Multiple sequence alignment - TraesCS4D01G100100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G100100 chr4D 100.000 3454 0 0 1 3454 77122893 77126346 0.000000e+00 6379.0
1 TraesCS4D01G100100 chr4D 76.596 141 29 4 1056 1194 441639214 441639076 1.330000e-09 75.0
2 TraesCS4D01G100100 chr4B 90.218 2433 190 27 772 3184 109226774 109229178 0.000000e+00 3131.0
3 TraesCS4D01G100100 chr4B 84.767 709 45 10 39 743 480829165 480828516 0.000000e+00 652.0
4 TraesCS4D01G100100 chr1A 91.690 710 37 9 39 743 592653485 592652793 0.000000e+00 965.0
5 TraesCS4D01G100100 chr2D 91.643 706 33 14 39 743 558909168 558908488 0.000000e+00 953.0
6 TraesCS4D01G100100 chr1D 91.501 706 38 11 39 743 481727734 481728418 0.000000e+00 952.0
7 TraesCS4D01G100100 chr5A 90.652 706 46 8 39 743 666819162 666818476 0.000000e+00 920.0
8 TraesCS4D01G100100 chr5D 90.483 704 35 10 39 741 396443415 396442743 0.000000e+00 900.0
9 TraesCS4D01G100100 chr5D 94.737 247 12 1 497 743 398517017 398516772 1.940000e-102 383.0
10 TraesCS4D01G100100 chr7A 90.476 462 27 8 282 743 161726960 161726516 8.250000e-166 593.0
11 TraesCS4D01G100100 chr7B 89.806 412 20 4 267 675 732627716 732628108 3.080000e-140 508.0
12 TraesCS4D01G100100 chr1B 87.692 390 29 9 354 743 292409423 292409053 1.470000e-118 436.0
13 TraesCS4D01G100100 chr1B 91.946 298 19 5 39 335 292409701 292409408 2.480000e-111 412.0
14 TraesCS4D01G100100 chr1B 90.604 298 23 5 39 335 292338250 292337957 1.160000e-104 390.0
15 TraesCS4D01G100100 chr3A 83.133 498 44 20 79 571 721361444 721360982 5.330000e-113 418.0
16 TraesCS4D01G100100 chr3A 89.796 49 5 0 227 275 726360194 726360242 2.880000e-06 63.9
17 TraesCS4D01G100100 chr6B 81.481 135 25 0 1049 1183 69720025 69719891 1.010000e-20 111.0
18 TraesCS4D01G100100 chr6B 100.000 29 0 0 2146 2174 69958107 69958079 2.000000e-03 54.7
19 TraesCS4D01G100100 chr6D 80.000 105 21 0 1079 1183 33253263 33253159 1.030000e-10 78.7
20 TraesCS4D01G100100 chr6D 78.761 113 22 2 1049 1160 33312448 33312337 1.330000e-09 75.0
21 TraesCS4D01G100100 chr6D 85.507 69 10 0 1115 1183 34323611 34323543 4.780000e-09 73.1
22 TraesCS4D01G100100 chr4A 79.439 107 20 2 1056 1161 25802978 25803083 1.330000e-09 75.0
23 TraesCS4D01G100100 chr4A 85.294 68 8 2 1118 1184 26012707 26012773 6.190000e-08 69.4
24 TraesCS4D01G100100 chr6A 87.302 63 8 0 1121 1183 37845496 37845434 4.780000e-09 73.1
25 TraesCS4D01G100100 chr6A 100.000 29 0 0 2146 2174 37707360 37707332 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G100100 chr4D 77122893 77126346 3453 False 6379 6379 100.000 1 3454 1 chr4D.!!$F1 3453
1 TraesCS4D01G100100 chr4B 109226774 109229178 2404 False 3131 3131 90.218 772 3184 1 chr4B.!!$F1 2412
2 TraesCS4D01G100100 chr4B 480828516 480829165 649 True 652 652 84.767 39 743 1 chr4B.!!$R1 704
3 TraesCS4D01G100100 chr1A 592652793 592653485 692 True 965 965 91.690 39 743 1 chr1A.!!$R1 704
4 TraesCS4D01G100100 chr2D 558908488 558909168 680 True 953 953 91.643 39 743 1 chr2D.!!$R1 704
5 TraesCS4D01G100100 chr1D 481727734 481728418 684 False 952 952 91.501 39 743 1 chr1D.!!$F1 704
6 TraesCS4D01G100100 chr5A 666818476 666819162 686 True 920 920 90.652 39 743 1 chr5A.!!$R1 704
7 TraesCS4D01G100100 chr5D 396442743 396443415 672 True 900 900 90.483 39 741 1 chr5D.!!$R1 702
8 TraesCS4D01G100100 chr1B 292409053 292409701 648 True 424 436 89.819 39 743 2 chr1B.!!$R2 704

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
21 22 0.109735 GTTTAACCTGCGCTGAAGGC 60.110 55.0 16.65 0.0 38.48 4.35 F
1029 1045 0.040067 GGCTCAAGACCACAAAAGCG 60.040 55.0 0.00 0.0 0.00 4.68 F
1527 1549 0.040958 CAAGCTGCTCGGTGTTGAAC 60.041 55.0 1.00 0.0 0.00 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1266 1282 0.025898 CGAACTCGCACTCGTCGATA 59.974 55.0 0.0 0.0 34.87 2.92 R
1854 1876 0.036732 TGGACAGACCCACAAGATGC 59.963 55.0 0.0 0.0 38.00 3.91 R
2616 2639 0.100503 GTTGCATGACAATACCGGCC 59.899 55.0 0.0 0.0 41.27 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.234821 TGTTTAACCTGCGCTGAAGG 58.765 50.000 16.65 13.41 40.93 3.46
21 22 0.109735 GTTTAACCTGCGCTGAAGGC 60.110 55.000 16.65 0.00 38.48 4.35
31 32 4.899239 CTGAAGGCGCCGGCTAGG 62.899 72.222 26.68 10.55 37.50 3.02
65 66 0.178973 CCCCCTCTTTGGACGGTTTT 60.179 55.000 0.00 0.00 38.35 2.43
83 84 4.142859 GGTTTTGTTTCCCCGTTGAAAAAC 60.143 41.667 0.00 0.00 36.09 2.43
212 213 2.708514 CGCACCTAAGCAATCGATTTG 58.291 47.619 8.21 3.61 38.43 2.32
277 279 2.005960 CTAACGGCCAGGGAGTCGAG 62.006 65.000 2.24 0.00 0.00 4.04
285 287 1.337260 CCAGGGAGTCGAGTGAGTTTG 60.337 57.143 0.00 0.00 0.00 2.93
417 424 6.515272 ACTGAAGAACAAAAAGACACACAT 57.485 33.333 0.00 0.00 0.00 3.21
458 465 3.325425 TGTTCGTTCCCATCCTGTAGAAA 59.675 43.478 0.00 0.00 0.00 2.52
459 466 4.202377 TGTTCGTTCCCATCCTGTAGAAAA 60.202 41.667 0.00 0.00 0.00 2.29
460 467 3.934068 TCGTTCCCATCCTGTAGAAAAC 58.066 45.455 0.00 0.00 0.00 2.43
461 468 3.325425 TCGTTCCCATCCTGTAGAAAACA 59.675 43.478 0.00 0.00 36.42 2.83
462 469 4.069304 CGTTCCCATCCTGTAGAAAACAA 58.931 43.478 0.00 0.00 37.74 2.83
463 470 4.700213 CGTTCCCATCCTGTAGAAAACAAT 59.300 41.667 0.00 0.00 37.74 2.71
464 471 5.163754 CGTTCCCATCCTGTAGAAAACAATC 60.164 44.000 0.00 0.00 37.74 2.67
465 472 5.512942 TCCCATCCTGTAGAAAACAATCA 57.487 39.130 0.00 0.00 37.74 2.57
466 473 5.886609 TCCCATCCTGTAGAAAACAATCAA 58.113 37.500 0.00 0.00 37.74 2.57
467 474 6.493166 TCCCATCCTGTAGAAAACAATCAAT 58.507 36.000 0.00 0.00 37.74 2.57
468 475 6.603201 TCCCATCCTGTAGAAAACAATCAATC 59.397 38.462 0.00 0.00 37.74 2.67
469 476 6.183360 CCCATCCTGTAGAAAACAATCAATCC 60.183 42.308 0.00 0.00 37.74 3.01
470 477 6.183360 CCATCCTGTAGAAAACAATCAATCCC 60.183 42.308 0.00 0.00 37.74 3.85
471 478 6.139679 TCCTGTAGAAAACAATCAATCCCT 57.860 37.500 0.00 0.00 37.74 4.20
472 479 6.180472 TCCTGTAGAAAACAATCAATCCCTC 58.820 40.000 0.00 0.00 37.74 4.30
473 480 5.945784 CCTGTAGAAAACAATCAATCCCTCA 59.054 40.000 0.00 0.00 37.74 3.86
515 525 3.842436 AGGAACGGACCTAAACCTTGTAT 59.158 43.478 0.83 0.00 38.65 2.29
535 545 7.216973 TGTATAACAACCGGCAAAATAAAGT 57.783 32.000 0.00 0.00 0.00 2.66
537 547 4.929819 AACAACCGGCAAAATAAAGTCT 57.070 36.364 0.00 0.00 0.00 3.24
641 655 1.201424 ACCCCAGTTCGTTCCCTATC 58.799 55.000 0.00 0.00 0.00 2.08
718 732 3.581755 TCTAAGGGTCAACAAATCGACG 58.418 45.455 0.00 0.00 32.74 5.12
743 757 6.309251 GGAGACTTCACTAAAAATCAGTCGAG 59.691 42.308 0.00 0.00 36.56 4.04
744 758 6.982852 AGACTTCACTAAAAATCAGTCGAGA 58.017 36.000 0.00 0.00 36.56 4.04
745 759 7.434492 AGACTTCACTAAAAATCAGTCGAGAA 58.566 34.615 0.00 0.00 36.56 2.87
746 760 7.382759 AGACTTCACTAAAAATCAGTCGAGAAC 59.617 37.037 0.00 0.00 36.56 3.01
747 761 6.424207 ACTTCACTAAAAATCAGTCGAGAACC 59.576 38.462 0.00 0.00 0.00 3.62
748 762 5.235516 TCACTAAAAATCAGTCGAGAACCC 58.764 41.667 0.00 0.00 0.00 4.11
749 763 4.994852 CACTAAAAATCAGTCGAGAACCCA 59.005 41.667 0.00 0.00 0.00 4.51
750 764 5.468746 CACTAAAAATCAGTCGAGAACCCAA 59.531 40.000 0.00 0.00 0.00 4.12
751 765 6.017440 CACTAAAAATCAGTCGAGAACCCAAA 60.017 38.462 0.00 0.00 0.00 3.28
752 766 5.438761 AAAAATCAGTCGAGAACCCAAAG 57.561 39.130 0.00 0.00 0.00 2.77
753 767 4.351874 AAATCAGTCGAGAACCCAAAGA 57.648 40.909 0.00 0.00 0.00 2.52
754 768 4.351874 AATCAGTCGAGAACCCAAAGAA 57.648 40.909 0.00 0.00 0.00 2.52
755 769 3.386768 TCAGTCGAGAACCCAAAGAAG 57.613 47.619 0.00 0.00 0.00 2.85
756 770 2.037251 TCAGTCGAGAACCCAAAGAAGG 59.963 50.000 0.00 0.00 0.00 3.46
757 771 1.157585 GTCGAGAACCCAAAGAAGGC 58.842 55.000 0.00 0.00 0.00 4.35
758 772 0.762418 TCGAGAACCCAAAGAAGGCA 59.238 50.000 0.00 0.00 0.00 4.75
759 773 1.142060 TCGAGAACCCAAAGAAGGCAA 59.858 47.619 0.00 0.00 0.00 4.52
760 774 1.953686 CGAGAACCCAAAGAAGGCAAA 59.046 47.619 0.00 0.00 0.00 3.68
761 775 2.030805 CGAGAACCCAAAGAAGGCAAAG 60.031 50.000 0.00 0.00 0.00 2.77
762 776 2.297315 GAGAACCCAAAGAAGGCAAAGG 59.703 50.000 0.00 0.00 0.00 3.11
763 777 2.091333 AGAACCCAAAGAAGGCAAAGGA 60.091 45.455 0.00 0.00 0.00 3.36
764 778 2.001076 ACCCAAAGAAGGCAAAGGAG 57.999 50.000 0.00 0.00 0.00 3.69
765 779 1.499007 ACCCAAAGAAGGCAAAGGAGA 59.501 47.619 0.00 0.00 0.00 3.71
