Multiple sequence alignment - TraesCS4D01G099400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G099400 chr4D 100.000 4302 0 0 1 4302 76612498 76608197 0.000000e+00 7945.0
1 TraesCS4D01G099400 chr4D 95.453 2793 99 7 601 3387 77025544 77028314 0.000000e+00 4429.0
2 TraesCS4D01G099400 chr4D 84.576 590 71 16 3559 4134 108396022 108395439 6.240000e-158 568.0
3 TraesCS4D01G099400 chr4D 84.138 580 78 11 3566 4134 108388321 108387745 2.260000e-152 549.0
4 TraesCS4D01G099400 chr4D 98.367 245 3 1 313 556 30506670 30506426 3.070000e-116 429.0
5 TraesCS4D01G099400 chr4D 98.347 242 4 0 316 557 11504355 11504114 3.980000e-115 425.0
6 TraesCS4D01G099400 chr4D 93.143 175 12 0 1 175 12696089 12695915 1.530000e-64 257.0
7 TraesCS4D01G099400 chr4D 94.667 150 8 0 168 317 356873785 356873934 2.590000e-57 233.0
8 TraesCS4D01G099400 chr4D 81.633 147 26 1 836 981 165303433 165303579 2.100000e-23 121.0
9 TraesCS4D01G099400 chr4B 93.319 2784 128 14 640 3386 109049724 109046962 0.000000e+00 4058.0
10 TraesCS4D01G099400 chr4A 93.555 2281 118 9 642 2915 511079059 511081317 0.000000e+00 3371.0
11 TraesCS4D01G099400 chr4A 98.077 208 4 0 2911 3118 511084570 511084777 3.160000e-96 363.0
12 TraesCS4D01G099400 chr4A 94.595 222 12 0 3112 3333 511131309 511131530 1.150000e-90 344.0
13 TraesCS4D01G099400 chr4A 83.784 185 29 1 832 1015 66421759 66421575 1.590000e-39 174.0
14 TraesCS4D01G099400 chr2D 95.504 823 29 7 3385 4204 6718659 6719476 0.000000e+00 1308.0
15 TraesCS4D01G099400 chr2D 92.197 628 39 8 3387 4008 571217802 571218425 0.000000e+00 880.0
16 TraesCS4D01G099400 chr2D 97.541 244 5 1 314 557 642827315 642827073 2.390000e-112 416.0
17 TraesCS4D01G099400 chr2D 94.079 152 8 1 166 317 130081826 130081676 3.350000e-56 230.0
18 TraesCS4D01G099400 chr2D 82.162 185 32 1 832 1015 154509153 154508969 1.600000e-34 158.0
19 TraesCS4D01G099400 chr2D 95.556 45 2 0 544 588 192752402 192752358 5.970000e-09 73.1
20 TraesCS4D01G099400 chr2D 95.238 42 2 0 534 575 445189968 445190009 2.780000e-07 67.6
21 TraesCS4D01G099400 chr5B 93.459 688 38 5 3385 4069 54318071 54317388 0.000000e+00 1014.0
22 TraesCS4D01G099400 chr5B 92.025 163 8 5 170 330 528574276 528574435 1.560000e-54 224.0
23 TraesCS4D01G099400 chr5D 91.667 624 44 7 3387 4006 444746040 444746659 0.000000e+00 857.0
24 TraesCS4D01G099400 chr5D 88.553 463 44 8 3564 4020 159493711 159493252 1.750000e-153 553.0
25 TraesCS4D01G099400 chr5D 96.047 253 7 2 305 557 241278055 241278304 4.000000e-110 409.0
26 TraesCS4D01G099400 chr5D 95.361 194 7 2 3376 3568 326744935 326744743 1.500000e-79 307.0
27 TraesCS4D01G099400 chr7D 85.424 590 65 16 3559 4134 181238281 181238863 1.030000e-165 593.0
28 TraesCS4D01G099400 chr7D 98.347 242 4 0 315 556 397205687 397205446 3.980000e-115 425.0
29 TraesCS4D01G099400 chr7D 93.714 175 11 0 1 175 136414720 136414894 3.300000e-66 263.0
30 TraesCS4D01G099400 chr6D 91.011 445 23 8 3384 3828 29773461 29773888 6.200000e-163 584.0
31 TraesCS4D01G099400 chr6D 90.972 432 35 4 3591 4020 49398858 49398429 2.880000e-161 579.0
32 TraesCS4D01G099400 chr6D 97.934 242 5 0 315 556 80054319 80054078 1.850000e-113 420.0
33 TraesCS4D01G099400 chr6D 97.934 242 5 0 316 557 227008002 227007761 1.850000e-113 420.0
34 TraesCS4D01G099400 chr6D 93.182 176 11 1 1 175 61601012 61600837 1.530000e-64 257.0
35 TraesCS4D01G099400 chr6D 92.571 175 13 0 1 175 143958642 143958468 7.140000e-63 252.0
36 TraesCS4D01G099400 chr3B 95.415 349 15 1 3385 3732 794532674 794532326 4.860000e-154 555.0
37 TraesCS4D01G099400 chr3B 93.143 175 12 0 1 175 49869811 49869985 1.530000e-64 257.0
38 TraesCS4D01G099400 chr3B 88.889 54 4 1 535 586 642070121 642070068 9.990000e-07 65.8
39 TraesCS4D01G099400 chr3D 94.904 314 14 2 266 579 511728444 511728133 1.390000e-134 490.0
40 TraesCS4D01G099400 chr3D 97.326 187 5 0 3382 3568 526481141 526481327 6.940000e-83 318.0
41 TraesCS4D01G099400 chr3D 95.833 144 6 0 174 317 612710145 612710002 2.590000e-57 233.0
42 TraesCS4D01G099400 chr3D 88.496 113 10 3 4108 4218 354787947 354788058 2.700000e-27 134.0
43 TraesCS4D01G099400 chr1D 90.852 317 26 1 1 317 93120556 93120243 5.140000e-114 422.0
44 TraesCS4D01G099400 chr1D 85.942 313 34 7 4 312 326281391 326281085 4.150000e-85 326.0
45 TraesCS4D01G099400 chr1D 95.270 148 7 0 170 317 160451661 160451514 7.190000e-58 235.0
46 TraesCS4D01G099400 chr1D 92.357 157 9 2 161 317 9764225 9764072 2.010000e-53 220.0
47 TraesCS4D01G099400 chr1D 83.264 239 36 4 1 237 77665781 77665545 2.610000e-52 217.0
48 TraesCS4D01G099400 chr1D 85.405 185 26 1 832 1015 14566357 14566173 1.580000e-44 191.0
49 TraesCS4D01G099400 chr1D 85.405 185 26 1 832 1015 14633891 14634075 1.580000e-44 191.0
50 TraesCS4D01G099400 chr1D 84.324 185 28 1 832 1015 14650637 14650453 3.420000e-41 180.0
51 TraesCS4D01G099400 chr1D 81.818 187 31 3 832 1015 412547571 412547385 2.070000e-33 154.0
52 TraesCS4D01G099400 chr2A 85.222 406 53 5 174 576 486472320 486472721 1.110000e-110 411.0
53 TraesCS4D01G099400 chr2A 100.000 34 0 0 543 576 383945544 383945577 3.590000e-06 63.9
54 TraesCS4D01G099400 chr2A 90.476 42 2 1 548 589 558531104 558531143 2.000000e-03 54.7
55 TraesCS4D01G099400 chr1B 94.222 225 12 1 3385 3608 58424336 58424560 4.120000e-90 342.0
56 TraesCS4D01G099400 chr1B 94.079 152 9 0 174 325 335974856 335975007 9.300000e-57 231.0
57 TraesCS4D01G099400 chr1B 91.489 47 3 1 536 582 392437899 392437854 3.590000e-06 63.9
58 TraesCS4D01G099400 chr7B 93.143 175 12 0 1 175 104298529 104298355 1.530000e-64 257.0
59 TraesCS4D01G099400 chr6A 82.162 185 32 1 832 1015 409120131 409120315 1.600000e-34 158.0
60 TraesCS4D01G099400 chr6A 80.541 185 35 1 832 1015 546620164 546619980 1.610000e-29 141.0
61 TraesCS4D01G099400 chrUn 81.768 181 32 1 836 1015 316628671 316628851 2.680000e-32 150.0
62 TraesCS4D01G099400 chr1A 91.111 45 4 0 536 580 335034096 335034140 1.290000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G099400 chr4D 76608197 76612498 4301 True 7945 7945 100.000 1 4302 1 chr4D.!!$R4 4301
1 TraesCS4D01G099400 chr4D 77025544 77028314 2770 False 4429 4429 95.453 601 3387 1 chr4D.!!$F1 2786
2 TraesCS4D01G099400 chr4D 108395439 108396022 583 True 568 568 84.576 3559 4134 1 chr4D.!!$R6 575
3 TraesCS4D01G099400 chr4D 108387745 108388321 576 True 549 549 84.138 3566 4134 1 chr4D.!!$R5 568
4 TraesCS4D01G099400 chr4B 109046962 109049724 2762 True 4058 4058 93.319 640 3386 1 chr4B.!!$R1 2746
5 TraesCS4D01G099400 chr4A 511079059 511084777 5718 False 1867 3371 95.816 642 3118 2 chr4A.!!$F2 2476
6 TraesCS4D01G099400 chr2D 6718659 6719476 817 False 1308 1308 95.504 3385 4204 1 chr2D.!!$F1 819
7 TraesCS4D01G099400 chr2D 571217802 571218425 623 False 880 880 92.197 3387 4008 1 chr2D.!!$F3 621
8 TraesCS4D01G099400 chr5B 54317388 54318071 683 True 1014 1014 93.459 3385 4069 1 chr5B.!!$R1 684
9 TraesCS4D01G099400 chr5D 444746040 444746659 619 False 857 857 91.667 3387 4006 1 chr5D.!!$F2 619
10 TraesCS4D01G099400 chr7D 181238281 181238863 582 False 593 593 85.424 3559 4134 1 chr7D.!!$F2 575

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
356 357 0.032017 AGTGCTTCCTCTATCCCCGT 60.032 55.0 0.0 0.0 0.00 5.28 F
362 363 0.032515 TCCTCTATCCCCGTGCTTCA 60.033 55.0 0.0 0.0 0.00 3.02 F
372 373 0.041312 CCGTGCTTCAACTTTGACCG 60.041 55.0 0.0 0.0 36.83 4.79 F
670 677 0.108424 CTTCCTCCCTTGCTCACTCG 60.108 60.0 0.0 0.0 0.00 4.18 F
728 735 0.392998 ATTTACGCAGCCCAGTCCAG 60.393 55.0 0.0 0.0 0.00 3.86 F
1794 1815 0.466543 AAGCTGGTGGTTCGTGTGTA 59.533 50.0 0.0 0.0 0.00 2.90 F
2895 2944 0.407528 TAGGCCCCAATTGCACTTCA 59.592 50.0 0.0 0.0 0.00 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1816 1837 0.819582 CTGCCATCACCATTGGAACC 59.180 55.000 10.37 0.0 36.26 3.62 R
1832 1853 1.198637 GAAGCACACAATCTCCACTGC 59.801 52.381 0.00 0.0 0.00 4.40 R
1856 1877 4.022849 AGCTTTTAGCATCTGACAAACCAC 60.023 41.667 1.09 0.0 45.56 4.16 R
2663 2709 1.289160 CTTCCTTCAGTCCCCATCCA 58.711 55.000 0.00 0.0 0.00 3.41 R
2715 2764 6.254281 TGATTTCAAGTACCTTAAGCTTGC 57.746 37.500 9.86 0.8 39.36 4.01 R
3288 6594 0.321671 ACCATGTCACTCAAGACCCG 59.678 55.000 0.00 0.0 37.73 5.28 R
4223 7544 1.153823 CGTACTACCGCTGCTTGCT 60.154 57.895 0.00 0.0 40.11 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.443044 TTCCCGACTGTCTACCACA 57.557 52.632 6.21 0.00 0.00 4.17
19 20 1.707106 TTCCCGACTGTCTACCACAA 58.293 50.000 6.21 0.00 33.31 3.33
20 21 1.933021 TCCCGACTGTCTACCACAAT 58.067 50.000 6.21 0.00 33.31 2.71
21 22 3.090210 TCCCGACTGTCTACCACAATA 57.910 47.619 6.21 0.00 33.31 1.90
22 23 3.433343 TCCCGACTGTCTACCACAATAA 58.567 45.455 6.21 0.00 33.31 1.40
23 24 3.446161 TCCCGACTGTCTACCACAATAAG 59.554 47.826 6.21 0.00 33.31 1.73
24 25 3.194968 CCCGACTGTCTACCACAATAAGT 59.805 47.826 6.21 0.00 33.31 2.24
25 26 4.322499 CCCGACTGTCTACCACAATAAGTT 60.322 45.833 6.21 0.00 33.31 2.66
26 27 5.235516 CCGACTGTCTACCACAATAAGTTT 58.764 41.667 6.21 0.00 33.31 2.66
