427506 CGCAAAGAAGCTAGGGTCTTT 58.572 47.619 5.47 5.47 43.26 2.52
2862 3571 2.814336 CGCAAAGAAGCTAGGGTCTTTT 59.186 45.455 8.14 0.00 41.12 2.27
2863 3572 4.000988 CGCAAAGAAGCTAGGGTCTTTTA 58.999 43.478 8.14 0.00 41.12 1.52
2864 3573 4.636206 CGCAAAGAAGCTAGGGTCTTTTAT 59.364 41.667 8.14 0.00 41.12 1.40
2865 3574 5.123979 CGCAAAGAAGCTAGGGTCTTTTATT 59.876 40.000 8.14 0.00 41.12 1.40
2866 3575 6.349363 CGCAAAGAAGCTAGGGTCTTTTATTT 60.349 38.462 8.14 0.00 41.12 1.40
2867 3576 7.030165 GCAAAGAAGCTAGGGTCTTTTATTTC 58.970 38.462 8.14 0.00 41.12 2.17
2868 3577 7.309194 GCAAAGAAGCTAGGGTCTTTTATTTCA 60.309 37.037 8.14 0.00 41.12 2.69
2869 3578 7.689446 AAGAAGCTAGGGTCTTTTATTTCAC 57.311 36.000 0.00 0.00 29.67 3.18
2870 3579 5.875359 AGAAGCTAGGGTCTTTTATTTCACG 59.125 40.000 0.00 0.00 0.00 4.35
2871 3580 3.939592 AGCTAGGGTCTTTTATTTCACGC 59.060 43.478 0.00 0.00 0.00 5.34
2872 3581 3.242316 GCTAGGGTCTTTTATTTCACGCG 60.242 47.826 3.53 3.53 0.00 6.01
2873 3582 3.048337 AGGGTCTTTTATTTCACGCGA 57.952 42.857 15.93 0.00 0.00 5.87
2874 3583 3.000727 AGGGTCTTTTATTTCACGCGAG 58.999 45.455 15.93 4.59 0.00 5.03
2888 3597 3.234390 CGAGTAATCCGCATGCCG 58.766 61.111 13.15 5.80 0.00 5.69
2889 3598 1.591594 CGAGTAATCCGCATGCCGT 60.592 57.895 13.15 0.00 34.38 5.68
2890 3599 1.821241 CGAGTAATCCGCATGCCGTG 61.821 60.000 13.15 0.68 34.38 4.94
2891 3600 0.810031 GAGTAATCCGCATGCCGTGT 60.810 55.000 13.15 1.00 34.38 4.49
2892 3601 0.392461 AGTAATCCGCATGCCGTGTT 60.392 50.000 13.15 8.15 34.38 3.32
2893 3602 0.450184 GTAATCCGCATGCCGTGTTT 59.550 50.000 13.15 5.24 34.38 2.83
2894 3603 0.449786 TAATCCGCATGCCGTGTTTG 59.550 50.000 13.15 0.00 34.38 2.93
2895 3604 1.523154 AATCCGCATGCCGTGTTTGT 61.523 50.000 13.15 0.00 34.38 2.83
2896 3605 1.523154 ATCCGCATGCCGTGTTTGTT 61.523 50.000 13.15 0.00 34.38 2.83
2897 3606 2.015627 CCGCATGCCGTGTTTGTTG 61.016 57.895 13.15 0.00 34.38 3.33
2898 3607 2.015627 CGCATGCCGTGTTTGTTGG 61.016 57.895 13.15 0.00 0.00 3.77
2899 3608 1.664333 GCATGCCGTGTTTGTTGGG 60.664 57.895 6.36 0.00 0.00 4.12
2900 3609 1.739049 CATGCCGTGTTTGTTGGGT 59.261 52.632 0.00 0.00 0.00 4.51
2901 3610 0.597118 CATGCCGTGTTTGTTGGGTG 60.597 55.000 0.00 0.00 0.00 4.61
2902 3611 1.040339 ATGCCGTGTTTGTTGGGTGT 61.040 50.000 0.00 0.00 0.00 4.16
2903 3612 1.065109 GCCGTGTTTGTTGGGTGTC 59.935 57.895 0.00 0.00 0.00 3.67
2904 3613 1.731093 CCGTGTTTGTTGGGTGTCC 59.269 57.895 0.00 0.00 0.00 4.02
2905 3614 0.750182 CCGTGTTTGTTGGGTGTCCT 60.750 55.000 0.00 0.00 0.00 3.85
2906 3615 0.380378 CGTGTTTGTTGGGTGTCCTG 59.620 55.000 0.00 0.00 0.00 3.86
2907 3616 1.470051 GTGTTTGTTGGGTGTCCTGT 58.530 50.000 0.00 0.00 0.00 4.00
2908 3617 2.645802 GTGTTTGTTGGGTGTCCTGTA 58.354 47.619 0.00 0.00 0.00 2.74
2909 3618 3.018149 GTGTTTGTTGGGTGTCCTGTAA 58.982 45.455 0.00 0.00 0.00 2.41
2910 3619 3.018149 TGTTTGTTGGGTGTCCTGTAAC 58.982 45.455 0.00 0.00 0.00 2.50
2911 3620 3.018149 GTTTGTTGGGTGTCCTGTAACA 58.982 45.455 0.00 0.00 0.00 2.41
2912 3621 3.367646 TTGTTGGGTGTCCTGTAACAA 57.632 42.857 0.00 0.00 38.48 2.83
2913 3622 3.367646 TGTTGGGTGTCCTGTAACAAA 57.632 42.857 0.00 0.00 0.00 2.83
2914 3623 3.018149 TGTTGGGTGTCCTGTAACAAAC 58.982 45.455 0.00 0.00 0.00 2.93
2915 3624 3.284617 GTTGGGTGTCCTGTAACAAACT 58.715 45.455 0.00 0.00 0.00 2.66
2916 3625 3.202829 TGGGTGTCCTGTAACAAACTC 57.797 47.619 0.00 0.00 0.00 3.01
2917 3626 2.775384 TGGGTGTCCTGTAACAAACTCT 59.225 45.455 0.00 0.00 0.00 3.24
2918 3627 3.201266 TGGGTGTCCTGTAACAAACTCTT 59.799 43.478 0.00 0.00 0.00 2.85
2919 3628 4.204799 GGGTGTCCTGTAACAAACTCTTT 58.795 43.478 0.00 0.00 0.00 2.52
2920 3629 4.643334 GGGTGTCCTGTAACAAACTCTTTT 59.357 41.667 0.00 0.00 0.00 2.27
2921 3630 5.220989 GGGTGTCCTGTAACAAACTCTTTTC 60.221 44.000 0.00 0.00 0.00 2.29
2922 3631 5.589050 GGTGTCCTGTAACAAACTCTTTTCT 59.411 40.000 0.00 0.00 0.00 2.52
2923 3632 6.764560 GGTGTCCTGTAACAAACTCTTTTCTA 59.235 38.462 0.00 0.00 0.00 2.10
2924 3633 7.444487 GGTGTCCTGTAACAAACTCTTTTCTAT 59.556 37.037 0.00 0.00 0.00 1.98
2925 3634 8.496751 GTGTCCTGTAACAAACTCTTTTCTATC 58.503 37.037 0.00 0.00 0.00 2.08
2926 3635 8.429641 TGTCCTGTAACAAACTCTTTTCTATCT 58.570 33.333 0.00 0.00 0.00 1.98
2927 3636 9.274206 GTCCTGTAACAAACTCTTTTCTATCTT 57.726 33.333 0.00 0.00 0.00 2.40
2948 3657 7.042797 TCTTAATTAATGGATGAGGCAAAGC 57.957 36.000 0.00 0.00 0.00 3.51
2949 3658 6.835488 TCTTAATTAATGGATGAGGCAAAGCT 59.165 34.615 0.00 0.00 0.00 3.74
2950 3659 5.945144 AATTAATGGATGAGGCAAAGCTT 57.055 34.783 0.00 0.00 0.00 3.74
2951 3660 5.945144 ATTAATGGATGAGGCAAAGCTTT 57.055 34.783 5.69 5.69 0.00 3.51
2952 3661 5.743636 TTAATGGATGAGGCAAAGCTTTT 57.256 34.783 9.53 0.00 0.00 2.27
2953 3662 3.604875 ATGGATGAGGCAAAGCTTTTG 57.395 42.857 9.53 6.62 0.00 2.44
3039 3755 4.443063 CGAACATTGACTTGAGAACGTACA 59.557 41.667 0.00 0.00 0.00 2.90
3050 3766 2.664568 GAGAACGTACAGCGCACATTAA 59.335 45.455 11.47 0.00 46.11 1.40
3124 3842 0.176680 CGGTCCCTCTCAACATGGAG 59.823 60.000 0.00 0.00 36.21 3.86
3256 3979 4.929808 GTGATGAAACTTCGTATCACCACT 59.070 41.667 9.95 0.00 42.06 4.00
3269 3992 0.861837 CACCACTCGCAAGACTTCAC 59.138 55.000 0.00 0.00 45.01 3.18
3282 4005 4.386867 AGACTTCACTTCTGTCGTTCAA 57.613 40.909 0.00 0.00 36.01 2.69
3308 4031 9.816787 AAGAAAATACTTAATACTTTGGGACCA 57.183 29.630 0.00 0.00 0.00 4.02
3363 4090 6.612049 GGTATATTTGTTCCAAAATACCCCCA 59.388 38.462 18.25 0.00 35.42 4.96
3411 4138 7.052142 TCCCGGAAAATAGATTCTCTAAGTC 57.948 40.000 0.73 0.00 31.96 3.01
3420 4147 5.407407 AGATTCTCTAAGTCCTTCGCAAA 57.593 39.130 0.00 0.00 0.00 3.68
3486 4214 7.823149 ACACCAGTTACTACATCGAATAAAC 57.177 36.000 0.00 0.00 0.00 2.01
3602 4362 8.165239 TGATATTGAATTGGTAATGTAGGTGC 57.835 34.615 0.00 0.00 0.00 5.01
3717 4477 3.192001 GTGATGCCAGAGAATGCTTTGAA 59.808 43.478 0.00 0.00 0.00 2.69
3729 4489 3.290308 TGCTTTGAAGAGTCGAGAGTC 57.710 47.619 0.00 0.00 0.00 3.36
3740 4500 2.392181 CGAGAGTCGAGACACGCCT 61.392 63.158 5.99 0.00 43.74 5.52
3753 4513 1.228459 ACGCCTTTTTCCCCTGTCC 60.228 57.895 0.00 0.00 0.00 4.02
3765 4525 0.251297 CCCTGTCCCTCAATGTTGCA 60.251 55.000 0.00 0.00 0.00 4.08
3772 4532 3.444742 GTCCCTCAATGTTGCATGAATCA 59.555 43.478 0.00 0.00 0.00 2.57
3923 4684 5.447624 AACCCAAAACTTGTTCCGATAAG 57.552 39.130 0.00 0.00 0.00 1.73