766 780 2.165998 CCCAAAGAAGGCAAAGGAGAG 58.834 52.381 0.00 0.00 0.00 3.20
767 781 2.224867 CCCAAAGAAGGCAAAGGAGAGA 60.225 50.000 0.00 0.00 0.00 3.10
768 782 3.080319 CCAAAGAAGGCAAAGGAGAGAG 58.920 50.000 0.00 0.00 0.00 3.20
769 783 2.487372 CAAAGAAGGCAAAGGAGAGAGC 59.513 50.000 0.00 0.00 0.00 4.09
786 800 3.314331 CCAGAGAGGCACACGGGT 61.314 66.667 0.00 0.00 0.00 5.28
819 833 1.746220 CTGTCGTCTTCTTCCTCCGAT 59.254 52.381 0.00 0.00 0.00 4.18
820 834 2.164624 CTGTCGTCTTCTTCCTCCGATT 59.835 50.000 0.00 0.00 0.00 3.34
835 850 0.804544 CGATTACTCTTTGCCGCCGA 60.805 55.000 0.00 0.00 0.00 5.54
879 894 3.318017 CCAGTAAGGTGAAGTCGTCTTG 58.682 50.000 0.00 0.00 33.64 3.02
881 896 3.005472 CAGTAAGGTGAAGTCGTCTTGGA 59.995 47.826 0.00 0.00 33.64 3.53
882 897 2.821991 AAGGTGAAGTCGTCTTGGAG 57.178 50.000 0.00 0.00 33.64 3.86
883 898 0.318762 AGGTGAAGTCGTCTTGGAGC 59.681 55.000 0.00 0.00 33.64 4.70
913 929 0.881796 CCCTTCTGTTCCCGCTTTTC 59.118 55.000 0.00 0.00 0.00 2.29
914 930 1.545651 CCCTTCTGTTCCCGCTTTTCT 60.546 52.381 0.00 0.00 0.00 2.52
922 938 3.249080 TGTTCCCGCTTTTCTTTAACGAG 59.751 43.478 0.00 0.00 0.00 4.18
927 943 2.720891 CGCTTTTCTTTAACGAGCCGTC 60.721 50.000 0.69 0.00 39.99 4.79
940 956 4.367023 CCGTCCCGCTTCGTTCCA 62.367 66.667 0.00 0.00 0.00 3.53
955 971 4.690719 CCAGTTGCCGCACCCGTA 62.691 66.667 0.00 0.00 0.00 4.02
969 985 2.879462 CGTAGGTCGTTGCTCCGC 60.879 66.667 0.00 0.00 34.52 5.54
1013 1029 1.675641 GCCAAATGTCTCACCGGCT 60.676 57.895 0.00 0.00 36.58 5.52
1025 1041 0.817634 CACCGGCTCAAGACCACAAA 60.818 55.000 0.00 0.00 0.00 2.83
1026 1042 0.106918 ACCGGCTCAAGACCACAAAA 60.107 50.000 0.00 0.00 0.00 2.44
1029 1045 0.040067 GGCTCAAGACCACAAAAGCG 60.040 55.000 0.00 0.00 0.00 4.68
1035 1051 3.573489 GACCACAAAAGCGTCGCCG 62.573 63.158 14.86 2.67 37.07 6.46
1106 1122 2.694760 CGCTTGGCTTCCTTGAGGC 61.695 63.158 0.00 0.00 42.15 4.70
1109 1125 3.249805 TGGCTTCCTTGAGGCACA 58.750 55.556 0.60 0.00 45.91 4.57
1230 1246 2.154007 CGAGAAGCTGAACGAGTTTGTC 59.846 50.000 0.00 0.00 33.35 3.18
1240 1256 3.588277 GAGTTTGTCGACCAGCTGA 57.412 52.632 17.39 0.00 0.00 4.26
1241 1257 1.140816 GAGTTTGTCGACCAGCTGAC 58.859 55.000 17.39 5.73 35.67 3.51
1251 1267 3.385384 CAGCTGACTCTGCCCCGA 61.385 66.667 8.42 0.00 0.00 5.14
1267 1283 3.138798 GAGACCGCGGCTCCACTA 61.139 66.667 28.58 0.00 0.00 2.74
1269 1285 2.027751 GACCGCGGCTCCACTATC 59.972 66.667 28.58 8.97 0.00 2.08
1284 1300 1.062294 ACTATCGACGAGTGCGAGTTC 59.938 52.381 3.01 0.00 41.49 3.01
1293 1309 1.136984 GTGCGAGTTCGATCTCCGT 59.863 57.895 16.05 0.00 43.02 4.69
1299 1315 1.747355 GAGTTCGATCTCCGTGGGTTA 59.253 52.381 11.73 0.00 39.75 2.85
1304 1320 1.472552 CGATCTCCGTGGGTTATTGCA 60.473 52.381 0.00 0.00 0.00 4.08
1305 1321 2.639065 GATCTCCGTGGGTTATTGCAA 58.361 47.619 0.00 0.00 0.00 4.08
1308 1324 2.159382 CTCCGTGGGTTATTGCAACTT 58.841 47.619 0.00 0.00 0.00 2.66
1319 1335 0.746204 TTGCAACTTGAGGACGCACA 60.746 50.000 0.00 0.00 31.10 4.57
1320 1336 0.534877 TGCAACTTGAGGACGCACAT 60.535 50.000 0.00 0.00 0.00 3.21
1321 1337 0.110056 GCAACTTGAGGACGCACATG 60.110 55.000 0.00 0.00 0.00 3.21
1328 1344 0.320771 GAGGACGCACATGTTGACCT 60.321 55.000 15.59 15.59 0.00 3.85
1335 1351 2.440409 GCACATGTTGACCTCTGGATT 58.560 47.619 0.00 0.00 0.00 3.01
1338 1354 2.283298 CATGTTGACCTCTGGATTCGG 58.717 52.381 0.00 0.00 0.00 4.30
1360 1376 2.664424 CGTGTTTTGAAGTGCCATACCG 60.664 50.000 0.00 0.00 0.00 4.02
1377 1393 1.221840 CGGGCTGCTACAAGTCCAT 59.778 57.895 0.00 0.00 42.47 3.41
1384 1400 3.793801 GCTGCTACAAGTCCATCTCTACG 60.794 52.174 0.00 0.00 0.00 3.51
1402 1418 1.409427 ACGCTAATCTACCAGCCACTC 59.591 52.381 0.00 0.00 34.15 3.51
1403 1419 1.409064 CGCTAATCTACCAGCCACTCA 59.591 52.381 0.00 0.00 34.15 3.41
1404 1420 2.544694 CGCTAATCTACCAGCCACTCAG 60.545 54.545 0.00 0.00 34.15 3.35
1406 1422 1.207791 AATCTACCAGCCACTCAGGG 58.792 55.000 0.00 0.00 38.09 4.45
1407 1423 0.339859 ATCTACCAGCCACTCAGGGA 59.660 55.000 0.00 0.00 38.09 4.20
1413 1429 0.911769 CAGCCACTCAGGGACCATTA 59.088 55.000 0.00 0.00 38.09 1.90
1414 1430 1.281867 CAGCCACTCAGGGACCATTAA 59.718 52.381 0.00 0.00 38.09 1.40
1421 1443 3.133003 ACTCAGGGACCATTAATCGTCAG 59.867 47.826 14.10 6.23 0.00 3.51
1427 1449 3.132289 GGACCATTAATCGTCAGACTGGA 59.868 47.826 14.10 0.00 0.00 3.86
1431 1453 5.118990 CCATTAATCGTCAGACTGGACAAT 58.881 41.667 1.81 0.00 37.66 2.71
1448 1470 1.410882 CAATCGACCTCTCTTCTCCCC 59.589 57.143 0.00 0.00 0.00 4.81
1476 1498 1.486310 TGGCGATTAGAGCTCAATGGT 59.514 47.619 17.77 0.00 34.52 3.55
1477 1499 1.869767 GGCGATTAGAGCTCAATGGTG 59.130 52.381 17.77 1.97 34.52 4.17
1481 1503 4.437239 CGATTAGAGCTCAATGGTGTCTT 58.563 43.478 17.77 0.00 0.00 3.01
1490 1512 4.645535 CTCAATGGTGTCTTCTTGGAAGA 58.354 43.478 5.96 5.96 0.00 2.87
1492 1514 6.373005 TCAATGGTGTCTTCTTGGAAGATA 57.627 37.500 12.22 7.73 34.49 1.98
1509 1531 6.209192 TGGAAGATAGCTTGCTTGATTTTTCA 59.791 34.615 13.56 0.00 42.33 2.69
1527 1549 0.040958 CAAGCTGCTCGGTGTTGAAC 60.041 55.000 1.00 0.00 0.00 3.18
1533 1555 1.542472 TGCTCGGTGTTGAACGATCTA 59.458 47.619 0.00 0.00 38.56 1.98
1534 1556 2.186076 GCTCGGTGTTGAACGATCTAG 58.814 52.381 0.00 0.00 38.56 2.43
1555 1577 7.643579 TCTAGAGATCACTAATTGTGTCATCG 58.356 38.462 1.41 0.00 46.27 3.84
1556 1578 6.456795 AGAGATCACTAATTGTGTCATCGA 57.543 37.500 0.00 0.00 46.27 3.59
1566 1588 8.363390 ACTAATTGTGTCATCGATACTGATCAT 58.637 33.333 0.00 0.00 31.78 2.45
1570 1592 7.693969 TGTGTCATCGATACTGATCATATCT 57.306 36.000 16.41 3.94 31.78 1.98
1588 1610 7.181361 TCATATCTTGTCCCAATCCTTGAAAA 58.819 34.615 0.00 0.00 0.00 2.29
1622 1644 1.370900 GCTGTGAGCTTTGTTGGCG 60.371 57.895 0.00 0.00 38.45 5.69
1624 1646 0.040958 CTGTGAGCTTTGTTGGCGAC 60.041 55.000 0.00 0.00 34.52 5.19
1626 1648 0.663153 GTGAGCTTTGTTGGCGACTT 59.337 50.000 6.41 0.00 34.52 3.01
1638 1660 0.670854 GGCGACTTCACCCAACTCTC 60.671 60.000 0.00 0.00 0.00 3.20
1672 1694 5.412594 CCAAGTCTTATTTCACTGCAGCTAA 59.587 40.000 15.27 5.32 0.00 3.09
1713 1735 0.169672 CAGTCCTTGAAAGCATGCCG 59.830 55.000 15.66 0.00 0.00 5.69
1716 1738 1.810151 GTCCTTGAAAGCATGCCGTTA 59.190 47.619 15.66 0.00 0.00 3.18
1725 1747 3.328382 AGCATGCCGTTACTAGAAACA 57.672 42.857 15.66 0.00 0.00 2.83
1746 1768 1.336240 GCAACTGTGAATCTTGGCCAC 60.336 52.381 3.88 0.00 0.00 5.01
1749 1771 1.171308 CTGTGAATCTTGGCCACCAG 58.829 55.000 3.88 0.00 33.81 4.00
1761 1783 1.678101 GGCCACCAGAATGAGCAATAC 59.322 52.381 0.00 0.00 39.69 1.89
1845 1867 5.306937 TCCAGACAATGATTATACACCCGAT 59.693 40.000 0.00 0.00 0.00 4.18
1854 1876 4.649088 TTATACACCCGATGTCTCTGTG 57.351 45.455 0.00 0.00 42.09 3.66
1861 1883 1.931841 CCGATGTCTCTGTGCATCTTG 59.068 52.381 0.00 0.00 39.30 3.02
1872 1894 0.036732 TGCATCTTGTGGGTCTGTCC 59.963 55.000 0.00 0.00 0.00 4.02
1875 1897 0.326264 ATCTTGTGGGTCTGTCCAGC 59.674 55.000 0.00 0.00 37.50 4.85
1877 1899 2.383245 CTTGTGGGTCTGTCCAGCGT 62.383 60.000 0.00 0.00 37.50 5.07
1906 1928 6.957631 TGTTTGGAATTGATAGCTTCCTCTA 58.042 36.000 0.00 0.00 41.29 2.43
1930 1952 4.644103 ATGGTATGCTTGCAGTTCATTC 57.356 40.909 0.87 0.00 0.00 2.67
1963 1986 6.587206 TGTTCAAATTTCATATCCACTGCA 57.413 33.333 0.00 0.00 0.00 4.41
1969 1992 9.134055 TCAAATTTCATATCCACTGCATTATCA 57.866 29.630 0.00 0.00 0.00 2.15
2037 2060 4.037446 GTGCTTTCCACAGGTTACATTCAA 59.963 41.667 0.00 0.00 44.06 2.69
2049 2072 6.434028 CAGGTTACATTCAAAAGGGATCTTCA 59.566 38.462 0.00 0.00 31.82 3.02
2056 2079 6.515272 TTCAAAAGGGATCTTCAATACTGC 57.485 37.500 0.00 0.00 31.82 4.40
2116 2139 5.031066 ACTGGTGTTTAGTTGCTGACTTA 57.969 39.130 0.00 0.00 39.86 2.24
2128 2151 6.812998 AGTTGCTGACTTACAAACACTACTA 58.187 36.000 0.00 0.00 33.92 1.82
2129 2152 6.700520 AGTTGCTGACTTACAAACACTACTAC 59.299 38.462 0.00 0.00 33.92 2.73
2144 2167 6.618811 ACACTACTACACTTTCTCCATTACG 58.381 40.000 0.00 0.00 0.00 3.18
2150 2173 2.416547 CACTTTCTCCATTACGCACCAG 59.583 50.000 0.00 0.00 0.00 4.00
2180 2203 6.547880 AGAGAAACTCACTCTTCAAGTCTGTA 59.452 38.462 0.00 0.00 41.20 2.74
2222 2245 9.547753 CTAAGTAAGTATGATGTGTATTGCCTT 57.452 33.333 0.00 0.00 0.00 4.35
2234 2257 7.566760 TGTGTATTGCCTTTATGGAACTATG 57.433 36.000 0.00 0.00 38.35 2.23
2252 2275 9.730705 GGAACTATGATCCATGATTGATCTTTA 57.269 33.333 7.85 0.72 39.48 1.85