27 28 5.699458 CCGACTGTCTACCACAATAAGTTTT 59.301 40.000 6.21 0.00 33.31 2.43
28 29 6.347402 CCGACTGTCTACCACAATAAGTTTTG 60.347 42.308 6.21 0.00 33.31 2.44
29 30 6.313744 ACTGTCTACCACAATAAGTTTTGC 57.686 37.500 0.00 0.00 33.31 3.68
30 31 5.240844 ACTGTCTACCACAATAAGTTTTGCC 59.759 40.000 0.00 0.00 33.31 4.52
31 32 4.521256 TGTCTACCACAATAAGTTTTGCCC 59.479 41.667 0.00 0.00 29.30 5.36
32 33 3.754323 TCTACCACAATAAGTTTTGCCCG 59.246 43.478 0.00 0.00 0.00 6.13
33 34 2.588620 ACCACAATAAGTTTTGCCCGA 58.411 42.857 0.00 0.00 0.00 5.14
34 35 2.295070 ACCACAATAAGTTTTGCCCGAC 59.705 45.455 0.00 0.00 0.00 4.79
35 36 2.556622 CCACAATAAGTTTTGCCCGACT 59.443 45.455 0.00 0.00 0.00 4.18
36 37 3.365969 CCACAATAAGTTTTGCCCGACTC 60.366 47.826 0.00 0.00 0.00 3.36
37 38 2.817844 ACAATAAGTTTTGCCCGACTCC 59.182 45.455 0.00 0.00 0.00 3.85
38 39 1.734163 ATAAGTTTTGCCCGACTCCG 58.266 50.000 0.00 0.00 0.00 4.63
57 58 3.917760 CGAGGGAGGGGCGATGAC 61.918 72.222 0.00 0.00 0.00 3.06
58 59 3.917760 GAGGGAGGGGCGATGACG 61.918 72.222 0.00 0.00 42.93 4.35
77 78 3.099438 CAGCATGCCTTCTGCTCG 58.901 61.111 15.66 0.00 46.79 5.03
78 79 2.823147 AGCATGCCTTCTGCTCGC 60.823 61.111 15.66 0.00 46.79 5.03
79 80 2.823147 GCATGCCTTCTGCTCGCT 60.823 61.111 6.36 0.00 42.00 4.93
80 81 2.404995 GCATGCCTTCTGCTCGCTT 61.405 57.895 6.36 0.00 42.00 4.68
81 82 1.091771 GCATGCCTTCTGCTCGCTTA 61.092 55.000 6.36 0.00 42.00 3.09
82 83 1.372582 CATGCCTTCTGCTCGCTTAA 58.627 50.000 0.00 0.00 42.00 1.85
83 84 1.329906 CATGCCTTCTGCTCGCTTAAG 59.670 52.381 0.00 0.00 42.00 1.85
84 85 0.321671 TGCCTTCTGCTCGCTTAAGT 59.678 50.000 4.02 0.00 42.00 2.24
85 86 0.723981 GCCTTCTGCTCGCTTAAGTG 59.276 55.000 9.86 9.86 36.87 3.16
86 87 0.723981 CCTTCTGCTCGCTTAAGTGC 59.276 55.000 11.29 10.12 0.00 4.40
87 88 1.674221 CCTTCTGCTCGCTTAAGTGCT 60.674 52.381 11.29 0.00 0.00 4.40
88 89 2.072298 CTTCTGCTCGCTTAAGTGCTT 58.928 47.619 11.29 0.00 0.00 3.91
89 90 1.432514 TCTGCTCGCTTAAGTGCTTG 58.567 50.000 11.29 5.35 0.00 4.01
90 91 1.151668 CTGCTCGCTTAAGTGCTTGT 58.848 50.000 11.29 0.00 0.00 3.16
91 92 2.029380 TCTGCTCGCTTAAGTGCTTGTA 60.029 45.455 11.29 3.28 0.00 2.41
92 93 2.337583 TGCTCGCTTAAGTGCTTGTAG 58.662 47.619 11.29 4.42 0.00 2.74
93 94 2.288825 TGCTCGCTTAAGTGCTTGTAGT 60.289 45.455 11.29 0.00 0.00 2.73
94 95 2.345942 GCTCGCTTAAGTGCTTGTAGTC 59.654 50.000 11.29 0.00 0.00 2.59
95 96 2.592194 TCGCTTAAGTGCTTGTAGTCG 58.408 47.619 11.29 0.00 0.00 4.18
96 97 2.030540 TCGCTTAAGTGCTTGTAGTCGT 60.031 45.455 11.29 0.00 0.00 4.34
97 98 2.341760 CGCTTAAGTGCTTGTAGTCGTC 59.658 50.000 2.51 0.00 0.00 4.20
98 99 2.341760 GCTTAAGTGCTTGTAGTCGTCG 59.658 50.000 4.02 0.00 0.00 5.12
99 100 1.973138 TAAGTGCTTGTAGTCGTCGC 58.027 50.000 0.00 0.00 0.00 5.19
100 101 0.314302 AAGTGCTTGTAGTCGTCGCT 59.686 50.000 0.00 0.00 0.00 4.93
101 102 1.162698 AGTGCTTGTAGTCGTCGCTA 58.837 50.000 0.00 0.00 0.00 4.26
102 103 1.130749 AGTGCTTGTAGTCGTCGCTAG 59.869 52.381 0.00 0.00 0.00 3.42
103 104 0.450583 TGCTTGTAGTCGTCGCTAGG 59.549 55.000 0.00 0.00 0.00 3.02
104 105 0.450983 GCTTGTAGTCGTCGCTAGGT 59.549 55.000 0.00 0.00 0.00 3.08
105 106 1.794437 GCTTGTAGTCGTCGCTAGGTG 60.794 57.143 0.00 0.00 0.00 4.00
106 107 0.806868 TTGTAGTCGTCGCTAGGTGG 59.193 55.000 0.00 0.00 0.00 4.61
107 108 0.321919 TGTAGTCGTCGCTAGGTGGT 60.322 55.000 0.00 0.00 0.00 4.16
108 109 0.376502 GTAGTCGTCGCTAGGTGGTC 59.623 60.000 0.00 0.00 0.00 4.02
109 110 0.251354 TAGTCGTCGCTAGGTGGTCT 59.749 55.000 0.00 0.00 0.00 3.85
110 111 0.251354 AGTCGTCGCTAGGTGGTCTA 59.749 55.000 0.00 0.00 0.00 2.59
111 112 0.376502 GTCGTCGCTAGGTGGTCTAC 59.623 60.000 0.00 0.00 0.00 2.59
112 113 1.086067 TCGTCGCTAGGTGGTCTACG 61.086 60.000 0.00 0.00 0.00 3.51
113 114 1.726265 GTCGCTAGGTGGTCTACGG 59.274 63.158 0.00 0.00 0.00 4.02
114 115 0.745845 GTCGCTAGGTGGTCTACGGA 60.746 60.000 0.00 0.00 0.00 4.69
115 116 0.745845 TCGCTAGGTGGTCTACGGAC 60.746 60.000 0.00 0.00 41.43 4.79
127 128 4.667519 GTCTACGGACCTGGATGTAATT 57.332 45.455 0.00 0.00 36.53 1.40
128 129 5.019785 GTCTACGGACCTGGATGTAATTT 57.980 43.478 0.00 0.00 36.53 1.82
129 130 5.425630 GTCTACGGACCTGGATGTAATTTT 58.574 41.667 0.00 0.00 36.53 1.82
130 131 5.878669 GTCTACGGACCTGGATGTAATTTTT 59.121 40.000 0.00 0.00 36.53 1.94
131 132 7.043565 GTCTACGGACCTGGATGTAATTTTTA 58.956 38.462 0.00 0.00 36.53 1.52
132 133 7.713942 GTCTACGGACCTGGATGTAATTTTTAT 59.286 37.037 0.00 0.00 36.53 1.40
133 134 8.269317 TCTACGGACCTGGATGTAATTTTTATT 58.731 33.333 0.00 0.00 0.00 1.40
134 135 9.550406 CTACGGACCTGGATGTAATTTTTATTA 57.450 33.333 0.00 0.00 0.00 0.98
135 136 8.990163 ACGGACCTGGATGTAATTTTTATTAT 57.010 30.769 0.00 0.00 0.00 1.28
136 137 9.416284 ACGGACCTGGATGTAATTTTTATTATT 57.584 29.630 0.00 0.00 0.00 1.40
157 158 5.554822 TTTCTGGTATTCGTTGTATTGCC 57.445 39.130 0.00 0.00 0.00 4.52
158 159 4.209307 TCTGGTATTCGTTGTATTGCCA 57.791 40.909 0.00 0.00 0.00 4.92
159 160 4.776349 TCTGGTATTCGTTGTATTGCCAT 58.224 39.130 0.00 0.00 0.00 4.40
160 161 4.574421 TCTGGTATTCGTTGTATTGCCATG 59.426 41.667 0.00 0.00 0.00 3.66
161 162 4.518249 TGGTATTCGTTGTATTGCCATGA 58.482 39.130 0.00 0.00 0.00 3.07
162 163 5.129634 TGGTATTCGTTGTATTGCCATGAT 58.870 37.500 0.00 0.00 0.00 2.45
163 164 5.592282 TGGTATTCGTTGTATTGCCATGATT 59.408 36.000 0.00 0.00 0.00 2.57
164 165 5.914635 GGTATTCGTTGTATTGCCATGATTG 59.085 40.000 0.00 0.00 0.00 2.67
165 166 5.833406 ATTCGTTGTATTGCCATGATTGA 57.167 34.783 0.00 0.00 0.00 2.57
166 167 5.635417 TTCGTTGTATTGCCATGATTGAA 57.365 34.783 0.00 0.00 0.00 2.69
167 168 5.233957 TCGTTGTATTGCCATGATTGAAG 57.766 39.130 0.00 0.00 0.00 3.02
168 169 4.940654 TCGTTGTATTGCCATGATTGAAGA 59.059 37.500 0.00 0.00 0.00 2.87
169 170 5.589855 TCGTTGTATTGCCATGATTGAAGAT 59.410 36.000 0.00 0.00 0.00 2.40
170 171 5.684184 CGTTGTATTGCCATGATTGAAGATG 59.316 40.000 0.00 0.00 0.00 2.90
171 172 6.458615 CGTTGTATTGCCATGATTGAAGATGA 60.459 38.462 0.00 0.00 0.00 2.92
172 173 7.259882 GTTGTATTGCCATGATTGAAGATGAA 58.740 34.615 0.00 0.00 0.00 2.57
173 174 7.591421 TGTATTGCCATGATTGAAGATGAAT 57.409 32.000 0.00 0.00 0.00 2.57
174 175 8.694581 TGTATTGCCATGATTGAAGATGAATA 57.305 30.769 0.00 0.00 0.00 1.75
175 176 8.570488 TGTATTGCCATGATTGAAGATGAATAC 58.430 33.333 0.00 0.00 0.00 1.89
176 177 7.834881 ATTGCCATGATTGAAGATGAATACT 57.165 32.000 0.00 0.00 0.00 2.12
177 178 6.872628 TGCCATGATTGAAGATGAATACTC 57.127 37.500 0.00 0.00 0.00 2.59
178 179 5.766670 TGCCATGATTGAAGATGAATACTCC 59.233 40.000 0.00 0.00 0.00 3.85
179 180 5.182760 GCCATGATTGAAGATGAATACTCCC 59.817 44.000 0.00 0.00 0.00 4.30
180 181 6.540995 CCATGATTGAAGATGAATACTCCCT 58.459 40.000 0.00 0.00 0.00 4.20
181 182 6.654161 CCATGATTGAAGATGAATACTCCCTC 59.346 42.308 0.00 0.00 0.00 4.30
182 183 6.179906 TGATTGAAGATGAATACTCCCTCC 57.820 41.667 0.00 0.00 0.00 4.30
183 184 4.672587 TTGAAGATGAATACTCCCTCCG 57.327 45.455 0.00 0.00 0.00 4.63
184 185 3.643237 TGAAGATGAATACTCCCTCCGT 58.357 45.455 0.00 0.00 0.00 4.69
185 186 4.030913 TGAAGATGAATACTCCCTCCGTT 58.969 43.478 0.00 0.00 0.00 4.44
186 187 4.099573 TGAAGATGAATACTCCCTCCGTTC 59.900 45.833 0.00 0.00 0.00 3.95
187 188 2.966516 AGATGAATACTCCCTCCGTTCC 59.033 50.000 0.00 0.00 0.00 3.62
188 189 2.544844 TGAATACTCCCTCCGTTCCT 57.455 50.000 0.00 0.00 0.00 3.36
189 190 3.675348 TGAATACTCCCTCCGTTCCTA 57.325 47.619 0.00 0.00 0.00 2.94
190 191 3.985127 TGAATACTCCCTCCGTTCCTAA 58.015 45.455 0.00 0.00 0.00 2.69
191 192 4.355549 TGAATACTCCCTCCGTTCCTAAA 58.644 43.478 0.00 0.00 0.00 1.85
192 193 4.966805 TGAATACTCCCTCCGTTCCTAAAT 59.033 41.667 0.00 0.00 0.00 1.40
193 194 6.138263 TGAATACTCCCTCCGTTCCTAAATA 58.862 40.000 0.00 0.00 0.00 1.40
194 195 6.785963 TGAATACTCCCTCCGTTCCTAAATAT 59.214 38.462 0.00 0.00 0.00 1.28
195 196 7.951806 TGAATACTCCCTCCGTTCCTAAATATA 59.048 37.037 0.00 0.00 0.00 0.86
196 197 8.731591 AATACTCCCTCCGTTCCTAAATATAA 57.268 34.615 0.00 0.00 0.00 0.98
197 198 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
198 199 5.011840 ACTCCCTCCGTTCCTAAATATAAGC 59.988 44.000 0.00 0.00 0.00 3.09
199 200 4.285260 TCCCTCCGTTCCTAAATATAAGCC 59.715 45.833 0.00 0.00 0.00 4.35
200 201 4.286291 CCCTCCGTTCCTAAATATAAGCCT 59.714 45.833 0.00 0.00 0.00 4.58
201 202 5.221864 CCCTCCGTTCCTAAATATAAGCCTT 60.222 44.000 0.00 0.00 0.00 4.35
202 203 6.296803 CCTCCGTTCCTAAATATAAGCCTTT 58.703 40.000 0.00 0.00 0.00 3.11
203 204 6.204882 CCTCCGTTCCTAAATATAAGCCTTTG 59.795 42.308 0.00 0.00 0.00 2.77
204 205 6.655930 TCCGTTCCTAAATATAAGCCTTTGT 58.344 36.000 0.00 0.00 0.00 2.83
205 206 7.794041 TCCGTTCCTAAATATAAGCCTTTGTA 58.206 34.615 0.00 0.00 0.00 2.41
206 207 7.929785 TCCGTTCCTAAATATAAGCCTTTGTAG 59.070 37.037 0.00 0.00 0.00 2.74
207 208 7.929785 CCGTTCCTAAATATAAGCCTTTGTAGA 59.070 37.037 0.00 0.00 0.00 2.59
208 209 8.979574 CGTTCCTAAATATAAGCCTTTGTAGAG 58.020 37.037 0.00 0.00 0.00 2.43
221 222 9.959721 AAGCCTTTGTAGAGATTTTACTATGAA 57.040 29.630 0.00 0.00 0.00 2.57
222 223 9.384764 AGCCTTTGTAGAGATTTTACTATGAAC 57.615 33.333 0.00 0.00 0.00 3.18
