Multiple sequence alignment - TraesCS4D01G100000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G100000 chr4D 100.000 3541 0 0 1 3541 77119175 77122715 0.000000e+00 6540.0
1 TraesCS4D01G100000 chr4D 91.511 801 40 14 802 1591 76600335 76599552 0.000000e+00 1077.0
2 TraesCS4D01G100000 chr4D 92.481 399 25 4 2134 2528 76599447 76599050 1.850000e-157 566.0
3 TraesCS4D01G100000 chr4D 100.000 54 0 0 1605 1658 76599559 76599506 2.250000e-17 100.0
4 TraesCS4D01G100000 chr4B 93.789 1771 86 13 774 2528 108672047 108670285 0.000000e+00 2639.0
5 TraesCS4D01G100000 chr4B 92.598 635 43 4 101 734 529408218 529408849 0.000000e+00 909.0
6 TraesCS4D01G100000 chr4B 77.778 162 26 7 3235 3389 3231270 3231112 1.350000e-14 91.6
7 TraesCS4D01G100000 chr4A 93.761 1763 62 19 783 2528 511187730 511189461 0.000000e+00 2603.0
8 TraesCS4D01G100000 chr4A 87.324 71 5 4 2592 2658 7440638 7440568 1.050000e-10 78.7
9 TraesCS4D01G100000 chr4A 100.000 28 0 0 2411 2438 697387655 697387682 6.000000e-03 52.8
10 TraesCS4D01G100000 chr5D 95.118 635 31 0 101 735 325964521 325963887 0.000000e+00 1002.0
11 TraesCS4D01G100000 chr5D 77.115 1040 190 30 1017 2017 398576944 398577974 3.090000e-155 558.0
12 TraesCS4D01G100000 chr5D 93.396 106 7 0 1 106 325964983 325964878 1.320000e-34 158.0
13 TraesCS4D01G100000 chr5D 98.000 50 0 1 2613 2662 494775486 494775534 6.300000e-13 86.1
14 TraesCS4D01G100000 chr6D 94.514 638 34 1 101 738 71518882 71519518 0.000000e+00 983.0
15 TraesCS4D01G100000 chr6D 79.697 330 52 14 3223 3541 89723831 89724156 1.280000e-54 224.0
16 TraesCS4D01G100000 chr6D 76.225 408 64 22 3152 3541 16845654 16846046 6.040000e-43 185.0
17 TraesCS4D01G100000 chr6D 95.146 103 5 0 1 103 71518420 71518522 2.830000e-36 163.0
18 TraesCS4D01G100000 chr6B 93.082 636 41 2 102 734 163546272 163545637 0.000000e+00 928.0
19 TraesCS4D01G100000 chr6B 83.468 248 36 5 2867 3112 317539434 317539678 3.560000e-55 226.0
20 TraesCS4D01G100000 chr6B 72.286 350 61 28 3176 3506 269543868 269544200 3.790000e-10 76.8
21 TraesCS4D01G100000 chr6B 94.595 37 1 1 2529 2564 201290 201254 4.940000e-04 56.5
22 TraesCS4D01G100000 chr5B 92.587 634 45 2 101 734 358014761 358015392 0.000000e+00 909.0
23 TraesCS4D01G100000 chr5B 90.484 641 49 5 101 734 608354899 608354264 0.000000e+00 835.0
24 TraesCS4D01G100000 chr5B 79.037 706 104 28 2867 3541 456631869 456631177 9.020000e-121 444.0
25 TraesCS4D01G100000 chr5B 94.118 85 5 0 2864 2948 288316695 288316779 2.870000e-26 130.0
26 TraesCS4D01G100000 chr7B 92.465 637 45 3 101 734 115233250 115232614 0.000000e+00 907.0
27 TraesCS4D01G100000 chr7B 78.417 417 51 16 3139 3541 683474159 683473768 5.910000e-58 235.0
28 TraesCS4D01G100000 chr7B 93.902 82 5 0 2867 2948 329365236 329365317 1.330000e-24 124.0
29 TraesCS4D01G100000 chr2B 91.483 634 53 1 101 734 21205789 21205157 0.000000e+00 870.0
30 TraesCS4D01G100000 chr2B 80.907 419 55 18 3139 3541 66204131 66203722 1.230000e-79 307.0
31 TraesCS4D01G100000 chr2B 84.000 250 30 8 2867 3112 772222709 772222466 7.640000e-57 231.0
32 TraesCS4D01G100000 chr2B 76.863 255 38 19 3141 3382 16329568 16329814 1.330000e-24 124.0
33 TraesCS4D01G100000 chr2B 96.000 50 2 0 2607 2656 386286379 386286330 8.150000e-12 82.4
34 TraesCS4D01G100000 chr2B 95.556 45 2 0 2615 2659 393999940 393999896 4.900000e-09 73.1
35 TraesCS4D01G100000 chr7D 91.219 558 43 4 184 735 608433204 608433761 0.000000e+00 754.0
36 TraesCS4D01G100000 chr7D 81.600 250 38 8 2871 3117 309757520 309757276 2.160000e-47 200.0
37 TraesCS4D01G100000 chr7D 87.379 103 13 0 2867 2969 602879111 602879009 6.210000e-23 119.0
38 TraesCS4D01G100000 chr7D 74.059 239 42 17 3157 3384 1848034 1848263 2.930000e-11 80.5
39 TraesCS4D01G100000 chr5A 78.244 1025 190 23 1017 2017 503667650 503668665 8.340000e-176 627.0
40 TraesCS4D01G100000 chr5A 91.379 58 3 2 2609 2665 408199486 408199430 1.050000e-10 78.7
41 TraesCS4D01G100000 chr3D 83.642 703 75 24 2864 3538 477631827 477632517 3.000000e-175 625.0
42 TraesCS4D01G100000 chr3B 77.077 698 96 37 2867 3538 728512293 728511634 9.410000e-91 344.0
43 TraesCS4D01G100000 chr2A 79.075 411 53 21 3139 3541 749863215 749862830 5.870000e-63 252.0
44 TraesCS4D01G100000 chr2A 85.841 113 12 3 2867 2977 39584068 39583958 2.230000e-22 117.0
45 TraesCS4D01G100000 chr7A 78.313 415 58 20 3141 3541 694537604 694537208 4.570000e-59 239.0
46 TraesCS4D01G100000 chr1A 73.684 703 112 44 2898 3538 76503051 76503742 4.630000e-49 206.0
47 TraesCS4D01G100000 chr1A 92.593 54 4 0 2615 2668 95850317 95850264 1.050000e-10 78.7
48 TraesCS4D01G100000 chr1A 89.831 59 6 0 2615 2673 428667992 428667934 3.790000e-10 76.8
49 TraesCS4D01G100000 chr1B 89.706 68 4 3 2601 2665 461244594 461244527 2.270000e-12 84.2
50 TraesCS4D01G100000 chr1B 76.282 156 21 11 3285 3431 273496281 273496429 6.340000e-08 69.4
51 TraesCS4D01G100000 chr2D 95.556 45 2 0 2615 2659 324914842 324914798 4.900000e-09 73.1
52 TraesCS4D01G100000 chr2D 100.000 29 0 0 2529 2557 606589094 606589122 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G100000 chr4D 77119175 77122715 3540 False 6540 6540 100.000 1 3541 1 chr4D.!!$F1 3540
1 TraesCS4D01G100000 chr4D 76599050 76600335 1285 True 581 1077 94.664 802 2528 3 chr4D.!!$R1 1726
2 TraesCS4D01G100000 chr4B 108670285 108672047 1762 True 2639 2639 93.789 774 2528 1 chr4B.!!$R2 1754
3 TraesCS4D01G100000 chr4B 529408218 529408849 631 False 909 909 92.598 101 734 1 chr4B.!!$F1 633
4 TraesCS4D01G100000 chr4A 511187730 511189461 1731 False 2603 2603 93.761 783 2528 1 chr4A.!!$F1 1745
5 TraesCS4D01G100000 chr5D 325963887 325964983 1096 True 580 1002 94.257 1 735 2 chr5D.!!$R1 734
6 TraesCS4D01G100000 chr5D 398576944 398577974 1030 False 558 558 77.115 1017 2017 1 chr5D.!!$F1 1000
7 TraesCS4D01G100000 chr6D 71518420 71519518 1098 False 573 983 94.830 1 738 2 chr6D.!!$F3 737
8 TraesCS4D01G100000 chr6B 163545637 163546272 635 True 928 928 93.082 102 734 1 chr6B.!!$R2 632
9 TraesCS4D01G100000 chr5B 358014761 358015392 631 False 909 909 92.587 101 734 1 chr5B.!!$F2 633
10 TraesCS4D01G100000 chr5B 608354264 608354899 635 True 835 835 90.484 101 734 1 chr5B.!!$R2 633
11 TraesCS4D01G100000 chr5B 456631177 456631869 692 True 444 444 79.037 2867 3541 1 chr5B.!!$R1 674
12 TraesCS4D01G100000 chr7B 115232614 115233250 636 True 907 907 92.465 101 734 1 chr7B.!!$R1 633