2297 2320 8.015185 AGAAACCCAAATCAGATATGGAATTG 57.985 34.615 0.00 0.00 36.27 2.32
2305 2328 5.128033 TCAGATATGGAATTGGAAGGCAA 57.872 39.130 0.00 0.00 0.00 4.52
2347 2370 5.491982 CCTTGTGCTGAAGTACCTTAAGAT 58.508 41.667 3.36 0.00 0.00 2.40
2391 2414 6.775939 TGATTGACGAGCAGATTCATAATC 57.224 37.500 0.00 0.00 38.20 1.75
2401 2424 7.850003 CGAGCAGATTCATAATCTTTTGAAGAC 59.150 37.037 0.00 0.97 45.75 3.01
2454 2477 7.814587 AGAAAATTAATGTCCAAAAGCTGTAGC 59.185 33.333 0.00 0.00 42.49 3.58
2459 2482 4.079980 TGTCCAAAAGCTGTAGCAAGTA 57.920 40.909 6.65 0.00 45.16 2.24
2535 2558 5.754890 GCAAACAATGAAAACCTGTCTTGAT 59.245 36.000 0.00 0.00 0.00 2.57
2537 2560 7.115378 GCAAACAATGAAAACCTGTCTTGATAG 59.885 37.037 0.00 0.00 0.00 2.08
2570 2593 7.231467 AGTGTTAGTTACAGACATCCCAATTT 58.769 34.615 0.00 0.00 37.45 1.82
2571 2594 7.724061 AGTGTTAGTTACAGACATCCCAATTTT 59.276 33.333 0.00 0.00 37.45 1.82
2589 2612 2.891191 TTGTTCCATGGTAGAACCCC 57.109 50.000 12.58 0.00 42.41 4.95
2616 2639 7.867403 AGCACTTTGTGATAAACTTATTTGTGG 59.133 33.333 1.52 0.00 35.23 4.17
2620 2643 4.156922 TGTGATAAACTTATTTGTGGGCCG 59.843 41.667 0.00 0.00 0.00 6.13
2622 2645 2.003937 AAACTTATTTGTGGGCCGGT 57.996 45.000 1.90 0.00 0.00 5.28
2649 2675 6.035217 TGTCATGCAACAAAAATATGATCGG 58.965 36.000 0.00 0.00 31.28 4.18
2665 2691 4.871513 TGATCGGTAAGATGATGTACAGC 58.128 43.478 3.61 3.61 40.26 4.40
2677 2703 4.797471 TGATGTACAGCTGTTTGATTTGC 58.203 39.130 27.06 1.62 0.00 3.68
2686 2712 5.865013 CAGCTGTTTGATTTGCATTATGACA 59.135 36.000 5.25 0.00 0.00 3.58
2777 2803 8.565896 TTCTGTGTTTTGAGTCATAGCATTAT 57.434 30.769 3.65 0.00 0.00 1.28
2786 2812 8.800370 TTGAGTCATAGCATTATTTTGTACCA 57.200 30.769 0.00 0.00 0.00 3.25
2787 2813 8.437360 TGAGTCATAGCATTATTTTGTACCAG 57.563 34.615 0.00 0.00 0.00 4.00
2824 2853 7.727331 AAGCTAGTAGTACCGTAGTCAATAG 57.273 40.000 0.00 0.00 0.00 1.73
2836 2865 5.232202 CCGTAGTCAATAGTACTGCATGTTG 59.768 44.000 5.39 3.44 30.81 3.33
2848 2877 3.944650 ACTGCATGTTGTGTTGTGTAGAA 59.055 39.130 0.00 0.00 0.00 2.10
2873 2902 3.832527 ACTGGAGGATCTCTAGAAGCTC 58.167 50.000 13.84 0.00 40.77 4.09
2882 2911 7.708624 AGGATCTCTAGAAGCTCCATATTAGT 58.291 38.462 14.23 0.00 41.91 2.24
2883 2912 8.841757 AGGATCTCTAGAAGCTCCATATTAGTA 58.158 37.037 14.23 0.00 41.91 1.82
2884 2913 9.469097 GGATCTCTAGAAGCTCCATATTAGTAA 57.531 37.037 9.11 0.00 39.65 2.24
2937 2967 3.560636 GCAGGATTGCTTTACTAGGGA 57.439 47.619 0.00 0.00 46.95 4.20
2939 2969 3.370527 GCAGGATTGCTTTACTAGGGACA 60.371 47.826 0.00 0.00 46.95 4.02
2944 2974 6.954102 AGGATTGCTTTACTAGGGACATTTTT 59.046 34.615 0.00 0.00 0.00 1.94
2979 3011 7.687941 AAGACCAGTTTAATACATGTCCAAG 57.312 36.000 0.00 0.00 32.82 3.61
2980 3012 6.779860 AGACCAGTTTAATACATGTCCAAGT 58.220 36.000 0.00 0.00 32.82 3.16
2981 3013 6.879458 AGACCAGTTTAATACATGTCCAAGTC 59.121 38.462 0.00 0.00 32.82 3.01
2982 3014 5.944007 ACCAGTTTAATACATGTCCAAGTCC 59.056 40.000 0.00 0.00 0.00 3.85
2983 3015 5.943416 CCAGTTTAATACATGTCCAAGTCCA 59.057 40.000 0.00 0.00 0.00 4.02
2984 3016 6.432783 CCAGTTTAATACATGTCCAAGTCCAA 59.567 38.462 0.00 0.00 0.00 3.53
2996 3028 2.884012 CCAAGTCCAACTGTGCAATACA 59.116 45.455 0.00 0.00 37.78 2.29
2999 3031 3.820557 AGTCCAACTGTGCAATACAAGT 58.179 40.909 0.00 0.00 39.20 3.16
3017 3049 9.651913 AATACAAGTTCAAGTTGATTGTTTGTT 57.348 25.926 23.15 15.40 38.58 2.83
3034 3066 3.116079 TGTTAGTCCGGTTGAAGTTCC 57.884 47.619 0.00 0.00 0.00 3.62
3043 3075 3.317993 CCGGTTGAAGTTCCATTTCACTT 59.682 43.478 0.00 0.00 34.50 3.16
3045 3077 4.051237 GGTTGAAGTTCCATTTCACTTGC 58.949 43.478 0.00 0.00 34.50 4.01
3058 3090 2.409975 TCACTTGCCTTAACACGCTAC 58.590 47.619 0.00 0.00 0.00 3.58
3069 3101 6.021596 CCTTAACACGCTACATTCATTTGTC 58.978 40.000 0.00 0.00 0.00 3.18
3072 3104 3.436704 ACACGCTACATTCATTTGTCCTG 59.563 43.478 0.00 0.00 0.00 3.86
3077 3109 5.564651 CGCTACATTCATTTGTCCTGGTTTT 60.565 40.000 0.00 0.00 0.00 2.43
3078 3110 5.634859 GCTACATTCATTTGTCCTGGTTTTG 59.365 40.000 0.00 0.00 0.00 2.44
3079 3111 5.867903 ACATTCATTTGTCCTGGTTTTGA 57.132 34.783 0.00 0.00 0.00 2.69
3101 3133 3.575965 ACCAGCCGAATGAAATTTCAC 57.424 42.857 22.71 10.50 40.49 3.18
3129 3161 7.945033 TTTCACAATGCTATTCCTTTTGAAC 57.055 32.000 0.00 0.00 35.31 3.18
3130 3162 6.647334 TCACAATGCTATTCCTTTTGAACA 57.353 33.333 0.00 0.00 35.31 3.18
3140 3172 8.515414 GCTATTCCTTTTGAACACTGAACTTAT 58.485 33.333 0.00 0.00 35.31 1.73
3184 3216 3.011566 TGGCAGGTTTCAGTTTTGAGA 57.988 42.857 0.00 0.00 34.15 3.27
3185 3217 2.951642 TGGCAGGTTTCAGTTTTGAGAG 59.048 45.455 0.00 0.00 34.15 3.20
3186 3218 3.214328 GGCAGGTTTCAGTTTTGAGAGA 58.786 45.455 0.00 0.00 34.15 3.10
3187 3219 3.003793 GGCAGGTTTCAGTTTTGAGAGAC 59.996 47.826 0.00 0.00 34.15 3.36
3188 3220 3.303395 GCAGGTTTCAGTTTTGAGAGACG 60.303 47.826 0.00 0.00 34.15 4.18
3189 3221 4.119862 CAGGTTTCAGTTTTGAGAGACGA 58.880 43.478 0.00 0.00 34.15 4.20
3190 3222 4.210120 CAGGTTTCAGTTTTGAGAGACGAG 59.790 45.833 0.00 0.00 34.15 4.18
3191 3223 3.495001 GGTTTCAGTTTTGAGAGACGAGG 59.505 47.826 0.00 0.00 34.15 4.63
3192 3224 4.120589 GTTTCAGTTTTGAGAGACGAGGT 58.879 43.478 0.00 0.00 34.15 3.85
3193 3225 4.402056 TTCAGTTTTGAGAGACGAGGTT 57.598 40.909 0.00 0.00 34.15 3.50
3194 3226 5.524971 TTCAGTTTTGAGAGACGAGGTTA 57.475 39.130 0.00 0.00 34.15 2.85
3195 3227 5.524971 TCAGTTTTGAGAGACGAGGTTAA 57.475 39.130 0.00 0.00 0.00 2.01
3196 3228 5.287226 TCAGTTTTGAGAGACGAGGTTAAC 58.713 41.667 0.00 0.00 0.00 2.01
3197 3229 5.047847 CAGTTTTGAGAGACGAGGTTAACA 58.952 41.667 8.10 0.00 0.00 2.41
3198 3230 5.522460 CAGTTTTGAGAGACGAGGTTAACAA 59.478 40.000 8.10 0.00 0.00 2.83
3199 3231 5.753921 AGTTTTGAGAGACGAGGTTAACAAG 59.246 40.000 8.10 0.40 0.00 3.16
3200 3232 5.524971 TTTGAGAGACGAGGTTAACAAGA 57.475 39.130 8.10 0.00 0.00 3.02
3201 3233 5.723672 TTGAGAGACGAGGTTAACAAGAT 57.276 39.130 8.10 0.00 0.00 2.40
3202 3234 5.312120 TGAGAGACGAGGTTAACAAGATC 57.688 43.478 8.10 0.00 0.00 2.75
3203 3235 4.765339 TGAGAGACGAGGTTAACAAGATCA 59.235 41.667 8.10 0.00 0.00 2.92
3204 3236 5.106118 TGAGAGACGAGGTTAACAAGATCAG 60.106 44.000 8.10 0.00 0.00 2.90
3205 3237 4.158764 AGAGACGAGGTTAACAAGATCAGG 59.841 45.833 8.10 0.00 0.00 3.86
3206 3238 3.195825 AGACGAGGTTAACAAGATCAGGG 59.804 47.826 8.10 0.00 0.00 4.45
3207 3239 2.280628 CGAGGTTAACAAGATCAGGGC 58.719 52.381 8.10 0.00 0.00 5.19
3208 3240 2.093447 CGAGGTTAACAAGATCAGGGCT 60.093 50.000 8.10 0.00 0.00 5.19
3209 3241 3.274288 GAGGTTAACAAGATCAGGGCTG 58.726 50.000 8.10 0.00 0.00 4.85
3210 3242 1.745653 GGTTAACAAGATCAGGGCTGC 59.254 52.381 8.10 0.00 0.00 5.25
3211 3243 2.619074 GGTTAACAAGATCAGGGCTGCT 60.619 50.000 8.10 0.00 0.00 4.24
3212 3244 2.408271 TAACAAGATCAGGGCTGCTG 57.592 50.000 0.00 0.00 0.00 4.41
3213 3245 0.694771 AACAAGATCAGGGCTGCTGA 59.305 50.000 0.00 0.00 35.13 4.26
3214 3246 0.917533 ACAAGATCAGGGCTGCTGAT 59.082 50.000 6.03 6.03 43.43 2.90
3215 3247 1.309950 CAAGATCAGGGCTGCTGATG 58.690 55.000 10.45 1.67 41.13 3.07
3216 3248 0.183014 AAGATCAGGGCTGCTGATGG 59.817 55.000 10.45 0.00 41.13 3.51
3217 3249 0.693430 AGATCAGGGCTGCTGATGGA 60.693 55.000 10.45 0.00 41.13 3.41
3218 3250 0.534652 GATCAGGGCTGCTGATGGAC 60.535 60.000 10.45 0.00 41.13 4.02
3219 3251 1.992519 ATCAGGGCTGCTGATGGACC 61.993 60.000 5.59 0.00 39.76 4.46
3220 3252 2.611800 AGGGCTGCTGATGGACCA 60.612 61.111 0.00 0.00 0.00 4.02
3221 3253 2.233566 AGGGCTGCTGATGGACCAA 61.234 57.895 0.00 0.00 0.00 3.67
3222 3254 2.048603 GGGCTGCTGATGGACCAAC 61.049 63.158 0.00 0.00 0.00 3.77
3223 3255 1.001641 GGCTGCTGATGGACCAACT 60.002 57.895 0.00 0.00 0.00 3.16
3224 3256 0.253044 GGCTGCTGATGGACCAACTA 59.747 55.000 0.00 0.00 0.00 2.24
3225 3257 1.373570 GCTGCTGATGGACCAACTAC 58.626 55.000 0.00 0.00 0.00 2.73
3226 3258 1.065854 GCTGCTGATGGACCAACTACT 60.066 52.381 0.00 0.00 0.00 2.57
3227 3259 2.616510 GCTGCTGATGGACCAACTACTT 60.617 50.000 0.00 0.00 0.00 2.24
3228 3260 3.265791 CTGCTGATGGACCAACTACTTC 58.734 50.000 0.00 0.00 0.00 3.01
3229 3261 2.906389 TGCTGATGGACCAACTACTTCT 59.094 45.455 0.00 0.00 0.00 2.85
3230 3262 3.327757 TGCTGATGGACCAACTACTTCTT 59.672 43.478 0.00 0.00 0.00 2.52
3231 3263 3.686726 GCTGATGGACCAACTACTTCTTG 59.313 47.826 0.00 0.00 0.00 3.02