223 224 8.613482 GCCTTTGTAGAGATTTTACTATGAACC 58.387 37.037 0.00 0.00 0.00 3.62
224 225 9.667107 CCTTTGTAGAGATTTTACTATGAACCA 57.333 33.333 0.00 0.00 0.00 3.67
230 231 8.873215 AGAGATTTTACTATGAACCACATACG 57.127 34.615 0.00 0.00 40.07 3.06
231 232 7.926555 AGAGATTTTACTATGAACCACATACGG 59.073 37.037 0.00 0.00 40.07 4.02
232 233 7.788026 AGATTTTACTATGAACCACATACGGA 58.212 34.615 0.00 0.00 40.07 4.69
233 234 8.429641 AGATTTTACTATGAACCACATACGGAT 58.570 33.333 0.00 0.00 40.07 4.18
234 235 7.780008 TTTTACTATGAACCACATACGGATG 57.220 36.000 5.94 5.94 40.07 3.51
236 237 7.585579 TTACTATGAACCACATACGGATGTA 57.414 36.000 14.23 0.00 44.82 2.29
237 238 6.665992 ACTATGAACCACATACGGATGTAT 57.334 37.500 14.23 5.54 44.82 2.29
238 239 7.770366 ACTATGAACCACATACGGATGTATA 57.230 36.000 14.23 6.48 44.82 1.47
239 240 8.362464 ACTATGAACCACATACGGATGTATAT 57.638 34.615 14.23 1.68 44.82 0.86
240 241 9.470399 ACTATGAACCACATACGGATGTATATA 57.530 33.333 14.23 7.10 44.82 0.86
241 242 9.952188 CTATGAACCACATACGGATGTATATAG 57.048 37.037 14.23 12.28 44.82 1.31
242 243 8.589701 ATGAACCACATACGGATGTATATAGA 57.410 34.615 14.23 0.00 44.82 1.98
243 244 8.589701 TGAACCACATACGGATGTATATAGAT 57.410 34.615 14.23 0.00 44.82 1.98
244 245 8.466798 TGAACCACATACGGATGTATATAGATG 58.533 37.037 14.23 0.00 44.82 2.90
245 246 6.806751 ACCACATACGGATGTATATAGATGC 58.193 40.000 14.23 0.00 44.82 3.91
246 247 6.379988 ACCACATACGGATGTATATAGATGCA 59.620 38.462 14.23 0.00 44.82 3.96
247 248 7.069950 ACCACATACGGATGTATATAGATGCAT 59.930 37.037 14.23 0.00 44.82 3.96
248 249 7.928167 CCACATACGGATGTATATAGATGCATT 59.072 37.037 14.23 1.23 44.82 3.56
249 250 9.317936 CACATACGGATGTATATAGATGCATTT 57.682 33.333 14.23 0.00 44.82 2.32
254 255 9.944376 ACGGATGTATATAGATGCATTTAAAGT 57.056 29.630 11.19 0.00 38.38 2.66
276 277 9.860898 AAAGTGTAGATTTATTCATTTTGCTCC 57.139 29.630 0.00 0.00 0.00 4.70
277 278 7.697691 AGTGTAGATTTATTCATTTTGCTCCG 58.302 34.615 0.00 0.00 0.00 4.63
278 279 7.336931 AGTGTAGATTTATTCATTTTGCTCCGT 59.663 33.333 0.00 0.00 0.00 4.69
279 280 8.609176 GTGTAGATTTATTCATTTTGCTCCGTA 58.391 33.333 0.00 0.00 0.00 4.02
280 281 9.337396 TGTAGATTTATTCATTTTGCTCCGTAT 57.663 29.630 0.00 0.00 0.00 3.06
281 282 9.599322 GTAGATTTATTCATTTTGCTCCGTATG 57.401 33.333 0.00 0.00 0.00 2.39
282 283 8.225603 AGATTTATTCATTTTGCTCCGTATGT 57.774 30.769 0.00 0.00 0.00 2.29
283 284 9.337396 AGATTTATTCATTTTGCTCCGTATGTA 57.663 29.630 0.00 0.00 0.00 2.29
284 285 9.599322 GATTTATTCATTTTGCTCCGTATGTAG 57.401 33.333 0.00 0.00 0.00 2.74
285 286 8.500753 TTTATTCATTTTGCTCCGTATGTAGT 57.499 30.769 0.00 0.00 0.00 2.73
286 287 6.604735 ATTCATTTTGCTCCGTATGTAGTC 57.395 37.500 0.00 0.00 0.00 2.59
287 288 4.439057 TCATTTTGCTCCGTATGTAGTCC 58.561 43.478 0.00 0.00 0.00 3.85
288 289 3.965379 TTTTGCTCCGTATGTAGTCCA 57.035 42.857 0.00 0.00 0.00 4.02
289 290 2.953466 TTGCTCCGTATGTAGTCCAC 57.047 50.000 0.00 0.00 0.00 4.02
290 291 2.139323 TGCTCCGTATGTAGTCCACT 57.861 50.000 0.00 0.00 0.00 4.00
291 292 2.453521 TGCTCCGTATGTAGTCCACTT 58.546 47.619 0.00 0.00 0.00 3.16
292 293 3.623703 TGCTCCGTATGTAGTCCACTTA 58.376 45.455 0.00 0.00 0.00 2.24
293 294 3.630769 TGCTCCGTATGTAGTCCACTTAG 59.369 47.826 0.00 0.00 0.00 2.18
294 295 3.631227 GCTCCGTATGTAGTCCACTTAGT 59.369 47.826 0.00 0.00 0.00 2.24
295 296 4.818546 GCTCCGTATGTAGTCCACTTAGTA 59.181 45.833 0.00 0.00 0.00 1.82
296 297 5.049543 GCTCCGTATGTAGTCCACTTAGTAG 60.050 48.000 0.00 0.00 0.00 2.57
297 298 6.239217 TCCGTATGTAGTCCACTTAGTAGA 57.761 41.667 0.00 0.00 0.00 2.59
298 299 6.653020 TCCGTATGTAGTCCACTTAGTAGAA 58.347 40.000 0.00 0.00 0.00 2.10
299 300 7.285566 TCCGTATGTAGTCCACTTAGTAGAAT 58.714 38.462 0.00 0.00 0.00 2.40
300 301 7.443575 TCCGTATGTAGTCCACTTAGTAGAATC 59.556 40.741 0.00 0.00 0.00 2.52
301 302 7.444792 CCGTATGTAGTCCACTTAGTAGAATCT 59.555 40.741 0.00 0.00 0.00 2.40
302 303 8.497554 CGTATGTAGTCCACTTAGTAGAATCTC 58.502 40.741 0.00 0.00 0.00 2.75
303 304 9.563748 GTATGTAGTCCACTTAGTAGAATCTCT 57.436 37.037 0.00 0.00 0.00 3.10
321 322 9.138596 AGAATCTCTACAAAGACTTATACTCCC 57.861 37.037 0.00 0.00 0.00 4.30
322 323 9.138596 GAATCTCTACAAAGACTTATACTCCCT 57.861 37.037 0.00 0.00 0.00 4.20
323 324 8.700439 ATCTCTACAAAGACTTATACTCCCTC 57.300 38.462 0.00 0.00 0.00 4.30
324 325 7.061688 TCTCTACAAAGACTTATACTCCCTCC 58.938 42.308 0.00 0.00 0.00 4.30
325 326 6.738635 TCTACAAAGACTTATACTCCCTCCA 58.261 40.000 0.00 0.00 0.00 3.86
326 327 7.363031 TCTACAAAGACTTATACTCCCTCCAT 58.637 38.462 0.00 0.00 0.00 3.41
327 328 6.893020 ACAAAGACTTATACTCCCTCCATT 57.107 37.500 0.00 0.00 0.00 3.16
328 329 6.890293 ACAAAGACTTATACTCCCTCCATTC 58.110 40.000 0.00 0.00 0.00 2.67
329 330 6.126739 ACAAAGACTTATACTCCCTCCATTCC 60.127 42.308 0.00 0.00 0.00 3.01
330 331 5.157770 AGACTTATACTCCCTCCATTCCA 57.842 43.478 0.00 0.00 0.00 3.53
331 332 4.902448 AGACTTATACTCCCTCCATTCCAC 59.098 45.833 0.00 0.00 0.00 4.02
332 333 4.631234 ACTTATACTCCCTCCATTCCACA 58.369 43.478 0.00 0.00 0.00 4.17
333 334 5.036916 ACTTATACTCCCTCCATTCCACAA 58.963 41.667 0.00 0.00 0.00 3.33
334 335 5.672194 ACTTATACTCCCTCCATTCCACAAT 59.328 40.000 0.00 0.00 0.00 2.71
335 336 2.814805 ACTCCCTCCATTCCACAATG 57.185 50.000 0.00 0.00 39.45 2.82
336 337 1.995542 ACTCCCTCCATTCCACAATGT 59.004 47.619 0.00 0.00 38.22 2.71
337 338 3.189606 ACTCCCTCCATTCCACAATGTA 58.810 45.455 0.00 0.00 38.22 2.29
338 339 3.200825 ACTCCCTCCATTCCACAATGTAG 59.799 47.826 0.00 0.00 38.22 2.74
339 340 3.189606 TCCCTCCATTCCACAATGTAGT 58.810 45.455 0.00 0.00 38.22 2.73
340 341 3.054434 TCCCTCCATTCCACAATGTAGTG 60.054 47.826 0.00 0.00 38.22 2.74
341 342 2.684881 CCTCCATTCCACAATGTAGTGC 59.315 50.000 0.00 0.00 38.22 4.40
342 343 3.614092 CTCCATTCCACAATGTAGTGCT 58.386 45.455 0.00 0.00 38.22 4.40
343 344 4.012374 CTCCATTCCACAATGTAGTGCTT 58.988 43.478 0.00 0.00 38.22 3.91
344 345 4.009675 TCCATTCCACAATGTAGTGCTTC 58.990 43.478 0.00 0.00 38.22 3.86
345 346 3.129287 CCATTCCACAATGTAGTGCTTCC 59.871 47.826 0.00 0.00 38.22 3.46
346 347 3.788227 TTCCACAATGTAGTGCTTCCT 57.212 42.857 0.00 0.00 38.18 3.36
347 348 3.334583 TCCACAATGTAGTGCTTCCTC 57.665 47.619 0.00 0.00 38.18 3.71
348 349 2.906389 TCCACAATGTAGTGCTTCCTCT 59.094 45.455 0.00 0.00 38.18 3.69
349 350 4.093743 TCCACAATGTAGTGCTTCCTCTA 58.906 43.478 0.00 0.00 38.18 2.43
350 351 4.716784 TCCACAATGTAGTGCTTCCTCTAT 59.283 41.667 0.00 0.00 38.18 1.98
351 352 5.053145 CCACAATGTAGTGCTTCCTCTATC 58.947 45.833 0.00 0.00 38.18 2.08
352 353 5.053145 CACAATGTAGTGCTTCCTCTATCC 58.947 45.833 0.00 0.00 32.04 2.59
353 354 4.101741 ACAATGTAGTGCTTCCTCTATCCC 59.898 45.833 0.00 0.00 0.00 3.85
354 355 2.679082 TGTAGTGCTTCCTCTATCCCC 58.321 52.381 0.00 0.00 0.00 4.81
355 356 1.614413 GTAGTGCTTCCTCTATCCCCG 59.386 57.143 0.00 0.00 0.00 5.73
356 357 0.032017 AGTGCTTCCTCTATCCCCGT 60.032 55.000 0.00 0.00 0.00 5.28
357 358 0.105039 GTGCTTCCTCTATCCCCGTG 59.895 60.000 0.00 0.00 0.00 4.94
358 359 1.069935 GCTTCCTCTATCCCCGTGC 59.930 63.158 0.00 0.00 0.00 5.34
359 360 1.403687 GCTTCCTCTATCCCCGTGCT 61.404 60.000 0.00 0.00 0.00 4.40
360 361 1.123928 CTTCCTCTATCCCCGTGCTT 58.876 55.000 0.00 0.00 0.00 3.91
361 362 1.069358 CTTCCTCTATCCCCGTGCTTC 59.931 57.143 0.00 0.00 0.00 3.86
362 363 0.032515 TCCTCTATCCCCGTGCTTCA 60.033 55.000 0.00 0.00 0.00 3.02
363 364 0.830648 CCTCTATCCCCGTGCTTCAA 59.169 55.000 0.00 0.00 0.00 2.69
364 365 1.473434 CCTCTATCCCCGTGCTTCAAC 60.473 57.143 0.00 0.00 0.00 3.18
365 366 1.482593 CTCTATCCCCGTGCTTCAACT 59.517 52.381 0.00 0.00 0.00 3.16
366 367 1.906574 TCTATCCCCGTGCTTCAACTT 59.093 47.619 0.00 0.00 0.00 2.66
367 368 2.304761 TCTATCCCCGTGCTTCAACTTT 59.695 45.455 0.00 0.00 0.00 2.66
368 369 1.247567 ATCCCCGTGCTTCAACTTTG 58.752 50.000 0.00 0.00 0.00 2.77
369 370 0.181587 TCCCCGTGCTTCAACTTTGA 59.818 50.000 0.00 0.00 34.92 2.69
370 371 0.310854 CCCCGTGCTTCAACTTTGAC 59.689 55.000 0.00 0.00 36.83 3.18
371 372 0.310854 CCCGTGCTTCAACTTTGACC 59.689 55.000 0.00 0.00 36.83 4.02
372 373 0.041312 CCGTGCTTCAACTTTGACCG 60.041 55.000 0.00 0.00 36.83 4.79
373 374 0.655733 CGTGCTTCAACTTTGACCGT 59.344 50.000 0.00 0.00 36.83 4.83
374 375 1.862201 CGTGCTTCAACTTTGACCGTA 59.138 47.619 0.00 0.00 36.83 4.02
375 376 2.285756 CGTGCTTCAACTTTGACCGTAA 59.714 45.455 0.00 0.00 36.83 3.18
376 377 3.242478 CGTGCTTCAACTTTGACCGTAAA 60.242 43.478 0.00 0.00 36.83 2.01
377 378 4.553938 CGTGCTTCAACTTTGACCGTAAAT 60.554 41.667 0.00 0.00 36.83 1.40
378 379 5.278604 GTGCTTCAACTTTGACCGTAAATT 58.721 37.500 0.00 0.00 36.83 1.82
379 380 5.746721 GTGCTTCAACTTTGACCGTAAATTT 59.253 36.000 0.00 0.00 36.83 1.82
380 381 6.913673 GTGCTTCAACTTTGACCGTAAATTTA 59.086 34.615 0.00 0.00 36.83 1.40
381 382 7.432838 GTGCTTCAACTTTGACCGTAAATTTAA 59.567 33.333 0.00 0.00 36.83 1.52
382 383 7.432838 TGCTTCAACTTTGACCGTAAATTTAAC 59.567 33.333 0.00 0.00 36.83 2.01
383 384 7.646526 GCTTCAACTTTGACCGTAAATTTAACT 59.353 33.333 0.00 0.00 36.83 2.24
392 393 8.483307 TGACCGTAAATTTAACTATCAAGACC 57.517 34.615 0.00 0.00 0.00 3.85