13 TraesCS4D01G100000 chr2B 21205157 21205789 632 True 870 870 91.483 101 734 1 chr2B.!!$R1 633
14 TraesCS4D01G100000 chr7D 608433204 608433761 557 False 754 754 91.219 184 735 1 chr7D.!!$F2 551
15 TraesCS4D01G100000 chr5A 503667650 503668665 1015 False 627 627 78.244 1017 2017 1 chr5A.!!$F1 1000
16 TraesCS4D01G100000 chr3D 477631827 477632517 690 False 625 625 83.642 2864 3538 1 chr3D.!!$F1 674
17 TraesCS4D01G100000 chr3B 728511634 728512293 659 True 344 344 77.077 2867 3538 1 chr3B.!!$R1 671
18 TraesCS4D01G100000 chr1A 76503051 76503742 691 False 206 206 73.684 2898 3538 1 chr1A.!!$F1 640

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
752 1133 0.179134 GTCTCGATGGTGGTCTTCGG 60.179 60.0 0.0 0.0 41.54 4.3 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2732 3181 0.039978 CGGACTAGCCATCGCTACAG 60.04 60.0 0.0 0.0 46.08 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 3.760035 CGAGGTACCGGCAGCACT 61.760 66.667 6.18 0.00 0.00 4.40
46 47 1.004440 GTTCCTGAAGCCTCGCACT 60.004 57.895 0.00 0.00 0.00 4.40
55 56 4.363990 CCTCGCACTGCCGTCACT 62.364 66.667 0.00 0.00 0.00 3.41
67 68 1.236616 CCGTCACTGCAGCAAATCCA 61.237 55.000 15.27 0.00 0.00 3.41
68 69 0.806868 CGTCACTGCAGCAAATCCAT 59.193 50.000 15.27 0.00 0.00 3.41
145 509 2.149803 CTCCAACCACACCGCGAGTA 62.150 60.000 8.23 0.00 0.00 2.59
260 630 1.001641 GCACCTCCATCCACTGCTT 60.002 57.895 0.00 0.00 0.00 3.91
384 756 3.408229 CCACCTCCATGGCAGAGT 58.592 61.111 6.96 0.00 40.22 3.24
459 834 1.757306 CACAACAGCCTCCTGACCT 59.243 57.895 0.00 0.00 41.77 3.85
478 853 2.280592 GTTCCTTCGCACCACCGT 60.281 61.111 0.00 0.00 0.00 4.83
594 969 3.716195 CCTGTCATGGGGGCGTCA 61.716 66.667 0.00 0.00 0.00 4.35
742 1123 2.818132 GGGAGGCAGTCTCGATGG 59.182 66.667 0.00 0.00 43.34 3.51
743 1124 2.060980 GGGAGGCAGTCTCGATGGT 61.061 63.158 0.00 0.00 43.34 3.55
744 1125 1.142748 GGAGGCAGTCTCGATGGTG 59.857 63.158 0.00 0.00 43.34 4.17
745 1126 1.142748 GAGGCAGTCTCGATGGTGG 59.857 63.158 0.00 0.00 32.18 4.61
746 1127 1.608717 GAGGCAGTCTCGATGGTGGT 61.609 60.000 0.00 0.00 32.18 4.16
747 1128 1.153549 GGCAGTCTCGATGGTGGTC 60.154 63.158 0.00 0.00 0.00 4.02
748 1129 1.608717 GGCAGTCTCGATGGTGGTCT 61.609 60.000 0.00 0.00 0.00 3.85
749 1130 0.247736 GCAGTCTCGATGGTGGTCTT 59.752 55.000 0.00 0.00 0.00 3.01
750 1131 1.737363 GCAGTCTCGATGGTGGTCTTC 60.737 57.143 0.00 0.00 0.00 2.87
751 1132 0.811915 AGTCTCGATGGTGGTCTTCG 59.188 55.000 0.00 0.00 42.26 3.79
752 1133 0.179134 GTCTCGATGGTGGTCTTCGG 60.179 60.000 0.00 0.00 41.54 4.30
753 1134 0.611062 TCTCGATGGTGGTCTTCGGT 60.611 55.000 0.00 0.00 41.54 4.69
754 1135 0.246635 CTCGATGGTGGTCTTCGGTT 59.753 55.000 0.00 0.00 41.54 4.44
755 1136 0.245539 TCGATGGTGGTCTTCGGTTC 59.754 55.000 0.00 0.00 41.54 3.62
756 1137 0.246635 CGATGGTGGTCTTCGGTTCT 59.753 55.000 0.00 0.00 38.76 3.01
757 1138 1.726853 GATGGTGGTCTTCGGTTCTG 58.273 55.000 0.00 0.00 0.00 3.02
758 1139 0.324943 ATGGTGGTCTTCGGTTCTGG 59.675 55.000 0.00 0.00 0.00 3.86
759 1140 1.671379 GGTGGTCTTCGGTTCTGGC 60.671 63.158 0.00 0.00 0.00 4.85
760 1141 1.671379 GTGGTCTTCGGTTCTGGCC 60.671 63.158 0.00 0.00 0.00 5.36
761 1142 2.144078 TGGTCTTCGGTTCTGGCCA 61.144 57.895 4.71 4.71 0.00 5.36
762 1143 1.072505 GGTCTTCGGTTCTGGCCAA 59.927 57.895 7.01 0.00 0.00 4.52
763 1144 0.536460 GGTCTTCGGTTCTGGCCAAA 60.536 55.000 7.01 1.05 0.00 3.28
764 1145 0.875059 GTCTTCGGTTCTGGCCAAAG 59.125 55.000 7.01 6.58 0.00 2.77
765 1146 0.250727 TCTTCGGTTCTGGCCAAAGG 60.251 55.000 7.01 0.00 0.00 3.11
766 1147 0.537371 CTTCGGTTCTGGCCAAAGGT 60.537 55.000 7.01 0.00 0.00 3.50
767 1148 0.536460 TTCGGTTCTGGCCAAAGGTC 60.536 55.000 7.01 0.00 0.00 3.85
768 1149 1.971695 CGGTTCTGGCCAAAGGTCC 60.972 63.158 7.01 4.48 0.00 4.46
769 1150 1.971695 GGTTCTGGCCAAAGGTCCG 60.972 63.158 7.01 0.00 0.00 4.79
770 1151 1.072505 GTTCTGGCCAAAGGTCCGA 59.927 57.895 7.01 0.00 0.00 4.55
771 1152 0.536460 GTTCTGGCCAAAGGTCCGAA 60.536 55.000 7.01 1.42 0.00 4.30
772 1153 0.183971 TTCTGGCCAAAGGTCCGAAA 59.816 50.000 7.01 0.00 0.00 3.46
825 1207 2.920524 TGTTCCGTTGCTTGGAAGTTA 58.079 42.857 5.32 0.00 45.76 2.24
826 1208 2.614983 TGTTCCGTTGCTTGGAAGTTAC 59.385 45.455 5.32 0.00 45.76 2.50
953 1349 1.342555 TTTCGTTCGTCGCGATTGAT 58.657 45.000 14.06 0.00 38.21 2.57
954 1350 1.342555 TTCGTTCGTCGCGATTGATT 58.657 45.000 14.06 0.00 38.21 2.57
955 1351 0.638242 TCGTTCGTCGCGATTGATTG 59.362 50.000 14.06 9.23 39.67 2.67
957 1353 1.058553 CGTTCGTCGCGATTGATTGAA 59.941 47.619 14.06 7.39 35.23 2.69
958 1354 2.471587 CGTTCGTCGCGATTGATTGAAA 60.472 45.455 14.06 0.00 35.23 2.69
960 1356 3.797348 TCGTCGCGATTGATTGAAAAA 57.203 38.095 14.06 0.00 0.00 1.94
961 1357 4.335082 TCGTCGCGATTGATTGAAAAAT 57.665 36.364 14.06 0.00 0.00 1.82
962 1358 4.331137 TCGTCGCGATTGATTGAAAAATC 58.669 39.130 14.06 0.00 0.00 2.17
963 1359 4.087956 CGTCGCGATTGATTGAAAAATCA 58.912 39.130 14.06 0.00 37.40 2.57
964 1360 4.029308 CGTCGCGATTGATTGAAAAATCAC 60.029 41.667 14.06 0.00 38.76 3.06
965 1361 4.029308 GTCGCGATTGATTGAAAAATCACG 60.029 41.667 14.06 7.59 38.76 4.35
983 1379 2.031560 CACGGATCTCTCTCTCGTTCTG 59.968 54.545 0.00 0.00 31.35 3.02
1294 1693 2.202557 CGTACATGAGCGACGGCA 60.203 61.111 0.00 0.00 43.41 5.69
2053 2495 3.061831 GCATGAACTCACTCGTGATTGAG 59.938 47.826 13.72 13.72 41.95 3.02
2129 2571 9.692749 TTTAATTAATTTGTTGCGTTGTATCCA 57.307 25.926 5.91 0.00 0.00 3.41
2178 2621 0.528684 CAAGGAAGACGAGATCGCCC 60.529 60.000 1.39 0.00 44.43 6.13
2201 2644 2.557056 CGAGATACCACACCATCCGTAT 59.443 50.000 0.00 0.00 0.00 3.06
2230 2673 1.482593 CTACAGGAGCCAGGGTTACAG 59.517 57.143 0.00 0.00 0.00 2.74
2239 2682 0.613260 CAGGGTTACAGGCTGCAGTA 59.387 55.000 15.89 0.68 0.00 2.74
2420 2863 4.634133 TGCCACCACGACGACGAC 62.634 66.667 15.32 0.00 42.66 4.34
2423 2866 2.175078 CACCACGACGACGACGAT 59.825 61.111 25.15 7.72 42.66 3.73
2440 2883 4.085158 CGACGATGATGATGAAGAAGAAGC 60.085 45.833 0.00 0.00 0.00 3.86
2447 2893 2.909006 TGATGAAGAAGAAGCAGACCCT 59.091 45.455 0.00 0.00 0.00 4.34
2499 2945 1.078708 GACCTCCGCGGGATTTTCA 60.079 57.895 27.83 2.05 36.97 2.69
2501 2947 0.834612 ACCTCCGCGGGATTTTCATA 59.165 50.000 27.83 0.26 36.97 2.15
2528 2977 0.041135 GGCGGAAGAGACTATCGTCG 60.041 60.000 0.00 0.00 44.93 5.12
2529 2978 0.657951 GCGGAAGAGACTATCGTCGC 60.658 60.000 0.00 0.00 44.93 5.19
2530 2979 0.656259 CGGAAGAGACTATCGTCGCA 59.344 55.000 4.03 0.00 44.93 5.10