3935 4696 0.882474 CCGATAAGACCTAGCCCGAG 59.118 60.000 0.00 0.00 0.00 4.63
3949 4710 0.613777 CCCGAGGCTAGTTCCAAAGT 59.386 55.000 0.00 0.00 0.00 2.66
3955 4716 3.477530 AGGCTAGTTCCAAAGTCAACAC 58.522 45.455 0.00 0.00 0.00 3.32
4008 4769 5.273208 AGAGGTTATACCACTCACACATCT 58.727 41.667 0.00 0.00 41.95 2.90
4012 4773 3.533606 ATACCACTCACACATCTGCTC 57.466 47.619 0.00 0.00 0.00 4.26
4041 4802 1.913317 CACGAGCTTCACATCGATGA 58.087 50.000 31.33 8.69 41.40 2.92
4091 4938 6.546034 CCCCTAAACATTTGACCGATTAGAAT 59.454 38.462 0.00 0.00 0.00 2.40
4120 4968 3.909732 ACAGACCCAGGAAATGAACAAA 58.090 40.909 0.00 0.00 0.00 2.83
4121 4969 3.636764 ACAGACCCAGGAAATGAACAAAC 59.363 43.478 0.00 0.00 0.00 2.93
4122 4970 3.636300 CAGACCCAGGAAATGAACAAACA 59.364 43.478 0.00 0.00 0.00 2.83
4123 4971 3.636764 AGACCCAGGAAATGAACAAACAC 59.363 43.478 0.00 0.00 0.00 3.32
4124 4972 3.636764 GACCCAGGAAATGAACAAACACT 59.363 43.478 0.00 0.00 0.00 3.55
4126 4974 3.005791 CCCAGGAAATGAACAAACACTCC 59.994 47.826 0.00 0.00 0.00 3.85
4129 4977 5.224888 CAGGAAATGAACAAACACTCCATG 58.775 41.667 0.00 0.00 31.46 3.66
4130 4978 3.989817 GGAAATGAACAAACACTCCATGC 59.010 43.478 0.00 0.00 0.00 4.06
4131 4979 4.501229 GGAAATGAACAAACACTCCATGCA 60.501 41.667 0.00 0.00 0.00 3.96
4140 4988 1.355381 ACACTCCATGCAGGGATTCAA 59.645 47.619 22.29 0.00 36.09 2.69
4182 5030 8.162880 CGACAATCAGACACTTAGAATAACAAC 58.837 37.037 0.00 0.00 0.00 3.32
4183 5031 8.018677 ACAATCAGACACTTAGAATAACAACG 57.981 34.615 0.00 0.00 0.00 4.10
4193 5041 6.380274 ACTTAGAATAACAACGGAGATGAGGA 59.620 38.462 0.00 0.00 33.32 3.71
4230 5078 2.727916 CGCGAGGAAACAATGTAAAGCC 60.728 50.000 0.00 0.00 0.00 4.35
4231 5079 2.415491 GCGAGGAAACAATGTAAAGCCC 60.415 50.000 0.00 0.00 0.00 5.19
4235 5083 2.094906 GGAAACAATGTAAAGCCCGGTC 60.095 50.000 0.00 0.00 0.00 4.79
4236 5084 2.279935 AACAATGTAAAGCCCGGTCA 57.720 45.000 0.00 0.00 0.00 4.02
4254 5102 4.162072 GGTCACGATGTGATCATCTATCG 58.838 47.826 25.32 25.32 44.63 2.92
4270 5118 9.912634 ATCATCTATCGTTTGAAAAACAACATT 57.087 25.926 3.97 0.00 38.29 2.71
4355 5223 6.566197 AAAAGTAGAAGATTGCAACCTCTG 57.434 37.500 0.00 0.00 0.00 3.35
4356 5224 4.899352 AGTAGAAGATTGCAACCTCTGT 57.101 40.909 0.00 0.00 0.00 3.41
4357 5225 5.234466 AGTAGAAGATTGCAACCTCTGTT 57.766 39.130 0.00 0.00 34.14 3.16
5296 6180 3.536956 AAGAATGCATGCCAAATCCAG 57.463 42.857 16.68 0.00 0.00 3.86
5297 6181 2.742348 AGAATGCATGCCAAATCCAGA 58.258 42.857 16.68 0.00 0.00 3.86
5298 6182 2.429610 AGAATGCATGCCAAATCCAGAC 59.570 45.455 16.68 0.00 0.00 3.51
5299 6183 1.855295 ATGCATGCCAAATCCAGACA 58.145 45.000 16.68 0.00 0.00 3.41
5300 6184 1.179152 TGCATGCCAAATCCAGACAG 58.821 50.000 16.68 0.00 0.00 3.51
5301 6185 1.180029 GCATGCCAAATCCAGACAGT 58.820 50.000 6.36 0.00 0.00 3.55
5302 6186 1.135199 GCATGCCAAATCCAGACAGTG 60.135 52.381 6.36 0.00 0.00 3.66
5355 6271 3.557686 GCCATGCCTTTGGACAATTCTTT 60.558 43.478 1.86 0.00 39.25 2.52
5570 6486 4.726583 TCAACTAGATCAGCCGGTATACT 58.273 43.478 1.90 0.00 0.00 2.12
5620 6536 2.996631 CCTTCTGAAAGGTGCTATGCT 58.003 47.619 0.00 0.00 46.10 3.79
5771 6689 3.552890 GGATTCTCCGCAAAATAATGCCC 60.553 47.826 0.00 0.00 43.47 5.36
5773 6691 0.030638 CTCCGCAAAATAATGCCCGG 59.969 55.000 0.00 0.00 43.47 5.73
5775 6693 1.025812 CCGCAAAATAATGCCCGGTA 58.974 50.000 0.00 0.00 43.47 4.02
6279 7315 2.726691 CGCGCGATTGAGTTTCGGT 61.727 57.895 28.94 0.00 37.10 4.69
6308 7344 0.921347 GAACTATATATGCCGCGCGG 59.079 55.000 43.13 43.13 38.57 6.46
6327 7363 4.166011 GCTAGTTTGGCGCGGCTG 62.166 66.667 33.23 16.16 0.00 4.85
6328 7364 2.742372 CTAGTTTGGCGCGGCTGT 60.742 61.111 33.23 16.80 0.00 4.40
6329 7365 2.281208 TAGTTTGGCGCGGCTGTT 60.281 55.556 33.23 17.83 0.00 3.16
6330 7366 1.004799 TAGTTTGGCGCGGCTGTTA 60.005 52.632 33.23 16.83 0.00 2.41
6331 7367 1.017177 TAGTTTGGCGCGGCTGTTAG 61.017 55.000 33.23 0.00 0.00 2.34
6332 7368 2.031314 TTTGGCGCGGCTGTTAGA 59.969 55.556 33.23 9.38 0.00 2.10
6333 7369 2.032634 TTTGGCGCGGCTGTTAGAG 61.033 57.895 33.23 0.00 0.00 2.43
6334 7370 2.443260 TTTGGCGCGGCTGTTAGAGA 62.443 55.000 33.23 7.69 0.00 3.10
6335 7371 2.107141 GGCGCGGCTGTTAGAGAT 59.893 61.111 27.05 0.00 0.00 2.75
6336 7372 2.240500 GGCGCGGCTGTTAGAGATG 61.241 63.158 27.05 0.00 0.00 2.90
6375 7411 0.248377 GCTTTCATGCCATCACGAGC 60.248 55.000 0.00 0.00 0.00 5.03
6418 7454 1.400530 AACCTTCGCTATAGCCGCCT 61.401 55.000 19.00 0.00 37.91 5.52
6423 7459 0.526211 TCGCTATAGCCGCCTACATG 59.474 55.000 19.00 1.81 37.91 3.21
6427 7463 1.893137 CTATAGCCGCCTACATGGTCA 59.107 52.381 0.00 0.00 38.35 4.02
6430 7466 1.050988 AGCCGCCTACATGGTCATCT 61.051 55.000 0.00 0.00 38.35 2.90
6435 7471 4.389374 CCGCCTACATGGTCATCTAAATT 58.611 43.478 0.00 0.00 38.35 1.82
6437 7473 4.452455 CGCCTACATGGTCATCTAAATTCC 59.548 45.833 0.00 0.00 38.35 3.01
6438 7474 4.452455 GCCTACATGGTCATCTAAATTCCG 59.548 45.833 0.00 0.00 38.35 4.30
6459 7495 2.205074 GATAGTGAAGGGCGATGTGTG 58.795 52.381 0.00 0.00 0.00 3.82
6505 7541 2.867109 AGGATGGTGAAGTTCAGTGG 57.133 50.000 5.62 0.00 0.00 4.00
6524 7560 1.541670 GGTGGAGCTACACGACCAAAA 60.542 52.381 22.77 0.00 42.23 2.44
6525 7561 1.529865 GTGGAGCTACACGACCAAAAC 59.470 52.381 14.67 0.00 34.11 2.43
6529 7565 1.414919 AGCTACACGACCAAAACTGGA 59.585 47.619 0.00 0.00 0.00 3.86
6572 7608 0.466372 GCTACTTTCCCCTCATGGCC 60.466 60.000 0.00 0.00 0.00 5.36
6575 7611 1.387737 CTTTCCCCTCATGGCCCAA 59.612 57.895 0.00 0.00 0.00 4.12
6581 7617 1.413118 CCCTCATGGCCCAATTTACC 58.587 55.000 0.00 0.00 0.00 2.85
6602 7638 5.253330 ACCCTCAATACCACACTATGTTTG 58.747 41.667 0.00 0.00 0.00 2.93
6692 7736 5.105997 GGCTTGATTGCACTCACTAAGATTT 60.106 40.000 6.20 0.00 34.04 2.17
6695 7739 8.023128 GCTTGATTGCACTCACTAAGATTTAAA 58.977 33.333 6.20 0.00 0.00 1.52
6703 7747 9.129209 GCACTCACTAAGATTTAAATTTGTTCC 57.871 33.333 1.43 0.00 0.00 3.62
6791 7835 8.704849 TCCCCATGGTATTTTAGAACATTATG 57.295 34.615 11.73 0.00 0.00 1.90
6809 7853 3.742433 ATGGAGCTAGATCACCGAAAG 57.258 47.619 10.68 0.00 0.00 2.62
6835 7879 4.161754 CCCCTCACGTATTTAAACTCCTCT 59.838 45.833 0.00 0.00 0.00 3.69
6836 7880 5.109903 CCCTCACGTATTTAAACTCCTCTG 58.890 45.833 0.00 0.00 0.00 3.35
6853 7897 2.187946 GCCGTCTGATGGGGACTG 59.812 66.667 17.29 0.00 0.00 3.51
6868 7944 4.474651 TGGGGACTGTCTCAACATTATCAT 59.525 41.667 10.30 0.00 34.13 2.45