393 394 7.276218 TGACCGTAAATTTAACTATCAAGACCG 59.724 37.037 0.00 0.00 0.00 4.79
394 395 7.322664 ACCGTAAATTTAACTATCAAGACCGA 58.677 34.615 0.00 0.00 0.00 4.69
395 396 7.983484 ACCGTAAATTTAACTATCAAGACCGAT 59.017 33.333 0.00 0.00 0.00 4.18
396 397 8.823818 CCGTAAATTTAACTATCAAGACCGATT 58.176 33.333 0.00 0.00 0.00 3.34
397 398 9.632969 CGTAAATTTAACTATCAAGACCGATTG 57.367 33.333 0.00 0.00 0.00 2.67
398 399 9.434559 GTAAATTTAACTATCAAGACCGATTGC 57.565 33.333 0.00 0.00 0.00 3.56
399 400 5.712217 TTTAACTATCAAGACCGATTGCG 57.288 39.130 0.00 0.00 37.24 4.85
423 424 5.409643 CGGGAGCAAAAGTTATATCAGTG 57.590 43.478 0.00 0.00 0.00 3.66
424 425 5.116180 CGGGAGCAAAAGTTATATCAGTGA 58.884 41.667 0.00 0.00 0.00 3.41
425 426 5.584649 CGGGAGCAAAAGTTATATCAGTGAA 59.415 40.000 0.00 0.00 0.00 3.18
426 427 6.260936 CGGGAGCAAAAGTTATATCAGTGAAT 59.739 38.462 0.00 0.00 0.00 2.57
427 428 7.201732 CGGGAGCAAAAGTTATATCAGTGAATT 60.202 37.037 0.00 0.00 0.00 2.17
428 429 8.131731 GGGAGCAAAAGTTATATCAGTGAATTC 58.868 37.037 0.00 0.00 0.00 2.17
429 430 7.852945 GGAGCAAAAGTTATATCAGTGAATTCG 59.147 37.037 0.00 0.00 0.00 3.34
430 431 8.268850 AGCAAAAGTTATATCAGTGAATTCGT 57.731 30.769 0.00 0.00 0.00 3.85
431 432 9.378551 AGCAAAAGTTATATCAGTGAATTCGTA 57.621 29.630 0.00 0.00 0.00 3.43
436 437 9.961265 AAGTTATATCAGTGAATTCGTATTCGA 57.039 29.630 9.79 2.59 42.55 3.71
472 473 6.753107 ATTATGTAACTTTTTCTCCCACCG 57.247 37.500 0.00 0.00 0.00 4.94
473 474 2.223745 TGTAACTTTTTCTCCCACCGC 58.776 47.619 0.00 0.00 0.00 5.68
474 475 2.223745 GTAACTTTTTCTCCCACCGCA 58.776 47.619 0.00 0.00 0.00 5.69
475 476 1.318576 AACTTTTTCTCCCACCGCAG 58.681 50.000 0.00 0.00 0.00 5.18
476 477 0.182775 ACTTTTTCTCCCACCGCAGT 59.817 50.000 0.00 0.00 0.00 4.40
477 478 0.875059 CTTTTTCTCCCACCGCAGTC 59.125 55.000 0.00 0.00 0.00 3.51
478 479 0.882927 TTTTTCTCCCACCGCAGTCG 60.883 55.000 0.00 0.00 0.00 4.18
488 489 2.870161 CGCAGTCGGTCTCGTTCG 60.870 66.667 0.00 0.00 37.69 3.95
489 490 2.254651 GCAGTCGGTCTCGTTCGT 59.745 61.111 0.00 0.00 37.69 3.85
490 491 1.371389 GCAGTCGGTCTCGTTCGTT 60.371 57.895 0.00 0.00 37.69 3.85
491 492 0.110056 GCAGTCGGTCTCGTTCGTTA 60.110 55.000 0.00 0.00 37.69 3.18
492 493 1.664016 GCAGTCGGTCTCGTTCGTTAA 60.664 52.381 0.00 0.00 37.69 2.01
493 494 2.653890 CAGTCGGTCTCGTTCGTTAAA 58.346 47.619 0.00 0.00 37.69 1.52
494 495 3.240069 CAGTCGGTCTCGTTCGTTAAAT 58.760 45.455 0.00 0.00 37.69 1.40
495 496 3.671928 CAGTCGGTCTCGTTCGTTAAATT 59.328 43.478 0.00 0.00 37.69 1.82
496 497 4.149396 CAGTCGGTCTCGTTCGTTAAATTT 59.851 41.667 0.00 0.00 37.69 1.82
497 498 5.343058 CAGTCGGTCTCGTTCGTTAAATTTA 59.657 40.000 0.00 0.00 37.69 1.40
498 499 6.034256 CAGTCGGTCTCGTTCGTTAAATTTAT 59.966 38.462 0.00 0.00 37.69 1.40
499 500 7.218773 CAGTCGGTCTCGTTCGTTAAATTTATA 59.781 37.037 0.00 0.00 37.69 0.98
500 501 7.430502 AGTCGGTCTCGTTCGTTAAATTTATAG 59.569 37.037 0.00 0.00 37.69 1.31
501 502 7.218963 GTCGGTCTCGTTCGTTAAATTTATAGT 59.781 37.037 0.00 0.00 37.69 2.12
502 503 7.429340 TCGGTCTCGTTCGTTAAATTTATAGTC 59.571 37.037 0.00 0.00 37.69 2.59
503 504 7.218773 CGGTCTCGTTCGTTAAATTTATAGTCA 59.781 37.037 0.00 0.00 0.00 3.41
504 505 8.863049 GGTCTCGTTCGTTAAATTTATAGTCAA 58.137 33.333 0.00 0.00 0.00 3.18
513 514 9.469239 CGTTAAATTTATAGTCAAAGTTCGACC 57.531 33.333 0.00 0.00 33.70 4.79
516 517 7.521509 AATTTATAGTCAAAGTTCGACCTCG 57.478 36.000 0.00 0.00 41.45 4.63
517 518 3.505464 ATAGTCAAAGTTCGACCTCGG 57.495 47.619 0.00 0.00 40.29 4.63
518 519 0.317479 AGTCAAAGTTCGACCTCGGG 59.683 55.000 0.00 0.00 40.29 5.14
519 520 0.316204 GTCAAAGTTCGACCTCGGGA 59.684 55.000 0.00 0.00 40.29 5.14
520 521 1.042229 TCAAAGTTCGACCTCGGGAA 58.958 50.000 0.00 0.00 40.29 3.97
521 522 1.000506 TCAAAGTTCGACCTCGGGAAG 59.999 52.381 0.00 0.00 40.29 3.46
522 523 0.320508 AAAGTTCGACCTCGGGAAGC 60.321 55.000 0.00 0.00 40.29 3.86
523 524 2.488087 AAGTTCGACCTCGGGAAGCG 62.488 60.000 0.00 0.00 40.29 4.68
524 525 4.430765 TTCGACCTCGGGAAGCGC 62.431 66.667 0.00 0.00 40.29 5.92
539 540 3.637714 CGCGGGCGCACTATATTT 58.362 55.556 8.62 0.00 42.06 1.40
540 541 1.938861 CGCGGGCGCACTATATTTT 59.061 52.632 8.62 0.00 42.06 1.82
541 542 0.384230 CGCGGGCGCACTATATTTTG 60.384 55.000 8.62 0.00 42.06 2.44
542 543 0.941542 GCGGGCGCACTATATTTTGA 59.058 50.000 8.62 0.00 41.49 2.69
543 544 1.332375 GCGGGCGCACTATATTTTGAA 59.668 47.619 8.62 0.00 41.49 2.69
544 545 2.223386 GCGGGCGCACTATATTTTGAAA 60.223 45.455 8.62 0.00 41.49 2.69
545 546 3.550030 GCGGGCGCACTATATTTTGAAAT 60.550 43.478 8.62 0.00 41.49 2.17
546 547 3.974401 CGGGCGCACTATATTTTGAAATG 59.026 43.478 8.62 0.00 0.00 2.32
547 548 4.298332 GGGCGCACTATATTTTGAAATGG 58.702 43.478 10.83 0.00 0.00 3.16
548 549 4.037446 GGGCGCACTATATTTTGAAATGGA 59.963 41.667 10.83 0.00 0.00 3.41
549 550 5.215160 GGCGCACTATATTTTGAAATGGAG 58.785 41.667 10.83 0.06 0.00 3.86
550 551 5.215160 GCGCACTATATTTTGAAATGGAGG 58.785 41.667 0.30 0.00 0.00 4.30
551 552 5.762045 CGCACTATATTTTGAAATGGAGGG 58.238 41.667 0.00 0.00 0.00 4.30
552 553 5.530915 CGCACTATATTTTGAAATGGAGGGA 59.469 40.000 0.00 0.00 0.00 4.20
553 554 6.293626 CGCACTATATTTTGAAATGGAGGGAG 60.294 42.308 0.00 0.00 0.00 4.30
554 555 6.547510 GCACTATATTTTGAAATGGAGGGAGT 59.452 38.462 0.00 0.00 0.00 3.85
555 556 7.719633 GCACTATATTTTGAAATGGAGGGAGTA 59.280 37.037 0.00 0.00 0.00 2.59
556 557 9.799106 CACTATATTTTGAAATGGAGGGAGTAT 57.201 33.333 0.00 0.00 0.00 2.12
561 562 7.954666 TTTTGAAATGGAGGGAGTATTTAGG 57.045 36.000 0.00 0.00 0.00 2.69
562 563 6.901615 TTGAAATGGAGGGAGTATTTAGGA 57.098 37.500 0.00 0.00 0.00 2.94
563 564 6.901615 TGAAATGGAGGGAGTATTTAGGAA 57.098 37.500 0.00 0.00 0.00 3.36
564 565 6.659824 TGAAATGGAGGGAGTATTTAGGAAC 58.340 40.000 0.00 0.00 0.00 3.62
565 566 4.957684 ATGGAGGGAGTATTTAGGAACG 57.042 45.455 0.00 0.00 0.00 3.95
566 567 3.036091 TGGAGGGAGTATTTAGGAACGG 58.964 50.000 0.00 0.00 0.00 4.44
567 568 3.303049 GGAGGGAGTATTTAGGAACGGA 58.697 50.000 0.00 0.00 0.00 4.69
568 569 3.321396 GGAGGGAGTATTTAGGAACGGAG 59.679 52.174 0.00 0.00 0.00 4.63
569 570 3.306613 AGGGAGTATTTAGGAACGGAGG 58.693 50.000 0.00 0.00 0.00 4.30
570 571 2.367894 GGGAGTATTTAGGAACGGAGGG 59.632 54.545 0.00 0.00 0.00 4.30
571 572 3.303049 GGAGTATTTAGGAACGGAGGGA 58.697 50.000 0.00 0.00 0.00 4.20
572 573 3.321396 GGAGTATTTAGGAACGGAGGGAG 59.679 52.174 0.00 0.00 0.00 4.30
573 574 3.959449 GAGTATTTAGGAACGGAGGGAGT 59.041 47.826 0.00 0.00 0.00 3.85
574 575 5.134725 AGTATTTAGGAACGGAGGGAGTA 57.865 43.478 0.00 0.00 0.00 2.59
575 576 5.139001 AGTATTTAGGAACGGAGGGAGTAG 58.861 45.833 0.00 0.00 0.00 2.57
576 577 3.744940 TTTAGGAACGGAGGGAGTAGA 57.255 47.619 0.00 0.00 0.00 2.59
577 578 3.967467 TTAGGAACGGAGGGAGTAGAT 57.033 47.619 0.00 0.00 0.00 1.98
578 579 2.850695 AGGAACGGAGGGAGTAGATT 57.149 50.000 0.00 0.00 0.00 2.40
579 580 3.967467 AGGAACGGAGGGAGTAGATTA 57.033 47.619 0.00 0.00 0.00 1.75
580 581 3.834938 AGGAACGGAGGGAGTAGATTAG 58.165 50.000 0.00 0.00 0.00 1.73
581 582 3.462579 AGGAACGGAGGGAGTAGATTAGA 59.537 47.826 0.00 0.00 0.00 2.10
582 583 4.079327 AGGAACGGAGGGAGTAGATTAGAA 60.079 45.833 0.00 0.00 0.00 2.10
583 584 4.278919 GGAACGGAGGGAGTAGATTAGAAG 59.721 50.000 0.00 0.00 0.00 2.85
584 585 4.523168 ACGGAGGGAGTAGATTAGAAGT 57.477 45.455 0.00 0.00 0.00 3.01
585 586 4.869451 ACGGAGGGAGTAGATTAGAAGTT 58.131 43.478 0.00 0.00 0.00 2.66
586 587 5.270794 ACGGAGGGAGTAGATTAGAAGTTT 58.729 41.667 0.00 0.00 0.00 2.66
587 588 5.720520 ACGGAGGGAGTAGATTAGAAGTTTT 59.279 40.000 0.00 0.00 0.00 2.43
588 589 6.212993 ACGGAGGGAGTAGATTAGAAGTTTTT 59.787 38.462 0.00 0.00 0.00 1.94
623 624 4.543590 AACAGTGTTGGAGATGACCTAG 57.456 45.455 7.96 0.00 0.00 3.02
628 629 2.023404 TGTTGGAGATGACCTAGCCCTA 60.023 50.000 0.00 0.00 0.00 3.53
633 634 3.322541 GGAGATGACCTAGCCCTAAGAAC 59.677 52.174 0.00 0.00 0.00 3.01
634 635 3.310193 AGATGACCTAGCCCTAAGAACC 58.690 50.000 0.00 0.00 0.00 3.62
635 636 1.481871 TGACCTAGCCCTAAGAACCG 58.518 55.000 0.00 0.00 0.00 4.44
636 637 0.751452 GACCTAGCCCTAAGAACCGG 59.249 60.000 0.00 0.00 0.00 5.28
637 638 0.690077 ACCTAGCCCTAAGAACCGGG 60.690 60.000 6.32 0.00 43.60 5.73
638 639 0.690077 CCTAGCCCTAAGAACCGGGT 60.690 60.000 6.32 0.00 42.67 5.28
670 677 0.108424 CTTCCTCCCTTGCTCACTCG 60.108 60.000 0.00 0.00 0.00 4.18
688 695 1.000396 GCCAAGCATTCCAGGTCCT 60.000 57.895 0.00 0.00 0.00 3.85
689 696 1.318158 GCCAAGCATTCCAGGTCCTG 61.318 60.000 12.40 12.40 0.00 3.86
708 715 3.323403 CCTGGAAGCATCTAGACCTAAGG 59.677 52.174 3.63 0.19 36.31 2.69
728 735 0.392998 ATTTACGCAGCCCAGTCCAG 60.393 55.000 0.00 0.00 0.00 3.86
789 796 0.473117 ACGGTTCTCCTGGGAGGAAA 60.473 55.000 15.66 2.24 45.28 3.13
876 883 4.788617 ACCCCACAAGATCTACAGGTAAAT 59.211 41.667 0.00 0.00 0.00 1.40
891 898 4.033358 CAGGTAAATGATCAACGAGCTCAC 59.967 45.833 15.40 0.00 0.00 3.51
1104 1125 2.104859 CGAGGTCCTGCAGCATGTG 61.105 63.158 8.66 0.00 39.31 3.21
1269 1290 1.102809 TTGTGAACCACCTGCTGCTG 61.103 55.000 0.00 0.00 32.73 4.41