2531 2980 1.063616 CGGAAGAGACTATCGTCGCAA 59.936 52.381 4.03 0.00 44.93 4.85
2532 2981 2.477357 CGGAAGAGACTATCGTCGCAAA 60.477 50.000 4.03 0.00 44.93 3.68
2533 2982 3.508762 GGAAGAGACTATCGTCGCAAAA 58.491 45.455 4.03 0.00 44.93 2.44
2534 2983 3.924686 GGAAGAGACTATCGTCGCAAAAA 59.075 43.478 4.03 0.00 44.93 1.94
2535 2984 4.567159 GGAAGAGACTATCGTCGCAAAAAT 59.433 41.667 4.03 0.00 44.93 1.82
2536 2985 5.456192 AAGAGACTATCGTCGCAAAAATG 57.544 39.130 4.03 0.00 44.93 2.32
2537 2986 3.307242 AGAGACTATCGTCGCAAAAATGC 59.693 43.478 4.03 0.00 44.93 3.56
2538 2987 3.262420 AGACTATCGTCGCAAAAATGCT 58.738 40.909 0.00 0.00 44.93 3.79
2539 2988 4.430007 AGACTATCGTCGCAAAAATGCTA 58.570 39.130 0.00 0.00 44.93 3.49
2540 2989 4.504461 AGACTATCGTCGCAAAAATGCTAG 59.496 41.667 0.00 0.00 44.93 3.42
2541 2990 4.430007 ACTATCGTCGCAAAAATGCTAGA 58.570 39.130 0.00 0.00 0.00 2.43
2542 2991 3.658351 ATCGTCGCAAAAATGCTAGAC 57.342 42.857 0.00 0.00 0.00 2.59
2543 2992 1.388768 TCGTCGCAAAAATGCTAGACG 59.611 47.619 18.61 18.61 44.20 4.18
2544 2993 1.126113 CGTCGCAAAAATGCTAGACGT 59.874 47.619 17.28 0.00 40.82 4.34
2545 2994 2.343246 CGTCGCAAAAATGCTAGACGTA 59.657 45.455 17.28 0.00 40.82 3.57
2546 2995 3.656618 GTCGCAAAAATGCTAGACGTAC 58.343 45.455 0.00 0.00 0.00 3.67
2547 2996 3.122278 GTCGCAAAAATGCTAGACGTACA 59.878 43.478 0.00 0.00 0.00 2.90
2548 2997 3.741856 TCGCAAAAATGCTAGACGTACAA 59.258 39.130 0.00 0.00 0.00 2.41
2549 2998 4.211584 TCGCAAAAATGCTAGACGTACAAA 59.788 37.500 0.00 0.00 0.00 2.83
2550 2999 4.317291 CGCAAAAATGCTAGACGTACAAAC 59.683 41.667 0.00 0.00 0.00 2.93
2551 3000 5.209240 GCAAAAATGCTAGACGTACAAACA 58.791 37.500 0.00 0.00 0.00 2.83
2552 3001 5.683743 GCAAAAATGCTAGACGTACAAACAA 59.316 36.000 0.00 0.00 0.00 2.83
2553 3002 6.197468 GCAAAAATGCTAGACGTACAAACAAA 59.803 34.615 0.00 0.00 0.00 2.83
2554 3003 7.096230 GCAAAAATGCTAGACGTACAAACAAAT 60.096 33.333 0.00 0.00 0.00 2.32
2555 3004 9.388346 CAAAAATGCTAGACGTACAAACAAATA 57.612 29.630 0.00 0.00 0.00 1.40
2556 3005 8.944212 AAAATGCTAGACGTACAAACAAATAC 57.056 30.769 0.00 0.00 0.00 1.89
2557 3006 6.657836 ATGCTAGACGTACAAACAAATACC 57.342 37.500 0.00 0.00 0.00 2.73
2558 3007 4.622313 TGCTAGACGTACAAACAAATACCG 59.378 41.667 0.00 0.00 0.00 4.02
2559 3008 4.032104 GCTAGACGTACAAACAAATACCGG 59.968 45.833 0.00 0.00 0.00 5.28
2560 3009 3.993920 AGACGTACAAACAAATACCGGT 58.006 40.909 13.98 13.98 0.00 5.28
2561 3010 4.379652 AGACGTACAAACAAATACCGGTT 58.620 39.130 15.04 0.00 0.00 4.44
2562 3011 4.815846 AGACGTACAAACAAATACCGGTTT 59.184 37.500 15.04 0.14 37.69 3.27
2563 3012 5.296531 AGACGTACAAACAAATACCGGTTTT 59.703 36.000 15.04 8.90 35.17 2.43
2564 3013 5.272397 ACGTACAAACAAATACCGGTTTTG 58.728 37.500 26.68 26.68 39.43 2.44
2565 3014 4.146788 CGTACAAACAAATACCGGTTTTGC 59.853 41.667 27.53 14.69 37.54 3.68
2566 3015 4.394439 ACAAACAAATACCGGTTTTGCT 57.606 36.364 27.53 19.53 37.54 3.91
2567 3016 5.517322 ACAAACAAATACCGGTTTTGCTA 57.483 34.783 27.53 8.26 37.54 3.49
2568 3017 6.091718 ACAAACAAATACCGGTTTTGCTAT 57.908 33.333 27.53 17.91 37.54 2.97
2569 3018 7.216973 ACAAACAAATACCGGTTTTGCTATA 57.783 32.000 27.53 6.96 37.54 1.31
2570 3019 7.832769 ACAAACAAATACCGGTTTTGCTATAT 58.167 30.769 27.53 14.47 37.54 0.86
2571 3020 7.971722 ACAAACAAATACCGGTTTTGCTATATC 59.028 33.333 27.53 0.00 37.54 1.63
2572 3021 7.875327 AACAAATACCGGTTTTGCTATATCT 57.125 32.000 27.53 13.51 37.54 1.98
2573 3022 7.492352 ACAAATACCGGTTTTGCTATATCTC 57.508 36.000 27.53 0.00 37.54 2.75
2574 3023 7.051623 ACAAATACCGGTTTTGCTATATCTCA 58.948 34.615 27.53 4.65 37.54 3.27
2575 3024 7.226720 ACAAATACCGGTTTTGCTATATCTCAG 59.773 37.037 27.53 11.26 37.54 3.35
2576 3025 3.467803 ACCGGTTTTGCTATATCTCAGC 58.532 45.455 0.00 0.00 39.56 4.26
2577 3026 3.134804 ACCGGTTTTGCTATATCTCAGCT 59.865 43.478 0.00 0.00 39.83 4.24
2578 3027 4.344102 ACCGGTTTTGCTATATCTCAGCTA 59.656 41.667 0.00 0.00 39.83 3.32
2579 3028 4.926238 CCGGTTTTGCTATATCTCAGCTAG 59.074 45.833 0.00 0.00 39.83 3.42
2580 3029 4.387256 CGGTTTTGCTATATCTCAGCTAGC 59.613 45.833 6.62 6.62 39.83 3.42
2581 3030 5.546526 GGTTTTGCTATATCTCAGCTAGCT 58.453 41.667 12.68 12.68 39.83 3.32
2582 3031 5.994668 GGTTTTGCTATATCTCAGCTAGCTT 59.005 40.000 16.46 2.68 39.83 3.74
2583 3032 7.155328 GGTTTTGCTATATCTCAGCTAGCTTA 58.845 38.462 16.46 6.45 39.83 3.09
2584 3033 7.330700 GGTTTTGCTATATCTCAGCTAGCTTAG 59.669 40.741 16.46 17.47 39.83 2.18
2585 3034 7.767250 TTTGCTATATCTCAGCTAGCTTAGA 57.233 36.000 26.56 26.56 39.83 2.10
2586 3035 7.767250 TTGCTATATCTCAGCTAGCTTAGAA 57.233 36.000 27.72 18.45 39.83 2.10
2587 3036 7.767250 TGCTATATCTCAGCTAGCTTAGAAA 57.233 36.000 27.72 16.91 39.83 2.52
2588 3037 8.359875 TGCTATATCTCAGCTAGCTTAGAAAT 57.640 34.615 27.72 17.16 39.83 2.17
2589 3038 9.467796 TGCTATATCTCAGCTAGCTTAGAAATA 57.532 33.333 27.72 18.53 39.83 1.40
2590 3039 9.730420 GCTATATCTCAGCTAGCTTAGAAATAC 57.270 37.037 27.72 15.06 35.95 1.89
2594 3043 7.045126 TCTCAGCTAGCTTAGAAATACTTCC 57.955 40.000 23.29 0.00 31.28 3.46
2595 3044 6.836527 TCTCAGCTAGCTTAGAAATACTTCCT 59.163 38.462 23.29 0.00 31.28 3.36
2596 3045 7.013846 TCTCAGCTAGCTTAGAAATACTTCCTC 59.986 40.741 23.29 0.00 31.28 3.71
2597 3046 6.041069 TCAGCTAGCTTAGAAATACTTCCTCC 59.959 42.308 16.46 0.00 31.28 4.30
2598 3047 5.900123 AGCTAGCTTAGAAATACTTCCTCCA 59.100 40.000 12.68 0.00 31.28 3.86
2599 3048 6.556874 AGCTAGCTTAGAAATACTTCCTCCAT 59.443 38.462 12.68 0.00 31.28 3.41
2600 3049 7.730784 AGCTAGCTTAGAAATACTTCCTCCATA 59.269 37.037 12.68 0.00 31.28 2.74
2601 3050 8.368668 GCTAGCTTAGAAATACTTCCTCCATAA 58.631 37.037 7.70 0.00 31.28 1.90
2650 3099 8.209917 ACGCTTTTATATTTCTTTACAGAGGG 57.790 34.615 0.00 0.00 0.00 4.30
2651 3100 8.044908 ACGCTTTTATATTTCTTTACAGAGGGA 58.955 33.333 0.00 0.00 0.00 4.20
2652 3101 8.552034 CGCTTTTATATTTCTTTACAGAGGGAG 58.448 37.037 0.00 0.00 0.00 4.30
2653 3102 9.397280 GCTTTTATATTTCTTTACAGAGGGAGT 57.603 33.333 0.00 0.00 0.00 3.85
2659 3108 9.892130 ATATTTCTTTACAGAGGGAGTACTTTG 57.108 33.333 0.00 0.00 0.00 2.77
2660 3109 6.989155 TTCTTTACAGAGGGAGTACTTTGA 57.011 37.500 0.00 0.00 0.00 2.69
2661 3110 7.554959 TTCTTTACAGAGGGAGTACTTTGAT 57.445 36.000 0.00 0.00 0.00 2.57
2662 3111 7.554959 TCTTTACAGAGGGAGTACTTTGATT 57.445 36.000 0.00 0.00 0.00 2.57
2663 3112 7.974504 TCTTTACAGAGGGAGTACTTTGATTT 58.025 34.615 0.00 0.00 0.00 2.17
2664 3113 8.095169 TCTTTACAGAGGGAGTACTTTGATTTC 58.905 37.037 0.00 0.00 0.00 2.17