6869 7945 5.059833 GGGGACTGTCTCAACATTATCATC 58.940 45.833 10.30 0.00 34.13 2.92
6870 7946 5.396772 GGGGACTGTCTCAACATTATCATCA 60.397 44.000 10.30 0.00 34.13 3.07
6871 7947 5.525378 GGGACTGTCTCAACATTATCATCAC 59.475 44.000 7.85 0.00 34.13 3.06
6872 7948 6.344500 GGACTGTCTCAACATTATCATCACT 58.656 40.000 7.85 0.00 34.13 3.41
6873 7949 6.820656 GGACTGTCTCAACATTATCATCACTT 59.179 38.462 7.85 0.00 34.13 3.16
6874 7950 7.981789 GGACTGTCTCAACATTATCATCACTTA 59.018 37.037 7.85 0.00 34.13 2.24
6875 7951 8.939201 ACTGTCTCAACATTATCATCACTTAG 57.061 34.615 0.00 0.00 34.13 2.18
6876 7952 7.984050 ACTGTCTCAACATTATCATCACTTAGG 59.016 37.037 0.00 0.00 34.13 2.69
6877 7953 8.078060 TGTCTCAACATTATCATCACTTAGGA 57.922 34.615 0.00 0.00 0.00 2.94
6892 7968 2.154567 TAGGATTAGGAGTGGTGCGT 57.845 50.000 0.00 0.00 0.00 5.24
6913 7989 3.180387 GTGATGAAAGTTTTCTTGCACGC 59.820 43.478 6.21 0.00 46.92 5.34
6929 8005 2.159960 GCACGCTTTTGTACGAGAGAAG 60.160 50.000 4.83 0.00 0.00 2.85
7027 8116 3.057596 GGTGGTGGTACAATGAATGTGTG 60.058 47.826 0.00 0.00 44.16 3.82
7098 8187 1.755179 CTCGATTGCCTTCACCCATT 58.245 50.000 0.00 0.00 0.00 3.16
7102 8191 3.118075 TCGATTGCCTTCACCCATTCATA 60.118 43.478 0.00 0.00 0.00 2.15
7488 8888 3.530104 CGTCGCCTACGTCAACGC 61.530 66.667 1.81 0.00 46.72 4.84
7801 9201 4.636435 CCACTCCACGGGCGGTTT 62.636 66.667 0.00 0.00 0.00 3.27
7967 9369 5.752036 AGAAACATCTGAGAATCACTGGA 57.248 39.130 0.00 0.00 42.56 3.86
8044 9452 8.466086 AACAAATTTGACTGAACTTGTTTCTC 57.534 30.769 24.64 0.00 34.27 2.87
8247 9655 1.589716 GGTCAAGCACCACCTCATGC 61.590 60.000 0.00 0.00 45.98 4.06
8299 9707 2.770164 AACACGAAGATGAAGGGGAG 57.230 50.000 0.00 0.00 0.00 4.30
8355 9763 1.181098 CCTGGAGTTTGCCACCAAGG 61.181 60.000 0.00 0.00 41.84 3.61
8499 9908 2.951642 CGGTCATGCCCATTAACTTCAT 59.048 45.455 0.00 0.00 0.00 2.57
8593 10002 3.889538 AGAAAAGTCCCTGGTGTTTTAGC 59.110 43.478 0.00 0.00 0.00 3.09
8726 10135 0.040692 GTTTCGTTCGTTTCTGGGCC 60.041 55.000 0.00 0.00 0.00 5.80
9159 10575 3.844090 GGGCGTGAGGGAGAGAGC 61.844 72.222 0.00 0.00 0.00 4.09
9367 10783 1.304381 AAACCATGGCGTGCCTGAT 60.304 52.632 13.04 0.00 36.94 2.90
9418 10847 7.339466 AGTTGGTAATCAGTTGGTAATCATTCC 59.661 37.037 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 3.560251 CCCCGGGCCTCACTATGG 61.560 72.222 17.73 0.00 0.00 2.74
3 4 1.843376 ATCCCCGGGCCTCACTATG 60.843 63.158 17.73 0.00 0.00 2.23
5 6 1.951923 TACATCCCCGGGCCTCACTA 61.952 60.000 17.73 0.00 0.00 2.74
7 8 2.766651 TACATCCCCGGGCCTCAC 60.767 66.667 17.73 0.00 0.00 3.51
8 9 2.445845 CTACATCCCCGGGCCTCA 60.446 66.667 17.73 0.00 0.00 3.86
9 10 3.942439 GCTACATCCCCGGGCCTC 61.942 72.222 17.73 0.00 0.00 4.70
12 13 1.562672 ATATGGCTACATCCCCGGGC 61.563 60.000 17.73 0.37 38.53 6.13
13 14 0.541863 GATATGGCTACATCCCCGGG 59.458 60.000 15.80 15.80 38.53 5.73
14 15 0.175760 CGATATGGCTACATCCCCGG 59.824 60.000 0.00 0.00 38.53 5.73
15 16 0.175760 CCGATATGGCTACATCCCCG 59.824 60.000 0.00 0.00 38.53 5.73
16 17 1.066143 CACCGATATGGCTACATCCCC 60.066 57.143 0.00 0.00 43.94 4.81
17 18 1.899814 TCACCGATATGGCTACATCCC 59.100 52.381 0.00 0.00 43.94 3.85
18 19 3.326747 GTTCACCGATATGGCTACATCC 58.673 50.000 0.00 0.00 43.94 3.51
19 20 3.006967 AGGTTCACCGATATGGCTACATC 59.993 47.826 0.00 0.00 43.94 3.06
20 21 2.972713 AGGTTCACCGATATGGCTACAT 59.027 45.455 0.00 0.00 43.94 2.29
21 22 2.364324 GAGGTTCACCGATATGGCTACA 59.636 50.000 0.00 0.00 43.94 2.74
22 23 2.607282 CGAGGTTCACCGATATGGCTAC 60.607 54.545 0.00 0.00 43.94 3.58
23 24 1.611977 CGAGGTTCACCGATATGGCTA 59.388 52.381 0.00 0.00 43.94 3.93
24 25 0.389391 CGAGGTTCACCGATATGGCT 59.611 55.000 0.00 0.00 43.94 4.75
25 26 0.104304 ACGAGGTTCACCGATATGGC 59.896 55.000 0.00 0.00 43.94 4.40
26 27 2.596904 AACGAGGTTCACCGATATGG 57.403 50.000 0.00 0.00 46.41 2.74
27 28 4.426416 TGTTAACGAGGTTCACCGATATG 58.574 43.478 0.26 0.00 42.08 1.78
28 29 4.724074 TGTTAACGAGGTTCACCGATAT 57.276 40.909 0.26 0.00 42.08 1.63
29 30 4.517952 TTGTTAACGAGGTTCACCGATA 57.482 40.909 0.26 0.00 42.08 2.92
30 31 3.389925 TTGTTAACGAGGTTCACCGAT 57.610 42.857 0.26 0.00 42.08 4.18
31 32 2.886862 TTGTTAACGAGGTTCACCGA 57.113 45.000 0.26 0.00 42.08 4.69
32 33 3.744426 AGATTTGTTAACGAGGTTCACCG 59.256 43.478 0.26 0.00 42.08 4.94
33 34 4.143179 CGAGATTTGTTAACGAGGTTCACC 60.143 45.833 0.26 0.00 0.00 4.02
34 35 4.143179 CCGAGATTTGTTAACGAGGTTCAC 60.143 45.833 0.26 0.00 0.00 3.18
35 36 3.991773 CCGAGATTTGTTAACGAGGTTCA 59.008 43.478 0.26 0.00 0.00 3.18
36 37 3.992427 ACCGAGATTTGTTAACGAGGTTC 59.008 43.478 0.26 0.00 0.00 3.62
37 38 3.744426 CACCGAGATTTGTTAACGAGGTT 59.256 43.478 0.26 0.00 0.00 3.50
38 39 3.243975 ACACCGAGATTTGTTAACGAGGT 60.244 43.478 0.26 0.00 0.00 3.85
39 40 3.323243 ACACCGAGATTTGTTAACGAGG 58.677 45.455 0.26 0.00 0.00 4.63
40 41 3.059044 CGACACCGAGATTTGTTAACGAG 59.941 47.826 0.26 0.00 38.22 4.18
41 42 2.981805 CGACACCGAGATTTGTTAACGA 59.018 45.455 0.26 0.00 38.22 3.85
42 43 2.727798 ACGACACCGAGATTTGTTAACG 59.272 45.455 0.26 0.00 39.50 3.18
43 44 3.663493 GCACGACACCGAGATTTGTTAAC 60.663 47.826 0.00 0.00 39.50 2.01
44 45 2.477375 GCACGACACCGAGATTTGTTAA 59.523 45.455 0.00 0.00 39.50 2.01
45 46 2.063266 GCACGACACCGAGATTTGTTA 58.937 47.619 0.00 0.00 39.50 2.41
46 47 0.865769 GCACGACACCGAGATTTGTT 59.134 50.000 0.00 0.00 39.50 2.83
47 48 0.033504 AGCACGACACCGAGATTTGT 59.966 50.000 0.00 0.00 39.50 2.83
48 49 0.716108 GAGCACGACACCGAGATTTG 59.284 55.000 0.00 0.00 39.50 2.32
49 50 0.732880 CGAGCACGACACCGAGATTT 60.733 55.000 0.00 0.00 42.66 2.17
50 51 1.154016 CGAGCACGACACCGAGATT 60.154 57.895 0.00 0.00 42.66 2.40
51 52 2.333417 ACGAGCACGACACCGAGAT 61.333 57.895 11.40 0.00 42.66 2.75
52 53 2.976350 ACGAGCACGACACCGAGA 60.976 61.111 11.40 0.00 42.66 4.04
53 54 2.178892 TACACGAGCACGACACCGAG 62.179 60.000 11.40 0.00 42.66 4.63
54 55 1.784036 TTACACGAGCACGACACCGA 61.784 55.000 11.40 0.00 42.66 4.69
55 56 0.731514 ATTACACGAGCACGACACCG 60.732 55.000 11.40 0.00 42.66 4.94
56 57 1.126113 CAATTACACGAGCACGACACC 59.874 52.381 11.40 0.00 42.66 4.16
57 58 1.790623 ACAATTACACGAGCACGACAC 59.209 47.619 11.40 0.00 42.66 3.67
58 59 2.143008 ACAATTACACGAGCACGACA 57.857 45.000 11.40 0.00 42.66 4.35
59 60 3.215244 CAAACAATTACACGAGCACGAC 58.785 45.455 11.40 0.00 42.66 4.34