1405 1426 5.462530 TCGAGTCCTCAGTGTTCATTTAA 57.537 39.130 0.00 0.00 0.00 1.52
1734 1755 3.531538 CATGCCATCGTTAGTAACAGGT 58.468 45.455 13.33 0.00 0.00 4.00
1794 1815 0.466543 AAGCTGGTGGTTCGTGTGTA 59.533 50.000 0.00 0.00 0.00 2.90
1816 1837 8.177663 GTGTAGATGATACCTGTGAAAATTGTG 58.822 37.037 0.00 0.00 0.00 3.33
1823 1844 3.772025 ACCTGTGAAAATTGTGGTTCCAA 59.228 39.130 0.00 0.00 0.00 3.53
1826 1847 4.701765 TGTGAAAATTGTGGTTCCAATGG 58.298 39.130 0.00 0.00 35.30 3.16
1832 1853 1.921982 TGTGGTTCCAATGGTGATGG 58.078 50.000 0.00 0.00 39.41 3.51
1856 1877 2.740981 GTGGAGATTGTGTGCTTCTCAG 59.259 50.000 0.00 0.00 38.08 3.35
1869 1890 3.181451 TGCTTCTCAGTGGTTTGTCAGAT 60.181 43.478 0.00 0.00 0.00 2.90
1904 1925 3.077359 AGTTGATAGCTGAACCTTGTGC 58.923 45.455 0.00 0.00 0.00 4.57
1978 1999 9.587772 AACTGTGATATGTTATGTCTCTTACAC 57.412 33.333 0.00 0.00 42.09 2.90
1980 2001 9.242477 CTGTGATATGTTATGTCTCTTACACTG 57.758 37.037 0.00 0.00 42.09 3.66
2050 2071 6.317642 TGTTTGCACCTGTACATTATATGGAC 59.682 38.462 0.00 0.00 44.58 4.02
2054 2075 7.973402 TGCACCTGTACATTATATGGACTTAT 58.027 34.615 0.00 0.00 44.62 1.73
2112 2133 8.289618 TGTTACTTCTGAAATCATACTTTGTGC 58.710 33.333 0.00 0.00 0.00 4.57
2113 2134 8.507249 GTTACTTCTGAAATCATACTTTGTGCT 58.493 33.333 0.00 0.00 0.00 4.40
2114 2135 7.516198 ACTTCTGAAATCATACTTTGTGCTT 57.484 32.000 0.00 0.00 0.00 3.91
2137 2158 5.521906 TGCAAGCACAGGTTTAATGTTTA 57.478 34.783 0.00 0.00 0.00 2.01
2325 2371 5.860941 TTGCTTTTCAATACTTGTGGGAA 57.139 34.783 0.00 0.00 0.00 3.97
2414 2460 8.374743 ACCCATTTGCATTTTCTGTAGTTTATT 58.625 29.630 0.00 0.00 0.00 1.40
2549 2595 3.057174 CACCTGTTCTCGAGAAGCTTACT 60.057 47.826 27.70 6.19 34.27 2.24
2576 2622 4.877823 CAGCTTTGTCAGGTATATGCTTCA 59.122 41.667 0.00 0.00 0.00 3.02
2715 2764 1.737793 GGGACAACCGTTTGCATCTAG 59.262 52.381 0.00 0.00 36.00 2.43
2895 2944 0.407528 TAGGCCCCAATTGCACTTCA 59.592 50.000 0.00 0.00 0.00 3.02
2902 2951 3.007182 CCCCAATTGCACTTCAGTTGATT 59.993 43.478 0.00 0.00 42.83 2.57
2903 2952 4.503643 CCCCAATTGCACTTCAGTTGATTT 60.504 41.667 0.00 0.00 42.83 2.17
2904 2953 4.449743 CCCAATTGCACTTCAGTTGATTTG 59.550 41.667 0.00 0.00 42.83 2.32
3128 6434 1.818642 AGTTGAACAGCAGCAGATCC 58.181 50.000 0.00 0.00 0.00 3.36
3348 6654 7.123355 TGATCATCCATTGTCACTACATGTA 57.877 36.000 5.25 5.25 34.97 2.29
3537 6845 5.003804 TCCAAAAGAGCAACTCCAATAGAC 58.996 41.667 0.00 0.00 0.00 2.59
3588 6897 9.196552 CTGAAATTCCTGAAATTTGTTAAGTCC 57.803 33.333 0.00 0.00 45.47 3.85
3633 6942 7.715657 ACATCACTTAGCTGTTTTCAAAATGA 58.284 30.769 0.00 0.00 0.00 2.57
3837 7149 4.949856 ACCACTTTGCGATTTTCATAGGAT 59.050 37.500 0.00 0.00 0.00 3.24
3840 7152 7.122055 ACCACTTTGCGATTTTCATAGGATTTA 59.878 33.333 0.00 0.00 0.00 1.40
3867 7179 3.071874 TGCATCGAAAGGATTTGGTCT 57.928 42.857 0.00 0.00 39.27 3.85
3907 7219 9.654663 GGAGTTTGTCATGTATACTTTCTACTT 57.345 33.333 4.17 0.00 0.00 2.24
3985 7297 6.318913 AGAGGGCTAGTCAGTGTAATATCAT 58.681 40.000 0.00 0.00 0.00 2.45
3997 7311 9.740710 TCAGTGTAATATCATAAGCTAGCTAGA 57.259 33.333 25.15 16.50 0.00 2.43
4166 7487 2.033141 GCCAGGAGTGAGCTGCAA 59.967 61.111 1.02 0.00 35.34 4.08
4202 7523 4.253257 GCGACGAGCGGGAGGTAG 62.253 72.222 0.00 0.00 43.00 3.18
4203 7524 4.253257 CGACGAGCGGGAGGTAGC 62.253 72.222 0.00 0.00 43.00 3.58
4204 7525 4.253257 GACGAGCGGGAGGTAGCG 62.253 72.222 0.00 0.00 43.00 4.26
4227 7548 4.669842 AGCGAGCGTCAGCAGCAA 62.670 61.111 11.89 0.00 46.52 3.91
4241 7562 3.384927 GCAAGCAGCGGTAGTACG 58.615 61.111 0.00 0.00 0.00 3.67
4249 7570 2.490217 CGGTAGTACGCAGCAGCT 59.510 61.111 0.00 0.00 39.10 4.24
4250 7571 1.874019 CGGTAGTACGCAGCAGCTG 60.874 63.158 18.93 18.93 39.10 4.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.933021 ATTGTGGTAGACAGTCGGGA 58.067 50.000 0.00 0.00 35.44 5.14
3 4 4.451629 ACTTATTGTGGTAGACAGTCGG 57.548 45.455 0.00 0.00 35.44 4.79
4 5 6.590357 CAAAACTTATTGTGGTAGACAGTCG 58.410 40.000 0.00 0.00 35.44 4.18
5 6 6.371389 GCAAAACTTATTGTGGTAGACAGTC 58.629 40.000 0.00 0.00 35.44 3.51
6 7 5.240844 GGCAAAACTTATTGTGGTAGACAGT 59.759 40.000 0.00 0.00 35.44 3.55
7 8 5.335661 GGGCAAAACTTATTGTGGTAGACAG 60.336 44.000 0.00 0.00 35.44 3.51
8 9 4.521256 GGGCAAAACTTATTGTGGTAGACA 59.479 41.667 0.00 0.00 32.80 3.41
9 10 4.379082 CGGGCAAAACTTATTGTGGTAGAC 60.379 45.833 0.00 0.00 32.80 2.59
10 11 3.754323 CGGGCAAAACTTATTGTGGTAGA 59.246 43.478 0.00 0.00 32.80 2.59
11 12 3.754323 TCGGGCAAAACTTATTGTGGTAG 59.246 43.478 0.00 0.00 32.80 3.18
12 13 3.502979 GTCGGGCAAAACTTATTGTGGTA 59.497 43.478 0.00 0.00 32.80 3.25
13 14 2.295070 GTCGGGCAAAACTTATTGTGGT 59.705 45.455 0.00 0.00 32.80 4.16
14 15 2.556622 AGTCGGGCAAAACTTATTGTGG 59.443 45.455 0.00 0.00 32.80 4.17
15 16 3.365969 GGAGTCGGGCAAAACTTATTGTG 60.366 47.826 0.00 0.00 32.80 3.33
16 17 2.817844 GGAGTCGGGCAAAACTTATTGT 59.182 45.455 0.00 0.00 32.80 2.71
17 18 2.159572 CGGAGTCGGGCAAAACTTATTG 60.160 50.000 0.00 0.00 0.00 1.90
18 19 2.081462 CGGAGTCGGGCAAAACTTATT 58.919 47.619 0.00 0.00 0.00 1.40
19 20 1.734163 CGGAGTCGGGCAAAACTTAT 58.266 50.000 0.00 0.00 0.00 1.73
20 21 3.220447 CGGAGTCGGGCAAAACTTA 57.780 52.632 0.00 0.00 0.00 2.24
21 22 4.058797 CGGAGTCGGGCAAAACTT 57.941 55.556 0.00 0.00 0.00 2.66
40 41 3.917760 GTCATCGCCCCTCCCTCG 61.918 72.222 0.00 0.00 0.00 4.63
41 42 3.917760 CGTCATCGCCCCTCCCTC 61.918 72.222 0.00 0.00 0.00 4.30
45 46 4.899239 CTGCCGTCATCGCCCCTC 62.899 72.222 0.00 0.00 35.54 4.30
49 50 3.945434 CATGCTGCCGTCATCGCC 61.945 66.667 0.00 0.00 35.54 5.54
50 51 4.602696 GCATGCTGCCGTCATCGC 62.603 66.667 11.37 0.00 37.42 4.58
66 67 0.723981 CACTTAAGCGAGCAGAAGGC 59.276 55.000 1.29 0.00 45.30 4.35
67 68 0.723981 GCACTTAAGCGAGCAGAAGG 59.276 55.000 1.29 4.56 0.00 3.46
68 69 1.719600 AGCACTTAAGCGAGCAGAAG 58.280 50.000 14.96 2.88 40.15 2.85
69 70 1.800586 CAAGCACTTAAGCGAGCAGAA 59.199 47.619 14.96 0.00 40.15 3.02
70 71 1.270305 ACAAGCACTTAAGCGAGCAGA 60.270 47.619 14.96 0.00 40.15 4.26
71 72 1.151668 ACAAGCACTTAAGCGAGCAG 58.848 50.000 14.96 10.31 40.15 4.24
72 73 2.288825 ACTACAAGCACTTAAGCGAGCA 60.289 45.455 14.96 0.00 40.15 4.26
73 74 2.338500 ACTACAAGCACTTAAGCGAGC 58.662 47.619 1.29 4.73 40.15 5.03
74 75 2.594654 CGACTACAAGCACTTAAGCGAG 59.405 50.000 1.29 0.00 40.15 5.03
75 76 2.030540 ACGACTACAAGCACTTAAGCGA 60.031 45.455 1.29 0.00 40.15 4.93
76 77 2.325761 ACGACTACAAGCACTTAAGCG 58.674 47.619 1.29 0.00 40.15 4.68
77 78 2.341760 CGACGACTACAAGCACTTAAGC 59.658 50.000 1.29 0.00 0.00 3.09
78 79 2.341760 GCGACGACTACAAGCACTTAAG 59.658 50.000 0.00 0.00 0.00 1.85
79 80 2.030540 AGCGACGACTACAAGCACTTAA 60.031 45.455 0.00 0.00 0.00 1.85
80 81 1.538512 AGCGACGACTACAAGCACTTA 59.461 47.619 0.00 0.00 0.00 2.24
81 82 0.314302 AGCGACGACTACAAGCACTT 59.686 50.000 0.00 0.00 0.00 3.16
82 83 1.130749 CTAGCGACGACTACAAGCACT 59.869 52.381 0.00 0.00 0.00 4.40
83 84 1.536149 CTAGCGACGACTACAAGCAC 58.464 55.000 0.00 0.00 0.00 4.40
84 85 0.450583 CCTAGCGACGACTACAAGCA 59.549 55.000 0.00 0.00 0.00 3.91
85 86 0.450983 ACCTAGCGACGACTACAAGC 59.549 55.000 0.00 0.00 0.00 4.01
86 87 1.202154 CCACCTAGCGACGACTACAAG 60.202 57.143 0.00 0.00 0.00 3.16
87 88 0.806868 CCACCTAGCGACGACTACAA 59.193 55.000 0.00 0.00 0.00 2.41
88 89 0.321919 ACCACCTAGCGACGACTACA 60.322 55.000 0.00 0.00 0.00 2.74
89 90 0.376502 GACCACCTAGCGACGACTAC 59.623 60.000 0.00 0.00 0.00 2.73
90 91 0.251354 AGACCACCTAGCGACGACTA 59.749 55.000 0.00 0.00 0.00 2.59
91 92 0.251354 TAGACCACCTAGCGACGACT 59.749 55.000 0.00 0.00 0.00 4.18
92 93 0.376502 GTAGACCACCTAGCGACGAC 59.623 60.000 0.00 0.00 0.00 4.34
93 94 1.086067 CGTAGACCACCTAGCGACGA 61.086 60.000 0.00 0.00 0.00 4.20
94 95 1.351012 CGTAGACCACCTAGCGACG 59.649 63.158 0.00 0.00 0.00 5.12
95 96 0.745845 TCCGTAGACCACCTAGCGAC 60.746 60.000 0.00 0.00 0.00 5.19
96 97 0.745845 GTCCGTAGACCACCTAGCGA 60.746 60.000 0.00 0.00 37.00 4.93
97 98 1.726265 GTCCGTAGACCACCTAGCG 59.274 63.158 0.00 0.00 37.00 4.26
106 107 4.667519 AATTACATCCAGGTCCGTAGAC 57.332 45.455 0.00 0.00 42.73 2.59
107 108 5.687166 AAAATTACATCCAGGTCCGTAGA 57.313 39.130 0.00 0.00 0.00 2.59
108 109 8.446599 AATAAAAATTACATCCAGGTCCGTAG 57.553 34.615 0.00 0.00 0.00 3.51
110 111 8.990163 ATAATAAAAATTACATCCAGGTCCGT 57.010 30.769 0.00 0.00 0.00 4.69
131 132 8.349983 GGCAATACAACGAATACCAGAAATAAT 58.650 33.333 0.00 0.00 0.00 1.28
132 133 7.337184 TGGCAATACAACGAATACCAGAAATAA 59.663 33.333 0.00 0.00 0.00 1.40
133 134 6.824196 TGGCAATACAACGAATACCAGAAATA 59.176 34.615 0.00 0.00 0.00 1.40
134 135 5.650266 TGGCAATACAACGAATACCAGAAAT 59.350 36.000 0.00 0.00 0.00 2.17
135 136 5.004448 TGGCAATACAACGAATACCAGAAA 58.996 37.500 0.00 0.00 0.00 2.52
136 137 4.580868 TGGCAATACAACGAATACCAGAA 58.419 39.130 0.00 0.00 0.00 3.02
137 138 4.209307 TGGCAATACAACGAATACCAGA 57.791 40.909 0.00 0.00 0.00 3.86
138 139 4.574421 TCATGGCAATACAACGAATACCAG 59.426 41.667 0.00 0.00 0.00 4.00
139 140 4.518249 TCATGGCAATACAACGAATACCA 58.482 39.130 0.00 0.00 0.00 3.25
140 141 5.689383 ATCATGGCAATACAACGAATACC 57.311 39.130 0.00 0.00 0.00 2.73