2665 3114 5.825593 ACAGAGGGAGTACTTTGATTTCA 57.174 39.130 0.00 0.00 0.00 2.69
2666 3115 6.380079 ACAGAGGGAGTACTTTGATTTCAT 57.620 37.500 0.00 0.00 0.00 2.57
2667 3116 6.784031 ACAGAGGGAGTACTTTGATTTCATT 58.216 36.000 0.00 0.00 0.00 2.57
2668 3117 6.881602 ACAGAGGGAGTACTTTGATTTCATTC 59.118 38.462 0.00 0.00 0.00 2.67
2669 3118 6.881065 CAGAGGGAGTACTTTGATTTCATTCA 59.119 38.462 0.00 0.00 0.00 2.57
2670 3119 7.391554 CAGAGGGAGTACTTTGATTTCATTCAA 59.608 37.037 0.00 0.00 33.89 2.69
2671 3120 8.112183 AGAGGGAGTACTTTGATTTCATTCAAT 58.888 33.333 0.00 0.00 35.64 2.57
2672 3121 8.655935 AGGGAGTACTTTGATTTCATTCAATT 57.344 30.769 0.00 0.00 35.64 2.32
2673 3122 8.743714 AGGGAGTACTTTGATTTCATTCAATTC 58.256 33.333 0.00 0.00 35.64 2.17
2674 3123 7.976175 GGGAGTACTTTGATTTCATTCAATTCC 59.024 37.037 0.00 0.00 35.64 3.01
2675 3124 8.743714 GGAGTACTTTGATTTCATTCAATTCCT 58.256 33.333 0.00 0.00 35.64 3.36
2680 3129 9.525826 ACTTTGATTTCATTCAATTCCTAGACT 57.474 29.630 0.00 0.00 35.64 3.24
2681 3130 9.784680 CTTTGATTTCATTCAATTCCTAGACTG 57.215 33.333 0.00 0.00 35.64 3.51
2682 3131 8.868522 TTGATTTCATTCAATTCCTAGACTGT 57.131 30.769 0.00 0.00 30.82 3.55
2683 3132 8.868522 TGATTTCATTCAATTCCTAGACTGTT 57.131 30.769 0.00 0.00 0.00 3.16
2684 3133 8.950210 TGATTTCATTCAATTCCTAGACTGTTC 58.050 33.333 0.00 0.00 0.00 3.18
2685 3134 6.968131 TTCATTCAATTCCTAGACTGTTCG 57.032 37.500 0.00 0.00 0.00 3.95
2686 3135 6.280855 TCATTCAATTCCTAGACTGTTCGA 57.719 37.500 0.00 0.00 0.00 3.71
2687 3136 6.878317 TCATTCAATTCCTAGACTGTTCGAT 58.122 36.000 0.00 0.00 0.00 3.59
2688 3137 6.980978 TCATTCAATTCCTAGACTGTTCGATC 59.019 38.462 0.00 0.00 0.00 3.69
2689 3138 5.914898 TCAATTCCTAGACTGTTCGATCA 57.085 39.130 0.00 0.00 0.00 2.92
2690 3139 5.895928 TCAATTCCTAGACTGTTCGATCAG 58.104 41.667 19.56 19.56 40.80 2.90
2691 3140 5.652452 TCAATTCCTAGACTGTTCGATCAGA 59.348 40.000 26.24 6.81 38.63 3.27
2692 3141 6.152831 TCAATTCCTAGACTGTTCGATCAGAA 59.847 38.462 26.24 11.92 38.63 3.02
2693 3142 5.977489 TTCCTAGACTGTTCGATCAGAAA 57.023 39.130 26.24 11.95 41.10 2.52
2694 3143 5.977489 TCCTAGACTGTTCGATCAGAAAA 57.023 39.130 26.24 11.66 41.10 2.29
2695 3144 5.710984 TCCTAGACTGTTCGATCAGAAAAC 58.289 41.667 26.24 14.97 41.10 2.43
2696 3145 5.477291 TCCTAGACTGTTCGATCAGAAAACT 59.523 40.000 26.24 19.56 41.10 2.66
2697 3146 5.802956 CCTAGACTGTTCGATCAGAAAACTC 59.197 44.000 26.24 14.47 41.10 3.01
2698 3147 5.461032 AGACTGTTCGATCAGAAAACTCT 57.539 39.130 26.24 16.19 41.10 3.24
2699 3148 5.848406 AGACTGTTCGATCAGAAAACTCTT 58.152 37.500 26.24 4.83 41.10 2.85
2700 3149 5.923684 AGACTGTTCGATCAGAAAACTCTTC 59.076 40.000 26.24 12.65 41.10 2.87
2701 3150 5.601662 ACTGTTCGATCAGAAAACTCTTCA 58.398 37.500 26.24 0.00 41.10 3.02
2702 3151 5.463724 ACTGTTCGATCAGAAAACTCTTCAC 59.536 40.000 26.24 0.00 41.10 3.18
2703 3152 4.750098 TGTTCGATCAGAAAACTCTTCACC 59.250 41.667 0.00 0.00 41.10 4.02
2704 3153 4.600692 TCGATCAGAAAACTCTTCACCA 57.399 40.909 0.00 0.00 0.00 4.17
2705 3154 5.152623 TCGATCAGAAAACTCTTCACCAT 57.847 39.130 0.00 0.00 0.00 3.55
2706 3155 5.551233 TCGATCAGAAAACTCTTCACCATT 58.449 37.500 0.00 0.00 0.00 3.16
2707 3156 5.639506 TCGATCAGAAAACTCTTCACCATTC 59.360 40.000 0.00 0.00 0.00 2.67
2708 3157 5.409520 CGATCAGAAAACTCTTCACCATTCA 59.590 40.000 0.00 0.00 0.00 2.57
2709 3158 6.093219 CGATCAGAAAACTCTTCACCATTCAT 59.907 38.462 0.00 0.00 0.00 2.57
2710 3159 6.564709 TCAGAAAACTCTTCACCATTCATG 57.435 37.500 0.00 0.00 0.00 3.07
2711 3160 6.298361 TCAGAAAACTCTTCACCATTCATGA 58.702 36.000 0.00 0.00 0.00 3.07
2712 3161 6.772233 TCAGAAAACTCTTCACCATTCATGAA 59.228 34.615 11.26 11.26 34.89 2.57
2717 3166 3.146618 CTTCACCATTCATGAAGCAGC 57.853 47.619 14.54 0.00 44.77 5.25
2718 3167 1.089112 TCACCATTCATGAAGCAGCG 58.911 50.000 14.54 1.70 0.00 5.18
2719 3168 0.524816 CACCATTCATGAAGCAGCGC 60.525 55.000 14.54 0.00 0.00 5.92
2720 3169 1.065273 CCATTCATGAAGCAGCGCC 59.935 57.895 14.54 0.00 0.00 6.53
2721 3170 1.298116 CATTCATGAAGCAGCGCCG 60.298 57.895 14.54 0.00 0.00 6.46
2722 3171 3.117175 ATTCATGAAGCAGCGCCGC 62.117 57.895 14.54 7.75 0.00 6.53
2736 3185 2.181777 CCGCGCTCAGCTTCTGTA 59.818 61.111 5.56 0.00 45.59 2.74
2737 3186 1.875813 CCGCGCTCAGCTTCTGTAG 60.876 63.158 5.56 0.00 45.59 2.74
2754 3203 3.917760 GCGATGGCTAGTCCGGCT 61.918 66.667 0.00 0.00 37.80 5.52
2755 3204 2.336809 CGATGGCTAGTCCGGCTC 59.663 66.667 0.00 0.00 37.80 4.70
2756 3205 2.336809 GATGGCTAGTCCGGCTCG 59.663 66.667 0.00 0.00 37.80 5.03
2757 3206 2.442272 ATGGCTAGTCCGGCTCGT 60.442 61.111 0.00 0.00 37.80 4.18
2758 3207 2.017559 GATGGCTAGTCCGGCTCGTT 62.018 60.000 0.00 0.00 37.80 3.85
2759 3208 1.614241 ATGGCTAGTCCGGCTCGTTT 61.614 55.000 0.00 0.00 37.80 3.60
2760 3209 1.518792 GGCTAGTCCGGCTCGTTTC 60.519 63.158 0.00 0.00 0.00 2.78
2761 3210 1.511768 GCTAGTCCGGCTCGTTTCT 59.488 57.895 0.00 0.00 0.00 2.52
2762 3211 0.525882 GCTAGTCCGGCTCGTTTCTC 60.526 60.000 0.00 0.00 0.00 2.87
2763 3212 0.809385 CTAGTCCGGCTCGTTTCTCA 59.191 55.000 0.00 0.00 0.00 3.27
2764 3213 1.405821 CTAGTCCGGCTCGTTTCTCAT 59.594 52.381 0.00 0.00 0.00 2.90
2765 3214 0.608640 AGTCCGGCTCGTTTCTCATT 59.391 50.000 0.00 0.00 0.00 2.57
2766 3215 1.002087 AGTCCGGCTCGTTTCTCATTT 59.998 47.619 0.00 0.00 0.00 2.32
2767 3216 1.804748 GTCCGGCTCGTTTCTCATTTT 59.195 47.619 0.00 0.00 0.00 1.82
2768 3217 1.804151 TCCGGCTCGTTTCTCATTTTG 59.196 47.619 0.00 0.00 0.00 2.44
2769 3218 1.535462 CCGGCTCGTTTCTCATTTTGT 59.465 47.619 0.00 0.00 0.00 2.83
2770 3219 2.031157 CCGGCTCGTTTCTCATTTTGTT 60.031 45.455 0.00 0.00 0.00 2.83
2771 3220 3.550030 CCGGCTCGTTTCTCATTTTGTTT 60.550 43.478 0.00 0.00 0.00 2.83
2772 3221 4.041723 CGGCTCGTTTCTCATTTTGTTTT 58.958 39.130 0.00 0.00 0.00 2.43
2773 3222 4.502645 CGGCTCGTTTCTCATTTTGTTTTT 59.497 37.500 0.00 0.00 0.00 1.94
2774 3223 5.331532 CGGCTCGTTTCTCATTTTGTTTTTC 60.332 40.000 0.00 0.00 0.00 2.29
2775 3224 5.748630 GGCTCGTTTCTCATTTTGTTTTTCT 59.251 36.000 0.00 0.00 0.00 2.52
2776 3225 6.074835 GGCTCGTTTCTCATTTTGTTTTTCTC 60.075 38.462 0.00 0.00 0.00 2.87
2777 3226 6.344234 GCTCGTTTCTCATTTTGTTTTTCTCG 60.344 38.462 0.00 0.00 0.00 4.04
2778 3227 5.968848 TCGTTTCTCATTTTGTTTTTCTCGG 59.031 36.000 0.00 0.00 0.00 4.63
2779 3228 5.741982 CGTTTCTCATTTTGTTTTTCTCGGT 59.258 36.000 0.00 0.00 0.00 4.69
2780 3229 6.252655 CGTTTCTCATTTTGTTTTTCTCGGTT 59.747 34.615 0.00 0.00 0.00 4.44
2781 3230 7.391016 GTTTCTCATTTTGTTTTTCTCGGTTG 58.609 34.615 0.00 0.00 0.00 3.77