60 61 2.222213 CCAAACAATTACACGAGCACGA 59.778 45.455 11.40 0.00 42.66 4.35
61 62 2.032377 ACCAAACAATTACACGAGCACG 60.032 45.455 0.76 0.76 45.75 5.34
62 63 3.551551 GACCAAACAATTACACGAGCAC 58.448 45.455 0.00 0.00 0.00 4.40
63 64 2.550606 GGACCAAACAATTACACGAGCA 59.449 45.455 0.00 0.00 0.00 4.26
64 65 2.550606 TGGACCAAACAATTACACGAGC 59.449 45.455 0.00 0.00 0.00 5.03
65 66 4.379394 CCATGGACCAAACAATTACACGAG 60.379 45.833 5.56 0.00 0.00 4.18
66 67 3.504134 CCATGGACCAAACAATTACACGA 59.496 43.478 5.56 0.00 0.00 4.35
67 68 3.504134 TCCATGGACCAAACAATTACACG 59.496 43.478 11.44 0.00 0.00 4.49
68 69 5.184864 TCATCCATGGACCAAACAATTACAC 59.815 40.000 18.99 0.00 0.00 2.90
69 70 5.328565 TCATCCATGGACCAAACAATTACA 58.671 37.500 18.99 0.00 0.00 2.41
70 71 5.913137 TCATCCATGGACCAAACAATTAC 57.087 39.130 18.99 0.00 0.00 1.89
71 72 5.598005 GGATCATCCATGGACCAAACAATTA 59.402 40.000 18.99 0.00 36.28 1.40
72 73 4.406649 GGATCATCCATGGACCAAACAATT 59.593 41.667 18.99 0.00 36.28 2.32
73 74 3.962718 GGATCATCCATGGACCAAACAAT 59.037 43.478 18.99 2.88 36.28 2.71
74 75 3.245550 TGGATCATCCATGGACCAAACAA 60.246 43.478 18.99 0.00 42.67 2.83
75 76 2.311243 TGGATCATCCATGGACCAAACA 59.689 45.455 18.99 11.27 42.67 2.83
76 77 3.017048 TGGATCATCCATGGACCAAAC 57.983 47.619 18.99 8.58 42.67 2.93
86 87 1.688735 GAGGTCATCGTGGATCATCCA 59.311 52.381 0.66 0.66 45.98 3.41
87 88 1.336332 CGAGGTCATCGTGGATCATCC 60.336 57.143 0.00 0.00 46.62 3.51
88 89 2.057503 CGAGGTCATCGTGGATCATC 57.942 55.000 0.00 0.00 46.62 2.92
98 99 6.984474 TGTGTTAGAATAAATCCGAGGTCATC 59.016 38.462 0.00 0.00 0.00 2.92
99 100 6.884832 TGTGTTAGAATAAATCCGAGGTCAT 58.115 36.000 0.00 0.00 0.00 3.06
100 101 6.288941 TGTGTTAGAATAAATCCGAGGTCA 57.711 37.500 0.00 0.00 0.00 4.02
101 102 7.413767 GGTTTGTGTTAGAATAAATCCGAGGTC 60.414 40.741 0.00 0.00 0.00 3.85
102 103 6.373495 GGTTTGTGTTAGAATAAATCCGAGGT 59.627 38.462 0.00 0.00 0.00 3.85
103 104 6.373216 TGGTTTGTGTTAGAATAAATCCGAGG 59.627 38.462 0.00 0.00 0.00 4.63
104 105 7.372451 TGGTTTGTGTTAGAATAAATCCGAG 57.628 36.000 0.00 0.00 0.00 4.63
105 106 7.608376 TGATGGTTTGTGTTAGAATAAATCCGA 59.392 33.333 0.00 0.00 0.00 4.55
106 107 7.757526 TGATGGTTTGTGTTAGAATAAATCCG 58.242 34.615 0.00 0.00 0.00 4.18
111 112 9.461312 AGCTTATGATGGTTTGTGTTAGAATAA 57.539 29.630 0.00 0.00 0.00 1.40
113 114 7.944729 AGCTTATGATGGTTTGTGTTAGAAT 57.055 32.000 0.00 0.00 0.00 2.40
114 115 9.461312 AATAGCTTATGATGGTTTGTGTTAGAA 57.539 29.630 0.00 0.00 0.00 2.10
118 119 8.466798 GGTTAATAGCTTATGATGGTTTGTGTT 58.533 33.333 0.00 0.00 0.00 3.32
119 120 7.834181 AGGTTAATAGCTTATGATGGTTTGTGT 59.166 33.333 0.00 0.00 0.00 3.72
120 121 8.225603 AGGTTAATAGCTTATGATGGTTTGTG 57.774 34.615 0.00 0.00 0.00 3.33
121 122 7.502561 GGAGGTTAATAGCTTATGATGGTTTGT 59.497 37.037 0.00 0.00 30.79 2.83
137 138 2.038689 TGTTGTGCGTGGGAGGTTAATA 59.961 45.455 0.00 0.00 0.00 0.98
617 651 6.422776 AATTTCAATGTCCTACGTGATCAC 57.577 37.500 16.21 16.21 0.00 3.06
645 679 0.965439 AAAATTGCGGTGCCAGCTTA 59.035 45.000 0.00 0.00 35.28 3.09
782 816 6.040278 TCACATGCAAATTTGAAACCAGTAGA 59.960 34.615 22.31 6.46 0.00 2.59
836 870 4.497006 GCAATTATGTAGCTTGCAGTCCTG 60.497 45.833 0.00 0.00 43.62 3.86
1264 1865 2.034104 TGTAGTCCTCGATGTAGCGT 57.966 50.000 0.00 0.00 0.00 5.07
1341 1942 5.571784 CATGTTAGATCCACATGCAAAGT 57.428 39.130 18.15 0.00 43.78 2.66
1348 1949 5.363562 TCTCTTGCATGTTAGATCCACAT 57.636 39.130 2.83 2.83 35.10 3.21
1349 1950 4.763073 CTCTCTTGCATGTTAGATCCACA 58.237 43.478 0.00 0.00 0.00 4.17
1359 1960 2.385875 CGCACGCTCTCTTGCATGT 61.386 57.895 0.00 0.00 37.32 3.21
1420 2021 2.959372 CTGTCCTCCGTGTGCGTA 59.041 61.111 0.00 0.00 36.15 4.42
1447 2048 0.738975 CCATCTTCGTCGTCCTGCTA 59.261 55.000 0.00 0.00 0.00 3.49
2003 2606 7.598278 ACATTGTTTCCAAATAAATGCGAGTA 58.402 30.769 0.00 0.00 33.44 2.59
2056 2659 4.545823 TCCAAACTCAAAAACACTAGCG 57.454 40.909 0.00 0.00 0.00 4.26
2088 2691 7.199541 AGCTTGATAACATGTAAGCATCATC 57.800 36.000 25.39 14.22 45.90 2.92
2170 2773 4.378774 TGGGAATTCATGTTTGCAACTTG 58.621 39.130 7.93 3.79 37.76 3.16
2181 2784 6.704289 AGATGTGTATGTTGGGAATTCATG 57.296 37.500 7.93 0.00 0.00 3.07
2187 2790 6.539173 ACTTGTTAGATGTGTATGTTGGGAA 58.461 36.000 0.00 0.00 0.00 3.97
2280 2980 4.974591 AGAAATGCAAATACGAACTCAGC 58.025 39.130 0.00 0.00 0.00 4.26
2326 3026 3.244665 CCAGGTGATAGATAGCAATGGCA 60.245 47.826 0.00 0.00 44.61 4.92
2327 3027 3.244700 ACCAGGTGATAGATAGCAATGGC 60.245 47.826 9.40 0.00 35.37 4.40
2346 3046 2.280524 CGTCAAACGGGAGCACCA 60.281 61.111 1.58 0.00 40.22 4.17
2383 3083 3.181495 GGTATGACTTCTGACCGTGAGAG 60.181 52.174 0.00 0.00 0.00 3.20
2388 3088 2.231478 CACTGGTATGACTTCTGACCGT 59.769 50.000 0.00 0.00 34.49 4.83
2449 3154 1.933853 AGAGGAAACGCGCATTGATAC 59.066 47.619 5.73 0.00 34.13 2.24
2452 3157 1.298157 CCAGAGGAAACGCGCATTGA 61.298 55.000 5.73 0.00 34.13 2.57
2470 3175 1.776034 GCGCGGTGGAAATCTGATCC 61.776 60.000 8.83 0.00 37.48 3.36
2504 3209 2.478894 GGACAAATTTCTCGTGCTTCGA 59.521 45.455 4.75 4.75 46.83 3.71
2526 3234 2.573869 CAGGTCGAGTGTGGCGAT 59.426 61.111 0.00 0.00 40.19 4.58
2528 3236 4.363990 AGCAGGTCGAGTGTGGCG 62.364 66.667 0.00 0.00 0.00 5.69
2616 3325 0.038892 GGCGACCGATAAGGCGATAA 60.039 55.000 0.00 0.00 46.52 1.75
2617 3326 1.174078 TGGCGACCGATAAGGCGATA 61.174 55.000 0.00 0.00 46.52 2.92
2618 3327 2.338984 GGCGACCGATAAGGCGAT 59.661 61.111 0.00 0.00 46.52 4.58
2619 3328 3.142162 TGGCGACCGATAAGGCGA 61.142 61.111 0.00 0.00 46.52 5.54
2620 3329 2.901051 AAGTGGCGACCGATAAGGCG 62.901 60.000 0.00 0.00 46.52 5.52
2621 3330 0.743345 AAAGTGGCGACCGATAAGGC 60.743 55.000 0.00 0.00 46.52 4.35
2623 3332 1.659098 GTCAAAGTGGCGACCGATAAG 59.341 52.381 0.00 0.00 0.00 1.73
2671 3380 4.003534 CGTACCATCAGCGCAGAG 57.996 61.111 11.47 0.00 0.00 3.35
2676 3385 2.202690 TTCGGCGTACCATCAGCG 60.203 61.111 6.85 0.00 34.57 5.18
2677 3386 2.171725 GGTTCGGCGTACCATCAGC 61.172 63.158 27.68 1.90 35.67 4.26
2678 3387 1.876714 CGGTTCGGCGTACCATCAG 60.877 63.158 30.52 13.92 35.31 2.90
2679 3388 2.182284 CGGTTCGGCGTACCATCA 59.818 61.111 30.52 0.00 35.31 3.07
2680 3389 3.259751 GCGGTTCGGCGTACCATC 61.260 66.667 30.52 19.47 35.31 3.51
2681 3390 4.825252 GGCGGTTCGGCGTACCAT 62.825 66.667 30.52 0.00 43.33 3.55
