Multiple sequence alignment - TraesCS4D01G097500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G097500 chr4D 100.000 2279 0 0 1 2279 74349523 74347245 0.000000e+00 4209.0
1 TraesCS4D01G097500 chr4B 94.816 1061 36 11 637 1684 106785930 106784876 0.000000e+00 1637.0
2 TraesCS4D01G097500 chr4B 80.126 317 43 15 297 605 465007240 465007544 3.810000e-53 219.0
3 TraesCS4D01G097500 chr4A 91.182 1168 61 18 637 1767 513349072 513350234 0.000000e+00 1548.0
4 TraesCS4D01G097500 chr4A 89.796 245 24 1 1 245 673939038 673939281 1.700000e-81 313.0
5 TraesCS4D01G097500 chr4A 86.452 155 18 2 427 581 112776086 112776237 1.400000e-37 167.0
6 TraesCS4D01G097500 chr4A 90.769 65 5 1 1781 1845 513350218 513350281 4.030000e-13 86.1
7 TraesCS4D01G097500 chr3A 92.213 244 19 0 2 245 453431065 453431308 1.680000e-91 346.0
8 TraesCS4D01G097500 chr6A 91.489 235 20 0 1 235 525252491 525252725 7.850000e-85 324.0
9 TraesCS4D01G097500 chr5A 92.093 215 16 1 1 215 217931319 217931106 3.680000e-78 302.0
10 TraesCS4D01G097500 chr5A 88.353 249 12 5 1 245 538425867 538425632 1.330000e-72 283.0
11 TraesCS4D01G097500 chr5A 87.550 249 14 5 1 245 538381996 538381761 2.880000e-69 272.0
12 TraesCS4D01G097500 chr5A 88.889 189 12 4 1844 2030 71460208 71460389 8.190000e-55 224.0
13 TraesCS4D01G097500 chr5A 89.143 175 19 0 1 175 162140854 162141028 3.810000e-53 219.0
14 TraesCS4D01G097500 chr5A 82.906 234 8 6 1 230 538380982 538380777 5.000000e-42 182.0
15 TraesCS4D01G097500 chr2B 92.265 181 11 3 1843 2021 103794328 103794149 1.040000e-63 254.0
16 TraesCS4D01G097500 chr2B 78.551 345 51 15 286 617 97393921 97393587 2.970000e-49 206.0
17 TraesCS4D01G097500 chr2B 87.166 187 15 3 1844 2028 425895422 425895601 1.070000e-48 204.0
18 TraesCS4D01G097500 chr2A 90.909 187 13 4 1844 2028 405553443 405553627 4.860000e-62 248.0
19 TraesCS4D01G097500 chr2A 89.714 175 18 0 1 175 423460300 423460474 8.190000e-55 224.0
20 TraesCS4D01G097500 chr2A 81.068 206 30 7 418 617 62368538 62368336 3.030000e-34 156.0
21 TraesCS4D01G097500 chr6B 90.426 188 15 2 1844 2028 90146300 90146113 6.290000e-61 244.0
22 TraesCS4D01G097500 chr6D 90.374 187 14 4 1844 2028 114627704 114627520 2.260000e-60 243.0
23 TraesCS4D01G097500 chr6D 90.270 185 12 2 1844 2027 377820511 377820332 1.050000e-58 237.0