2782 3231 6.202516 TCTCATTTTGTTTTTCTCGGTTGT 57.797 33.333 0.00 0.00 0.00 3.32
2783 3232 6.262601 TCTCATTTTGTTTTTCTCGGTTGTC 58.737 36.000 0.00 0.00 0.00 3.18
2784 3233 6.094881 TCTCATTTTGTTTTTCTCGGTTGTCT 59.905 34.615 0.00 0.00 0.00 3.41
2785 3234 7.281324 TCTCATTTTGTTTTTCTCGGTTGTCTA 59.719 33.333 0.00 0.00 0.00 2.59
2786 3235 7.763356 TCATTTTGTTTTTCTCGGTTGTCTAA 58.237 30.769 0.00 0.00 0.00 2.10
2787 3236 8.244802 TCATTTTGTTTTTCTCGGTTGTCTAAA 58.755 29.630 0.00 0.00 0.00 1.85
2788 3237 8.531530 CATTTTGTTTTTCTCGGTTGTCTAAAG 58.468 33.333 0.00 0.00 0.00 1.85
2789 3238 5.744666 TGTTTTTCTCGGTTGTCTAAAGG 57.255 39.130 0.00 0.00 0.00 3.11
2790 3239 4.035909 TGTTTTTCTCGGTTGTCTAAAGGC 59.964 41.667 0.00 0.00 0.00 4.35
2791 3240 2.467566 TTCTCGGTTGTCTAAAGGCC 57.532 50.000 0.00 0.00 0.00 5.19
2792 3241 1.640917 TCTCGGTTGTCTAAAGGCCT 58.359 50.000 0.00 0.00 0.00 5.19
2793 3242 1.275291 TCTCGGTTGTCTAAAGGCCTG 59.725 52.381 5.69 0.00 0.00 4.85
2794 3243 1.002087 CTCGGTTGTCTAAAGGCCTGT 59.998 52.381 5.69 1.77 0.00 4.00
2795 3244 1.156736 CGGTTGTCTAAAGGCCTGTG 58.843 55.000 5.69 0.00 0.00 3.66
2796 3245 1.542547 CGGTTGTCTAAAGGCCTGTGT 60.543 52.381 5.69 0.00 0.00 3.72
2797 3246 2.152016 GGTTGTCTAAAGGCCTGTGTC 58.848 52.381 5.69 0.00 0.00 3.67
2798 3247 2.486548 GGTTGTCTAAAGGCCTGTGTCA 60.487 50.000 5.69 0.00 0.00 3.58
2799 3248 2.543777 TGTCTAAAGGCCTGTGTCAC 57.456 50.000 5.69 0.00 0.00 3.67
2800 3249 1.270094 TGTCTAAAGGCCTGTGTCACG 60.270 52.381 5.69 0.00 0.00 4.35
2801 3250 1.045407 TCTAAAGGCCTGTGTCACGT 58.955 50.000 5.69 0.00 0.00 4.49
2802 3251 1.148310 CTAAAGGCCTGTGTCACGTG 58.852 55.000 5.69 9.94 0.00 4.49
2803 3252 0.466543 TAAAGGCCTGTGTCACGTGT 59.533 50.000 16.51 0.00 0.00 4.49
2804 3253 0.393808 AAAGGCCTGTGTCACGTGTT 60.394 50.000 16.51 0.00 0.00 3.32
2805 3254 0.466543 AAGGCCTGTGTCACGTGTTA 59.533 50.000 16.51 2.72 0.00 2.41
2806 3255 0.685097 AGGCCTGTGTCACGTGTTAT 59.315 50.000 16.51 0.00 0.00 1.89
2807 3256 0.796312 GGCCTGTGTCACGTGTTATG 59.204 55.000 16.51 3.63 0.00 1.90
2808 3257 1.508632 GCCTGTGTCACGTGTTATGT 58.491 50.000 16.51 0.00 0.00 2.29
2809 3258 1.871039 GCCTGTGTCACGTGTTATGTT 59.129 47.619 16.51 0.00 0.00 2.71
2810 3259 2.289547 GCCTGTGTCACGTGTTATGTTT 59.710 45.455 16.51 0.00 0.00 2.83
2811 3260 3.242936 GCCTGTGTCACGTGTTATGTTTT 60.243 43.478 16.51 0.00 0.00 2.43
2812 3261 4.732355 GCCTGTGTCACGTGTTATGTTTTT 60.732 41.667 16.51 0.00 0.00 1.94
2839 3288 9.635404 TTGTTATCCAAACCCACTTATATTAGG 57.365 33.333 0.00 0.00 0.00 2.69
2840 3289 7.722285 TGTTATCCAAACCCACTTATATTAGGC 59.278 37.037 0.00 0.00 0.00 3.93
2841 3290 5.718801 TCCAAACCCACTTATATTAGGCA 57.281 39.130 0.00 0.00 0.00 4.75
2842 3291 6.080969 TCCAAACCCACTTATATTAGGCAA 57.919 37.500 0.00 0.00 0.00 4.52
2843 3292 6.494952 TCCAAACCCACTTATATTAGGCAAA 58.505 36.000 0.00 0.00 0.00 3.68
2844 3293 7.129425 TCCAAACCCACTTATATTAGGCAAAT 58.871 34.615 0.00 0.00 0.00 2.32
2845 3294 7.286775 TCCAAACCCACTTATATTAGGCAAATC 59.713 37.037 0.00 0.00 0.00 2.17
2846 3295 7.433680 CAAACCCACTTATATTAGGCAAATCC 58.566 38.462 0.00 0.00 0.00 3.01
2848 3297 7.642094 ACCCACTTATATTAGGCAAATCCTA 57.358 36.000 0.00 0.00 45.41 2.94
2849 3298 8.232098 ACCCACTTATATTAGGCAAATCCTAT 57.768 34.615 0.00 0.00 46.40 2.57
2850 3299 8.678798 ACCCACTTATATTAGGCAAATCCTATT 58.321 33.333 0.00 0.00 46.40 1.73
2851 3300 9.533831 CCCACTTATATTAGGCAAATCCTATTT 57.466 33.333 0.00 0.00 46.40 1.40
2856 3305 9.528489 TTATATTAGGCAAATCCTATTTGGTCC 57.472 33.333 12.82 7.43 46.40 4.46
2857 3306 3.032265 AGGCAAATCCTATTTGGTCCC 57.968 47.619 12.82 6.87 45.41 4.46
2858 3307 2.587307 AGGCAAATCCTATTTGGTCCCT 59.413 45.455 12.82 8.63 45.41 4.20
2859 3308 3.791545 AGGCAAATCCTATTTGGTCCCTA 59.208 43.478 12.82 0.00 45.41 3.53
2860 3309 4.231890 AGGCAAATCCTATTTGGTCCCTAA 59.768 41.667 12.82 0.00 45.41 2.69
2861 3310 4.959839 GGCAAATCCTATTTGGTCCCTAAA 59.040 41.667 12.82 0.00 37.07 1.85
2862 3311 5.423931 GGCAAATCCTATTTGGTCCCTAAAA 59.576 40.000 12.82 0.00 37.07 1.52
2887 3336 1.134946 GCAAATCCTATTTGGCGCTGT 59.865 47.619 7.64 0.00 35.26 4.40
2902 3351 1.217244 CTGTAGGCGCCCGTTACTT 59.783 57.895 26.15 4.77 0.00 2.24
2954 3404 1.127567 AAGCTGGGCCGGCAGATATA 61.128 55.000 37.13 6.05 38.37 0.86
2998 3451 0.741221 AGTTCTGCGATCGGCTTTCC 60.741 55.000 18.30 0.00 44.05 3.13
3069 3523 4.218852 TCCCAACCGGTTGTGAAAAATATC 59.781 41.667 37.97 0.00 38.85 1.63
3118 3584 4.783242 CAATCGTGGTTTTTCTCATTCGT 58.217 39.130 0.00 0.00 0.00 3.85
3168 3688 6.398234 TCAAAATCGATGAACCTTTTTCCA 57.602 33.333 0.00 0.00 0.00 3.53
3172 3694 7.477144 AAATCGATGAACCTTTTTCCAAAAC 57.523 32.000 0.00 0.00 0.00 2.43
3403 4012 9.710900 ACTTTTTCCAAAATAGATGAATTGTCC 57.289 29.630 0.00 0.00 0.00 4.02
3441 4071 7.888021 TGAACTTCCTTAAAATGGATGAGCTTA 59.112 33.333 0.00 0.00 34.20 3.09
3480 4112 9.681692 TGTGAACATTTCTTAACAATTGATGAG 57.318 29.630 13.59 6.81 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 1.301716 GTGCGAGGCTTCAGGAACA 60.302 57.895 0.00 0.00 0.00 3.18
55 56 0.452987 GCTTCGATGGATTTGCTGCA 59.547 50.000 0.00 0.00 0.00 4.41
159 523 4.369182 GAAAGACCACGACTTTCTTCTCA 58.631 43.478 0.00 0.00 45.32 3.27
459 834 2.112297 GGTGGTGCGAAGGAACCA 59.888 61.111 0.00 0.00 44.20 3.67
498 873 1.814394 GCATGATCTTGTTGCTGGTCA 59.186 47.619 10.05 0.00 33.61 4.02
738 1119 1.676014 CCAGAACCGAAGACCACCATC 60.676 57.143 0.00 0.00 0.00 3.51
739 1120 0.324943 CCAGAACCGAAGACCACCAT 59.675 55.000 0.00 0.00 0.00 3.55
740 1121 1.752198 CCAGAACCGAAGACCACCA 59.248 57.895 0.00 0.00 0.00 4.17
741 1122 1.671379 GCCAGAACCGAAGACCACC 60.671 63.158 0.00 0.00 0.00 4.61
742 1123 1.671379 GGCCAGAACCGAAGACCAC 60.671 63.158 0.00 0.00 0.00 4.16
743 1124 1.701031 TTGGCCAGAACCGAAGACCA 61.701 55.000 5.11 0.00 0.00 4.02
744 1125 0.536460 TTTGGCCAGAACCGAAGACC 60.536 55.000 5.11 0.00 0.00 3.85
745 1126 3.015516 TTTGGCCAGAACCGAAGAC 57.984 52.632 5.11 0.00 0.00 3.01
747 1128 0.537371 ACCTTTGGCCAGAACCGAAG 60.537 55.000 5.11 5.49 46.85 3.79
748 1129 0.536460 GACCTTTGGCCAGAACCGAA 60.536 55.000 5.11 0.00 0.00 4.30
749 1130 1.072505 GACCTTTGGCCAGAACCGA 59.927 57.895 5.11 0.00 0.00 4.69
750 1131 1.971695 GGACCTTTGGCCAGAACCG 60.972 63.158 5.11 0.00 0.00 4.44
751 1132 1.971695 CGGACCTTTGGCCAGAACC 60.972 63.158 5.11 6.01 0.00 3.62
752 1133 0.536460 TTCGGACCTTTGGCCAGAAC 60.536 55.000 5.11 0.00 0.00 3.01