141 142 6.724263 TCAATCATGGCAATACAACGAATAC 58.276 36.000 0.00 0.00 0.00 1.89
142 143 6.934048 TCAATCATGGCAATACAACGAATA 57.066 33.333 0.00 0.00 0.00 1.75
143 144 5.833406 TCAATCATGGCAATACAACGAAT 57.167 34.783 0.00 0.00 0.00 3.34
144 145 5.414144 TCTTCAATCATGGCAATACAACGAA 59.586 36.000 0.00 0.00 0.00 3.85
145 146 4.940654 TCTTCAATCATGGCAATACAACGA 59.059 37.500 0.00 0.00 0.00 3.85
146 147 5.233957 TCTTCAATCATGGCAATACAACG 57.766 39.130 0.00 0.00 0.00 4.10
147 148 6.798482 TCATCTTCAATCATGGCAATACAAC 58.202 36.000 0.00 0.00 0.00 3.32
148 149 7.407393 TTCATCTTCAATCATGGCAATACAA 57.593 32.000 0.00 0.00 0.00 2.41
149 150 7.591421 ATTCATCTTCAATCATGGCAATACA 57.409 32.000 0.00 0.00 0.00 2.29
150 151 8.790718 AGTATTCATCTTCAATCATGGCAATAC 58.209 33.333 0.00 0.00 0.00 1.89
151 152 8.929260 AGTATTCATCTTCAATCATGGCAATA 57.071 30.769 0.00 0.00 0.00 1.90
152 153 7.039923 GGAGTATTCATCTTCAATCATGGCAAT 60.040 37.037 0.00 0.00 0.00 3.56
153 154 6.263842 GGAGTATTCATCTTCAATCATGGCAA 59.736 38.462 0.00 0.00 0.00 4.52
154 155 5.766670 GGAGTATTCATCTTCAATCATGGCA 59.233 40.000 0.00 0.00 0.00 4.92
155 156 5.182760 GGGAGTATTCATCTTCAATCATGGC 59.817 44.000 0.00 0.00 0.00 4.40
156 157 6.540995 AGGGAGTATTCATCTTCAATCATGG 58.459 40.000 0.00 0.00 0.00 3.66
157 158 6.654161 GGAGGGAGTATTCATCTTCAATCATG 59.346 42.308 0.00 0.00 0.00 3.07
158 159 6.519721 CGGAGGGAGTATTCATCTTCAATCAT 60.520 42.308 0.00 0.00 0.00 2.45
159 160 5.221521 CGGAGGGAGTATTCATCTTCAATCA 60.222 44.000 0.00 0.00 0.00 2.57
160 161 5.221541 ACGGAGGGAGTATTCATCTTCAATC 60.222 44.000 0.00 0.00 0.00 2.67
161 162 4.656112 ACGGAGGGAGTATTCATCTTCAAT 59.344 41.667 0.00 0.00 0.00 2.57
162 163 4.030913 ACGGAGGGAGTATTCATCTTCAA 58.969 43.478 0.00 0.00 0.00 2.69
163 164 3.643237 ACGGAGGGAGTATTCATCTTCA 58.357 45.455 0.00 0.00 0.00 3.02
164 165 4.501743 GGAACGGAGGGAGTATTCATCTTC 60.502 50.000 0.00 0.00 0.00 2.87
165 166 3.388350 GGAACGGAGGGAGTATTCATCTT 59.612 47.826 0.00 0.00 0.00 2.40
166 167 2.966516 GGAACGGAGGGAGTATTCATCT 59.033 50.000 0.00 0.00 0.00 2.90
167 168 2.966516 AGGAACGGAGGGAGTATTCATC 59.033 50.000 0.00 0.00 0.00 2.92
168 169 3.047695 AGGAACGGAGGGAGTATTCAT 57.952 47.619 0.00 0.00 0.00 2.57
169 170 2.544844 AGGAACGGAGGGAGTATTCA 57.455 50.000 0.00 0.00 0.00 2.57
170 171 5.548181 ATTTAGGAACGGAGGGAGTATTC 57.452 43.478 0.00 0.00 0.00 1.75
171 172 8.731591 TTATATTTAGGAACGGAGGGAGTATT 57.268 34.615 0.00 0.00 0.00 1.89
172 173 7.093421 GCTTATATTTAGGAACGGAGGGAGTAT 60.093 40.741 0.00 0.00 0.00 2.12
173 174 6.210185 GCTTATATTTAGGAACGGAGGGAGTA 59.790 42.308 0.00 0.00 0.00 2.59
174 175 5.011840 GCTTATATTTAGGAACGGAGGGAGT 59.988 44.000 0.00 0.00 0.00 3.85
175 176 5.480205 GCTTATATTTAGGAACGGAGGGAG 58.520 45.833 0.00 0.00 0.00 4.30
176 177 4.285260 GGCTTATATTTAGGAACGGAGGGA 59.715 45.833 0.00 0.00 0.00 4.20
177 178 4.286291 AGGCTTATATTTAGGAACGGAGGG 59.714 45.833 0.00 0.00 0.00 4.30
178 179 5.485209 AGGCTTATATTTAGGAACGGAGG 57.515 43.478 0.00 0.00 0.00 4.30
179 180 6.766467 ACAAAGGCTTATATTTAGGAACGGAG 59.234 38.462 0.00 0.00 0.00 4.63
180 181 6.655930 ACAAAGGCTTATATTTAGGAACGGA 58.344 36.000 0.00 0.00 0.00 4.69
181 182 6.937436 ACAAAGGCTTATATTTAGGAACGG 57.063 37.500 0.00 0.00 0.00 4.44
182 183 8.882415 TCTACAAAGGCTTATATTTAGGAACG 57.118 34.615 0.00 0.00 0.00 3.95
195 196 9.959721 TTCATAGTAAAATCTCTACAAAGGCTT 57.040 29.630 0.00 0.00 0.00 4.35
196 197 9.384764 GTTCATAGTAAAATCTCTACAAAGGCT 57.615 33.333 0.00 0.00 0.00 4.58
197 198 8.613482 GGTTCATAGTAAAATCTCTACAAAGGC 58.387 37.037 0.00 0.00 0.00 4.35
198 199 9.667107 TGGTTCATAGTAAAATCTCTACAAAGG 57.333 33.333 0.00 0.00 0.00 3.11
204 205 9.961265 CGTATGTGGTTCATAGTAAAATCTCTA 57.039 33.333 0.00 0.00 39.36 2.43
205 206 7.926555 CCGTATGTGGTTCATAGTAAAATCTCT 59.073 37.037 0.00 0.00 39.36 3.10
206 207 7.924412 TCCGTATGTGGTTCATAGTAAAATCTC 59.076 37.037 0.00 0.00 39.36 2.75
207 208 7.788026 TCCGTATGTGGTTCATAGTAAAATCT 58.212 34.615 0.00 0.00 39.36 2.40
208 209 8.495949 CATCCGTATGTGGTTCATAGTAAAATC 58.504 37.037 0.00 0.00 39.36 2.17
209 210 7.990886 ACATCCGTATGTGGTTCATAGTAAAAT 59.009 33.333 0.00 0.00 44.79 1.82
210 211 7.332557 ACATCCGTATGTGGTTCATAGTAAAA 58.667 34.615 0.00 0.00 44.79 1.52
211 212 6.880484 ACATCCGTATGTGGTTCATAGTAAA 58.120 36.000 0.00 0.00 44.79 2.01
212 213 6.474140 ACATCCGTATGTGGTTCATAGTAA 57.526 37.500 0.00 0.00 44.79 2.24
213 214 7.770366 ATACATCCGTATGTGGTTCATAGTA 57.230 36.000 3.56 0.00 45.99 1.82
214 215 6.665992 ATACATCCGTATGTGGTTCATAGT 57.334 37.500 3.56 0.00 45.99 2.12
215 216 9.952188 CTATATACATCCGTATGTGGTTCATAG 57.048 37.037 3.56 0.80 45.99 2.23
216 217 9.689501 TCTATATACATCCGTATGTGGTTCATA 57.310 33.333 3.56 0.00 45.99 2.15
217 218 8.589701 TCTATATACATCCGTATGTGGTTCAT 57.410 34.615 3.56 0.00 45.99 2.57
218 219 8.466798 CATCTATATACATCCGTATGTGGTTCA 58.533 37.037 3.56 0.00 45.99 3.18
219 220 7.435488 GCATCTATATACATCCGTATGTGGTTC 59.565 40.741 3.56 0.00 45.99 3.62
220 221 7.093509 TGCATCTATATACATCCGTATGTGGTT 60.094 37.037 3.56 0.00 45.99 3.67
221 222 6.379988 TGCATCTATATACATCCGTATGTGGT 59.620 38.462 3.56 0.00 45.99 4.16
222 223 6.805713 TGCATCTATATACATCCGTATGTGG 58.194 40.000 3.56 0.00 45.99 4.17
223 224 8.877808 AATGCATCTATATACATCCGTATGTG 57.122 34.615 3.56 0.00 45.99 3.21
228 229 9.944376 ACTTTAAATGCATCTATATACATCCGT 57.056 29.630 0.00 0.00 0.00 4.69
250 251 9.860898 GGAGCAAAATGAATAAATCTACACTTT 57.139 29.630 0.00 0.00 0.00 2.66
251 252 8.184192 CGGAGCAAAATGAATAAATCTACACTT 58.816 33.333 0.00 0.00 0.00 3.16
252 253 7.336931 ACGGAGCAAAATGAATAAATCTACACT 59.663 33.333 0.00 0.00 0.00 3.55
253 254 7.472543 ACGGAGCAAAATGAATAAATCTACAC 58.527 34.615 0.00 0.00 0.00 2.90
254 255 7.624360 ACGGAGCAAAATGAATAAATCTACA 57.376 32.000 0.00 0.00 0.00 2.74
255 256 9.599322 CATACGGAGCAAAATGAATAAATCTAC 57.401 33.333 0.00 0.00 0.00 2.59
256 257 9.337396 ACATACGGAGCAAAATGAATAAATCTA 57.663 29.630 0.00 0.00 0.00 1.98
257 258 8.225603 ACATACGGAGCAAAATGAATAAATCT 57.774 30.769 0.00 0.00 0.00 2.40
258 259 9.599322 CTACATACGGAGCAAAATGAATAAATC 57.401 33.333 0.00 0.00 0.00 2.17
259 260 9.120538 ACTACATACGGAGCAAAATGAATAAAT 57.879 29.630 0.00 0.00 0.00 1.40
260 261 8.500753 ACTACATACGGAGCAAAATGAATAAA 57.499 30.769 0.00 0.00 0.00 1.40
261 262 7.225931 GGACTACATACGGAGCAAAATGAATAA 59.774 37.037 0.00 0.00 0.00 1.40
262 263 6.704493 GGACTACATACGGAGCAAAATGAATA 59.296 38.462 0.00 0.00 0.00 1.75
263 264 5.527582 GGACTACATACGGAGCAAAATGAAT 59.472 40.000 0.00 0.00 0.00 2.57
264 265 4.873827 GGACTACATACGGAGCAAAATGAA 59.126 41.667 0.00 0.00 0.00 2.57
265 266 4.081365 TGGACTACATACGGAGCAAAATGA 60.081 41.667 0.00 0.00 0.00 2.57
266 267 4.034048 GTGGACTACATACGGAGCAAAATG 59.966 45.833 0.00 0.00 0.00 2.32
267 268 4.081087 AGTGGACTACATACGGAGCAAAAT 60.081 41.667 0.00 0.00 0.00 1.82
268 269 3.259876 AGTGGACTACATACGGAGCAAAA 59.740 43.478 0.00 0.00 0.00 2.44
269 270 2.829720 AGTGGACTACATACGGAGCAAA 59.170 45.455 0.00 0.00 0.00 3.68
270 271 2.453521 AGTGGACTACATACGGAGCAA 58.546 47.619 0.00 0.00 0.00 3.91
271 272 2.139323 AGTGGACTACATACGGAGCA 57.861 50.000 0.00 0.00 0.00 4.26
272 273 3.631227 ACTAAGTGGACTACATACGGAGC 59.369 47.826 0.00 0.00 0.00 4.70
273 274 6.286758 TCTACTAAGTGGACTACATACGGAG 58.713 44.000 0.00 0.00 0.00 4.63
274 275 6.239217 TCTACTAAGTGGACTACATACGGA 57.761 41.667 0.00 0.00 0.00 4.69
275 276 6.932356 TTCTACTAAGTGGACTACATACGG 57.068 41.667 0.00 0.00 0.00 4.02
276 277 8.380743 AGATTCTACTAAGTGGACTACATACG 57.619 38.462 0.00 0.00 0.00 3.06
277 278 9.563748 AGAGATTCTACTAAGTGGACTACATAC 57.436 37.037 0.00 0.00 0.00 2.39
279 280 9.563748 GTAGAGATTCTACTAAGTGGACTACAT 57.436 37.037 8.60 0.00 44.45 2.29
280 281 8.961294 GTAGAGATTCTACTAAGTGGACTACA 57.039 38.462 8.60 0.00 44.45 2.74
295 296 9.138596 GGGAGTATAAGTCTTTGTAGAGATTCT 57.861 37.037 0.00 0.00 0.00 2.40
296 297 9.138596 AGGGAGTATAAGTCTTTGTAGAGATTC 57.861 37.037 0.00 0.00 0.00 2.52
297 298 9.138596 GAGGGAGTATAAGTCTTTGTAGAGATT 57.861 37.037 0.00 0.00 0.00 2.40
298 299 7.726738 GGAGGGAGTATAAGTCTTTGTAGAGAT 59.273 40.741 0.00 0.00 0.00 2.75
299 300 7.061688 GGAGGGAGTATAAGTCTTTGTAGAGA 58.938 42.308 0.00 0.00 0.00 3.10
300 301 6.834451 TGGAGGGAGTATAAGTCTTTGTAGAG 59.166 42.308 0.00 0.00 0.00 2.43
301 302 6.738635 TGGAGGGAGTATAAGTCTTTGTAGA 58.261 40.000 0.00 0.00 0.00 2.59
302 303 7.604657 ATGGAGGGAGTATAAGTCTTTGTAG 57.395 40.000 0.00 0.00 0.00 2.74
303 304 7.070821 GGAATGGAGGGAGTATAAGTCTTTGTA 59.929 40.741 0.00 0.00 0.00 2.41
304 305 6.126739 GGAATGGAGGGAGTATAAGTCTTTGT 60.127 42.308 0.00 0.00 0.00 2.83
305 306 6.126768 TGGAATGGAGGGAGTATAAGTCTTTG 60.127 42.308 0.00 0.00 0.00 2.77
306 307 5.970640 TGGAATGGAGGGAGTATAAGTCTTT 59.029 40.000 0.00 0.00 0.00 2.52
307 308 5.367060 GTGGAATGGAGGGAGTATAAGTCTT 59.633 44.000 0.00 0.00 0.00 3.01
308 309 4.902448 GTGGAATGGAGGGAGTATAAGTCT 59.098 45.833 0.00 0.00 0.00 3.24
309 310 4.654262 TGTGGAATGGAGGGAGTATAAGTC 59.346 45.833 0.00 0.00 0.00 3.01
310 311 4.631234 TGTGGAATGGAGGGAGTATAAGT 58.369 43.478 0.00 0.00 0.00 2.24