24 TraesCS4D01G097500 chr1B 90.052 191 10 3 1846 2035 333623607 333623789 2.930000e-59 239.0
25 TraesCS4D01G097500 chr1B 82.979 188 23 7 418 597 667971995 667971809 6.520000e-36 161.0
26 TraesCS4D01G097500 chr3D 89.840 187 9 4 1844 2027 486691458 486691637 4.900000e-57 231.0
27 TraesCS4D01G097500 chr7D 88.462 182 17 3 1844 2024 45584022 45584200 1.370000e-52 217.0
28 TraesCS4D01G097500 chr7D 81.633 196 26 8 419 607 524549002 524549194 1.090000e-33 154.0
29 TraesCS4D01G097500 chr3B 84.653 202 21 8 424 617 694179261 694179460 2.310000e-45 193.0
30 TraesCS4D01G097500 chr3B 80.500 200 32 6 417 613 715064742 715064937 1.820000e-31 147.0
31 TraesCS4D01G097500 chr1D 84.746 177 21 3 427 597 462387573 462387749 3.010000e-39 172.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G097500 chr4D 74347245 74349523 2278 True 4209.00 4209 100.0000 1 2279 1 chr4D.!!$R1 2278
1 TraesCS4D01G097500 chr4B 106784876 106785930 1054 True 1637.00 1637 94.8160 637 1684 1 chr4B.!!$R1 1047
2 TraesCS4D01G097500 chr4A 513349072 513350281 1209 False 817.05 1548 90.9755 637 1845 2 chr4A.!!$F3 1208
3 TraesCS4D01G097500 chr5A 538380777 538381996 1219 True 227.00 272 85.2280 1 245 2 chr5A.!!$R3 244

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
635 1208 0.037232 GAGACAACCAGGAACCGAGG 60.037 60.0 0.0 0.0 0.0 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2227 2864 0.034756 CACACACCCTCCACAATCGA 59.965 55.0 0.0 0.0 0.0 3.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 6.536582 ACGTGTGATCTCCTTCATATTTCTTG 59.463 38.462 0.00 0.00 0.00 3.02
36 37 7.278646 CGTGTGATCTCCTTCATATTTCTTGAA 59.721 37.037 0.00 0.00 0.00 2.69
111 112 2.230266 GCCTTTCTGTTTATTTCCCGCA 59.770 45.455 0.00 0.00 0.00 5.69
115 116 4.712122 TTCTGTTTATTTCCCGCAATCC 57.288 40.909 0.00 0.00 0.00 3.01
116 117 3.963129 TCTGTTTATTTCCCGCAATCCT 58.037 40.909 0.00 0.00 0.00 3.24
120 121 7.284074 TCTGTTTATTTCCCGCAATCCTAATA 58.716 34.615 0.00 0.00 0.00 0.98
140 141 9.319143 CCTAATATTTAGTTCCACTTCTGACTG 57.681 37.037 0.00 0.00 0.00 3.51
141 142 9.319143 CTAATATTTAGTTCCACTTCTGACTGG 57.681 37.037 0.00 0.00 0.00 4.00
149 150 2.418471 CCACTTCTGACTGGATGAGAGC 60.418 54.545 0.00 0.00 0.00 4.09
151 152 2.760092 ACTTCTGACTGGATGAGAGCTC 59.240 50.000 5.27 5.27 0.00 4.09
153 154 2.098614 TCTGACTGGATGAGAGCTCAC 58.901 52.381 17.77 10.80 43.11 3.51