753 1134 0.183971 TTTCGGACCTTTGGCCAGAA 59.816 50.000 5.11 0.63 0.00 3.02
754 1135 0.183971 TTTTCGGACCTTTGGCCAGA 59.816 50.000 5.11 0.00 0.00 3.86
755 1136 1.036707 TTTTTCGGACCTTTGGCCAG 58.963 50.000 5.11 0.00 0.00 4.85
756 1137 3.209091 TTTTTCGGACCTTTGGCCA 57.791 47.368 0.00 0.00 0.00 5.36
825 1207 1.538950 GACGAGTCGGAACCTGTTAGT 59.461 52.381 18.30 0.00 0.00 2.24
826 1208 1.811359 AGACGAGTCGGAACCTGTTAG 59.189 52.381 18.30 0.00 34.09 2.34
887 1278 1.726791 CGTTCGCATATATGTGGAGCC 59.273 52.381 22.78 5.89 38.75 4.70
953 1349 6.042638 AGAGAGAGATCCGTGATTTTTCAA 57.957 37.500 0.00 0.00 0.00 2.69
954 1350 5.655488 GAGAGAGAGATCCGTGATTTTTCA 58.345 41.667 0.00 0.00 0.00 2.69
955 1351 4.737765 CGAGAGAGAGATCCGTGATTTTTC 59.262 45.833 0.00 0.00 0.00 2.29
957 1353 3.697045 ACGAGAGAGAGATCCGTGATTTT 59.303 43.478 0.00 0.00 31.85 1.82
958 1354 3.283751 ACGAGAGAGAGATCCGTGATTT 58.716 45.455 0.00 0.00 31.85 2.17
960 1356 2.631160 ACGAGAGAGAGATCCGTGAT 57.369 50.000 0.00 0.00 31.85 3.06
961 1357 2.093394 AGAACGAGAGAGAGATCCGTGA 60.093 50.000 0.00 0.00 33.48 4.35
962 1358 2.031560 CAGAACGAGAGAGAGATCCGTG 59.968 54.545 0.00 0.00 33.48 4.94
963 1359 2.285083 CAGAACGAGAGAGAGATCCGT 58.715 52.381 0.00 0.00 34.74 4.69
964 1360 1.601903 CCAGAACGAGAGAGAGATCCG 59.398 57.143 0.00 0.00 0.00 4.18
965 1361 2.925724 TCCAGAACGAGAGAGAGATCC 58.074 52.381 0.00 0.00 0.00 3.36
983 1379 1.753073 CCATGGCTGGTTCTTGATTCC 59.247 52.381 0.00 0.00 37.79 3.01
1284 1683 2.956964 CGGAGATTGCCGTCGCTC 60.957 66.667 0.00 0.00 46.07 5.03
2025 2460 1.201998 CGAGTGAGTTCATGCATGTGC 60.202 52.381 25.43 18.37 42.50 4.57
2027 2462 2.071540 CACGAGTGAGTTCATGCATGT 58.928 47.619 25.43 7.32 0.00 3.21
2053 2495 4.749976 AGAGCTAGCTAGTGTTACTTTGC 58.250 43.478 19.38 4.48 0.00 3.68
2128 2570 0.930310 CGCCGTCTGTATGGAATGTG 59.070 55.000 0.00 0.00 33.01 3.21
2129 2571 0.179084 CCGCCGTCTGTATGGAATGT 60.179 55.000 0.00 0.00 33.01 2.71
2178 2621 1.536072 CGGATGGTGTGGTATCTCGTG 60.536 57.143 0.00 0.00 0.00 4.35
2201 2644 3.291584 CTGGCTCCTGTAGTAGTGATCA 58.708 50.000 0.00 0.00 0.00 2.92
2234 2677 2.962253 GCCTCCGTGCGATACTGC 60.962 66.667 0.00 0.00 0.00 4.40
2402 2845 4.634133 TCGTCGTCGTGGTGGCAC 62.634 66.667 9.70 9.70 38.33 5.01
2420 2863 5.048507 TCTGCTTCTTCTTCATCATCATCG 58.951 41.667 0.00 0.00 0.00 3.84
2423 2866 4.511527 GGTCTGCTTCTTCTTCATCATCA 58.488 43.478 0.00 0.00 0.00 3.07
2440 2883 1.047002 CAGCCTCTCCATAGGGTCTG 58.953 60.000 0.00 0.00 45.56 3.51
2447 2893 1.976132 GCAGGTGCAGCCTCTCCATA 61.976 60.000 13.29 0.00 46.96 2.74
2487 2933 3.304659 CCCAATTCTATGAAAATCCCGCG 60.305 47.826 0.00 0.00 0.00 6.46
2488 2934 3.005791 CCCCAATTCTATGAAAATCCCGC 59.994 47.826 0.00 0.00 0.00 6.13
2493 2939 3.909732 TCCGCCCCAATTCTATGAAAAT 58.090 40.909 0.00 0.00 0.00 1.82
2499 2945 2.104963 GTCTCTTCCGCCCCAATTCTAT 59.895 50.000 0.00 0.00 0.00 1.98
2501 2947 0.253327 GTCTCTTCCGCCCCAATTCT 59.747 55.000 0.00 0.00 0.00 2.40
2528 2977 5.209240 TGTTTGTACGTCTAGCATTTTTGC 58.791 37.500 0.00 0.00 0.00 3.68
2529 2978 7.672351 TTTGTTTGTACGTCTAGCATTTTTG 57.328 32.000 0.00 0.00 0.00 2.44
2530 2979 9.389570 GTATTTGTTTGTACGTCTAGCATTTTT 57.610 29.630 0.00 0.00 0.00 1.94
2531 2980 8.019094 GGTATTTGTTTGTACGTCTAGCATTTT 58.981 33.333 0.00 0.00 0.00 1.82
2532 2981 7.524065 GGTATTTGTTTGTACGTCTAGCATTT 58.476 34.615 0.00 0.00 0.00 2.32
2533 2982 6.183360 CGGTATTTGTTTGTACGTCTAGCATT 60.183 38.462 0.00 0.00 0.00 3.56
2534 2983 5.290158 CGGTATTTGTTTGTACGTCTAGCAT 59.710 40.000 0.00 0.00 0.00 3.79
2535 2984 4.622313 CGGTATTTGTTTGTACGTCTAGCA 59.378 41.667 0.00 0.00 0.00 3.49
2536 2985 4.032104 CCGGTATTTGTTTGTACGTCTAGC 59.968 45.833 0.00 0.00 0.00 3.42
2537 2986 5.163513 ACCGGTATTTGTTTGTACGTCTAG 58.836 41.667 4.49 0.00 0.00 2.43
2538 2987 5.132897 ACCGGTATTTGTTTGTACGTCTA 57.867 39.130 4.49 0.00 0.00 2.59
2539 2988 3.993920 ACCGGTATTTGTTTGTACGTCT 58.006 40.909 4.49 0.00 0.00 4.18
2540 2989 4.730600 AACCGGTATTTGTTTGTACGTC 57.269 40.909 8.00 0.00 0.00 4.34
2541 2990 5.272397 CAAAACCGGTATTTGTTTGTACGT 58.728 37.500 23.11 0.00 35.03 3.57
2542 2991 4.146788 GCAAAACCGGTATTTGTTTGTACG 59.853 41.667 27.64 10.07 39.42 3.67
2543 2992 5.283294 AGCAAAACCGGTATTTGTTTGTAC 58.717 37.500 27.64 15.75 39.42 2.90
2544 2993 5.517322 AGCAAAACCGGTATTTGTTTGTA 57.483 34.783 27.64 0.00 39.42 2.41
2545 2994 4.394439 AGCAAAACCGGTATTTGTTTGT 57.606 36.364 27.64 15.46 39.42 2.83
2546 2995 8.188139 AGATATAGCAAAACCGGTATTTGTTTG 58.812 33.333 27.64 24.24 39.42 2.93
2547 2996 8.288689 AGATATAGCAAAACCGGTATTTGTTT 57.711 30.769 27.64 21.91 39.42 2.83
2548 2997 7.554835 TGAGATATAGCAAAACCGGTATTTGTT 59.445 33.333 27.64 25.68 39.42 2.83
2549 2998 7.051623 TGAGATATAGCAAAACCGGTATTTGT 58.948 34.615 27.64 20.85 39.42 2.83
2550 2999 7.490962 TGAGATATAGCAAAACCGGTATTTG 57.509 36.000 25.31 25.31 40.04 2.32
2551 3000 6.204882 GCTGAGATATAGCAAAACCGGTATTT 59.795 38.462 8.00 8.26 40.81 1.40
2552 3001 5.701290 GCTGAGATATAGCAAAACCGGTATT 59.299 40.000 8.00 1.22 40.81 1.89
2553 3002 5.012148 AGCTGAGATATAGCAAAACCGGTAT 59.988 40.000 8.00 0.00 43.53 2.73
2554 3003 4.344102 AGCTGAGATATAGCAAAACCGGTA 59.656 41.667 8.00 0.00 43.53 4.02
2555 3004 3.134804 AGCTGAGATATAGCAAAACCGGT 59.865 43.478 0.00 0.00 43.53 5.28
2556 3005 3.733337 AGCTGAGATATAGCAAAACCGG 58.267 45.455 0.00 0.00 43.53 5.28
2557 3006 4.387256 GCTAGCTGAGATATAGCAAAACCG 59.613 45.833 7.70 0.00 43.53 4.44
2558 3007 5.546526 AGCTAGCTGAGATATAGCAAAACC 58.453 41.667 18.57 0.00 43.49 3.27
2559 3008 8.085296 TCTAAGCTAGCTGAGATATAGCAAAAC 58.915 37.037 25.68 0.00 43.49 2.43
2560 3009 8.183104 TCTAAGCTAGCTGAGATATAGCAAAA 57.817 34.615 25.68 1.90 43.49 2.44
2561 3010 7.767250 TCTAAGCTAGCTGAGATATAGCAAA 57.233 36.000 25.68 2.63 43.49 3.68
2562 3011 7.767250 TTCTAAGCTAGCTGAGATATAGCAA 57.233 36.000 29.02 12.24 43.49 3.91
2563 3012 7.767250 TTTCTAAGCTAGCTGAGATATAGCA 57.233 36.000 29.02 12.93 43.49 3.49
2564 3013 9.730420 GTATTTCTAAGCTAGCTGAGATATAGC 57.270 37.037 29.07 22.33 41.79 2.97
2568 3017 8.798402 GGAAGTATTTCTAAGCTAGCTGAGATA 58.202 37.037 29.02 24.68 33.79 1.98
2569 3018 7.508977 AGGAAGTATTTCTAAGCTAGCTGAGAT 59.491 37.037 29.02 19.03 33.79 2.75
2570 3019 6.836527 AGGAAGTATTTCTAAGCTAGCTGAGA 59.163 38.462 25.68 25.68 31.92 3.27
2571 3020 7.049799 AGGAAGTATTTCTAAGCTAGCTGAG 57.950 40.000 21.81 21.81 33.68 3.35
2572 3021 6.041069 GGAGGAAGTATTTCTAAGCTAGCTGA 59.959 42.308 20.16 10.42 33.68 4.26