2689 3398 3.737172 CTTGGCTTGGCGGTTCGG 61.737 66.667 0.00 0.00 0.00 4.30
2690 3399 3.737172 CCTTGGCTTGGCGGTTCG 61.737 66.667 0.00 0.00 0.00 3.95
2691 3400 4.056125 GCCTTGGCTTGGCGGTTC 62.056 66.667 4.11 0.00 41.03 3.62
2697 3406 3.651980 GAGGGAGGCCTTGGCTTGG 62.652 68.421 6.77 0.00 38.98 3.61
2698 3407 2.044551 GAGGGAGGCCTTGGCTTG 60.045 66.667 6.77 0.00 38.98 4.01
2699 3408 2.532715 TGAGGGAGGCCTTGGCTT 60.533 61.111 6.77 3.40 38.98 4.35
2700 3409 2.477190 TAGTGAGGGAGGCCTTGGCT 62.477 60.000 6.77 2.55 42.48 4.75
2701 3410 1.348775 ATAGTGAGGGAGGCCTTGGC 61.349 60.000 6.77 2.49 0.00 4.52
2702 3411 0.471617 CATAGTGAGGGAGGCCTTGG 59.528 60.000 6.77 0.00 0.00 3.61
2703 3412 0.179034 GCATAGTGAGGGAGGCCTTG 60.179 60.000 6.77 0.00 0.00 3.61
2704 3413 0.327000 AGCATAGTGAGGGAGGCCTT 60.327 55.000 6.77 0.00 0.00 4.35
2705 3414 0.762461 GAGCATAGTGAGGGAGGCCT 60.762 60.000 3.86 3.86 0.00 5.19
2706 3415 1.751563 GAGCATAGTGAGGGAGGCC 59.248 63.158 0.00 0.00 0.00 5.19
2707 3416 1.365633 CGAGCATAGTGAGGGAGGC 59.634 63.158 0.00 0.00 0.00 4.70
2708 3417 0.671251 GACGAGCATAGTGAGGGAGG 59.329 60.000 0.00 0.00 0.00 4.30
2709 3418 1.606668 GAGACGAGCATAGTGAGGGAG 59.393 57.143 0.00 0.00 0.00 4.30
2710 3419 1.064685 TGAGACGAGCATAGTGAGGGA 60.065 52.381 0.00 0.00 0.00 4.20
2711 3420 1.393603 TGAGACGAGCATAGTGAGGG 58.606 55.000 0.00 0.00 0.00 4.30
2712 3421 2.620585 TCATGAGACGAGCATAGTGAGG 59.379 50.000 0.00 0.00 0.00 3.86
2713 3422 3.978718 TCATGAGACGAGCATAGTGAG 57.021 47.619 0.00 0.00 0.00 3.51
2714 3423 3.487544 CGTTCATGAGACGAGCATAGTGA 60.488 47.826 19.22 0.00 0.00 3.41
2715 3424 2.786027 CGTTCATGAGACGAGCATAGTG 59.214 50.000 19.22 0.00 0.00 2.74
2716 3425 2.683362 TCGTTCATGAGACGAGCATAGT 59.317 45.455 21.28 0.00 0.00 2.12
2717 3426 3.340337 TCGTTCATGAGACGAGCATAG 57.660 47.619 21.28 1.86 0.00 2.23
2718 3427 3.990318 ATCGTTCATGAGACGAGCATA 57.010 42.857 25.78 12.11 39.31 3.14
2719 3428 2.879002 ATCGTTCATGAGACGAGCAT 57.121 45.000 25.78 14.49 39.31 3.79
2720 3429 2.654749 AATCGTTCATGAGACGAGCA 57.345 45.000 25.78 12.61 39.31 4.26
2721 3430 2.923655 TCAAATCGTTCATGAGACGAGC 59.076 45.455 25.78 5.01 39.31 5.03
2722 3431 5.515548 TTTCAAATCGTTCATGAGACGAG 57.484 39.130 25.78 17.70 39.31 4.18
2723 3432 6.480524 AATTTCAAATCGTTCATGAGACGA 57.519 33.333 24.80 24.80 40.25 4.20
2724 3433 7.423598 CACTAATTTCAAATCGTTCATGAGACG 59.576 37.037 18.38 18.38 0.00 4.18
2725 3434 8.230486 ACACTAATTTCAAATCGTTCATGAGAC 58.770 33.333 0.00 0.00 0.00 3.36
2726 3435 8.322906 ACACTAATTTCAAATCGTTCATGAGA 57.677 30.769 0.00 0.00 0.00 3.27
2730 3439 9.289303 GCATTACACTAATTTCAAATCGTTCAT 57.711 29.630 0.00 0.00 0.00 2.57
2731 3440 8.293157 TGCATTACACTAATTTCAAATCGTTCA 58.707 29.630 0.00 0.00 0.00 3.18
2732 3441 8.667987 TGCATTACACTAATTTCAAATCGTTC 57.332 30.769 0.00 0.00 0.00 3.95
2733 3442 9.469807 TTTGCATTACACTAATTTCAAATCGTT 57.530 25.926 0.00 0.00 30.13 3.85
2734 3443 9.469807 TTTTGCATTACACTAATTTCAAATCGT 57.530 25.926 0.00 0.00 32.74 3.73
2735 3444 9.941991 CTTTTGCATTACACTAATTTCAAATCG 57.058 29.630 0.00 0.00 32.74 3.34
2738 3447 9.593134 ACACTTTTGCATTACACTAATTTCAAA 57.407 25.926 0.00 0.00 31.72 2.69
2739 3448 9.593134 AACACTTTTGCATTACACTAATTTCAA 57.407 25.926 0.00 0.00 0.00 2.69
2740 3449 9.593134 AAACACTTTTGCATTACACTAATTTCA 57.407 25.926 0.00 0.00 0.00 2.69
2744 3453 9.191995 GCTTAAACACTTTTGCATTACACTAAT 57.808 29.630 0.00 0.00 0.00 1.73
2745 3454 8.191446 TGCTTAAACACTTTTGCATTACACTAA 58.809 29.630 0.00 0.00 0.00 2.24
2746 3455 7.708051 TGCTTAAACACTTTTGCATTACACTA 58.292 30.769 0.00 0.00 0.00 2.74
2747 3456 6.568869 TGCTTAAACACTTTTGCATTACACT 58.431 32.000 0.00 0.00 0.00 3.55
2748 3457 6.820470 TGCTTAAACACTTTTGCATTACAC 57.180 33.333 0.00 0.00 0.00 2.90
2749 3458 9.190858 CTTATGCTTAAACACTTTTGCATTACA 57.809 29.630 0.00 0.00 39.97 2.41
2750 3459 9.405587 TCTTATGCTTAAACACTTTTGCATTAC 57.594 29.630 0.00 0.00 39.97 1.89
2751 3460 9.624697 CTCTTATGCTTAAACACTTTTGCATTA 57.375 29.630 0.00 0.00 39.97 1.90
2752 3461 8.143835 ACTCTTATGCTTAAACACTTTTGCATT 58.856 29.630 0.00 0.00 39.97 3.56
2753 3462 7.596248 CACTCTTATGCTTAAACACTTTTGCAT 59.404 33.333 0.00 0.00 41.23 3.96
2754 3463 6.917477 CACTCTTATGCTTAAACACTTTTGCA 59.083 34.615 0.00 0.00 36.13 4.08
2755 3464 6.129088 GCACTCTTATGCTTAAACACTTTTGC 60.129 38.462 0.00 0.00 42.62 3.68
2756 3465 7.325599 GCACTCTTATGCTTAAACACTTTTG 57.674 36.000 0.00 0.00 42.62 2.44
2769 3478 1.432270 GCGGTGGAGCACTCTTATGC 61.432 60.000 0.00 0.00 46.50 3.14
2770 3479 0.811616 GGCGGTGGAGCACTCTTATG 60.812 60.000 0.00 0.00 39.27 1.90
2771 3480 1.264749 TGGCGGTGGAGCACTCTTAT 61.265 55.000 0.00 0.00 39.27 1.73
2772 3481 1.476845 TTGGCGGTGGAGCACTCTTA 61.477 55.000 0.00 0.00 39.27 2.10
2773 3482 2.129555 ATTGGCGGTGGAGCACTCTT 62.130 55.000 0.00 0.00 39.27 2.85
2774 3483 2.527951 GATTGGCGGTGGAGCACTCT 62.528 60.000 0.00 0.00 39.27 3.24
2775 3484 2.045926 ATTGGCGGTGGAGCACTC 60.046 61.111 0.00 0.00 39.27 3.51
2776 3485 2.045926 GATTGGCGGTGGAGCACT 60.046 61.111 0.00 0.00 39.27 4.40
2777 3486 1.675641 AAGATTGGCGGTGGAGCAC 60.676 57.895 0.00 0.00 39.27 4.40
2778 3487 1.675310 CAAGATTGGCGGTGGAGCA 60.675 57.895 0.00 0.00 39.27 4.26
2779 3488 3.056313 GCAAGATTGGCGGTGGAGC 62.056 63.158 0.00 0.00 0.00 4.70
2780 3489 1.372087 GAGCAAGATTGGCGGTGGAG 61.372 60.000 0.00 0.00 36.08 3.86
2781 3490 1.377202 GAGCAAGATTGGCGGTGGA 60.377 57.895 0.00 0.00 36.08 4.02
2782 3491 1.372087 GAGAGCAAGATTGGCGGTGG 61.372 60.000 0.00 0.00 36.08 4.61
2783 3492 1.372087 GGAGAGCAAGATTGGCGGTG 61.372 60.000 0.00 0.00 36.08 4.94
2784 3493 1.078143 GGAGAGCAAGATTGGCGGT 60.078 57.895 0.00 0.00 36.08 5.68
2785 3494 0.813210 GAGGAGAGCAAGATTGGCGG 60.813 60.000 0.00 0.00 36.08 6.13
2786 3495 0.813210 GGAGGAGAGCAAGATTGGCG 60.813 60.000 0.00 0.00 36.08 5.69
2787 3496 0.254178 TGGAGGAGAGCAAGATTGGC 59.746 55.000 0.00 0.00 0.00 4.52
2788 3497 2.438763 AGATGGAGGAGAGCAAGATTGG 59.561 50.000 0.00 0.00 0.00 3.16
2789 3498 3.388676 AGAGATGGAGGAGAGCAAGATTG 59.611 47.826 0.00 0.00 0.00 2.67
2790 3499 3.656496 AGAGATGGAGGAGAGCAAGATT 58.344 45.455 0.00 0.00 0.00 2.40
2791 3500 3.333313 AGAGATGGAGGAGAGCAAGAT 57.667 47.619 0.00 0.00 0.00 2.40
2792 3501 2.844654 AGAGATGGAGGAGAGCAAGA 57.155 50.000 0.00 0.00 0.00 3.02