3232 3264 4.563580 GCTGATGGACCAACTACTTCTTGA 60.564 45.833 0.00 0.00 0.00 3.02
3233 3265 5.738909 CTGATGGACCAACTACTTCTTGAT 58.261 41.667 0.00 0.00 0.00 2.57
3234 3266 5.734720 TGATGGACCAACTACTTCTTGATC 58.265 41.667 0.00 0.00 0.00 2.92
3235 3267 4.188247 TGGACCAACTACTTCTTGATCG 57.812 45.455 0.00 0.00 0.00 3.69
3236 3268 2.930682 GGACCAACTACTTCTTGATCGC 59.069 50.000 0.00 0.00 0.00 4.58
3237 3269 2.930682 GACCAACTACTTCTTGATCGCC 59.069 50.000 0.00 0.00 0.00 5.54
3238 3270 1.927174 CCAACTACTTCTTGATCGCCG 59.073 52.381 0.00 0.00 0.00 6.46
3239 3271 2.416836 CCAACTACTTCTTGATCGCCGA 60.417 50.000 0.00 0.00 0.00 5.54
3240 3272 2.853731 ACTACTTCTTGATCGCCGAG 57.146 50.000 0.00 0.00 0.00 4.63
3241 3273 2.366533 ACTACTTCTTGATCGCCGAGA 58.633 47.619 0.00 0.00 33.49 4.04
3242 3274 2.753452 ACTACTTCTTGATCGCCGAGAA 59.247 45.455 0.00 7.00 41.75 2.87
3243 3275 2.743636 ACTTCTTGATCGCCGAGAAA 57.256 45.000 0.00 0.00 42.98 2.52
3244 3276 3.252974 ACTTCTTGATCGCCGAGAAAT 57.747 42.857 0.00 0.00 42.98 2.17
3245 3277 3.190874 ACTTCTTGATCGCCGAGAAATC 58.809 45.455 0.00 0.00 42.98 2.17
3246 3278 3.118956 ACTTCTTGATCGCCGAGAAATCT 60.119 43.478 0.00 0.00 42.98 2.40
3247 3279 3.526931 TCTTGATCGCCGAGAAATCTT 57.473 42.857 0.00 0.00 32.40 2.40
3248 3280 3.448686 TCTTGATCGCCGAGAAATCTTC 58.551 45.455 0.00 0.00 32.40 2.87
3249 3281 2.225068 TGATCGCCGAGAAATCTTCC 57.775 50.000 0.00 0.00 0.00 3.46
3250 3282 1.480545 TGATCGCCGAGAAATCTTCCA 59.519 47.619 0.00 0.00 0.00 3.53
3251 3283 1.861575 GATCGCCGAGAAATCTTCCAC 59.138 52.381 0.00 0.00 0.00 4.02
3252 3284 0.895530 TCGCCGAGAAATCTTCCACT 59.104 50.000 0.00 0.00 0.00 4.00
3253 3285 1.275291 TCGCCGAGAAATCTTCCACTT 59.725 47.619 0.00 0.00 0.00 3.16
3254 3286 1.394917 CGCCGAGAAATCTTCCACTTG 59.605 52.381 0.00 0.00 0.00 3.16
3255 3287 1.740025 GCCGAGAAATCTTCCACTTGG 59.260 52.381 0.00 0.00 37.09 3.61
3256 3288 2.615493 GCCGAGAAATCTTCCACTTGGA 60.615 50.000 0.00 0.00 43.73 3.53
3257 3289 3.003480 CCGAGAAATCTTCCACTTGGAC 58.997 50.000 0.00 0.00 45.39 4.02
3258 3290 3.307059 CCGAGAAATCTTCCACTTGGACT 60.307 47.826 0.00 0.00 45.39 3.85
3259 3291 4.319177 CGAGAAATCTTCCACTTGGACTT 58.681 43.478 0.00 0.00 45.39 3.01
3260 3292 4.153117 CGAGAAATCTTCCACTTGGACTTG 59.847 45.833 0.00 0.00 45.39 3.16
3261 3293 5.308825 GAGAAATCTTCCACTTGGACTTGA 58.691 41.667 0.00 0.00 45.39 3.02
3262 3294 5.312079 AGAAATCTTCCACTTGGACTTGAG 58.688 41.667 0.00 0.00 45.39 3.02
3263 3295 4.713792 AATCTTCCACTTGGACTTGAGT 57.286 40.909 0.00 0.00 45.39 3.41
3264 3296 4.713792 ATCTTCCACTTGGACTTGAGTT 57.286 40.909 0.00 0.00 45.39 3.01
3265 3297 4.503714 TCTTCCACTTGGACTTGAGTTT 57.496 40.909 0.00 0.00 45.39 2.66
3266 3298 4.199310 TCTTCCACTTGGACTTGAGTTTG 58.801 43.478 0.00 0.00 45.39 2.93
3267 3299 3.644966 TCCACTTGGACTTGAGTTTGT 57.355 42.857 0.00 0.00 39.78 2.83
3268 3300 4.764050 TCCACTTGGACTTGAGTTTGTA 57.236 40.909 0.00 0.00 39.78 2.41
3269 3301 4.703897 TCCACTTGGACTTGAGTTTGTAG 58.296 43.478 0.00 0.00 39.78 2.74
3270 3302 3.251004 CCACTTGGACTTGAGTTTGTAGC 59.749 47.826 0.00 0.00 37.39 3.58
3271 3303 3.876914 CACTTGGACTTGAGTTTGTAGCA 59.123 43.478 0.00 0.00 0.00 3.49
3272 3304 4.024556 CACTTGGACTTGAGTTTGTAGCAG 60.025 45.833 0.00 0.00 0.00 4.24
3273 3305 3.838244 TGGACTTGAGTTTGTAGCAGT 57.162 42.857 0.00 0.00 0.00 4.40
3274 3306 3.466836 TGGACTTGAGTTTGTAGCAGTG 58.533 45.455 0.00 0.00 0.00 3.66
3275 3307 3.118408 TGGACTTGAGTTTGTAGCAGTGT 60.118 43.478 0.00 0.00 0.00 3.55
3276 3308 3.877508 GGACTTGAGTTTGTAGCAGTGTT 59.122 43.478 0.00 0.00 0.00 3.32
3277 3309 4.335594 GGACTTGAGTTTGTAGCAGTGTTT 59.664 41.667 0.00 0.00 0.00 2.83
3278 3310 5.235305 ACTTGAGTTTGTAGCAGTGTTTG 57.765 39.130 0.00 0.00 0.00 2.93
3291 3323 4.836125 CAGTGTTTGCCTTCTATGTGTT 57.164 40.909 0.00 0.00 0.00 3.32
3292 3324 5.186996 CAGTGTTTGCCTTCTATGTGTTT 57.813 39.130 0.00 0.00 0.00 2.83
3293 3325 4.977963 CAGTGTTTGCCTTCTATGTGTTTG 59.022 41.667 0.00 0.00 0.00 2.93
3294 3326 4.037923 AGTGTTTGCCTTCTATGTGTTTGG 59.962 41.667 0.00 0.00 0.00 3.28
3295 3327 4.037446 GTGTTTGCCTTCTATGTGTTTGGA 59.963 41.667 0.00 0.00 0.00 3.53
3296 3328 4.832266 TGTTTGCCTTCTATGTGTTTGGAT 59.168 37.500 0.00 0.00 0.00 3.41
3297 3329 6.007076 TGTTTGCCTTCTATGTGTTTGGATA 58.993 36.000 0.00 0.00 0.00 2.59
3298 3330 6.663093 TGTTTGCCTTCTATGTGTTTGGATAT 59.337 34.615 0.00 0.00 0.00 1.63
3299 3331 7.178274 TGTTTGCCTTCTATGTGTTTGGATATT 59.822 33.333 0.00 0.00 0.00 1.28
3300 3332 8.682710 GTTTGCCTTCTATGTGTTTGGATATTA 58.317 33.333 0.00 0.00 0.00 0.98
3301 3333 7.801716 TGCCTTCTATGTGTTTGGATATTAC 57.198 36.000 0.00 0.00 0.00 1.89
3302 3334 7.573710 TGCCTTCTATGTGTTTGGATATTACT 58.426 34.615 0.00 0.00 0.00 2.24
3303 3335 8.710239 TGCCTTCTATGTGTTTGGATATTACTA 58.290 33.333 0.00 0.00 0.00 1.82
3304 3336 8.989980 GCCTTCTATGTGTTTGGATATTACTAC 58.010 37.037 0.00 0.00 0.00 2.73
3305 3337 9.490379 CCTTCTATGTGTTTGGATATTACTACC 57.510 37.037 0.00 0.00 0.00 3.18
3312 3344 9.209048 TGTGTTTGGATATTACTACCTAGATGT 57.791 33.333 0.00 0.00 0.00 3.06
3315 3347 9.857957 GTTTGGATATTACTACCTAGATGTAGC 57.142 37.037 6.19 0.00 41.57 3.58
3316 3348 9.824216 TTTGGATATTACTACCTAGATGTAGCT 57.176 33.333 6.19 0.00 41.57 3.32
3317 3349 8.809468 TGGATATTACTACCTAGATGTAGCTG 57.191 38.462 0.00 0.00 41.57 4.24
3318 3350 7.834681 TGGATATTACTACCTAGATGTAGCTGG 59.165 40.741 0.00 0.00 41.57 4.85
3319 3351 8.053963 GGATATTACTACCTAGATGTAGCTGGA 58.946 40.741 0.00 0.00 41.57 3.86
3320 3352 9.635404 GATATTACTACCTAGATGTAGCTGGAT 57.365 37.037 0.00 0.00 41.57 3.41
3321 3353 7.948034 ATTACTACCTAGATGTAGCTGGATC 57.052 40.000 0.00 0.00 41.57 3.36
3322 3354 4.328536 ACTACCTAGATGTAGCTGGATCG 58.671 47.826 0.00 0.00 41.57 3.69
3323 3355 1.889829 ACCTAGATGTAGCTGGATCGC 59.110 52.381 0.00 0.00 0.00 4.58
3324 3356 1.889170 CCTAGATGTAGCTGGATCGCA 59.111 52.381 0.00 0.00 0.00 5.10
3325 3357 2.495270 CCTAGATGTAGCTGGATCGCAT 59.505 50.000 0.00 0.00 0.00 4.73
3326 3358 3.696548 CCTAGATGTAGCTGGATCGCATA 59.303 47.826 0.00 0.00 0.00 3.14
3327 3359 4.158579 CCTAGATGTAGCTGGATCGCATAA 59.841 45.833 0.00 0.00 0.00 1.90
3328 3360 4.815533 AGATGTAGCTGGATCGCATAAT 57.184 40.909 0.00 0.00 0.00 1.28
3329 3361 5.157940 AGATGTAGCTGGATCGCATAATT 57.842 39.130 0.00 0.00 0.00 1.40
3330 3362 6.286240 AGATGTAGCTGGATCGCATAATTA 57.714 37.500 0.00 0.00 0.00 1.40
3331 3363 6.882656 AGATGTAGCTGGATCGCATAATTAT 58.117 36.000 0.00 0.00 0.00 1.28
3332 3364 7.334090 AGATGTAGCTGGATCGCATAATTATT 58.666 34.615 0.00 0.00 0.00 1.40
3333 3365 6.968131 TGTAGCTGGATCGCATAATTATTC 57.032 37.500 0.00 0.00 0.00 1.75
3334 3366 5.874810 TGTAGCTGGATCGCATAATTATTCC 59.125 40.000 0.00 6.88 0.00 3.01
3335 3367 5.171339 AGCTGGATCGCATAATTATTCCT 57.829 39.130 12.88 0.00 0.00 3.36
3336 3368 4.940046 AGCTGGATCGCATAATTATTCCTG 59.060 41.667 12.88 12.89 0.00 3.86
3337 3369 4.697352 GCTGGATCGCATAATTATTCCTGT 59.303 41.667 16.21 0.00 0.00 4.00
3338 3370 5.391310 GCTGGATCGCATAATTATTCCTGTG 60.391 44.000 16.21 6.77 0.00 3.66
3339 3371 5.620206 TGGATCGCATAATTATTCCTGTGT 58.380 37.500 12.88 0.00 0.00 3.72
3340 3372 6.764379 TGGATCGCATAATTATTCCTGTGTA 58.236 36.000 12.88 0.00 0.00 2.90
3341 3373 6.873605 TGGATCGCATAATTATTCCTGTGTAG 59.126 38.462 12.88 0.00 0.00 2.74
3342 3374 6.874134 GGATCGCATAATTATTCCTGTGTAGT 59.126 38.462 6.65 0.00 0.00 2.73
3343 3375 7.387948 GGATCGCATAATTATTCCTGTGTAGTT 59.612 37.037 6.65 0.00 0.00 2.24
3344 3376 8.677148 ATCGCATAATTATTCCTGTGTAGTTT 57.323 30.769 0.00 0.00 0.00 2.66
3345 3377 7.915508 TCGCATAATTATTCCTGTGTAGTTTG 58.084 34.615 0.00 0.00 0.00 2.93
3346 3378 6.632834 CGCATAATTATTCCTGTGTAGTTTGC 59.367 38.462 0.00 0.00 0.00 3.68
3347 3379 7.479980 GCATAATTATTCCTGTGTAGTTTGCA 58.520 34.615 0.00 0.00 0.00 4.08
3348 3380 7.645340 GCATAATTATTCCTGTGTAGTTTGCAG 59.355 37.037 0.00 0.00 0.00 4.41
3355 3387 3.668447 CTGTGTAGTTTGCAGGATGACT 58.332 45.455 0.00 0.00 39.69 3.41
3356 3388 4.067896 CTGTGTAGTTTGCAGGATGACTT 58.932 43.478 0.00 0.00 39.69 3.01
3357 3389 5.222079 TGTGTAGTTTGCAGGATGACTTA 57.778 39.130 0.00 0.00 39.69 2.24
3358 3390 5.804639 TGTGTAGTTTGCAGGATGACTTAT 58.195 37.500 0.00 0.00 39.69 1.73
3359 3391 5.643348 TGTGTAGTTTGCAGGATGACTTATG 59.357 40.000 0.00 0.00 39.69 1.90