154 155 1.136695 CTGACTGGATGAGAGCTCACC 59.863 57.143 17.77 13.51 43.11 4.02
155 156 1.189752 GACTGGATGAGAGCTCACCA 58.810 55.000 17.77 17.09 43.11 4.17
156 157 1.761784 GACTGGATGAGAGCTCACCAT 59.238 52.381 17.77 17.86 43.11 3.55
157 158 1.761784 ACTGGATGAGAGCTCACCATC 59.238 52.381 27.42 27.42 43.11 3.51
160 161 2.996249 GATGAGAGCTCACCATCCAA 57.004 50.000 26.11 4.03 43.11 3.53
161 162 2.836262 GATGAGAGCTCACCATCCAAG 58.164 52.381 26.11 0.00 43.11 3.61
162 163 0.907486 TGAGAGCTCACCATCCAAGG 59.093 55.000 17.77 0.00 34.14 3.61
163 164 0.908198 GAGAGCTCACCATCCAAGGT 59.092 55.000 17.77 0.00 44.48 3.50
253 641 9.101325 TCTAACCTCATTCTTTATGGTATAGGG 57.899 37.037 0.00 0.00 31.75 3.53
254 642 7.947782 AACCTCATTCTTTATGGTATAGGGA 57.052 36.000 0.00 0.00 31.75 4.20
265 653 5.763876 ATGGTATAGGGATTAGTTGAGCC 57.236 43.478 0.00 0.00 0.00 4.70
266 654 3.908103 TGGTATAGGGATTAGTTGAGCCC 59.092 47.826 0.00 0.00 41.00 5.19
267 655 3.056035 GGTATAGGGATTAGTTGAGCCCG 60.056 52.174 0.00 0.00 45.40 6.13
268 656 2.464796 TAGGGATTAGTTGAGCCCGA 57.535 50.000 0.00 0.00 45.40 5.14
269 657 1.580059 AGGGATTAGTTGAGCCCGAA 58.420 50.000 0.00 0.00 45.40 4.30
270 658 1.913419 AGGGATTAGTTGAGCCCGAAA 59.087 47.619 0.00 0.00 45.40 3.46
271 659 2.014857 GGGATTAGTTGAGCCCGAAAC 58.985 52.381 0.00 0.00 0.00 2.78
272 660 2.617021 GGGATTAGTTGAGCCCGAAACA 60.617 50.000 0.00 0.00 0.00 2.83
273 661 3.078837 GGATTAGTTGAGCCCGAAACAA 58.921 45.455 0.00 0.00 0.00 2.83
274 662 3.127030 GGATTAGTTGAGCCCGAAACAAG 59.873 47.826 0.00 0.00 0.00 3.16
276 664 0.472471 AGTTGAGCCCGAAACAAGGA 59.528 50.000 0.00 0.00 0.00 3.36
277 665 0.875059 GTTGAGCCCGAAACAAGGAG 59.125 55.000 0.00 0.00 0.00 3.69
278 666 0.762418 TTGAGCCCGAAACAAGGAGA 59.238 50.000 0.00 0.00 0.00 3.71
280 668 1.339055 TGAGCCCGAAACAAGGAGATG 60.339 52.381 0.00 0.00 0.00 2.90
281 669 0.984230 AGCCCGAAACAAGGAGATGA 59.016 50.000 0.00 0.00 0.00 2.92
282 670 1.351017 AGCCCGAAACAAGGAGATGAA 59.649 47.619 0.00 0.00 0.00 2.57
285 673 3.412386 CCCGAAACAAGGAGATGAACTT 58.588 45.455 0.00 0.00 0.00 2.66
286 674 3.821033 CCCGAAACAAGGAGATGAACTTT 59.179 43.478 0.00 0.00 0.00 2.66
288 676 5.215160 CCGAAACAAGGAGATGAACTTTTG 58.785 41.667 0.00 0.00 33.11 2.44
290 678 5.221048 CGAAACAAGGAGATGAACTTTTGGT 60.221 40.000 0.00 0.00 32.00 3.67
291 679 5.774498 AACAAGGAGATGAACTTTTGGTC 57.226 39.130 0.00 0.00 36.49 4.02