2573 3022 6.183360 TGGAGGAAGTATTTCTAAGCTAGCTG 60.183 42.308 20.16 6.89 33.68 4.24
2574 3023 5.900123 TGGAGGAAGTATTTCTAAGCTAGCT 59.100 40.000 12.68 12.68 33.68 3.32
2575 3024 6.163135 TGGAGGAAGTATTTCTAAGCTAGC 57.837 41.667 6.62 6.62 33.68 3.42
2624 3073 8.674607 CCCTCTGTAAAGAAATATAAAAGCGTT 58.325 33.333 0.00 0.00 0.00 4.84
2625 3074 8.044908 TCCCTCTGTAAAGAAATATAAAAGCGT 58.955 33.333 0.00 0.00 0.00 5.07
2626 3075 8.433421 TCCCTCTGTAAAGAAATATAAAAGCG 57.567 34.615 0.00 0.00 0.00 4.68
2627 3076 9.397280 ACTCCCTCTGTAAAGAAATATAAAAGC 57.603 33.333 0.00 0.00 0.00 3.51
2633 3082 9.892130 CAAAGTACTCCCTCTGTAAAGAAATAT 57.108 33.333 0.00 0.00 0.00 1.28
2634 3083 9.096823 TCAAAGTACTCCCTCTGTAAAGAAATA 57.903 33.333 0.00 0.00 0.00 1.40
2635 3084 7.974504 TCAAAGTACTCCCTCTGTAAAGAAAT 58.025 34.615 0.00 0.00 0.00 2.17
2636 3085 7.369551 TCAAAGTACTCCCTCTGTAAAGAAA 57.630 36.000 0.00 0.00 0.00 2.52
2637 3086 6.989155 TCAAAGTACTCCCTCTGTAAAGAA 57.011 37.500 0.00 0.00 0.00 2.52
2638 3087 7.554959 AATCAAAGTACTCCCTCTGTAAAGA 57.445 36.000 0.00 0.00 0.00 2.52
2639 3088 7.878127 TGAAATCAAAGTACTCCCTCTGTAAAG 59.122 37.037 0.00 0.00 0.00 1.85
2640 3089 7.741785 TGAAATCAAAGTACTCCCTCTGTAAA 58.258 34.615 0.00 0.00 0.00 2.01
2641 3090 7.311092 TGAAATCAAAGTACTCCCTCTGTAA 57.689 36.000 0.00 0.00 0.00 2.41
2642 3091 6.928348 TGAAATCAAAGTACTCCCTCTGTA 57.072 37.500 0.00 0.00 0.00 2.74
2643 3092 5.825593 TGAAATCAAAGTACTCCCTCTGT 57.174 39.130 0.00 0.00 0.00 3.41
2644 3093 6.881065 TGAATGAAATCAAAGTACTCCCTCTG 59.119 38.462 0.00 0.00 0.00 3.35
2645 3094 7.020827 TGAATGAAATCAAAGTACTCCCTCT 57.979 36.000 0.00 0.00 0.00 3.69
2646 3095 7.687941 TTGAATGAAATCAAAGTACTCCCTC 57.312 36.000 0.00 0.00 36.42 4.30
2647 3096 8.655935 AATTGAATGAAATCAAAGTACTCCCT 57.344 30.769 0.00 0.00 42.22 4.20
2648 3097 7.976175 GGAATTGAATGAAATCAAAGTACTCCC 59.024 37.037 0.00 0.00 42.22 4.30
2649 3098 8.743714 AGGAATTGAATGAAATCAAAGTACTCC 58.256 33.333 0.00 0.00 42.22 3.85
2654 3103 9.525826 AGTCTAGGAATTGAATGAAATCAAAGT 57.474 29.630 0.00 0.00 42.22 2.66
2655 3104 9.784680 CAGTCTAGGAATTGAATGAAATCAAAG 57.215 33.333 0.00 0.00 42.22 2.77
2656 3105 9.300681 ACAGTCTAGGAATTGAATGAAATCAAA 57.699 29.630 0.00 0.00 42.22 2.69
2657 3106 8.868522 ACAGTCTAGGAATTGAATGAAATCAA 57.131 30.769 0.00 0.00 43.03 2.57
2658 3107 8.868522 AACAGTCTAGGAATTGAATGAAATCA 57.131 30.769 0.00 0.00 33.27 2.57
2659 3108 8.119226 CGAACAGTCTAGGAATTGAATGAAATC 58.881 37.037 0.00 0.00 33.27 2.17
2660 3109 7.824289 TCGAACAGTCTAGGAATTGAATGAAAT 59.176 33.333 0.00 0.00 33.27 2.17
2661 3110 7.158697 TCGAACAGTCTAGGAATTGAATGAAA 58.841 34.615 0.00 0.00 33.27 2.69
2662 3111 6.697395 TCGAACAGTCTAGGAATTGAATGAA 58.303 36.000 0.00 0.00 33.27 2.57
2663 3112 6.280855 TCGAACAGTCTAGGAATTGAATGA 57.719 37.500 0.00 0.00 33.27 2.57
2664 3113 6.758416 TGATCGAACAGTCTAGGAATTGAATG 59.242 38.462 0.00 0.00 34.88 2.67
2665 3114 6.878317 TGATCGAACAGTCTAGGAATTGAAT 58.122 36.000 0.00 0.00 0.00 2.57
2666 3115 6.152831 TCTGATCGAACAGTCTAGGAATTGAA 59.847 38.462 20.52 0.00 38.79 2.69
2667 3116 5.652452 TCTGATCGAACAGTCTAGGAATTGA 59.348 40.000 20.52 0.00 38.79 2.57
2668 3117 5.895928 TCTGATCGAACAGTCTAGGAATTG 58.104 41.667 20.52 0.00 38.79 2.32
2669 3118 6.531503 TTCTGATCGAACAGTCTAGGAATT 57.468 37.500 20.52 0.00 38.79 2.17
2670 3119 6.531503 TTTCTGATCGAACAGTCTAGGAAT 57.468 37.500 20.52 0.00 38.79 3.01
2671 3120 5.977489 TTTCTGATCGAACAGTCTAGGAA 57.023 39.130 20.52 5.76 38.79 3.36
2672 3121 5.477291 AGTTTTCTGATCGAACAGTCTAGGA 59.523 40.000 20.52 0.00 38.79 2.94
2673 3122 5.715070 AGTTTTCTGATCGAACAGTCTAGG 58.285 41.667 20.52 0.00 38.79 3.02
2674 3123 6.616947 AGAGTTTTCTGATCGAACAGTCTAG 58.383 40.000 20.52 0.00 39.27 2.43
2675 3124 6.576662 AGAGTTTTCTGATCGAACAGTCTA 57.423 37.500 20.52 6.69 39.27 2.59
2676 3125 5.461032 AGAGTTTTCTGATCGAACAGTCT 57.539 39.130 20.52 13.27 37.30 3.24
2677 3126 5.692204 TGAAGAGTTTTCTGATCGAACAGTC 59.308 40.000 20.52 11.38 38.79 3.51
2678 3127 5.463724 GTGAAGAGTTTTCTGATCGAACAGT 59.536 40.000 20.52 2.69 38.79 3.55
2679 3128 5.107298 GGTGAAGAGTTTTCTGATCGAACAG 60.107 44.000 16.00 16.00 39.02 3.16
2680 3129 4.750098 GGTGAAGAGTTTTCTGATCGAACA 59.250 41.667 0.00 0.00 32.79 3.18
2681 3130 4.750098 TGGTGAAGAGTTTTCTGATCGAAC 59.250 41.667 0.00 0.00 32.79 3.95
2682 3131 4.956085 TGGTGAAGAGTTTTCTGATCGAA 58.044 39.130 0.00 0.00 32.79 3.71
2683 3132 4.600692 TGGTGAAGAGTTTTCTGATCGA 57.399 40.909 0.00 0.00 32.79 3.59
2684 3133 5.409520 TGAATGGTGAAGAGTTTTCTGATCG 59.590 40.000 0.00 0.00 32.79 3.69
2685 3134 6.808008 TGAATGGTGAAGAGTTTTCTGATC 57.192 37.500 0.00 0.00 32.79 2.92
2686 3135 6.944290 TCATGAATGGTGAAGAGTTTTCTGAT 59.056 34.615 0.00 0.00 32.79 2.90
2687 3136 6.298361 TCATGAATGGTGAAGAGTTTTCTGA 58.702 36.000 0.00 0.00 32.79 3.27
2688 3137 6.564709 TCATGAATGGTGAAGAGTTTTCTG 57.435 37.500 0.00 0.00 32.79 3.02
2698 3147 1.469703 CGCTGCTTCATGAATGGTGAA 59.530 47.619 8.96 0.00 34.63 3.18
2699 3148 1.089112 CGCTGCTTCATGAATGGTGA 58.911 50.000 8.96 0.00 0.00 4.02
2700 3149 0.524816 GCGCTGCTTCATGAATGGTG 60.525 55.000 8.96 9.58 0.00 4.17
2701 3150 1.660560 GGCGCTGCTTCATGAATGGT 61.661 55.000 8.96 0.00 0.00 3.55
2702 3151 1.065273 GGCGCTGCTTCATGAATGG 59.935 57.895 8.96 0.00 0.00 3.16
2703 3152 1.298116 CGGCGCTGCTTCATGAATG 60.298 57.895 8.96 4.68 0.00 2.67
2704 3153 3.104766 CGGCGCTGCTTCATGAAT 58.895 55.556 8.96 0.00 0.00 2.57
2705 3154 3.803082 GCGGCGCTGCTTCATGAA 61.803 61.111 33.43 8.12 0.00 2.57
2719 3168 1.875813 CTACAGAAGCTGAGCGCGG 60.876 63.158 8.83 0.00 45.59 6.46
2720 3169 3.685592 CTACAGAAGCTGAGCGCG 58.314 61.111 0.00 0.00 45.59 6.86
2728 3177 1.067821 ACTAGCCATCGCTACAGAAGC 59.932 52.381 0.00 0.00 46.08 3.86
2729 3178 2.287909 GGACTAGCCATCGCTACAGAAG 60.288 54.545 0.00 0.00 46.08 2.85
2730 3179 1.681793 GGACTAGCCATCGCTACAGAA 59.318 52.381 0.00 0.00 46.08 3.02
2731 3180 1.319541 GGACTAGCCATCGCTACAGA 58.680 55.000 0.00 0.00 46.08 3.41
2732 3181 0.039978 CGGACTAGCCATCGCTACAG 60.040 60.000 0.00 0.00 46.08 2.74
2733 3182 1.452953 CCGGACTAGCCATCGCTACA 61.453 60.000 0.00 0.00 46.08 2.74
2734 3183 1.286260 CCGGACTAGCCATCGCTAC 59.714 63.158 0.00 0.00 46.08 3.58
2735 3184 2.561956 GCCGGACTAGCCATCGCTA 61.562 63.158 5.05 0.00 46.08 4.26
2737 3186 3.850095 GAGCCGGACTAGCCATCGC 62.850 68.421 5.05 0.00 35.94 4.58
2738 3187 2.336809 GAGCCGGACTAGCCATCG 59.663 66.667 5.05 0.00 35.94 3.84