3360 3392 5.643777 GTGTAGTTTGCAGGATGACTTATGT 59.356 40.000 0.00 0.00 39.69 2.29
3361 3393 6.149474 GTGTAGTTTGCAGGATGACTTATGTT 59.851 38.462 0.00 0.00 39.69 2.71
3362 3394 5.633830 AGTTTGCAGGATGACTTATGTTG 57.366 39.130 0.00 0.00 39.69 3.33
3363 3395 5.072741 AGTTTGCAGGATGACTTATGTTGT 58.927 37.500 0.00 0.00 39.69 3.32
3364 3396 5.048504 AGTTTGCAGGATGACTTATGTTGTG 60.049 40.000 0.00 0.00 39.69 3.33
3365 3397 4.019792 TGCAGGATGACTTATGTTGTGT 57.980 40.909 0.00 0.00 39.69 3.72
3366 3398 4.397420 TGCAGGATGACTTATGTTGTGTT 58.603 39.130 0.00 0.00 39.69 3.32
3367 3399 5.555966 TGCAGGATGACTTATGTTGTGTTA 58.444 37.500 0.00 0.00 39.69 2.41
3368 3400 6.000840 TGCAGGATGACTTATGTTGTGTTAA 58.999 36.000 0.00 0.00 39.69 2.01
3369 3401 6.072728 TGCAGGATGACTTATGTTGTGTTAAC 60.073 38.462 0.00 0.00 39.69 2.01
3370 3402 6.149474 GCAGGATGACTTATGTTGTGTTAACT 59.851 38.462 7.22 0.00 39.69 2.24
3371 3403 7.521529 CAGGATGACTTATGTTGTGTTAACTG 58.478 38.462 7.22 0.00 39.69 3.16
3372 3404 7.387673 CAGGATGACTTATGTTGTGTTAACTGA 59.612 37.037 7.22 0.00 39.69 3.41
3373 3405 8.103305 AGGATGACTTATGTTGTGTTAACTGAT 58.897 33.333 7.22 0.00 0.00 2.90
3374 3406 9.378551 GGATGACTTATGTTGTGTTAACTGATA 57.621 33.333 7.22 0.00 0.00 2.15
3377 3409 8.995220 TGACTTATGTTGTGTTAACTGATAACC 58.005 33.333 7.22 0.00 42.74 2.85
3378 3410 9.216117 GACTTATGTTGTGTTAACTGATAACCT 57.784 33.333 7.22 0.00 42.74 3.50
3383 3415 9.959721 ATGTTGTGTTAACTGATAACCTAAGAT 57.040 29.630 7.22 3.00 42.74 2.40
3384 3416 9.214957 TGTTGTGTTAACTGATAACCTAAGATG 57.785 33.333 7.22 0.00 42.74 2.90
3385 3417 9.216117 GTTGTGTTAACTGATAACCTAAGATGT 57.784 33.333 7.22 0.00 42.74 3.06
3386 3418 9.787435 TTGTGTTAACTGATAACCTAAGATGTT 57.213 29.630 7.22 0.00 42.74 2.71
3414 3446 2.404923 GGGAAGCCCAAGTAAGTCTC 57.595 55.000 0.00 0.00 44.65 3.36
3415 3447 1.909986 GGGAAGCCCAAGTAAGTCTCT 59.090 52.381 0.00 0.00 44.65 3.10
3416 3448 2.093394 GGGAAGCCCAAGTAAGTCTCTC 60.093 54.545 0.00 0.00 44.65 3.20
3417 3449 2.835156 GGAAGCCCAAGTAAGTCTCTCT 59.165 50.000 0.00 0.00 0.00 3.10
3418 3450 4.024670 GGAAGCCCAAGTAAGTCTCTCTA 58.975 47.826 0.00 0.00 0.00 2.43
3419 3451 4.651962 GGAAGCCCAAGTAAGTCTCTCTAT 59.348 45.833 0.00 0.00 0.00 1.98
3420 3452 5.129650 GGAAGCCCAAGTAAGTCTCTCTATT 59.870 44.000 0.00 0.00 0.00 1.73
3421 3453 5.862678 AGCCCAAGTAAGTCTCTCTATTC 57.137 43.478 0.00 0.00 0.00 1.75
3422 3454 5.524535 AGCCCAAGTAAGTCTCTCTATTCT 58.475 41.667 0.00 0.00 0.00 2.40
3423 3455 5.596772 AGCCCAAGTAAGTCTCTCTATTCTC 59.403 44.000 0.00 0.00 0.00 2.87
3424 3456 5.221362 GCCCAAGTAAGTCTCTCTATTCTCC 60.221 48.000 0.00 0.00 0.00 3.71
3425 3457 6.133356 CCCAAGTAAGTCTCTCTATTCTCCT 58.867 44.000 0.00 0.00 0.00 3.69
3426 3458 6.609616 CCCAAGTAAGTCTCTCTATTCTCCTT 59.390 42.308 0.00 0.00 0.00 3.36
3427 3459 7.201875 CCCAAGTAAGTCTCTCTATTCTCCTTC 60.202 44.444 0.00 0.00 0.00 3.46
3428 3460 7.414436 CAAGTAAGTCTCTCTATTCTCCTTCG 58.586 42.308 0.00 0.00 0.00 3.79
3429 3461 6.891388 AGTAAGTCTCTCTATTCTCCTTCGA 58.109 40.000 0.00 0.00 0.00 3.71
3430 3462 6.764560 AGTAAGTCTCTCTATTCTCCTTCGAC 59.235 42.308 0.00 0.00 0.00 4.20
3431 3463 5.367945 AGTCTCTCTATTCTCCTTCGACT 57.632 43.478 0.00 0.00 0.00 4.18
3432 3464 6.488769 AGTCTCTCTATTCTCCTTCGACTA 57.511 41.667 0.00 0.00 0.00 2.59
3433 3465 7.074653 AGTCTCTCTATTCTCCTTCGACTAT 57.925 40.000 0.00 0.00 0.00 2.12
3434 3466 7.514721 AGTCTCTCTATTCTCCTTCGACTATT 58.485 38.462 0.00 0.00 0.00 1.73
3435 3467 7.660208 AGTCTCTCTATTCTCCTTCGACTATTC 59.340 40.741 0.00 0.00 0.00 1.75
3437 3469 5.701750 TCTCTATTCTCCTTCGACTATTCGG 59.298 44.000 2.41 0.00 45.90 4.30
3438 3470 4.760715 TCTATTCTCCTTCGACTATTCGGG 59.239 45.833 2.41 0.00 45.90 5.14
3439 3471 1.688772 TCTCCTTCGACTATTCGGGG 58.311 55.000 2.41 5.97 45.90 5.73
3440 3472 1.213678 TCTCCTTCGACTATTCGGGGA 59.786 52.381 13.82 13.82 45.90 4.81
3441 3473 2.158505 TCTCCTTCGACTATTCGGGGAT 60.159 50.000 14.51 0.00 45.90 3.85
3442 3474 3.073503 TCTCCTTCGACTATTCGGGGATA 59.926 47.826 14.51 8.18 45.90 2.59
3443 3475 4.017808 CTCCTTCGACTATTCGGGGATAT 58.982 47.826 14.51 0.00 45.90 1.63
3444 3476 5.045359 TCTCCTTCGACTATTCGGGGATATA 60.045 44.000 14.51 5.52 45.90 0.86
3445 3477 5.191426 TCCTTCGACTATTCGGGGATATAG 58.809 45.833 11.68 0.00 45.90 1.31
3446 3478 4.202030 CCTTCGACTATTCGGGGATATAGC 60.202 50.000 2.41 0.00 45.90 2.97
3447 3479 3.959293 TCGACTATTCGGGGATATAGCA 58.041 45.455 2.41 0.00 45.90 3.49
3448 3480 3.945921 TCGACTATTCGGGGATATAGCAG 59.054 47.826 2.41 0.00 45.90 4.24
3449 3481 3.066900 CGACTATTCGGGGATATAGCAGG 59.933 52.174 0.00 0.00 41.89 4.85
3450 3482 4.279145 GACTATTCGGGGATATAGCAGGA 58.721 47.826 0.00 0.00 0.00 3.86
3451 3483 4.024670 ACTATTCGGGGATATAGCAGGAC 58.975 47.826 0.00 0.00 0.00 3.85
3452 3484 2.696526 TTCGGGGATATAGCAGGACT 57.303 50.000 0.00 0.00 0.00 3.85
3453 3485 2.217510 TCGGGGATATAGCAGGACTC 57.782 55.000 0.00 0.00 0.00 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.606668 CCTTCAGCGCAGGTTAAACAA 59.393 47.619 11.47 0.00 33.74 2.83
1 2 1.234821 CCTTCAGCGCAGGTTAAACA 58.765 50.000 11.47 0.00 33.74 2.83
2 3 0.109735 GCCTTCAGCGCAGGTTAAAC 60.110 55.000 11.47 0.00 33.74 2.01
3 4 2.253513 GCCTTCAGCGCAGGTTAAA 58.746 52.632 11.47 0.00 33.74 1.52
4 5 3.981308 GCCTTCAGCGCAGGTTAA 58.019 55.556 11.47 0.00 33.74 2.01
14 15 4.899239 CCTAGCCGGCGCCTTCAG 62.899 72.222 26.68 15.34 34.57 3.02
34 35 4.371231 AGGGGGTGGGGAAGGGAG 62.371 72.222 0.00 0.00 0.00 4.30
35 36 4.364686 GAGGGGGTGGGGAAGGGA 62.365 72.222 0.00 0.00 0.00 4.20
36 37 3.910646 AAGAGGGGGTGGGGAAGGG 62.911 68.421 0.00 0.00 0.00 3.95
37 38 1.857348 AAAGAGGGGGTGGGGAAGG 60.857 63.158 0.00 0.00 0.00 3.46
65 66 4.440387 GCTTAGTTTTTCAACGGGGAAACA 60.440 41.667 3.60 0.00 36.56 2.83
121 122 0.883833 AAATATGCGCTATGGGCTGC 59.116 50.000 9.73 0.00 42.10 5.25
224 225 8.565896 TGCTTCAAGATCTATGTTGTTATGTT 57.434 30.769 0.00 0.00 33.29 2.71
230 231 6.882610 TTGTTGCTTCAAGATCTATGTTGT 57.117 33.333 0.00 0.00 33.29 3.32
232 233 7.692460 TCATTGTTGCTTCAAGATCTATGTT 57.308 32.000 0.00 0.00 0.00 2.71
277 279 5.297547 TCATACAGGACTGTTCAAACTCAC 58.702 41.667 10.57 0.00 41.83 3.51
285 287 6.228258 TGTTTAGGTTCATACAGGACTGTTC 58.772 40.000 10.57 0.00 41.83 3.18
417 424 5.048921 CGAACAGGTAGAGTGAAGTGACTTA 60.049 44.000 0.00 0.00 0.00 2.24
495 505 6.165577 TGTTATACAAGGTTTAGGTCCGTTC 58.834 40.000 0.00 0.00 0.00 3.95
515 525 7.013083 TGTTAGACTTTATTTTGCCGGTTGTTA 59.987 33.333 1.90 0.00 0.00 2.41
535 545 6.184789 AGGTCCTTTTTCTTTGTGTGTTAGA 58.815 36.000 0.00 0.00 0.00 2.10
537 547 5.358725 GGAGGTCCTTTTTCTTTGTGTGTTA 59.641 40.000 0.00 0.00 0.00 2.41
621 635 2.023695 AGATAGGGAACGAACTGGGGTA 60.024 50.000 0.00 0.00 0.00 3.69
641 655 5.647658 TGTTGTTTCTTGTATATCAGCCCAG 59.352 40.000 0.00 0.00 0.00 4.45
718 732 6.157211 TCGACTGATTTTTAGTGAAGTCTCC 58.843 40.000 0.00 0.00 33.49 3.71
743 757 2.297315 CTCCTTTGCCTTCTTTGGGTTC 59.703 50.000 0.00 0.00 0.00 3.62
744 758 2.091333 TCTCCTTTGCCTTCTTTGGGTT 60.091 45.455 0.00 0.00 0.00 4.11
745 759 1.499007 TCTCCTTTGCCTTCTTTGGGT 59.501 47.619 0.00 0.00 0.00 4.51
746 760 2.165998 CTCTCCTTTGCCTTCTTTGGG 58.834 52.381 0.00 0.00 0.00 4.12
747 761 3.080319 CTCTCTCCTTTGCCTTCTTTGG 58.920 50.000 0.00 0.00 0.00 3.28
748 762 2.487372 GCTCTCTCCTTTGCCTTCTTTG 59.513 50.000 0.00 0.00 0.00 2.77
749 763 2.554124 GGCTCTCTCCTTTGCCTTCTTT 60.554 50.000 0.00 0.00 41.92 2.52
750 764 1.004161 GGCTCTCTCCTTTGCCTTCTT 59.996 52.381 0.00 0.00 41.92 2.52
751 765 0.617935 GGCTCTCTCCTTTGCCTTCT 59.382 55.000 0.00 0.00 41.92 2.85
752 766 0.326264 TGGCTCTCTCCTTTGCCTTC 59.674 55.000 0.00 0.00 45.11 3.46
753 767 0.327591 CTGGCTCTCTCCTTTGCCTT 59.672 55.000 0.00 0.00 45.11 4.35
754 768 0.546267 TCTGGCTCTCTCCTTTGCCT 60.546 55.000 0.00 0.00 45.11 4.75
755 769 0.107752 CTCTGGCTCTCTCCTTTGCC 60.108 60.000 0.00 0.00 45.10 4.52
756 770 0.901124 TCTCTGGCTCTCTCCTTTGC 59.099 55.000 0.00 0.00 0.00 3.68
757 771 1.481772 CCTCTCTGGCTCTCTCCTTTG 59.518 57.143 0.00 0.00 0.00 2.77
758 772 1.864669 CCTCTCTGGCTCTCTCCTTT 58.135 55.000 0.00 0.00 0.00 3.11
759 773 3.613661 CCTCTCTGGCTCTCTCCTT 57.386 57.895 0.00 0.00 0.00 3.36