293 681 6.187727 ACAAGGAGATGAACTTTTGGTCTA 57.812 37.500 0.00 0.00 36.99 2.59
294 682 6.784031 ACAAGGAGATGAACTTTTGGTCTAT 58.216 36.000 0.00 0.00 36.99 1.98
295 683 6.656693 ACAAGGAGATGAACTTTTGGTCTATG 59.343 38.462 0.00 0.00 36.99 2.23
297 685 6.648192 AGGAGATGAACTTTTGGTCTATGAG 58.352 40.000 0.00 0.00 36.99 2.90
298 686 6.214412 AGGAGATGAACTTTTGGTCTATGAGT 59.786 38.462 0.00 0.00 36.99 3.41
299 687 6.314896 GGAGATGAACTTTTGGTCTATGAGTG 59.685 42.308 0.00 0.00 36.99 3.51
300 688 6.773638 AGATGAACTTTTGGTCTATGAGTGT 58.226 36.000 0.00 0.00 36.99 3.55
301 689 7.907389 AGATGAACTTTTGGTCTATGAGTGTA 58.093 34.615 0.00 0.00 36.99 2.90
308 881 9.712305 ACTTTTGGTCTATGAGTGTATATATGC 57.288 33.333 0.00 0.00 0.00 3.14
309 882 9.155975 CTTTTGGTCTATGAGTGTATATATGCC 57.844 37.037 0.00 0.00 0.00 4.40
310 883 8.435931 TTTGGTCTATGAGTGTATATATGCCT 57.564 34.615 0.00 0.00 0.00 4.75
311 884 8.435931 TTGGTCTATGAGTGTATATATGCCTT 57.564 34.615 0.00 0.00 0.00 4.35
385 958 9.927668 ATTTTTGAAATAAACTTGATCGTCCAT 57.072 25.926 0.00 0.00 0.00 3.41
386 959 9.757227 TTTTTGAAATAAACTTGATCGTCCATT 57.243 25.926 0.00 0.00 0.00 3.16
387 960 8.741101 TTTGAAATAAACTTGATCGTCCATTG 57.259 30.769 0.00 0.00 0.00 2.82
388 961 7.447374 TGAAATAAACTTGATCGTCCATTGT 57.553 32.000 0.00 0.00 0.00 2.71
389 962 8.554835 TGAAATAAACTTGATCGTCCATTGTA 57.445 30.769 0.00 0.00 0.00 2.41
390 963 8.447833 TGAAATAAACTTGATCGTCCATTGTAC 58.552 33.333 0.00 0.00 0.00 2.90
391 964 8.561738 AAATAAACTTGATCGTCCATTGTACT 57.438 30.769 0.00 0.00 0.00 2.73
392 965 8.561738 AATAAACTTGATCGTCCATTGTACTT 57.438 30.769 0.00 0.00 0.00 2.24
393 966 5.862924 AACTTGATCGTCCATTGTACTTG 57.137 39.130 0.00 0.00 0.00 3.16
394 967 4.894784 ACTTGATCGTCCATTGTACTTGT 58.105 39.130 0.00 0.00 0.00 3.16
395 968 4.690748 ACTTGATCGTCCATTGTACTTGTG 59.309 41.667 0.00 0.00 0.00 3.33
396 969 4.529109 TGATCGTCCATTGTACTTGTGA 57.471 40.909 0.00 0.00 0.00 3.58
397 970 4.888917 TGATCGTCCATTGTACTTGTGAA 58.111 39.130 0.00 0.00 0.00 3.18
398 971 5.487433 TGATCGTCCATTGTACTTGTGAAT 58.513 37.500 0.00 0.00 0.00 2.57
399 972 5.937540 TGATCGTCCATTGTACTTGTGAATT 59.062 36.000 0.00 0.00 0.00 2.17
400 973 6.429692 TGATCGTCCATTGTACTTGTGAATTT 59.570 34.615 0.00 0.00 0.00 1.82
401 974 6.627395 TCGTCCATTGTACTTGTGAATTTT 57.373 33.333 0.00 0.00 0.00 1.82
402 975 7.033530 TCGTCCATTGTACTTGTGAATTTTT 57.966 32.000 0.00 0.00 0.00 1.94