2739 3188 2.017559 AACGAGCCGGACTAGCCATC 62.018 60.000 5.05 0.00 35.94 3.51
2740 3189 1.614241 AAACGAGCCGGACTAGCCAT 61.614 55.000 5.05 0.00 35.94 4.40
2741 3190 2.221906 GAAACGAGCCGGACTAGCCA 62.222 60.000 5.05 0.00 35.94 4.75
2742 3191 1.518792 GAAACGAGCCGGACTAGCC 60.519 63.158 5.05 0.00 0.00 3.93
2743 3192 0.525882 GAGAAACGAGCCGGACTAGC 60.526 60.000 5.05 0.00 0.00 3.42
2744 3193 0.809385 TGAGAAACGAGCCGGACTAG 59.191 55.000 5.05 4.92 0.00 2.57
2745 3194 1.471119 ATGAGAAACGAGCCGGACTA 58.529 50.000 5.05 0.00 0.00 2.59
2746 3195 0.608640 AATGAGAAACGAGCCGGACT 59.391 50.000 5.05 0.50 0.00 3.85
2747 3196 1.439679 AAATGAGAAACGAGCCGGAC 58.560 50.000 5.05 0.00 0.00 4.79
2748 3197 1.804151 CAAAATGAGAAACGAGCCGGA 59.196 47.619 5.05 0.00 0.00 5.14
2749 3198 1.535462 ACAAAATGAGAAACGAGCCGG 59.465 47.619 0.00 0.00 0.00 6.13
2750 3199 2.969443 ACAAAATGAGAAACGAGCCG 57.031 45.000 0.00 0.00 0.00 5.52
2751 3200 5.748630 AGAAAAACAAAATGAGAAACGAGCC 59.251 36.000 0.00 0.00 0.00 4.70
2752 3201 6.344234 CGAGAAAAACAAAATGAGAAACGAGC 60.344 38.462 0.00 0.00 0.00 5.03
2753 3202 6.140737 CCGAGAAAAACAAAATGAGAAACGAG 59.859 38.462 0.00 0.00 0.00 4.18
2754 3203 5.968848 CCGAGAAAAACAAAATGAGAAACGA 59.031 36.000 0.00 0.00 0.00 3.85
2755 3204 5.741982 ACCGAGAAAAACAAAATGAGAAACG 59.258 36.000 0.00 0.00 0.00 3.60
2756 3205 7.062956 ACAACCGAGAAAAACAAAATGAGAAAC 59.937 33.333 0.00 0.00 0.00 2.78
2757 3206 7.093992 ACAACCGAGAAAAACAAAATGAGAAA 58.906 30.769 0.00 0.00 0.00 2.52
2758 3207 6.626302 ACAACCGAGAAAAACAAAATGAGAA 58.374 32.000 0.00 0.00 0.00 2.87
2759 3208 6.094881 AGACAACCGAGAAAAACAAAATGAGA 59.905 34.615 0.00 0.00 0.00 3.27
2760 3209 6.265577 AGACAACCGAGAAAAACAAAATGAG 58.734 36.000 0.00 0.00 0.00 2.90
2761 3210 6.202516 AGACAACCGAGAAAAACAAAATGA 57.797 33.333 0.00 0.00 0.00 2.57
2762 3211 7.979115 TTAGACAACCGAGAAAAACAAAATG 57.021 32.000 0.00 0.00 0.00 2.32
2763 3212 7.704899 CCTTTAGACAACCGAGAAAAACAAAAT 59.295 33.333 0.00 0.00 0.00 1.82
2764 3213 7.030768 CCTTTAGACAACCGAGAAAAACAAAA 58.969 34.615 0.00 0.00 0.00 2.44
2765 3214 6.557110 CCTTTAGACAACCGAGAAAAACAAA 58.443 36.000 0.00 0.00 0.00 2.83
2766 3215 5.449451 GCCTTTAGACAACCGAGAAAAACAA 60.449 40.000 0.00 0.00 0.00 2.83
2767 3216 4.035909 GCCTTTAGACAACCGAGAAAAACA 59.964 41.667 0.00 0.00 0.00 2.83
2768 3217 4.534168 GCCTTTAGACAACCGAGAAAAAC 58.466 43.478 0.00 0.00 0.00 2.43
2769 3218 3.566742 GGCCTTTAGACAACCGAGAAAAA 59.433 43.478 0.00 0.00 0.00 1.94
2770 3219 3.143728 GGCCTTTAGACAACCGAGAAAA 58.856 45.455 0.00 0.00 0.00 2.29
2771 3220 2.370849 AGGCCTTTAGACAACCGAGAAA 59.629 45.455 0.00 0.00 0.00 2.52
2772 3221 1.975680 AGGCCTTTAGACAACCGAGAA 59.024 47.619 0.00 0.00 0.00 2.87
2773 3222 1.275291 CAGGCCTTTAGACAACCGAGA 59.725 52.381 0.00 0.00 0.00 4.04
2774 3223 1.002087 ACAGGCCTTTAGACAACCGAG 59.998 52.381 0.00 0.00 0.00 4.63
2775 3224 1.053424 ACAGGCCTTTAGACAACCGA 58.947 50.000 0.00 0.00 0.00 4.69
2776 3225 1.156736 CACAGGCCTTTAGACAACCG 58.843 55.000 0.00 0.00 0.00 4.44
2777 3226 2.152016 GACACAGGCCTTTAGACAACC 58.848 52.381 0.00 0.00 0.00 3.77
2778 3227 2.548480 GTGACACAGGCCTTTAGACAAC 59.452 50.000 0.00 0.00 0.00 3.32
2779 3228 2.805295 CGTGACACAGGCCTTTAGACAA 60.805 50.000 0.00 0.00 0.00 3.18
2780 3229 1.270094 CGTGACACAGGCCTTTAGACA 60.270 52.381 0.00 0.00 0.00 3.41
2781 3230 1.270147 ACGTGACACAGGCCTTTAGAC 60.270 52.381 0.00 0.00 0.00 2.59
2782 3231 1.045407 ACGTGACACAGGCCTTTAGA 58.955 50.000 0.00 0.00 0.00 2.10
2783 3232 1.148310 CACGTGACACAGGCCTTTAG 58.852 55.000 10.90 0.00 0.00 1.85
2784 3233 0.466543 ACACGTGACACAGGCCTTTA 59.533 50.000 25.01 0.00 0.00 1.85
2785 3234 0.393808 AACACGTGACACAGGCCTTT 60.394 50.000 25.01 0.00 0.00 3.11
2786 3235 0.466543 TAACACGTGACACAGGCCTT 59.533 50.000 25.01 4.96 0.00 4.35
2787 3236 0.685097 ATAACACGTGACACAGGCCT 59.315 50.000 25.01 0.00 0.00 5.19
2788 3237 0.796312 CATAACACGTGACACAGGCC 59.204 55.000 25.01 0.00 0.00 5.19
2789 3238 1.508632 ACATAACACGTGACACAGGC 58.491 50.000 25.01 0.00 0.00 4.85
2790 3239 4.545823 AAAACATAACACGTGACACAGG 57.454 40.909 25.01 7.97 0.00 4.00
2813 3262 9.635404 CCTAATATAAGTGGGTTTGGATAACAA 57.365 33.333 0.00 0.00 37.28 2.83
2814 3263 7.722285 GCCTAATATAAGTGGGTTTGGATAACA 59.278 37.037 0.00 0.00 0.00 2.41
2815 3264 7.722285 TGCCTAATATAAGTGGGTTTGGATAAC 59.278 37.037 0.00 0.00 0.00 1.89
2816 3265 7.817440 TGCCTAATATAAGTGGGTTTGGATAA 58.183 34.615 0.00 0.00 0.00 1.75
2817 3266 7.395525 TGCCTAATATAAGTGGGTTTGGATA 57.604 36.000 0.00 0.00 0.00 2.59
2818 3267 6.274322 TGCCTAATATAAGTGGGTTTGGAT 57.726 37.500 0.00 0.00 0.00 3.41
2819 3268 5.718801 TGCCTAATATAAGTGGGTTTGGA 57.281 39.130 0.00 0.00 0.00 3.53
2820 3269 6.783708 TTTGCCTAATATAAGTGGGTTTGG 57.216 37.500 0.00 0.00 0.00 3.28
2821 3270 7.433680 GGATTTGCCTAATATAAGTGGGTTTG 58.566 38.462 0.00 0.00 0.00 2.93
2822 3271 7.597288 GGATTTGCCTAATATAAGTGGGTTT 57.403 36.000 0.00 0.00 0.00 3.27
2838 3287 3.032265 AGGGACCAAATAGGATTTGCC 57.968 47.619 6.43 3.95 41.22 4.52
2839 3288 6.538945 TTTTAGGGACCAAATAGGATTTGC 57.461 37.500 6.43 0.00 41.22 3.68
2887 3336 0.894141 TACAAAGTAACGGGCGCCTA 59.106 50.000 28.56 8.31 0.00 3.93
2902 3351 1.772182 CGCCCGTTTGCAAAATACAA 58.228 45.000 14.67 0.00 0.00 2.41
2948 3398 4.814234 TGCGAGTTTGCGGAAAATATATCT 59.186 37.500 2.79 0.00 37.81 1.98
2949 3399 5.090652 TGCGAGTTTGCGGAAAATATATC 57.909 39.130 2.79 0.00 37.81 1.63
2954 3404 2.500509 TTTGCGAGTTTGCGGAAAAT 57.499 40.000 2.79 1.81 46.00 1.82
2977 3430 1.464997 GAAAGCCGATCGCAGAACTTT 59.535 47.619 10.32 12.77 43.58 2.66
2978 3431 1.079503 GAAAGCCGATCGCAGAACTT 58.920 50.000 10.32 4.79 43.58 2.66
2979 3432 0.741221 GGAAAGCCGATCGCAGAACT 60.741 55.000 10.32 0.00 43.58 3.01
3049 3503 5.127693 TGGATATTTTTCACAACCGGTTG 57.872 39.130 39.20 39.20 45.58 3.77
3051 3505 5.993748 AATGGATATTTTTCACAACCGGT 57.006 34.783 0.00 0.00 0.00 5.28
3069 3523 8.284693 CAGAAGGAAATAAAAACAGCAAAATGG 58.715 33.333 0.00 0.00 0.00 3.16
3090 3544 4.222114 GAGAAAAACCACGATTGCAGAAG 58.778 43.478 0.00 0.00 0.00 2.85
3129 3595 6.978080 TCGATTTTGAAGAAAAACCAAGGAAG 59.022 34.615 0.00 0.00 40.51 3.46
3422 4052 9.874205 TTTGAAATAAGCTCATCCATTTTAAGG 57.126 29.630 0.00 0.00 0.00 2.69
3456 4088 8.579006 AGCTCATCAATTGTTAAGAAATGTTCA 58.421 29.630 5.13 0.00 0.00 3.18
3457 4089 8.976986 AGCTCATCAATTGTTAAGAAATGTTC 57.023 30.769 5.13 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.