769 783 3.314331 ACCCGTGTGCCTCTCTGG 61.314 66.667 0.00 0.00 39.35 3.86
770 784 2.047844 CACCCGTGTGCCTCTCTG 60.048 66.667 0.00 0.00 35.31 3.35
785 799 1.446966 GACAGCTTCCTCCGCTCAC 60.447 63.158 0.00 0.00 35.07 3.51
786 800 2.973899 GACAGCTTCCTCCGCTCA 59.026 61.111 0.00 0.00 35.07 4.26
787 801 2.202676 CGACAGCTTCCTCCGCTC 60.203 66.667 0.00 0.00 35.07 5.03
788 802 2.992114 ACGACAGCTTCCTCCGCT 60.992 61.111 0.00 0.00 38.49 5.52
790 804 0.456995 GAAGACGACAGCTTCCTCCG 60.457 60.000 0.00 0.00 36.59 4.63
791 805 0.892063 AGAAGACGACAGCTTCCTCC 59.108 55.000 0.00 0.00 42.04 4.30
792 806 2.601804 GAAGAAGACGACAGCTTCCTC 58.398 52.381 0.00 0.00 42.04 3.71
793 807 2.734276 GAAGAAGACGACAGCTTCCT 57.266 50.000 0.00 0.00 42.04 3.36
794 808 1.715993 GGAAGAAGACGACAGCTTCC 58.284 55.000 17.55 17.55 46.56 3.46
819 833 1.735198 CGTCGGCGGCAAAGAGTAA 60.735 57.895 13.62 0.00 0.00 2.24
820 834 2.126228 CGTCGGCGGCAAAGAGTA 60.126 61.111 13.62 0.00 0.00 2.59
854 869 0.391263 GACTTCACCTTACTGGCCCG 60.391 60.000 0.00 0.00 40.22 6.13
860 875 3.228453 TCCAAGACGACTTCACCTTACT 58.772 45.455 0.00 0.00 33.70 2.24
882 897 2.188207 GAAGGGGGAGCTTCTCGC 59.812 66.667 0.00 2.71 41.74 5.03
883 898 1.261238 ACAGAAGGGGGAGCTTCTCG 61.261 60.000 0.00 0.00 37.78 4.04
893 909 0.539669 AAAAGCGGGAACAGAAGGGG 60.540 55.000 0.00 0.00 0.00 4.79
901 917 3.806958 CTCGTTAAAGAAAAGCGGGAAC 58.193 45.455 0.00 0.00 0.00 3.62
903 919 1.802365 GCTCGTTAAAGAAAAGCGGGA 59.198 47.619 0.00 0.00 0.00 5.14
927 943 2.966309 GCAACTGGAACGAAGCGGG 61.966 63.158 0.00 0.00 0.00 6.13
935 951 3.670377 GGGTGCGGCAACTGGAAC 61.670 66.667 18.73 0.00 0.00 3.62
940 956 4.388499 CCTACGGGTGCGGCAACT 62.388 66.667 18.73 0.90 0.00 3.16
969 985 4.077184 TGGCGGGCGTAGGTTCTG 62.077 66.667 0.00 0.00 0.00 3.02
1013 1029 0.934496 CGACGCTTTTGTGGTCTTGA 59.066 50.000 0.00 0.00 0.00 3.02
1035 1051 1.080434 GTGGTCTCCAGTGCTCGAC 60.080 63.158 0.00 0.00 32.34 4.20
1044 1060 3.695606 GCGCTGAGGTGGTCTCCA 61.696 66.667 0.00 0.00 41.76 3.86
1106 1122 4.680237 TCCGCACGGCTTCCTGTG 62.680 66.667 3.66 0.00 39.10 3.66
1107 1123 4.681978 GTCCGCACGGCTTCCTGT 62.682 66.667 3.66 0.00 34.68 4.00
1153 1169 0.831288 CGAGGGATGAGCCTCCAGAT 60.831 60.000 0.00 0.00 37.01 2.90
1230 1246 2.125753 GGCAGAGTCAGCTGGTCG 60.126 66.667 15.13 8.72 36.41 4.79
1251 1267 2.442272 ATAGTGGAGCCGCGGTCT 60.442 61.111 28.70 23.74 0.00 3.85
1264 1280 1.062294 GAACTCGCACTCGTCGATAGT 59.938 52.381 0.00 0.00 35.25 2.12
1266 1282 0.025898 CGAACTCGCACTCGTCGATA 59.974 55.000 0.00 0.00 34.87 2.92
1267 1283 1.226046 CGAACTCGCACTCGTCGAT 60.226 57.895 0.00 0.00 34.87 3.59
1269 1285 1.188769 GATCGAACTCGCACTCGTCG 61.189 60.000 0.00 0.00 39.60 5.12
1284 1300 1.217882 GCAATAACCCACGGAGATCG 58.782 55.000 0.00 0.00 45.88 3.69
1293 1309 3.153919 GTCCTCAAGTTGCAATAACCCA 58.846 45.455 0.59 0.00 0.00 4.51
1299 1315 0.593128 GTGCGTCCTCAAGTTGCAAT 59.407 50.000 0.59 0.00 37.30 3.56
1304 1320 1.603802 CAACATGTGCGTCCTCAAGTT 59.396 47.619 0.00 0.00 29.59 2.66
1305 1321 1.202639 TCAACATGTGCGTCCTCAAGT 60.203 47.619 0.00 0.00 0.00 3.16
1308 1324 0.602638 GGTCAACATGTGCGTCCTCA 60.603 55.000 0.00 0.00 0.00 3.86
1319 1335 1.407437 GCCGAATCCAGAGGTCAACAT 60.407 52.381 0.00 0.00 0.00 2.71
1320 1336 0.036388 GCCGAATCCAGAGGTCAACA 60.036 55.000 0.00 0.00 0.00 3.33
1321 1337 1.084370 CGCCGAATCCAGAGGTCAAC 61.084 60.000 0.00 0.00 0.00 3.18
1328 1344 0.871722 CAAAACACGCCGAATCCAGA 59.128 50.000 0.00 0.00 0.00 3.86
1335 1351 1.353804 GCACTTCAAAACACGCCGA 59.646 52.632 0.00 0.00 0.00 5.54
1338 1354 2.315901 GTATGGCACTTCAAAACACGC 58.684 47.619 0.00 0.00 0.00 5.34
1360 1376 0.543749 AGATGGACTTGTAGCAGCCC 59.456 55.000 0.00 0.00 0.00 5.19
1363 1379 3.793801 GCGTAGAGATGGACTTGTAGCAG 60.794 52.174 0.00 0.00 0.00 4.24
1368 1384 4.890581 AGATTAGCGTAGAGATGGACTTGT 59.109 41.667 0.00 0.00 0.00 3.16
1377 1393 3.147629 GGCTGGTAGATTAGCGTAGAGA 58.852 50.000 0.00 0.00 40.78 3.10
1384 1400 2.224161 CCTGAGTGGCTGGTAGATTAGC 60.224 54.545 0.00 0.00 39.17 3.09
1402 1418 3.133003 AGTCTGACGATTAATGGTCCCTG 59.867 47.826 22.97 14.93 35.04 4.45
1403 1419 3.133003 CAGTCTGACGATTAATGGTCCCT 59.867 47.826 22.97 14.96 35.04 4.20
1404 1420 3.458189 CAGTCTGACGATTAATGGTCCC 58.542 50.000 22.97 13.36 35.04 4.46
1406 1422 4.113354 GTCCAGTCTGACGATTAATGGTC 58.887 47.826 20.21 20.21 36.26 4.02
1407 1423 3.513912 TGTCCAGTCTGACGATTAATGGT 59.486 43.478 2.38 2.38 38.11 3.55
1413 1429 2.492088 TCGATTGTCCAGTCTGACGATT 59.508 45.455 0.00 0.00 39.06 3.34
1414 1430 2.092323 TCGATTGTCCAGTCTGACGAT 58.908 47.619 0.00 3.44 41.15 3.73
1421 1443 2.096248 AGAGAGGTCGATTGTCCAGTC 58.904 52.381 0.00 0.00 0.00 3.51
1427 1449 2.104170 GGGAGAAGAGAGGTCGATTGT 58.896 52.381 0.00 0.00 0.00 2.71
1431 1453 1.077644 CGGGGAGAAGAGAGGTCGA 60.078 63.158 0.00 0.00 0.00 4.20
1476 1498 4.019860 AGCAAGCTATCTTCCAAGAAGACA 60.020 41.667 9.12 0.00 38.77 3.41
1477 1499 4.512484 AGCAAGCTATCTTCCAAGAAGAC 58.488 43.478 9.12 0.00 38.77 3.01
1481 1503 4.558226 TCAAGCAAGCTATCTTCCAAGA 57.442 40.909 0.00 0.00 39.78 3.02
1509 1531 1.498865 CGTTCAACACCGAGCAGCTT 61.499 55.000 0.00 0.00 0.00 3.74
1546 1568 7.693969 AGATATGATCAGTATCGATGACACA 57.306 36.000 8.54 3.70 34.60 3.72
1552 1574 6.665248 TGGGACAAGATATGATCAGTATCGAT 59.335 38.462 2.16 2.16 34.51 3.59
1588 1610 2.756760 CACAGCCCATGATGCTAAGTTT 59.243 45.455 9.05 0.00 36.81 2.66
1595 1617 1.035932 AAGCTCACAGCCCATGATGC 61.036 55.000 0.00 0.00 43.77 3.91
1602 1624 1.662044 CCAACAAAGCTCACAGCCC 59.338 57.895 0.00 0.00 43.77 5.19
1605 1627 0.040958 GTCGCCAACAAAGCTCACAG 60.041 55.000 0.00 0.00 0.00 3.66
1622 1644 5.355596 CAGATATGAGAGTTGGGTGAAGTC 58.644 45.833 0.00 0.00 34.56 3.01
1624 1646 4.125703 GCAGATATGAGAGTTGGGTGAAG 58.874 47.826 0.00 0.00 0.00 3.02
1626 1648 3.378512 AGCAGATATGAGAGTTGGGTGA 58.621 45.455 0.00 0.00 0.00 4.02
1638 1660 7.714377 AGTGAAATAAGACTTGGAGCAGATATG 59.286 37.037 0.00 0.00 0.00 1.78
1672 1694 7.577303 ACTGGAGTCACACCAATATAATCATT 58.423 34.615 0.00 0.00 36.95 2.57
1681 1703 1.734655 AGGACTGGAGTCACACCAAT 58.265 50.000 8.99 0.00 46.47 3.16
1683 1705 0.758734 CAAGGACTGGAGTCACACCA 59.241 55.000 8.99 0.00 46.47 4.17
1713 1735 6.598753 TTCACAGTTGCTGTTTCTAGTAAC 57.401 37.500 5.35 5.35 42.59 2.50
1716 1738 5.615289 AGATTCACAGTTGCTGTTTCTAGT 58.385 37.500 0.00 0.00 42.59 2.57
1725 1747 1.251251 GGCCAAGATTCACAGTTGCT 58.749 50.000 0.00 0.00 0.00 3.91
1746 1768 6.318144 AGAAATCACAGTATTGCTCATTCTGG 59.682 38.462 7.61 0.00 35.15 3.86
1749 1771 6.965500 CACAGAAATCACAGTATTGCTCATTC 59.035 38.462 0.00 0.00 0.00 2.67
1761 1783 5.392380 GCCACCTTTATCACAGAAATCACAG 60.392 44.000 0.00 0.00 0.00 3.66
1835 1857 1.137086 GCACAGAGACATCGGGTGTAT 59.863 52.381 0.00 0.00 42.36 2.29
1845 1867 1.271001 CCCACAAGATGCACAGAGACA 60.271 52.381 0.00 0.00 0.00 3.41
1854 1876 0.036732 TGGACAGACCCACAAGATGC 59.963 55.000 0.00 0.00 38.00 3.91
1861 1883 0.669625 GTAACGCTGGACAGACCCAC 60.670 60.000 3.00 0.00 38.00 4.61
1872 1894 4.793071 TCAATTCCAAACATGTAACGCTG 58.207 39.130 0.00 0.00 0.00 5.18
1875 1897 6.785191 AGCTATCAATTCCAAACATGTAACG 58.215 36.000 0.00 0.00 0.00 3.18
1877 1899 7.615365 AGGAAGCTATCAATTCCAAACATGTAA 59.385 33.333 0.00 0.00 46.21 2.41
1906 1928 4.870123 TGAACTGCAAGCATACCATTTT 57.130 36.364 0.00 0.00 37.60 1.82
1930 1952 9.162793 GATATGAAATTTGAACATGTAAGCTCG 57.837 33.333 0.00 0.00 0.00 5.03
2032 2055 6.097412 GGCAGTATTGAAGATCCCTTTTGAAT 59.903 38.462 0.00 0.00 31.62 2.57
2037 2060 3.529319 AGGGCAGTATTGAAGATCCCTTT 59.471 43.478 0.00 0.00 39.45 3.11
2049 2072 2.814805 ACTGAATGCAGGGCAGTATT 57.185 45.000 14.85 0.00 46.60 1.89
2056 2079 5.591877 AGATTTTAGCTTACTGAATGCAGGG 59.408 40.000 5.47 0.00 46.60 4.45
2116 2139 6.229936 TGGAGAAAGTGTAGTAGTGTTTGT 57.770 37.500 0.00 0.00 0.00 2.83
2128 2151 2.224426 TGGTGCGTAATGGAGAAAGTGT 60.224 45.455 0.00 0.00 0.00 3.55
2129 2152 2.416547 CTGGTGCGTAATGGAGAAAGTG 59.583 50.000 0.00 0.00 0.00 3.16
2144 2167 3.991121 GTGAGTTTCTCTAGAACTGGTGC 59.009 47.826 0.21 0.00 33.13 5.01
2150 2173 7.430441 ACTTGAAGAGTGAGTTTCTCTAGAAC 58.570 38.462 0.00 0.00 40.79 3.01
2204 2227 7.744087 TCCATAAAGGCAATACACATCATAC 57.256 36.000 0.00 0.00 37.29 2.39