2793 3502 2.627699 GGTAGAGATGGAGGAGAGCAAG 59.372 54.545 0.00 0.00 0.00 4.01
2794 3503 2.672098 GGTAGAGATGGAGGAGAGCAA 58.328 52.381 0.00 0.00 0.00 3.91
2795 3504 1.477740 CGGTAGAGATGGAGGAGAGCA 60.478 57.143 0.00 0.00 0.00 4.26
2796 3505 1.202830 TCGGTAGAGATGGAGGAGAGC 60.203 57.143 0.00 0.00 0.00 4.09
2797 3506 2.940994 TCGGTAGAGATGGAGGAGAG 57.059 55.000 0.00 0.00 0.00 3.20
2805 3514 3.802652 AAGGTTGGCCTCGGTAGAGATG 61.803 54.545 3.32 0.00 46.33 2.90
2806 3515 1.622725 AAGGTTGGCCTCGGTAGAGAT 60.623 52.381 3.32 0.00 46.33 2.75
2807 3516 0.252103 AAGGTTGGCCTCGGTAGAGA 60.252 55.000 3.32 0.00 46.33 3.10
2808 3517 0.613777 AAAGGTTGGCCTCGGTAGAG 59.386 55.000 3.32 0.00 46.33 2.43
2809 3518 0.323629 CAAAGGTTGGCCTCGGTAGA 59.676 55.000 3.32 0.00 46.33 2.59
2810 3519 0.676782 CCAAAGGTTGGCCTCGGTAG 60.677 60.000 3.32 0.00 46.33 3.18
2811 3520 1.377229 CCAAAGGTTGGCCTCGGTA 59.623 57.895 3.32 0.00 46.33 4.02
2812 3521 2.115266 CCAAAGGTTGGCCTCGGT 59.885 61.111 3.32 0.00 46.33 4.69
2823 3532 2.409870 GCCAGCGATGACCCAAAGG 61.410 63.158 0.06 0.00 40.04 3.11
2824 3533 2.753966 CGCCAGCGATGACCCAAAG 61.754 63.158 6.06 0.00 42.83 2.77
2825 3534 2.745884 CGCCAGCGATGACCCAAA 60.746 61.111 6.06 0.00 42.83 3.28
2836 3545 1.427020 CTAGCTTCTTTGCGCCAGC 59.573 57.895 4.18 4.65 45.41 4.85
2837 3546 1.372087 CCCTAGCTTCTTTGCGCCAG 61.372 60.000 4.18 0.00 38.13 4.85
2838 3547 1.377202 CCCTAGCTTCTTTGCGCCA 60.377 57.895 4.18 0.00 38.13 5.69
2839 3548 1.369839 GACCCTAGCTTCTTTGCGCC 61.370 60.000 4.18 0.00 38.13 6.53
2840 3549 0.391793 AGACCCTAGCTTCTTTGCGC 60.392 55.000 0.00 0.00 38.13 6.09
2841 3550 2.100605 AAGACCCTAGCTTCTTTGCG 57.899 50.000 0.00 0.00 38.13 4.85
2842 3551 6.516739 AATAAAAGACCCTAGCTTCTTTGC 57.483 37.500 11.01 0.00 40.44 3.68
2843 3552 8.023706 GTGAAATAAAAGACCCTAGCTTCTTTG 58.976 37.037 11.01 0.00 40.44 2.77
2844 3553 7.094762 CGTGAAATAAAAGACCCTAGCTTCTTT 60.095 37.037 5.47 5.47 42.62 2.52
2845 3554 6.371825 CGTGAAATAAAAGACCCTAGCTTCTT 59.628 38.462 0.00 0.00 33.32 2.52
2846 3555 5.875359 CGTGAAATAAAAGACCCTAGCTTCT 59.125 40.000 0.00 0.00 0.00 2.85
2847 3556 5.447413 GCGTGAAATAAAAGACCCTAGCTTC 60.447 44.000 0.00 0.00 0.00 3.86
2848 3557 4.395231 GCGTGAAATAAAAGACCCTAGCTT 59.605 41.667 0.00 0.00 0.00 3.74
2849 3558 3.939592 GCGTGAAATAAAAGACCCTAGCT 59.060 43.478 0.00 0.00 0.00 3.32
2850 3559 3.242316 CGCGTGAAATAAAAGACCCTAGC 60.242 47.826 0.00 0.00 0.00 3.42
2851 3560 4.178540 TCGCGTGAAATAAAAGACCCTAG 58.821 43.478 5.77 0.00 0.00 3.02
2852 3561 4.178540 CTCGCGTGAAATAAAAGACCCTA 58.821 43.478 5.77 0.00 0.00 3.53
2853 3562 3.000727 CTCGCGTGAAATAAAAGACCCT 58.999 45.455 5.77 0.00 0.00 4.34
2854 3563 2.740447 ACTCGCGTGAAATAAAAGACCC 59.260 45.455 16.04 0.00 0.00 4.46
2855 3564 5.520022 TTACTCGCGTGAAATAAAAGACC 57.480 39.130 16.04 0.00 0.00 3.85
2856 3565 6.183324 GGATTACTCGCGTGAAATAAAAGAC 58.817 40.000 16.04 0.00 0.00 3.01
2857 3566 5.005012 CGGATTACTCGCGTGAAATAAAAGA 59.995 40.000 16.04 0.00 0.00 2.52
2858 3567 5.188194 CGGATTACTCGCGTGAAATAAAAG 58.812 41.667 16.04 0.00 0.00 2.27
2859 3568 4.492895 GCGGATTACTCGCGTGAAATAAAA 60.493 41.667 16.04 0.07 43.71 1.52
2860 3569 3.000523 GCGGATTACTCGCGTGAAATAAA 59.999 43.478 16.04 1.74 43.71 1.40
2861 3570 2.536803 GCGGATTACTCGCGTGAAATAA 59.463 45.455 16.04 3.76 43.71 1.40
2862 3571 2.121786 GCGGATTACTCGCGTGAAATA 58.878 47.619 16.04 0.00 43.71 1.40
2863 3572 0.928229 GCGGATTACTCGCGTGAAAT 59.072 50.000 16.04 8.61 43.71 2.17
2864 3573 2.365823 GCGGATTACTCGCGTGAAA 58.634 52.632 16.04 3.68 43.71 2.69
2865 3574 4.082192 GCGGATTACTCGCGTGAA 57.918 55.556 16.04 3.82 43.71 3.18
2871 3580 1.591594 ACGGCATGCGGATTACTCG 60.592 57.895 29.51 18.05 0.00 4.18
2872 3581 0.810031 ACACGGCATGCGGATTACTC 60.810 55.000 29.51 4.26 0.00 2.59
2873 3582 0.392461 AACACGGCATGCGGATTACT 60.392 50.000 29.51 5.89 0.00 2.24
2874 3583 0.450184 AAACACGGCATGCGGATTAC 59.550 50.000 29.51 5.78 0.00 1.89
2875 3584 0.449786 CAAACACGGCATGCGGATTA 59.550 50.000 29.51 0.00 0.00 1.75
2876 3585 1.212490 CAAACACGGCATGCGGATT 59.788 52.632 29.51 19.59 0.00 3.01
2877 3586 1.523154 AACAAACACGGCATGCGGAT 61.523 50.000 29.51 15.20 0.00 4.18
2878 3587 2.190170 AACAAACACGGCATGCGGA 61.190 52.632 29.51 0.00 0.00 5.54
2879 3588 2.015627 CAACAAACACGGCATGCGG 61.016 57.895 22.34 22.34 0.00 5.69
2880 3589 2.015627 CCAACAAACACGGCATGCG 61.016 57.895 12.44 9.76 0.00 4.73
2881 3590 1.664333 CCCAACAAACACGGCATGC 60.664 57.895 9.90 9.90 0.00 4.06
2882 3591 0.597118 CACCCAACAAACACGGCATG 60.597 55.000 0.00 0.00 0.00 4.06
2883 3592 1.040339 ACACCCAACAAACACGGCAT 61.040 50.000 0.00 0.00 0.00 4.40
2884 3593 1.658686 GACACCCAACAAACACGGCA 61.659 55.000 0.00 0.00 0.00 5.69
2885 3594 1.065109 GACACCCAACAAACACGGC 59.935 57.895 0.00 0.00 0.00 5.68
2886 3595 0.750182 AGGACACCCAACAAACACGG 60.750 55.000 0.00 0.00 33.88 4.94
2887 3596 0.380378 CAGGACACCCAACAAACACG 59.620 55.000 0.00 0.00 33.88 4.49
2888 3597 1.470051 ACAGGACACCCAACAAACAC 58.530 50.000 0.00 0.00 33.88 3.32
2889 3598 3.018149 GTTACAGGACACCCAACAAACA 58.982 45.455 0.00 0.00 33.88 2.83
2890 3599 3.018149 TGTTACAGGACACCCAACAAAC 58.982 45.455 0.00 0.00 33.88 2.93
2891 3600 3.367646 TGTTACAGGACACCCAACAAA 57.632 42.857 0.00 0.00 33.88 2.83
2892 3601 3.367646 TTGTTACAGGACACCCAACAA 57.632 42.857 0.00 0.00 36.91 2.83
2893 3602 3.018149 GTTTGTTACAGGACACCCAACA 58.982 45.455 0.00 0.00 33.88 3.33
2894 3603 3.284617 AGTTTGTTACAGGACACCCAAC 58.715 45.455 4.32 0.00 33.88 3.77
2895 3604 3.201266 AGAGTTTGTTACAGGACACCCAA 59.799 43.478 4.32 0.00 33.88 4.12
2896 3605 2.775384 AGAGTTTGTTACAGGACACCCA 59.225 45.455 4.32 0.00 33.88 4.51
2897 3606 3.487120 AGAGTTTGTTACAGGACACCC 57.513 47.619 4.32 0.00 0.00 4.61
2898 3607 5.589050 AGAAAAGAGTTTGTTACAGGACACC 59.411 40.000 4.32 0.00 0.00 4.16
2899 3608 6.679327 AGAAAAGAGTTTGTTACAGGACAC 57.321 37.500 4.32 0.00 0.00 3.67
2900 3609 8.429641 AGATAGAAAAGAGTTTGTTACAGGACA 58.570 33.333 4.32 0.00 0.00 4.02
2901 3610 8.834749 AGATAGAAAAGAGTTTGTTACAGGAC 57.165 34.615 0.00 0.00 0.00 3.85
2922 3631 8.796475 GCTTTGCCTCATCCATTAATTAAGATA 58.204 33.333 3.94 0.00 0.00 1.98
2923 3632 7.508296 AGCTTTGCCTCATCCATTAATTAAGAT 59.492 33.333 3.94 0.00 0.00 2.40
2924 3633 6.835488 AGCTTTGCCTCATCCATTAATTAAGA 59.165 34.615 3.94 0.00 0.00 2.10