311 312 5.630415 TTGTGGAATGGAGGGAGTATAAG 57.370 43.478 0.00 0.00 0.00 1.73
312 313 5.431731 ACATTGTGGAATGGAGGGAGTATAA 59.568 40.000 0.00 0.00 43.00 0.98
313 314 4.975147 ACATTGTGGAATGGAGGGAGTATA 59.025 41.667 0.00 0.00 43.00 1.47
314 315 3.788142 ACATTGTGGAATGGAGGGAGTAT 59.212 43.478 0.00 0.00 43.00 2.12
315 316 3.189606 ACATTGTGGAATGGAGGGAGTA 58.810 45.455 0.00 0.00 43.00 2.59
316 317 1.995542 ACATTGTGGAATGGAGGGAGT 59.004 47.619 0.00 0.00 43.00 3.85
317 318 2.814805 ACATTGTGGAATGGAGGGAG 57.185 50.000 0.00 0.00 43.00 4.30
318 319 3.931907 CTACATTGTGGAATGGAGGGA 57.068 47.619 0.00 0.00 44.23 4.20
322 323 3.719268 AGCACTACATTGTGGAATGGA 57.281 42.857 7.20 0.00 43.00 3.41
323 324 3.129287 GGAAGCACTACATTGTGGAATGG 59.871 47.826 7.20 0.00 43.00 3.16
324 325 4.012374 AGGAAGCACTACATTGTGGAATG 58.988 43.478 7.20 0.00 44.11 2.67
325 326 4.018960 AGAGGAAGCACTACATTGTGGAAT 60.019 41.667 7.20 0.00 38.31 3.01
326 327 3.327757 AGAGGAAGCACTACATTGTGGAA 59.672 43.478 7.20 0.00 38.31 3.53
327 328 2.906389 AGAGGAAGCACTACATTGTGGA 59.094 45.455 7.20 0.00 38.31 4.02
328 329 3.340814 AGAGGAAGCACTACATTGTGG 57.659 47.619 0.00 0.00 38.31 4.17
329 330 5.053145 GGATAGAGGAAGCACTACATTGTG 58.947 45.833 0.00 0.00 40.62 3.33
330 331 4.101741 GGGATAGAGGAAGCACTACATTGT 59.898 45.833 0.00 0.00 0.00 2.71
331 332 4.503991 GGGGATAGAGGAAGCACTACATTG 60.504 50.000 0.00 0.00 0.00 2.82
332 333 3.648545 GGGGATAGAGGAAGCACTACATT 59.351 47.826 0.00 0.00 0.00 2.71
333 334 3.243724 GGGGATAGAGGAAGCACTACAT 58.756 50.000 0.00 0.00 0.00 2.29
334 335 2.679082 GGGGATAGAGGAAGCACTACA 58.321 52.381 0.00 0.00 0.00 2.74
335 336 1.614413 CGGGGATAGAGGAAGCACTAC 59.386 57.143 0.00 0.00 0.00 2.73
336 337 1.217183 ACGGGGATAGAGGAAGCACTA 59.783 52.381 0.00 0.00 0.00 2.74
337 338 0.032017 ACGGGGATAGAGGAAGCACT 60.032 55.000 0.00 0.00 0.00 4.40
338 339 0.105039 CACGGGGATAGAGGAAGCAC 59.895 60.000 0.00 0.00 0.00 4.40
339 340 1.686325 GCACGGGGATAGAGGAAGCA 61.686 60.000 0.00 0.00 0.00 3.91
340 341 1.069935 GCACGGGGATAGAGGAAGC 59.930 63.158 0.00 0.00 0.00 3.86
341 342 1.069358 GAAGCACGGGGATAGAGGAAG 59.931 57.143 0.00 0.00 0.00 3.46
342 343 1.120530 GAAGCACGGGGATAGAGGAA 58.879 55.000 0.00 0.00 0.00 3.36
343 344 0.032515 TGAAGCACGGGGATAGAGGA 60.033 55.000 0.00 0.00 0.00 3.71
344 345 0.830648 TTGAAGCACGGGGATAGAGG 59.169 55.000 0.00 0.00 0.00 3.69
345 346 1.482593 AGTTGAAGCACGGGGATAGAG 59.517 52.381 0.00 0.00 0.00 2.43
346 347 1.568504 AGTTGAAGCACGGGGATAGA 58.431 50.000 0.00 0.00 0.00 1.98
347 348 2.403252 AAGTTGAAGCACGGGGATAG 57.597 50.000 0.00 0.00 0.00 2.08
348 349 2.039216 TCAAAGTTGAAGCACGGGGATA 59.961 45.455 0.00 0.00 33.55 2.59
349 350 1.202879 TCAAAGTTGAAGCACGGGGAT 60.203 47.619 0.00 0.00 33.55 3.85
350 351 0.181587 TCAAAGTTGAAGCACGGGGA 59.818 50.000 0.00 0.00 33.55 4.81
351 352 0.310854 GTCAAAGTTGAAGCACGGGG 59.689 55.000 0.00 0.00 39.21 5.73
352 353 0.310854 GGTCAAAGTTGAAGCACGGG 59.689 55.000 0.00 0.00 39.21 5.28
353 354 0.041312 CGGTCAAAGTTGAAGCACGG 60.041 55.000 0.00 0.00 39.21 4.94
354 355 0.655733 ACGGTCAAAGTTGAAGCACG 59.344 50.000 0.00 2.00 39.21 5.34
355 356 3.955771 TTACGGTCAAAGTTGAAGCAC 57.044 42.857 0.00 0.00 39.21 4.40
356 357 5.508200 AATTTACGGTCAAAGTTGAAGCA 57.492 34.783 0.00 0.00 39.21 3.91
357 358 7.646526 AGTTAAATTTACGGTCAAAGTTGAAGC 59.353 33.333 0.00 0.00 39.21 3.86
366 367 8.938906 GGTCTTGATAGTTAAATTTACGGTCAA 58.061 33.333 0.00 6.02 0.00 3.18
367 368 7.276218 CGGTCTTGATAGTTAAATTTACGGTCA 59.724 37.037 0.00 0.00 0.00 4.02
368 369 7.489113 TCGGTCTTGATAGTTAAATTTACGGTC 59.511 37.037 0.00 0.00 0.00 4.79
369 370 7.322664 TCGGTCTTGATAGTTAAATTTACGGT 58.677 34.615 0.00 0.00 0.00 4.83
370 371 7.760131 TCGGTCTTGATAGTTAAATTTACGG 57.240 36.000 0.00 0.00 0.00 4.02
371 372 9.632969 CAATCGGTCTTGATAGTTAAATTTACG 57.367 33.333 0.00 0.00 0.00 3.18
372 373 9.434559 GCAATCGGTCTTGATAGTTAAATTTAC 57.565 33.333 0.00 0.00 0.00 2.01
373 374 8.332464 CGCAATCGGTCTTGATAGTTAAATTTA 58.668 33.333 0.00 0.00 0.00 1.40
374 375 7.186804 CGCAATCGGTCTTGATAGTTAAATTT 58.813 34.615 0.00 0.00 0.00 1.82
375 376 6.715464 CGCAATCGGTCTTGATAGTTAAATT 58.285 36.000 0.00 0.00 0.00 1.82
376 377 6.287107 CGCAATCGGTCTTGATAGTTAAAT 57.713 37.500 0.00 0.00 0.00 1.40
377 378 5.712217 CGCAATCGGTCTTGATAGTTAAA 57.288 39.130 0.00 0.00 0.00 1.52
393 394 2.872337 CTTTTGCTCCCGCCGCAATC 62.872 60.000 5.33 0.00 45.67 2.67
394 395 2.988684 TTTTGCTCCCGCCGCAAT 60.989 55.556 5.33 0.00 45.67 3.56
395 396 3.669344 CTTTTGCTCCCGCCGCAA 61.669 61.111 0.00 0.00 44.83 4.85
396 397 4.887932 TATAACTTTTGCTCCCGCCGCA 62.888 50.000 0.00 0.00 35.22 5.69
397 398 1.654023 ATAACTTTTGCTCCCGCCGC 61.654 55.000 0.00 0.00 34.43 6.53
398 399 1.658994 TATAACTTTTGCTCCCGCCG 58.341 50.000 0.00 0.00 34.43 6.46
399 400 3.211045 TGATATAACTTTTGCTCCCGCC 58.789 45.455 0.00 0.00 34.43 6.13
400 401 3.877508 ACTGATATAACTTTTGCTCCCGC 59.122 43.478 0.00 0.00 0.00 6.13
401 402 5.116180 TCACTGATATAACTTTTGCTCCCG 58.884 41.667 0.00 0.00 0.00 5.14
402 403 7.573968 ATTCACTGATATAACTTTTGCTCCC 57.426 36.000 0.00 0.00 0.00 4.30
403 404 7.852945 CGAATTCACTGATATAACTTTTGCTCC 59.147 37.037 6.22 0.00 0.00 4.70
404 405 8.391106 ACGAATTCACTGATATAACTTTTGCTC 58.609 33.333 6.22 0.00 0.00 4.26
405 406 8.268850 ACGAATTCACTGATATAACTTTTGCT 57.731 30.769 6.22 0.00 0.00 3.91
410 411 9.961265 TCGAATACGAATTCACTGATATAACTT 57.039 29.630 6.22 0.00 45.74 2.66
446 447 8.732531 CGGTGGGAGAAAAAGTTACATAATTAA 58.267 33.333 0.00 0.00 0.00 1.40
447 448 7.148205 GCGGTGGGAGAAAAAGTTACATAATTA 60.148 37.037 0.00 0.00 0.00 1.40
448 449 6.349860 GCGGTGGGAGAAAAAGTTACATAATT 60.350 38.462 0.00 0.00 0.00 1.40
449 450 5.124936 GCGGTGGGAGAAAAAGTTACATAAT 59.875 40.000 0.00 0.00 0.00 1.28
450 451 4.456566 GCGGTGGGAGAAAAAGTTACATAA 59.543 41.667 0.00 0.00 0.00 1.90
451 452 4.004982 GCGGTGGGAGAAAAAGTTACATA 58.995 43.478 0.00 0.00 0.00 2.29
452 453 2.817844 GCGGTGGGAGAAAAAGTTACAT 59.182 45.455 0.00 0.00 0.00 2.29
453 454 2.223745 GCGGTGGGAGAAAAAGTTACA 58.776 47.619 0.00 0.00 0.00 2.41
454 455 2.223745 TGCGGTGGGAGAAAAAGTTAC 58.776 47.619 0.00 0.00 0.00 2.50
455 456 2.158726 ACTGCGGTGGGAGAAAAAGTTA 60.159 45.455 0.00 0.00 35.29 2.24
456 457 1.318576 CTGCGGTGGGAGAAAAAGTT 58.681 50.000 0.00 0.00 32.53 2.66
457 458 0.182775 ACTGCGGTGGGAGAAAAAGT 59.817 50.000 0.00 0.00 35.29 2.66
458 459 0.875059 GACTGCGGTGGGAGAAAAAG 59.125 55.000 0.80 0.00 35.29 2.27
459 460 0.882927 CGACTGCGGTGGGAGAAAAA 60.883 55.000 0.80 0.00 35.29 1.94
460 461 1.301401 CGACTGCGGTGGGAGAAAA 60.301 57.895 0.80 0.00 35.29 2.29
461 462 2.342279 CGACTGCGGTGGGAGAAA 59.658 61.111 0.80 0.00 35.29 2.52
471 472 2.870161 CGAACGAGACCGACTGCG 60.870 66.667 0.00 0.00 39.50 5.18
472 473 0.110056 TAACGAACGAGACCGACTGC 60.110 55.000 0.14 0.00 39.50 4.40
473 474 2.320805 TTAACGAACGAGACCGACTG 57.679 50.000 0.14 0.00 39.50 3.51
474 475 3.565905 ATTTAACGAACGAGACCGACT 57.434 42.857 0.14 0.00 39.50 4.18
475 476 4.635961 AAATTTAACGAACGAGACCGAC 57.364 40.909 0.14 0.00 39.50 4.79
476 477 7.250569 ACTATAAATTTAACGAACGAGACCGA 58.749 34.615 1.21 0.00 39.50 4.69
477 478 7.218773 TGACTATAAATTTAACGAACGAGACCG 59.781 37.037 1.21 0.00 42.50 4.79
478 479 8.398491 TGACTATAAATTTAACGAACGAGACC 57.602 34.615 1.21 0.00 0.00 3.85
487 488 9.469239 GGTCGAACTTTGACTATAAATTTAACG 57.531 33.333 1.21 0.00 36.58 3.18
490 491 9.079833 CGAGGTCGAACTTTGACTATAAATTTA 57.920 33.333 3.47 0.00 43.02 1.40
491 492 7.064253 CCGAGGTCGAACTTTGACTATAAATTT 59.936 37.037 3.47 0.00 43.02 1.82
492 493 6.534079 CCGAGGTCGAACTTTGACTATAAATT 59.466 38.462 3.47 0.00 43.02 1.82
493 494 6.040878 CCGAGGTCGAACTTTGACTATAAAT 58.959 40.000 3.47 0.00 43.02 1.40
494 495 5.404946 CCGAGGTCGAACTTTGACTATAAA 58.595 41.667 3.47 0.00 43.02 1.40
495 496 4.142315 CCCGAGGTCGAACTTTGACTATAA 60.142 45.833 3.47 0.00 43.02 0.98
496 497 3.379372 CCCGAGGTCGAACTTTGACTATA 59.621 47.826 3.47 0.00 43.02 1.31
497 498 2.165845 CCCGAGGTCGAACTTTGACTAT 59.834 50.000 3.47 0.00 43.02 2.12
498 499 1.542915 CCCGAGGTCGAACTTTGACTA 59.457 52.381 3.47 0.00 43.02 2.59
499 500 0.317479 CCCGAGGTCGAACTTTGACT 59.683 55.000 3.47 0.00 43.02 3.41
500 501 0.316204 TCCCGAGGTCGAACTTTGAC 59.684 55.000 3.47 0.86 43.02 3.18
501 502 1.000506 CTTCCCGAGGTCGAACTTTGA 59.999 52.381 3.47 0.00 43.02 2.69
502 503 1.429463 CTTCCCGAGGTCGAACTTTG 58.571 55.000 3.47 0.00 43.02 2.77
503 504 0.320508 GCTTCCCGAGGTCGAACTTT 60.321 55.000 3.47 0.00 43.02 2.66
504 505 1.292541 GCTTCCCGAGGTCGAACTT 59.707 57.895 3.47 0.00 43.02 2.66
505 506 2.971452 GCTTCCCGAGGTCGAACT 59.029 61.111 0.34 0.34 43.02 3.01
506 507 2.506438 CGCTTCCCGAGGTCGAAC 60.506 66.667 0.00 0.00 43.02 3.95
507 508 4.430765 GCGCTTCCCGAGGTCGAA 62.431 66.667 0.00 0.00 43.02 3.71
522 523 0.384230 CAAAATATAGTGCGCCCGCG 60.384 55.000 4.18 4.36 45.51 6.46
523 524 0.941542 TCAAAATATAGTGCGCCCGC 59.058 50.000 4.18 5.60 42.35 6.13
524 525 3.684103 TTTCAAAATATAGTGCGCCCG 57.316 42.857 4.18 0.00 0.00 6.13