2207 2230 6.186957 AGTTCCATAAAGGCAATACACATCA 58.813 36.000 0.00 0.00 37.29 3.07
2271 2294 9.135189 CAATTCCATATCTGATTTGGGTTTCTA 57.865 33.333 21.86 4.19 32.92 2.10
2285 2308 5.537674 GTCATTGCCTTCCAATTCCATATCT 59.462 40.000 0.00 0.00 42.15 1.98
2286 2309 5.537674 AGTCATTGCCTTCCAATTCCATATC 59.462 40.000 0.00 0.00 42.15 1.63
2297 2320 4.058124 GTTCCAAAAAGTCATTGCCTTCC 58.942 43.478 0.00 0.00 0.00 3.46
2305 2328 5.366477 ACAAGGGATTGTTCCAAAAAGTCAT 59.634 36.000 0.00 0.00 44.60 3.06
2391 2414 4.556302 GCTGAAGCTCAAGGTCTTCAAAAG 60.556 45.833 6.21 0.00 45.36 2.27
2570 2593 2.041081 CTGGGGTTCTACCATGGAACAA 59.959 50.000 21.47 4.23 43.20 2.83
2571 2594 1.633432 CTGGGGTTCTACCATGGAACA 59.367 52.381 21.47 1.69 43.20 3.18
2589 2612 8.693504 CACAAATAAGTTTATCACAAAGTGCTG 58.306 33.333 0.00 0.00 32.98 4.41
2616 2639 0.100503 GTTGCATGACAATACCGGCC 59.899 55.000 0.00 0.00 41.27 6.13
2620 2643 8.700722 TCATATTTTTGTTGCATGACAATACC 57.299 30.769 4.85 0.00 41.27 2.73
2622 2645 9.235537 CGATCATATTTTTGTTGCATGACAATA 57.764 29.630 4.85 0.00 41.27 1.90
2649 2675 6.968131 TCAAACAGCTGTACATCATCTTAC 57.032 37.500 22.01 0.00 0.00 2.34
2661 2687 5.865552 GTCATAATGCAAATCAAACAGCTGT 59.134 36.000 15.25 15.25 0.00 4.40
2716 2742 4.588528 ACACATCTACCAAATTTGCCTGTT 59.411 37.500 12.92 0.00 0.00 3.16
2756 2782 9.410556 ACAAAATAATGCTATGACTCAAAACAC 57.589 29.630 0.00 0.00 0.00 3.32
2796 2822 9.956640 ATTGACTACGGTACTACTAGCTTATAT 57.043 33.333 0.00 0.00 0.00 0.86
2799 2825 8.424918 ACTATTGACTACGGTACTACTAGCTTA 58.575 37.037 0.00 0.00 0.00 3.09
2800 2826 7.278875 ACTATTGACTACGGTACTACTAGCTT 58.721 38.462 0.00 0.00 0.00 3.74
2802 2828 7.870445 AGTACTATTGACTACGGTACTACTAGC 59.130 40.741 0.00 0.00 40.49 3.42
2803 2829 9.190858 CAGTACTATTGACTACGGTACTACTAG 57.809 40.741 0.00 0.00 40.36 2.57
2804 2830 7.653713 GCAGTACTATTGACTACGGTACTACTA 59.346 40.741 0.00 0.00 40.36 1.82
2805 2831 6.481644 GCAGTACTATTGACTACGGTACTACT 59.518 42.308 0.00 0.00 40.36 2.57
2806 2832 6.258727 TGCAGTACTATTGACTACGGTACTAC 59.741 42.308 0.00 0.00 40.36 2.73
2812 2841 4.933330 ACATGCAGTACTATTGACTACGG 58.067 43.478 0.00 0.00 0.00 4.02
2813 2842 5.805486 ACAACATGCAGTACTATTGACTACG 59.195 40.000 0.00 0.00 0.00 3.51
2816 2845 5.551233 ACACAACATGCAGTACTATTGACT 58.449 37.500 0.00 0.00 0.00 3.41
2820 2849 5.530915 ACACAACACAACATGCAGTACTATT 59.469 36.000 0.00 0.00 0.00 1.73
2824 2853 3.691049 ACACAACACAACATGCAGTAC 57.309 42.857 0.00 0.00 0.00 2.73
2836 2865 4.929808 CCTCCAGTATGTTCTACACAACAC 59.070 45.833 0.00 0.00 39.09 3.32
2848 2877 5.076873 GCTTCTAGAGATCCTCCAGTATGT 58.923 45.833 0.00 0.00 0.00 2.29
2952 2984 8.786826 TGGACATGTATTAAACTGGTCTTTAG 57.213 34.615 0.00 0.00 34.38 1.85
2957 2989 6.093633 GGACTTGGACATGTATTAAACTGGTC 59.906 42.308 0.00 0.00 33.66 4.02
2973 3005 1.388547 TTGCACAGTTGGACTTGGAC 58.611 50.000 0.00 0.00 0.00 4.02
2979 3011 4.036262 TGAACTTGTATTGCACAGTTGGAC 59.964 41.667 0.00 0.00 38.72 4.02
2980 3012 4.203226 TGAACTTGTATTGCACAGTTGGA 58.797 39.130 0.00 0.00 38.72 3.53
2981 3013 4.566545 TGAACTTGTATTGCACAGTTGG 57.433 40.909 0.00 0.00 38.72 3.77
2982 3014 5.581605 ACTTGAACTTGTATTGCACAGTTG 58.418 37.500 0.00 0.00 38.72 3.16
2983 3015 5.835113 ACTTGAACTTGTATTGCACAGTT 57.165 34.783 0.00 0.00 38.72 3.16
2984 3016 5.356751 TCAACTTGAACTTGTATTGCACAGT 59.643 36.000 0.00 0.00 38.72 3.55
2996 3028 7.973944 GGACTAACAAACAATCAACTTGAACTT 59.026 33.333 0.00 0.00 38.29 2.66
2999 3031 6.459024 CCGGACTAACAAACAATCAACTTGAA 60.459 38.462 0.00 0.00 38.29 2.69
3017 3049 4.202377 TGAAATGGAACTTCAACCGGACTA 60.202 41.667 9.46 0.00 0.00 2.59
3034 3066 2.979813 GCGTGTTAAGGCAAGTGAAATG 59.020 45.455 0.00 0.00 37.15 2.32
3043 3075 3.046968 TGAATGTAGCGTGTTAAGGCA 57.953 42.857 0.00 0.00 39.70 4.75
3045 3077 5.938322 ACAAATGAATGTAGCGTGTTAAGG 58.062 37.500 0.00 0.00 0.00 2.69
3058 3090 6.813152 GGTATCAAAACCAGGACAAATGAATG 59.187 38.462 0.00 0.00 39.50 2.67
3072 3104 3.013921 TCATTCGGCTGGTATCAAAACC 58.986 45.455 0.00 0.00 40.19 3.27
3077 3109 4.946772 TGAAATTTCATTCGGCTGGTATCA 59.053 37.500 16.91 0.00 31.01 2.15
3078 3110 5.163663 TGTGAAATTTCATTCGGCTGGTATC 60.164 40.000 23.05 6.86 39.73 2.24
3079 3111 4.704540 TGTGAAATTTCATTCGGCTGGTAT 59.295 37.500 23.05 0.00 39.73 2.73
3101 3133 8.991026 TCAAAAGGAATAGCATTGTGAAAAATG 58.009 29.630 0.00 0.00 31.97 2.32
3160 3192 4.899502 TCAAAACTGAAACCTGCCAAAAA 58.100 34.783 0.00 0.00 0.00 1.94
3164 3196 2.951642 CTCTCAAAACTGAAACCTGCCA 59.048 45.455 0.00 0.00 0.00 4.92
3184 3216 3.195825 CCCTGATCTTGTTAACCTCGTCT 59.804 47.826 2.48 0.00 0.00 4.18
3185 3217 3.522553 CCCTGATCTTGTTAACCTCGTC 58.477 50.000 2.48 0.00 0.00 4.20
3186 3218 2.354805 GCCCTGATCTTGTTAACCTCGT 60.355 50.000 2.48 0.00 0.00 4.18
3187 3219 2.093447 AGCCCTGATCTTGTTAACCTCG 60.093 50.000 2.48 0.00 0.00 4.63
3188 3220 3.274288 CAGCCCTGATCTTGTTAACCTC 58.726 50.000 2.48 0.00 0.00 3.85
3189 3221 2.619074 GCAGCCCTGATCTTGTTAACCT 60.619 50.000 2.48 0.00 0.00 3.50
3190 3222 1.745653 GCAGCCCTGATCTTGTTAACC 59.254 52.381 2.48 0.00 0.00 2.85
3191 3223 2.421424 CAGCAGCCCTGATCTTGTTAAC 59.579 50.000 0.00 0.00 44.64 2.01
3192 3224 2.305635 TCAGCAGCCCTGATCTTGTTAA 59.694 45.455 0.00 0.00 45.44 2.01
3193 3225 1.908619 TCAGCAGCCCTGATCTTGTTA 59.091 47.619 0.00 0.00 45.44 2.41
3194 3226 0.694771 TCAGCAGCCCTGATCTTGTT 59.305 50.000 0.00 0.00 45.44 2.83
3195 3227 2.380365 TCAGCAGCCCTGATCTTGT 58.620 52.632 0.00 0.00 45.44 3.16
3202 3234 2.124403 GGTCCATCAGCAGCCCTG 60.124 66.667 0.00 0.00 43.17 4.45
3203 3235 2.233566 TTGGTCCATCAGCAGCCCT 61.234 57.895 0.00 0.00 32.85 5.19
3204 3236 2.048603 GTTGGTCCATCAGCAGCCC 61.049 63.158 0.00 0.00 32.85 5.19
3205 3237 0.253044 TAGTTGGTCCATCAGCAGCC 59.747 55.000 2.77 0.00 34.40 4.85
3206 3238 1.065854 AGTAGTTGGTCCATCAGCAGC 60.066 52.381 2.77 0.00 32.85 5.25
3207 3239 3.055530 AGAAGTAGTTGGTCCATCAGCAG 60.056 47.826 2.77 0.00 32.85 4.24
3208 3240 2.906389 AGAAGTAGTTGGTCCATCAGCA 59.094 45.455 2.77 0.00 0.00 4.41
3209 3241 3.618690 AGAAGTAGTTGGTCCATCAGC 57.381 47.619 2.77 0.00 0.00 4.26
3210 3242 5.152623 TCAAGAAGTAGTTGGTCCATCAG 57.847 43.478 2.77 0.00 0.00 2.90
3211 3243 5.624509 CGATCAAGAAGTAGTTGGTCCATCA 60.625 44.000 2.77 0.00 32.27 3.07
3212 3244 4.806247 CGATCAAGAAGTAGTTGGTCCATC 59.194 45.833 0.00 0.00 32.27 3.51
3213 3245 4.759782 CGATCAAGAAGTAGTTGGTCCAT 58.240 43.478 0.00 0.00 32.27 3.41
3214 3246 3.616560 GCGATCAAGAAGTAGTTGGTCCA 60.617 47.826 0.00 0.00 32.27 4.02
3215 3247 2.930682 GCGATCAAGAAGTAGTTGGTCC 59.069 50.000 0.00 0.00 32.27 4.46
3216 3248 2.930682 GGCGATCAAGAAGTAGTTGGTC 59.069 50.000 0.00 0.00 32.55 4.02
3217 3249 2.674177 CGGCGATCAAGAAGTAGTTGGT 60.674 50.000 0.00 0.00 0.00 3.67
3218 3250 1.927174 CGGCGATCAAGAAGTAGTTGG 59.073 52.381 0.00 0.00 0.00 3.77
3219 3251 2.854777 CTCGGCGATCAAGAAGTAGTTG 59.145 50.000 11.27 0.00 0.00 3.16
3220 3252 2.753452 TCTCGGCGATCAAGAAGTAGTT 59.247 45.455 11.27 0.00 0.00 2.24
3221 3253 2.366533 TCTCGGCGATCAAGAAGTAGT 58.633 47.619 11.27 0.00 0.00 2.73
3222 3254 3.422417 TTCTCGGCGATCAAGAAGTAG 57.578 47.619 11.27 0.00 0.00 2.57
3223 3255 3.861276 TTTCTCGGCGATCAAGAAGTA 57.139 42.857 11.27 0.00 31.16 2.24
3224 3256 2.743636 TTTCTCGGCGATCAAGAAGT 57.256 45.000 11.27 0.00 31.16 3.01
3225 3257 3.452474 AGATTTCTCGGCGATCAAGAAG 58.548 45.455 11.27 0.00 31.16 2.85
3226 3258 3.526931 AGATTTCTCGGCGATCAAGAA 57.473 42.857 11.27 7.72 0.00 2.52
3227 3259 3.448686 GAAGATTTCTCGGCGATCAAGA 58.551 45.455 11.27 0.14 0.00 3.02
3228 3260 2.541762 GGAAGATTTCTCGGCGATCAAG 59.458 50.000 11.27 0.00 0.00 3.02
3229 3261 2.093711 TGGAAGATTTCTCGGCGATCAA 60.094 45.455 11.27 6.71 0.00 2.57
3230 3262 1.480545 TGGAAGATTTCTCGGCGATCA 59.519 47.619 11.27 0.00 0.00 2.92
3231 3263 1.861575 GTGGAAGATTTCTCGGCGATC 59.138 52.381 11.27 4.86 0.00 3.69
3232 3264 1.482593 AGTGGAAGATTTCTCGGCGAT 59.517 47.619 11.27 0.00 0.00 4.58
3233 3265 0.895530 AGTGGAAGATTTCTCGGCGA 59.104 50.000 10.14 10.14 0.00 5.54
3234 3266 1.394917 CAAGTGGAAGATTTCTCGGCG 59.605 52.381 0.00 0.00 0.00 6.46
3235 3267 1.740025 CCAAGTGGAAGATTTCTCGGC 59.260 52.381 0.00 0.00 37.39 5.54
3236 3268 3.334583 TCCAAGTGGAAGATTTCTCGG 57.665 47.619 0.00 0.00 42.18 4.63