2925 3634 7.047460 AGCTTTGCCTCATCCATTAATTAAG 57.953 36.000 3.94 0.00 0.00 1.85
2926 3635 7.422465 AAGCTTTGCCTCATCCATTAATTAA 57.578 32.000 0.00 0.00 0.00 1.40
2927 3636 7.422465 AAAGCTTTGCCTCATCCATTAATTA 57.578 32.000 11.80 0.00 0.00 1.40
2928 3637 5.945144 AAGCTTTGCCTCATCCATTAATT 57.055 34.783 0.00 0.00 0.00 1.40
2929 3638 5.945144 AAAGCTTTGCCTCATCCATTAAT 57.055 34.783 11.80 0.00 0.00 1.40
2930 3639 5.481105 CAAAAGCTTTGCCTCATCCATTAA 58.519 37.500 13.54 0.00 0.00 1.40
2931 3640 4.621274 GCAAAAGCTTTGCCTCATCCATTA 60.621 41.667 13.54 0.00 39.38 1.90
2932 3641 3.867216 GCAAAAGCTTTGCCTCATCCATT 60.867 43.478 13.54 0.00 39.38 3.16
2933 3642 2.354403 GCAAAAGCTTTGCCTCATCCAT 60.354 45.455 13.54 0.00 39.38 3.41
2934 3643 1.001181 GCAAAAGCTTTGCCTCATCCA 59.999 47.619 13.54 0.00 39.38 3.41
2935 3644 1.718396 GCAAAAGCTTTGCCTCATCC 58.282 50.000 13.54 0.00 39.38 3.51
2942 3651 0.249447 AACGGAGGCAAAAGCTTTGC 60.249 50.000 13.54 17.13 44.22 3.68
2943 3652 2.223537 AAACGGAGGCAAAAGCTTTG 57.776 45.000 13.54 8.26 0.00 2.77
2944 3653 4.394439 TTTAAACGGAGGCAAAAGCTTT 57.606 36.364 5.69 5.69 0.00 3.51
2945 3654 4.394439 TTTTAAACGGAGGCAAAAGCTT 57.606 36.364 0.00 0.00 0.00 3.74
2946 3655 4.394439 TTTTTAAACGGAGGCAAAAGCT 57.606 36.364 0.00 0.00 0.00 3.74
2968 3677 4.176271 GCAGTTGCTTGACAGAAGTTTTT 58.824 39.130 0.00 0.00 38.21 1.94
2969 3678 3.193267 TGCAGTTGCTTGACAGAAGTTTT 59.807 39.130 5.62 0.00 42.66 2.43
2970 3679 2.754552 TGCAGTTGCTTGACAGAAGTTT 59.245 40.909 5.62 0.00 42.66 2.66
2971 3680 2.098117 GTGCAGTTGCTTGACAGAAGTT 59.902 45.455 5.62 0.00 42.66 2.66
2972 3681 1.672881 GTGCAGTTGCTTGACAGAAGT 59.327 47.619 5.62 0.00 42.66 3.01
2973 3682 1.333524 CGTGCAGTTGCTTGACAGAAG 60.334 52.381 5.62 0.00 42.66 2.85
2974 3683 0.657312 CGTGCAGTTGCTTGACAGAA 59.343 50.000 5.62 0.00 42.66 3.02
2975 3684 1.775039 GCGTGCAGTTGCTTGACAGA 61.775 55.000 5.62 0.00 42.66 3.41
2976 3685 1.369689 GCGTGCAGTTGCTTGACAG 60.370 57.895 5.62 0.00 42.66 3.51
2987 3696 0.599991 TACACTGTTCTGGCGTGCAG 60.600 55.000 0.00 0.00 35.31 4.41
3039 3755 2.422597 TGCTACAGTTTAATGTGCGCT 58.577 42.857 9.73 0.00 34.20 5.92
3050 3766 6.220726 ACAGGATTTGTTTTTGCTACAGTT 57.779 33.333 0.00 0.00 36.31 3.16
3117 3835 2.357154 GGCATTAAGACCACCTCCATGT 60.357 50.000 0.00 0.00 0.00 3.21
3124 3842 0.107654 AGCGAGGCATTAAGACCACC 60.108 55.000 0.00 0.00 0.00 4.61
3185 3907 0.521735 GTCAATGCCCTTCGTTGTCC 59.478 55.000 0.00 0.00 41.36 4.02
3256 3979 2.743938 GACAGAAGTGAAGTCTTGCGA 58.256 47.619 0.00 0.00 0.00 5.10
3282 4005 9.816787 TGGTCCCAAAGTATTAAGTATTTTCTT 57.183 29.630 0.00 0.00 0.00 2.52
3323 4046 0.118346 ATACCCGGGCATGGATCCTA 59.882 55.000 24.08 1.45 0.00 2.94
3324 4047 0.118346 TATACCCGGGCATGGATCCT 59.882 55.000 24.08 0.00 0.00 3.24
3328 4051 1.777878 ACAAATATACCCGGGCATGGA 59.222 47.619 24.08 0.00 0.00 3.41
3363 4090 8.478066 GGAATGAGGGAGCAGTAAATTTAATTT 58.522 33.333 8.07 8.07 36.29 1.82
3411 4138 8.298030 ACTTAAGAAAAATTGATTTGCGAAGG 57.702 30.769 10.09 0.00 32.63 3.46
3717 4477 1.717194 GTGTCTCGACTCTCGACTCT 58.283 55.000 3.76 0.00 44.82 3.24
3729 4489 1.574702 GGGGAAAAAGGCGTGTCTCG 61.575 60.000 0.00 0.00 43.12 4.04
3737 4497 0.612174 GAGGGACAGGGGAAAAAGGC 60.612 60.000 0.00 0.00 0.00 4.35
3740 4500 2.178984 ACATTGAGGGACAGGGGAAAAA 59.821 45.455 0.00 0.00 0.00 1.94
3753 4513 3.193903 TGGTGATTCATGCAACATTGAGG 59.806 43.478 0.00 0.00 0.00 3.86
3935 4696 3.211045 TGTGTTGACTTTGGAACTAGCC 58.789 45.455 0.00 0.00 0.00 3.93
3949 4710 4.566545 AGCGATTTTTGTGATGTGTTGA 57.433 36.364 0.00 0.00 0.00 3.18
3955 4716 4.914312 ATTGCAAGCGATTTTTGTGATG 57.086 36.364 4.94 0.00 0.00 3.07
4012 4773 4.827087 AGCTCGTGCCATGCTCCG 62.827 66.667 5.73 0.00 40.80 4.63
4041 4802 7.342799 GGATCATCCTGCTTCTATCTTCTATCT 59.657 40.741 0.00 0.00 32.53 1.98
4091 4938 0.757561 TCCTGGGTCTGTTGTCGTGA 60.758 55.000 0.00 0.00 0.00 4.35
4120 4968 0.994247 TGAATCCCTGCATGGAGTGT 59.006 50.000 15.93 3.66 37.96 3.55
4121 4969 2.133281 TTGAATCCCTGCATGGAGTG 57.867 50.000 15.93 1.26 37.96 3.51
4122 4970 2.042162 ACTTTGAATCCCTGCATGGAGT 59.958 45.455 16.26 13.75 37.96 3.85
4123 4971 2.686915 GACTTTGAATCCCTGCATGGAG 59.313 50.000 16.26 7.35 37.96 3.86
4124 4972 2.621407 GGACTTTGAATCCCTGCATGGA 60.621 50.000 13.51 13.51 39.18 3.41
4140 4988 1.963172 GTCGGTTGACAAAGGGACTT 58.037 50.000 0.00 0.00 44.42 3.01
4161 5009 6.931838 TCCGTTGTTATTCTAAGTGTCTGAT 58.068 36.000 0.00 0.00 0.00 2.90
4164 5012 6.585695 TCTCCGTTGTTATTCTAAGTGTCT 57.414 37.500 0.00 0.00 0.00 3.41
4182 5030 4.338400 TGTTAGTGTGTATCCTCATCTCCG 59.662 45.833 0.00 0.00 0.00 4.63
4183 5031 5.854010 TGTTAGTGTGTATCCTCATCTCC 57.146 43.478 0.00 0.00 0.00 3.71
4193 5041 2.603110 CTCGCGCATTGTTAGTGTGTAT 59.397 45.455 8.75 0.00 0.00 2.29
4230 5078 1.491670 GATGATCACATCGTGACCGG 58.508 55.000 0.00 0.00 45.65 5.28
4270 5118 7.620880 AGACTATGGTAGCAACAAACTATCAA 58.379 34.615 0.00 0.00 34.53 2.57
4275 5123 5.865085 TGAAGACTATGGTAGCAACAAACT 58.135 37.500 0.00 0.00 0.00 2.66
4281 5129 4.443457 GCCTCATGAAGACTATGGTAGCAA 60.443 45.833 0.00 0.00 0.00 3.91
4335 5203 4.899352 ACAGAGGTTGCAATCTTCTACT 57.101 40.909 14.71 3.03 0.00 2.57
4336 5204 5.288543 CAACAGAGGTTGCAATCTTCTAC 57.711 43.478 14.71 0.34 46.98 2.59
4348 5216 3.898123 TGCTCTAAGAGTCAACAGAGGTT 59.102 43.478 14.11 0.00 35.98 3.50
4349 5217 3.501349 TGCTCTAAGAGTCAACAGAGGT 58.499 45.455 14.11 0.00 35.98 3.85
4350 5218 4.402155 AGATGCTCTAAGAGTCAACAGAGG 59.598 45.833 14.11 1.72 35.98 3.69
4351 5219 5.450412 GGAGATGCTCTAAGAGTCAACAGAG 60.450 48.000 9.97 9.97 38.04 3.35
4352 5220 4.400884 GGAGATGCTCTAAGAGTCAACAGA 59.599 45.833 0.00 0.00 31.39 3.41
4353 5221 4.159321 TGGAGATGCTCTAAGAGTCAACAG 59.841 45.833 0.00 0.00 31.39 3.16
4354 5222 4.089361 TGGAGATGCTCTAAGAGTCAACA 58.911 43.478 0.00 0.00 31.39 3.33
4355 5223 4.727507 TGGAGATGCTCTAAGAGTCAAC 57.272 45.455 0.00 0.00 31.39 3.18
4356 5224 4.528206 TGTTGGAGATGCTCTAAGAGTCAA 59.472 41.667 0.00 0.00 31.92 3.18
4357 5225 4.089361 TGTTGGAGATGCTCTAAGAGTCA 58.911 43.478 0.00 0.00 31.92 3.41
4358 5226 4.441356 CCTGTTGGAGATGCTCTAAGAGTC 60.441 50.000 13.74 0.00 39.47 3.36
4359 5227 3.450457 CCTGTTGGAGATGCTCTAAGAGT 59.550 47.826 13.74 0.00 39.47 3.24
4360 5228 3.740764 GCCTGTTGGAGATGCTCTAAGAG 60.741 52.174 9.68 9.68 40.30 2.85