525 526 4.037446 TCCATTTCAAAATATAGTGCGCCC 59.963 41.667 4.18 0.00 0.00 6.13
526 527 5.181690 TCCATTTCAAAATATAGTGCGCC 57.818 39.130 4.18 0.00 0.00 6.53
527 528 5.215160 CCTCCATTTCAAAATATAGTGCGC 58.785 41.667 0.00 0.00 0.00 6.09
528 529 5.530915 TCCCTCCATTTCAAAATATAGTGCG 59.469 40.000 0.00 0.00 0.00 5.34
529 530 6.547510 ACTCCCTCCATTTCAAAATATAGTGC 59.452 38.462 0.00 0.00 0.00 4.40
530 531 9.799106 ATACTCCCTCCATTTCAAAATATAGTG 57.201 33.333 0.00 0.00 0.00 2.74
535 536 9.640952 CCTAAATACTCCCTCCATTTCAAAATA 57.359 33.333 0.00 0.00 0.00 1.40
536 537 8.343787 TCCTAAATACTCCCTCCATTTCAAAAT 58.656 33.333 0.00 0.00 0.00 1.82
537 538 7.704727 TCCTAAATACTCCCTCCATTTCAAAA 58.295 34.615 0.00 0.00 0.00 2.44
538 539 7.278724 TCCTAAATACTCCCTCCATTTCAAA 57.721 36.000 0.00 0.00 0.00 2.69
539 540 6.901615 TCCTAAATACTCCCTCCATTTCAA 57.098 37.500 0.00 0.00 0.00 2.69
540 541 6.631766 CGTTCCTAAATACTCCCTCCATTTCA 60.632 42.308 0.00 0.00 0.00 2.69
541 542 5.758784 CGTTCCTAAATACTCCCTCCATTTC 59.241 44.000 0.00 0.00 0.00 2.17
542 543 5.397559 CCGTTCCTAAATACTCCCTCCATTT 60.398 44.000 0.00 0.00 0.00 2.32
543 544 4.102681 CCGTTCCTAAATACTCCCTCCATT 59.897 45.833 0.00 0.00 0.00 3.16
544 545 3.646637 CCGTTCCTAAATACTCCCTCCAT 59.353 47.826 0.00 0.00 0.00 3.41
545 546 3.036091 CCGTTCCTAAATACTCCCTCCA 58.964 50.000 0.00 0.00 0.00 3.86
546 547 3.303049 TCCGTTCCTAAATACTCCCTCC 58.697 50.000 0.00 0.00 0.00 4.30
547 548 3.321396 CCTCCGTTCCTAAATACTCCCTC 59.679 52.174 0.00 0.00 0.00 4.30
548 549 3.306613 CCTCCGTTCCTAAATACTCCCT 58.693 50.000 0.00 0.00 0.00 4.20
549 550 2.367894 CCCTCCGTTCCTAAATACTCCC 59.632 54.545 0.00 0.00 0.00 4.30
550 551 3.303049 TCCCTCCGTTCCTAAATACTCC 58.697 50.000 0.00 0.00 0.00 3.85
551 552 3.959449 ACTCCCTCCGTTCCTAAATACTC 59.041 47.826 0.00 0.00 0.00 2.59
552 553 3.991683 ACTCCCTCCGTTCCTAAATACT 58.008 45.455 0.00 0.00 0.00 2.12
553 554 5.136105 TCTACTCCCTCCGTTCCTAAATAC 58.864 45.833 0.00 0.00 0.00 1.89
554 555 5.393068 TCTACTCCCTCCGTTCCTAAATA 57.607 43.478 0.00 0.00 0.00 1.40
555 556 4.261411 TCTACTCCCTCCGTTCCTAAAT 57.739 45.455 0.00 0.00 0.00 1.40
556 557 3.744940 TCTACTCCCTCCGTTCCTAAA 57.255 47.619 0.00 0.00 0.00 1.85
557 558 3.967467 ATCTACTCCCTCCGTTCCTAA 57.033 47.619 0.00 0.00 0.00 2.69
558 559 3.967467 AATCTACTCCCTCCGTTCCTA 57.033 47.619 0.00 0.00 0.00 2.94
559 560 2.850695 AATCTACTCCCTCCGTTCCT 57.149 50.000 0.00 0.00 0.00 3.36
560 561 3.830121 TCTAATCTACTCCCTCCGTTCC 58.170 50.000 0.00 0.00 0.00 3.62
561 562 4.888823 ACTTCTAATCTACTCCCTCCGTTC 59.111 45.833 0.00 0.00 0.00 3.95
562 563 4.869451 ACTTCTAATCTACTCCCTCCGTT 58.131 43.478 0.00 0.00 0.00 4.44
563 564 4.523168 ACTTCTAATCTACTCCCTCCGT 57.477 45.455 0.00 0.00 0.00 4.69
564 565 5.855740 AAACTTCTAATCTACTCCCTCCG 57.144 43.478 0.00 0.00 0.00 4.63
599 600 4.536765 AGGTCATCTCCAACACTGTTTTT 58.463 39.130 0.00 0.00 0.00 1.94
633 634 0.905337 AGAGGAAGTGGAGAACCCGG 60.905 60.000 0.00 0.00 37.93 5.73
634 635 0.977395 AAGAGGAAGTGGAGAACCCG 59.023 55.000 0.00 0.00 37.93 5.28
635 636 1.279558 GGAAGAGGAAGTGGAGAACCC 59.720 57.143 0.00 0.00 34.81 4.11
636 637 2.235155 GAGGAAGAGGAAGTGGAGAACC 59.765 54.545 0.00 0.00 0.00 3.62
637 638 2.235155 GGAGGAAGAGGAAGTGGAGAAC 59.765 54.545 0.00 0.00 0.00 3.01
638 639 2.541466 GGAGGAAGAGGAAGTGGAGAA 58.459 52.381 0.00 0.00 0.00 2.87
670 677 1.000396 AGGACCTGGAATGCTTGGC 60.000 57.895 0.00 0.00 0.00 4.52
688 695 4.265856 TCCTTAGGTCTAGATGCTTCCA 57.734 45.455 0.00 0.00 0.00 3.53
689 696 5.816955 AATCCTTAGGTCTAGATGCTTCC 57.183 43.478 0.00 0.00 0.00 3.46
708 715 0.392461 TGGACTGGGCTGCGTAAATC 60.392 55.000 0.00 0.00 0.00 2.17
728 735 2.743928 CCAGAAGACCCTGCACGC 60.744 66.667 0.00 0.00 32.97 5.34
732 739 2.045536 CTGGCCAGAAGACCCTGC 60.046 66.667 29.88 0.00 32.97 4.85
733 740 2.045536 GCTGGCCAGAAGACCCTG 60.046 66.667 37.21 7.81 0.00 4.45
789 796 1.168714 GCCAGATTTTGAAGCCGAGT 58.831 50.000 0.00 0.00 0.00 4.18
876 883 4.514816 TGAAAATTGTGAGCTCGTTGATCA 59.485 37.500 9.64 4.93 38.94 2.92
891 898 1.135575 GCTGCCTCGGAGTGAAAATTG 60.136 52.381 4.02 0.00 0.00 2.32
1104 1125 2.032681 ACCGGCAAGAAGGACAGC 59.967 61.111 0.00 0.00 0.00 4.40
1209 1230 1.521681 CCGCCGGTTCAGAATCCTC 60.522 63.158 1.90 0.00 0.00 3.71
1405 1426 3.123804 CGAAGCTATTGTTATCACGGCT 58.876 45.455 0.00 0.00 0.00 5.52
1722 1743 8.388853 GCAAGCTTAATAGAACCTGTTACTAAC 58.611 37.037 0.00 0.00 0.00 2.34
1734 1755 3.932710 CACAGTCGGCAAGCTTAATAGAA 59.067 43.478 0.00 0.00 0.00 2.10
1794 1815 6.248433 ACCACAATTTTCACAGGTATCATCT 58.752 36.000 0.00 0.00 0.00 2.90
1816 1837 0.819582 CTGCCATCACCATTGGAACC 59.180 55.000 10.37 0.00 36.26 3.62
1823 1844 1.219773 ATCTCCACTGCCATCACCAT 58.780 50.000 0.00 0.00 0.00 3.55
1826 1847 1.741706 CACAATCTCCACTGCCATCAC 59.258 52.381 0.00 0.00 0.00 3.06
1832 1853 1.198637 GAAGCACACAATCTCCACTGC 59.801 52.381 0.00 0.00 0.00 4.40
1856 1877 4.022849 AGCTTTTAGCATCTGACAAACCAC 60.023 41.667 1.09 0.00 45.56 4.16
1869 1890 4.396166 GCTATCAACTCCAAGCTTTTAGCA 59.604 41.667 0.00 0.00 45.56 3.49
1904 1925 6.422776 AAAGAAGTAGATGCAAACATACCG 57.577 37.500 0.00 0.00 36.35 4.02
1962 1983 8.966868 TGATGATACAGTGTAAGAGACATAACA 58.033 33.333 7.16 2.44 41.14 2.41
1963 1984 9.973450 ATGATGATACAGTGTAAGAGACATAAC 57.027 33.333 7.16 0.29 41.14 1.89
1978 1999 9.285770 CTTCACAAATGTCAAATGATGATACAG 57.714 33.333 0.00 0.00 40.97 2.74
2027 2048 6.658849 AGTCCATATAATGTACAGGTGCAAA 58.341 36.000 0.33 0.00 0.00 3.68
2087 2108 8.507249 AGCACAAAGTATGATTTCAGAAGTAAC 58.493 33.333 0.00 0.00 0.00 2.50
2113 2134 4.399004 ACATTAAACCTGTGCTTGCAAA 57.601 36.364 0.00 0.00 0.00 3.68
2114 2135 4.399004 AACATTAAACCTGTGCTTGCAA 57.601 36.364 0.00 0.00 0.00 4.08
2218 2239 6.153680 CACTTTTACCCCCTTGCATAACATAA 59.846 38.462 0.00 0.00 0.00 1.90
2325 2371 7.118390 GTGTGATGCTACTGAAGTAAATGAAGT 59.882 37.037 0.00 0.00 0.00 3.01
2372 2418 7.833682 TGCAAATGGGTAAGAATATCTCAAGAA 59.166 33.333 0.00 0.00 0.00 2.52
2522 2568 2.941453 TCTCGAGAACAGGTGTATGC 57.059 50.000 14.01 0.00 0.00 3.14
2549 2595 5.307976 AGCATATACCTGACAAAGCTGGATA 59.692 40.000 0.00 0.00 0.00 2.59
2663 2709 1.289160 CTTCCTTCAGTCCCCATCCA 58.711 55.000 0.00 0.00 0.00 3.41
2715 2764 6.254281 TGATTTCAAGTACCTTAAGCTTGC 57.746 37.500 9.86 0.80 39.36 4.01
2895 2944 9.570488 GATCGTTCTAGTTACTACAAATCAACT 57.430 33.333 0.00 0.00 35.50 3.16
2902 2951 8.517056 TCAACATGATCGTTCTAGTTACTACAA 58.483 33.333 0.00 0.00 0.00 2.41
2903 2952 8.047413 TCAACATGATCGTTCTAGTTACTACA 57.953 34.615 0.00 0.00 0.00 2.74
2904 2953 7.166142 GCTCAACATGATCGTTCTAGTTACTAC 59.834 40.741 0.00 0.00 0.00 2.73
3128 6434 1.202114 GATCTCCTCCTGATGCGCTAG 59.798 57.143 9.73 4.32 0.00 3.42
3288 6594 0.321671 ACCATGTCACTCAAGACCCG 59.678 55.000 0.00 0.00 37.73 5.28
3348 6654 8.781196 CAAGATAAACTGACATGCATATAGCTT 58.219 33.333 0.00 0.00 45.94 3.74
3458 6766 0.605319 TTCGGAGCTCCAAAACGCAT 60.605 50.000 31.67 0.00 35.14 4.73
3537 6845 6.751888 GGAATTTACATCTTCATTTTGGACCG 59.248 38.462 0.00 0.00 0.00 4.79
3633 6942 7.735326 AGGAGGTACAGAACAATAGTTGTAT 57.265 36.000 0.00 0.00 44.59 2.29
3646 6956 5.428253 GCACAAAATCATAGGAGGTACAGA 58.572 41.667 0.00 0.00 0.00 3.41
3837 7149 6.713762 ATCCTTTCGATGCATGGATTTAAA 57.286 33.333 12.50 3.05 34.21 1.52
3840 7152 5.603170 AAATCCTTTCGATGCATGGATTT 57.397 34.783 24.76 24.76 46.46 2.17
3867 7179 6.785076 TGACAAACTCCATTTTATCCCACTA 58.215 36.000 0.00 0.00 0.00 2.74
3997 7311 4.597004 TGTACTGCTAGGTACTGTAGCTT 58.403 43.478 22.86 8.78 42.94 3.74
4148 7469 2.743126 CTTGCAGCTCACTCCTGGCA 62.743 60.000 0.00 0.00 0.00 4.92
4210 7531 4.669842 TTGCTGCTGACGCTCGCT 62.670 61.111 0.00 0.00 35.37 4.93
4211 7532 4.144681 CTTGCTGCTGACGCTCGC 62.145 66.667 0.00 0.00 36.97 5.03
4212 7533 4.144681 GCTTGCTGCTGACGCTCG 62.145 66.667 0.00 0.00 38.95 5.03
4213 7534 3.024782 CTGCTTGCTGCTGACGCTC 62.025 63.158 0.00 0.00 42.27 5.03
4214 7535 3.048475 CTGCTTGCTGCTGACGCT 61.048 61.111 0.00 0.00 42.27 5.07
4215 7536 4.755614 GCTGCTTGCTGCTGACGC 62.756 66.667 15.47 0.00 42.27 5.19
4216 7537 4.440987 CGCTGCTTGCTGCTGACG 62.441 66.667 19.16 10.48 42.27 4.35
4217 7538 4.099170 CCGCTGCTTGCTGCTGAC 62.099 66.667 19.16 0.00 42.27 3.51
4218 7539 3.238755 TACCGCTGCTTGCTGCTGA 62.239 57.895 18.73 4.85 42.27 4.26
4219 7540 2.743538 TACCGCTGCTTGCTGCTG 60.744 61.111 19.16 15.82 43.37 4.41
4220 7541 1.888436 TACTACCGCTGCTTGCTGCT 61.888 55.000 19.16 7.07 43.37 4.24
4221 7542 1.447838 TACTACCGCTGCTTGCTGC 60.448 57.895 13.27 13.27 40.11 5.25
4222 7543 1.413767 CGTACTACCGCTGCTTGCTG 61.414 60.000 0.00 0.00 40.11 4.41
4223 7544 1.153823 CGTACTACCGCTGCTTGCT 60.154 57.895 0.00 0.00 40.11 3.91
4224 7545 3.384927 CGTACTACCGCTGCTTGC 58.615 61.111 0.00 0.00 38.57 4.01
4232 7553 1.874019 CAGCTGCTGCGTACTACCG 60.874 63.158 17.73 0.00 45.42 4.02
4233 7554 4.094684 CAGCTGCTGCGTACTACC 57.905 61.111 17.73 0.00 45.42 3.18
4273 7594 4.767255 GACACCTCGCCCCTGCTG 62.767 72.222 0.00 0.00 34.43 4.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.