3247 3279 3.644966 ACAAACTCAAGTCCAAGTGGA 57.355 42.857 0.00 0.00 43.08 4.02
3248 3280 3.251004 GCTACAAACTCAAGTCCAAGTGG 59.749 47.826 0.00 0.00 0.00 4.00
3249 3281 3.876914 TGCTACAAACTCAAGTCCAAGTG 59.123 43.478 0.00 0.00 0.00 3.16
3250 3282 4.130118 CTGCTACAAACTCAAGTCCAAGT 58.870 43.478 0.00 0.00 0.00 3.16
3251 3283 4.024556 CACTGCTACAAACTCAAGTCCAAG 60.025 45.833 0.00 0.00 0.00 3.61
3252 3284 3.876914 CACTGCTACAAACTCAAGTCCAA 59.123 43.478 0.00 0.00 0.00 3.53
3253 3285 3.118408 ACACTGCTACAAACTCAAGTCCA 60.118 43.478 0.00 0.00 0.00 4.02
3254 3286 3.467803 ACACTGCTACAAACTCAAGTCC 58.532 45.455 0.00 0.00 0.00 3.85
3255 3287 5.266242 CAAACACTGCTACAAACTCAAGTC 58.734 41.667 0.00 0.00 0.00 3.01
3256 3288 5.235305 CAAACACTGCTACAAACTCAAGT 57.765 39.130 0.00 0.00 0.00 3.16
3270 3302 4.836125 AACACATAGAAGGCAAACACTG 57.164 40.909 0.00 0.00 0.00 3.66
3271 3303 4.037923 CCAAACACATAGAAGGCAAACACT 59.962 41.667 0.00 0.00 0.00 3.55
3272 3304 4.037446 TCCAAACACATAGAAGGCAAACAC 59.963 41.667 0.00 0.00 0.00 3.32
3273 3305 4.211125 TCCAAACACATAGAAGGCAAACA 58.789 39.130 0.00 0.00 0.00 2.83
3274 3306 4.846779 TCCAAACACATAGAAGGCAAAC 57.153 40.909 0.00 0.00 0.00 2.93
3275 3307 7.716799 AATATCCAAACACATAGAAGGCAAA 57.283 32.000 0.00 0.00 0.00 3.68
3276 3308 8.052748 AGTAATATCCAAACACATAGAAGGCAA 58.947 33.333 0.00 0.00 0.00 4.52
3277 3309 7.573710 AGTAATATCCAAACACATAGAAGGCA 58.426 34.615 0.00 0.00 0.00 4.75
3278 3310 8.989980 GTAGTAATATCCAAACACATAGAAGGC 58.010 37.037 0.00 0.00 0.00 4.35
3279 3311 9.490379 GGTAGTAATATCCAAACACATAGAAGG 57.510 37.037 0.00 0.00 0.00 3.46
3286 3318 9.209048 ACATCTAGGTAGTAATATCCAAACACA 57.791 33.333 0.00 0.00 0.00 3.72
3289 3321 9.857957 GCTACATCTAGGTAGTAATATCCAAAC 57.142 37.037 3.98 0.00 42.18 2.93
3290 3322 9.824216 AGCTACATCTAGGTAGTAATATCCAAA 57.176 33.333 3.98 0.00 42.18 3.28
3291 3323 9.244292 CAGCTACATCTAGGTAGTAATATCCAA 57.756 37.037 3.98 0.00 42.18 3.53
3292 3324 7.834681 CCAGCTACATCTAGGTAGTAATATCCA 59.165 40.741 3.98 0.00 42.18 3.41
3293 3325 8.053963 TCCAGCTACATCTAGGTAGTAATATCC 58.946 40.741 3.98 0.00 42.18 2.59
3294 3326 9.635404 ATCCAGCTACATCTAGGTAGTAATATC 57.365 37.037 3.98 0.00 42.18 1.63
3295 3327 9.635404 GATCCAGCTACATCTAGGTAGTAATAT 57.365 37.037 3.98 0.00 42.18 1.28
3296 3328 7.769507 CGATCCAGCTACATCTAGGTAGTAATA 59.230 40.741 3.98 0.00 42.18 0.98
3297 3329 6.600032 CGATCCAGCTACATCTAGGTAGTAAT 59.400 42.308 3.98 0.00 42.18 1.89
3298 3330 5.938710 CGATCCAGCTACATCTAGGTAGTAA 59.061 44.000 3.98 0.00 42.18 2.24
3299 3331 5.489249 CGATCCAGCTACATCTAGGTAGTA 58.511 45.833 3.98 0.57 42.18 1.82
3300 3332 4.328536 CGATCCAGCTACATCTAGGTAGT 58.671 47.826 3.98 0.00 42.18 2.73
3301 3333 3.127895 GCGATCCAGCTACATCTAGGTAG 59.872 52.174 0.00 0.00 42.88 3.18
3302 3334 3.082548 GCGATCCAGCTACATCTAGGTA 58.917 50.000 0.00 0.00 0.00 3.08
3303 3335 1.889829 GCGATCCAGCTACATCTAGGT 59.110 52.381 0.00 0.00 0.00 3.08
3304 3336 1.889170 TGCGATCCAGCTACATCTAGG 59.111 52.381 0.00 0.00 38.13 3.02
3305 3337 3.865011 ATGCGATCCAGCTACATCTAG 57.135 47.619 0.00 0.00 38.13 2.43
3306 3338 5.921962 ATTATGCGATCCAGCTACATCTA 57.078 39.130 0.00 0.00 38.13 1.98
3307 3339 4.815533 ATTATGCGATCCAGCTACATCT 57.184 40.909 0.00 0.00 38.13 2.90
3308 3340 7.254590 GGAATAATTATGCGATCCAGCTACATC 60.255 40.741 8.46 0.00 38.13 3.06
3309 3341 6.540189 GGAATAATTATGCGATCCAGCTACAT 59.460 38.462 8.46 0.00 38.13 2.29
3310 3342 5.874810 GGAATAATTATGCGATCCAGCTACA 59.125 40.000 8.46 0.00 38.13 2.74
3311 3343 6.036517 CAGGAATAATTATGCGATCCAGCTAC 59.963 42.308 13.84 0.00 38.13 3.58
3312 3344 6.108687 CAGGAATAATTATGCGATCCAGCTA 58.891 40.000 13.84 0.00 38.13 3.32
3313 3345 4.940046 CAGGAATAATTATGCGATCCAGCT 59.060 41.667 13.84 0.00 38.13 4.24
3314 3346 4.697352 ACAGGAATAATTATGCGATCCAGC 59.303 41.667 13.84 0.00 37.71 4.85
3315 3347 5.702670 ACACAGGAATAATTATGCGATCCAG 59.297 40.000 13.84 9.56 0.00 3.86
3316 3348 5.620206 ACACAGGAATAATTATGCGATCCA 58.380 37.500 13.84 0.00 0.00 3.41
3317 3349 6.874134 ACTACACAGGAATAATTATGCGATCC 59.126 38.462 0.00 2.41 0.00 3.36
3318 3350 7.891183 ACTACACAGGAATAATTATGCGATC 57.109 36.000 0.00 0.00 0.00 3.69
3319 3351 8.559536 CAAACTACACAGGAATAATTATGCGAT 58.440 33.333 0.00 0.00 0.00 4.58
3320 3352 7.466725 GCAAACTACACAGGAATAATTATGCGA 60.467 37.037 0.00 0.00 0.00 5.10
3321 3353 6.632834 GCAAACTACACAGGAATAATTATGCG 59.367 38.462 0.00 0.00 0.00 4.73
3322 3354 7.479980 TGCAAACTACACAGGAATAATTATGC 58.520 34.615 0.00 0.00 0.00 3.14
3334 3366 3.668447 AGTCATCCTGCAAACTACACAG 58.332 45.455 0.00 0.00 0.00 3.66
3335 3367 3.769739 AGTCATCCTGCAAACTACACA 57.230 42.857 0.00 0.00 0.00 3.72
3336 3368 5.643777 ACATAAGTCATCCTGCAAACTACAC 59.356 40.000 0.00 0.00 0.00 2.90
3337 3369 5.804639 ACATAAGTCATCCTGCAAACTACA 58.195 37.500 0.00 0.00 0.00 2.74
3338 3370 6.149474 ACAACATAAGTCATCCTGCAAACTAC 59.851 38.462 0.00 0.00 0.00 2.73
3339 3371 6.149308 CACAACATAAGTCATCCTGCAAACTA 59.851 38.462 0.00 0.00 0.00 2.24
3340 3372 5.048504 CACAACATAAGTCATCCTGCAAACT 60.049 40.000 0.00 0.00 0.00 2.66
3341 3373 5.156355 CACAACATAAGTCATCCTGCAAAC 58.844 41.667 0.00 0.00 0.00 2.93
3342 3374 4.826733 ACACAACATAAGTCATCCTGCAAA 59.173 37.500 0.00 0.00 0.00 3.68
3343 3375 4.397420 ACACAACATAAGTCATCCTGCAA 58.603 39.130 0.00 0.00 0.00 4.08
3344 3376 4.019792 ACACAACATAAGTCATCCTGCA 57.980 40.909 0.00 0.00 0.00 4.41
3345 3377 6.149474 AGTTAACACAACATAAGTCATCCTGC 59.851 38.462 8.61 0.00 0.00 4.85
3346 3378 7.387673 TCAGTTAACACAACATAAGTCATCCTG 59.612 37.037 8.61 0.00 0.00 3.86
3347 3379 7.450074 TCAGTTAACACAACATAAGTCATCCT 58.550 34.615 8.61 0.00 0.00 3.24
3348 3380 7.667043 TCAGTTAACACAACATAAGTCATCC 57.333 36.000 8.61 0.00 0.00 3.51
3351 3383 8.995220 GGTTATCAGTTAACACAACATAAGTCA 58.005 33.333 8.61 0.00 41.74 3.41
3352 3384 9.216117 AGGTTATCAGTTAACACAACATAAGTC 57.784 33.333 8.61 0.07 41.74 3.01
3357 3389 9.959721 ATCTTAGGTTATCAGTTAACACAACAT 57.040 29.630 8.61 6.27 41.74 2.71
3358 3390 9.214957 CATCTTAGGTTATCAGTTAACACAACA 57.785 33.333 8.61 0.00 41.74 3.33
3359 3391 9.216117 ACATCTTAGGTTATCAGTTAACACAAC 57.784 33.333 8.61 5.85 41.74 3.32
3360 3392 9.787435 AACATCTTAGGTTATCAGTTAACACAA 57.213 29.630 8.61 0.00 41.74 3.33
3395 3427 1.909986 AGAGACTTACTTGGGCTTCCC 59.090 52.381 0.00 0.00 45.71 3.97
3396 3428 2.835156 AGAGAGACTTACTTGGGCTTCC 59.165 50.000 0.00 0.00 0.00 3.46
3397 3429 5.862678 ATAGAGAGACTTACTTGGGCTTC 57.137 43.478 0.00 0.00 0.00 3.86
3398 3430 5.961421 AGAATAGAGAGACTTACTTGGGCTT 59.039 40.000 0.00 0.00 0.00 4.35
3399 3431 5.524535 AGAATAGAGAGACTTACTTGGGCT 58.475 41.667 0.00 0.00 0.00 5.19
3400 3432 5.221362 GGAGAATAGAGAGACTTACTTGGGC 60.221 48.000 0.00 0.00 0.00 5.36
3401 3433 6.133356 AGGAGAATAGAGAGACTTACTTGGG 58.867 44.000 0.00 0.00 0.00 4.12
3402 3434 7.468084 CGAAGGAGAATAGAGAGACTTACTTGG 60.468 44.444 0.00 0.00 0.00 3.61
3403 3435 7.281324 TCGAAGGAGAATAGAGAGACTTACTTG 59.719 40.741 0.00 0.00 0.00 3.16
3404 3436 7.281549 GTCGAAGGAGAATAGAGAGACTTACTT 59.718 40.741 0.00 0.00 0.00 2.24
3405 3437 6.764560 GTCGAAGGAGAATAGAGAGACTTACT 59.235 42.308 0.00 0.00 0.00 2.24
3406 3438 6.764560 AGTCGAAGGAGAATAGAGAGACTTAC 59.235 42.308 0.00 0.00 33.27 2.34
3407 3439 6.891388 AGTCGAAGGAGAATAGAGAGACTTA 58.109 40.000 0.00 0.00 33.27 2.24
3408 3440 5.751586 AGTCGAAGGAGAATAGAGAGACTT 58.248 41.667 0.00 0.00 33.27 3.01
3409 3441 5.367945 AGTCGAAGGAGAATAGAGAGACT 57.632 43.478 0.00 0.00 0.00 3.24
3410 3442 7.739498 AATAGTCGAAGGAGAATAGAGAGAC 57.261 40.000 0.00 0.00 0.00 3.36
3411 3443 7.972832 GAATAGTCGAAGGAGAATAGAGAGA 57.027 40.000 0.00 0.00 0.00 3.10
3428 3460 4.098196 GTCCTGCTATATCCCCGAATAGTC 59.902 50.000 0.00 0.00 0.00 2.59
3429 3461 4.024670 GTCCTGCTATATCCCCGAATAGT 58.975 47.826 0.00 0.00 0.00 2.12
3430 3462 4.282496 AGTCCTGCTATATCCCCGAATAG 58.718 47.826 0.00 0.00 0.00 1.73
3431 3463 4.279145 GAGTCCTGCTATATCCCCGAATA 58.721 47.826 0.00 0.00 0.00 1.75
3432 3464 3.100671 GAGTCCTGCTATATCCCCGAAT 58.899 50.000 0.00 0.00 0.00 3.34
3433 3465 2.526432 GAGTCCTGCTATATCCCCGAA 58.474 52.381 0.00 0.00 0.00 4.30
3434 3466 2.217510 GAGTCCTGCTATATCCCCGA 57.782 55.000 0.00 0.00 0.00 5.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.