4393 5261 1.837538 AAGCAGTTTTTAGCGCGCGA 61.838 50.000 37.18 19.65 35.48 5.87
4497 5374 1.893168 CTGCATTTTTGCGCACTGCC 61.893 55.000 22.82 11.09 45.60 4.85
5331 6247 0.609662 ATTGTCCAAAGGCATGGCAC 59.390 50.000 22.64 10.78 40.46 5.01
5355 6271 3.093814 AGATTGCATGCATTGGAGTTGA 58.906 40.909 23.37 2.83 0.00 3.18
5771 6689 1.529226 TGCCCACAACAGATTTACCG 58.471 50.000 0.00 0.00 0.00 4.02
5773 6691 3.006940 TCGATGCCCACAACAGATTTAC 58.993 45.455 0.00 0.00 0.00 2.01
5775 6693 2.198827 TCGATGCCCACAACAGATTT 57.801 45.000 0.00 0.00 0.00 2.17
6279 7315 0.876399 TATATAGTTCAGCGCGCGGA 59.124 50.000 33.06 29.74 0.00 5.54
6310 7346 4.166011 CAGCCGCGCCAAACTAGC 62.166 66.667 0.00 0.00 0.00 3.42
6311 7347 1.017177 TAACAGCCGCGCCAAACTAG 61.017 55.000 0.00 0.00 0.00 2.57
6312 7348 1.004799 TAACAGCCGCGCCAAACTA 60.005 52.632 0.00 0.00 0.00 2.24
6313 7349 2.281208 TAACAGCCGCGCCAAACT 60.281 55.556 0.00 0.00 0.00 2.66
6314 7350 2.175811 CTAACAGCCGCGCCAAAC 59.824 61.111 0.00 0.00 0.00 2.93
6315 7351 2.031314 TCTAACAGCCGCGCCAAA 59.969 55.556 0.00 0.00 0.00 3.28
6316 7352 2.238847 ATCTCTAACAGCCGCGCCAA 62.239 55.000 0.00 0.00 0.00 4.52
6317 7353 2.721167 ATCTCTAACAGCCGCGCCA 61.721 57.895 0.00 0.00 0.00 5.69
6318 7354 2.107141 ATCTCTAACAGCCGCGCC 59.893 61.111 0.00 0.00 0.00 6.53
6319 7355 2.875786 GCATCTCTAACAGCCGCGC 61.876 63.158 0.00 0.00 0.00 6.86
6320 7356 1.211818 GAGCATCTCTAACAGCCGCG 61.212 60.000 0.00 0.00 0.00 6.46
6321 7357 2.599216 GAGCATCTCTAACAGCCGC 58.401 57.895 0.00 0.00 0.00 6.53
6375 7411 3.060339 GCATTTGAACAAAAGCTTGACCG 60.060 43.478 16.55 0.00 40.58 4.79
6408 7444 2.003937 TGACCATGTAGGCGGCTATA 57.996 50.000 22.63 19.98 43.14 1.31
6418 7454 5.880164 TCCGGAATTTAGATGACCATGTA 57.120 39.130 0.00 0.00 0.00 2.29
6423 7459 6.097915 TCACTATCCGGAATTTAGATGACC 57.902 41.667 9.01 0.00 0.00 4.02
6427 7463 5.513267 GCCCTTCACTATCCGGAATTTAGAT 60.513 44.000 9.01 0.00 0.00 1.98
6430 7466 3.493699 CGCCCTTCACTATCCGGAATTTA 60.494 47.826 9.01 0.00 0.00 1.40
6435 7471 0.469331 ATCGCCCTTCACTATCCGGA 60.469 55.000 6.61 6.61 0.00 5.14
6437 7473 0.389391 ACATCGCCCTTCACTATCCG 59.611 55.000 0.00 0.00 0.00 4.18
6438 7474 1.139058 ACACATCGCCCTTCACTATCC 59.861 52.381 0.00 0.00 0.00 2.59
6459 7495 8.506168 TGAGTAATTATTTTCTGTGGATCCAC 57.494 34.615 33.97 33.97 46.33 4.02
6489 7525 1.774254 TCCACCACTGAACTTCACCAT 59.226 47.619 0.00 0.00 0.00 3.55
6493 7529 1.131638 AGCTCCACCACTGAACTTCA 58.868 50.000 0.00 0.00 0.00 3.02
6505 7541 1.529865 GTTTTGGTCGTGTAGCTCCAC 59.470 52.381 0.00 0.00 0.00 4.02
6524 7560 1.549170 CTTTGTACTAGCCCGTCCAGT 59.451 52.381 0.00 0.00 0.00 4.00
6525 7561 1.134788 CCTTTGTACTAGCCCGTCCAG 60.135 57.143 0.00 0.00 0.00 3.86
6529 7565 1.553704 CCTTCCTTTGTACTAGCCCGT 59.446 52.381 0.00 0.00 0.00 5.28
6572 7608 5.261216 AGTGTGGTATTGAGGGTAAATTGG 58.739 41.667 0.00 0.00 0.00 3.16
6575 7611 7.208064 ACATAGTGTGGTATTGAGGGTAAAT 57.792 36.000 0.00 0.00 0.00 1.40
6581 7617 4.943705 AGCAAACATAGTGTGGTATTGAGG 59.056 41.667 6.53 0.00 29.00 3.86
6620 7663 3.408634 ACGTGTTAGGAAAATGGGTCAG 58.591 45.455 0.00 0.00 0.00 3.51
6623 7666 3.008704 AGCTACGTGTTAGGAAAATGGGT 59.991 43.478 0.00 0.00 0.00 4.51
6692 7736 7.481642 TGTTTAAAGCACGAGGAACAAATTTA 58.518 30.769 0.00 0.00 0.00 1.40
6695 7739 5.508200 TGTTTAAAGCACGAGGAACAAAT 57.492 34.783 0.00 0.00 0.00 2.32
6696 7740 4.966965 TGTTTAAAGCACGAGGAACAAA 57.033 36.364 0.00 0.00 0.00 2.83
6765 7809 9.312904 CATAATGTTCTAAAATACCATGGGGAT 57.687 33.333 18.09 6.11 38.05 3.85
6791 7835 1.757699 ACCTTTCGGTGATCTAGCTCC 59.242 52.381 0.00 0.00 43.51 4.70
6835 7879 2.284625 AGTCCCCATCAGACGGCA 60.285 61.111 0.00 0.00 39.31 5.69
6836 7880 2.187946 CAGTCCCCATCAGACGGC 59.812 66.667 0.00 0.00 39.31 5.68
6853 7897 9.553064 AATCCTAAGTGATGATAATGTTGAGAC 57.447 33.333 0.00 0.00 0.00 3.36
6868 7944 3.451178 GCACCACTCCTAATCCTAAGTGA 59.549 47.826 3.06 0.00 41.26 3.41
6869 7945 3.738281 CGCACCACTCCTAATCCTAAGTG 60.738 52.174 0.00 0.00 39.04 3.16
6870 7946 2.431057 CGCACCACTCCTAATCCTAAGT 59.569 50.000 0.00 0.00 0.00 2.24
6871 7947 2.431057 ACGCACCACTCCTAATCCTAAG 59.569 50.000 0.00 0.00 0.00 2.18
6872 7948 2.167693 CACGCACCACTCCTAATCCTAA 59.832 50.000 0.00 0.00 0.00 2.69
6873 7949 1.754803 CACGCACCACTCCTAATCCTA 59.245 52.381 0.00 0.00 0.00 2.94
6874 7950 0.537188 CACGCACCACTCCTAATCCT 59.463 55.000 0.00 0.00 0.00 3.24
6875 7951 0.535335 TCACGCACCACTCCTAATCC 59.465 55.000 0.00 0.00 0.00 3.01
6876 7952 2.159099 TCATCACGCACCACTCCTAATC 60.159 50.000 0.00 0.00 0.00 1.75
6877 7953 1.831106 TCATCACGCACCACTCCTAAT 59.169 47.619 0.00 0.00 0.00 1.73
6884 7960 2.774439 AAACTTTCATCACGCACCAC 57.226 45.000 0.00 0.00 0.00 4.16
6892 7968 3.066621 AGCGTGCAAGAAAACTTTCATCA 59.933 39.130 2.99 0.00 39.61 3.07
6913 7989 1.993370 CGGCCTTCTCTCGTACAAAAG 59.007 52.381 0.00 0.00 0.00 2.27
6929 8005 4.120331 GCTGCACATTGGACGGCC 62.120 66.667 0.00 0.00 0.00 6.13
7027 8116 0.381801 CAACAGGTGGAGTGCACAAC 59.618 55.000 21.04 13.75 0.00 3.32
7217 8611 1.540267 TGGAGCTAGACAGACACGTTC 59.460 52.381 0.00 0.00 0.00 3.95
7786 9186 3.819877 GACAAACCGCCCGTGGAGT 62.820 63.158 0.24 0.00 0.00 3.85
7801 9201 1.291184 CGTTCATGAGCTTGGCGACA 61.291 55.000 8.01 0.00 39.83 4.35
8180 9588 1.467342 GTGGCCCAGTCGAAATTGTAC 59.533 52.381 0.00 0.00 0.00 2.90
8247 9655 1.820056 CATGCAGCAGCTCCTCCAG 60.820 63.158 0.00 0.00 42.74 3.86
8331 9739 0.960861 GTGGCAAACTCCAGGTAGCC 60.961 60.000 0.00 0.00 44.45 3.93
8415 9823 6.200286 TCTCACACTCGAAAAAGTACAATGTC 59.800 38.462 0.00 0.00 0.00 3.06
8416 9824 6.018994 GTCTCACACTCGAAAAAGTACAATGT 60.019 38.462 0.00 0.00 0.00 2.71
8477 9886 1.065551 GAAGTTAATGGGCATGACCGC 59.934 52.381 14.43 0.18 40.62 5.68
8593 10002 2.969628 AGGGACTGCGAGTTGAATAG 57.030 50.000 0.00 0.00 37.18 1.73
8726 10135 3.977427 GCCGAATAAAATTAAGGCCCAG 58.023 45.455 0.00 0.00 38.72 4.45
8809 10218 3.459063 GCCGTACCCCGAGCTCTT 61.459 66.667 12.85 0.00 39.56 2.85
9159 10575 2.238395 CCCTTCTCCCTCTCCTTTCTTG 59.762 54.545 0.00 0.00 0.00 3.02
9381 10799 3.691118 TGATTACCAACTCAAGCAGCATC 59.309 43.478 0.00 0.00 0.00 3.91
9418 10847 7.170393 TCAGTATATCGGATAAATCACCCAG 57.830 40.000 1.16 0.00 0.00 4.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.