423 996 5.360649 TTTTTCCACGATTTTTCCCCTTT 57.639 34.783 0.00 0.00 0.00 3.11
424 997 4.329462 TTTCCACGATTTTTCCCCTTTG 57.671 40.909 0.00 0.00 0.00 2.77
425 998 3.231207 TCCACGATTTTTCCCCTTTGA 57.769 42.857 0.00 0.00 0.00 2.69
426 999 2.888414 TCCACGATTTTTCCCCTTTGAC 59.112 45.455 0.00 0.00 0.00 3.18
427 1000 2.890945 CCACGATTTTTCCCCTTTGACT 59.109 45.455 0.00 0.00 0.00 3.41
428 1001 3.320826 CCACGATTTTTCCCCTTTGACTT 59.679 43.478 0.00 0.00 0.00 3.01
429 1002 4.546570 CACGATTTTTCCCCTTTGACTTC 58.453 43.478 0.00 0.00 0.00 3.01
430 1003 4.278419 CACGATTTTTCCCCTTTGACTTCT 59.722 41.667 0.00 0.00 0.00 2.85
431 1004 4.893524 ACGATTTTTCCCCTTTGACTTCTT 59.106 37.500 0.00 0.00 0.00 2.52
432 1005 5.009710 ACGATTTTTCCCCTTTGACTTCTTC 59.990 40.000 0.00 0.00 0.00 2.87
433 1006 5.241728 CGATTTTTCCCCTTTGACTTCTTCT 59.758 40.000 0.00 0.00 0.00 2.85
434 1007 6.430000 CGATTTTTCCCCTTTGACTTCTTCTA 59.570 38.462 0.00 0.00 0.00 2.10
435 1008 7.040686 CGATTTTTCCCCTTTGACTTCTTCTAA 60.041 37.037 0.00 0.00 0.00 2.10
436 1009 7.964666 TTTTTCCCCTTTGACTTCTTCTAAA 57.035 32.000 0.00 0.00 0.00 1.85
437 1010 7.964666 TTTTCCCCTTTGACTTCTTCTAAAA 57.035 32.000 0.00 0.00 0.00 1.52
438 1011 7.964666 TTTCCCCTTTGACTTCTTCTAAAAA 57.035 32.000 0.00 0.00 0.00 1.94
439 1012 8.547481 TTTCCCCTTTGACTTCTTCTAAAAAT 57.453 30.769 0.00 0.00 0.00 1.82
440 1013 9.649316 TTTCCCCTTTGACTTCTTCTAAAAATA 57.351 29.630 0.00 0.00 0.00 1.40
441 1014 9.649316 TTCCCCTTTGACTTCTTCTAAAAATAA 57.351 29.630 0.00 0.00 0.00 1.40
442 1015 9.649316 TCCCCTTTGACTTCTTCTAAAAATAAA 57.351 29.630 0.00 0.00 0.00 1.40
463 1036 8.980143 ATAAATTTTCGGTCAAAATACTGTGG 57.020 30.769 0.00 0.00 42.86 4.17
464 1037 6.642707 AATTTTCGGTCAAAATACTGTGGA 57.357 33.333 0.00 0.00 42.86 4.02
465 1038 6.834168 ATTTTCGGTCAAAATACTGTGGAT 57.166 33.333 0.00 0.00 42.02 3.41
466 1039 7.931578 ATTTTCGGTCAAAATACTGTGGATA 57.068 32.000 0.00 0.00 42.02 2.59
467 1040 6.978343 TTTCGGTCAAAATACTGTGGATAG 57.022 37.500 0.00 0.00 0.00 2.08
468 1041 5.670792 TCGGTCAAAATACTGTGGATAGT 57.329 39.130 0.00 0.00 34.71 2.12
469 1042 5.416083 TCGGTCAAAATACTGTGGATAGTG 58.584 41.667 0.00 0.00 32.19 2.74
470 1043 5.186215 TCGGTCAAAATACTGTGGATAGTGA 59.814 40.000 0.00 0.00 32.19 3.41
471 1044 5.291128 CGGTCAAAATACTGTGGATAGTGAC 59.709 44.000 0.00 0.00 32.19 3.67
472 1045 5.585047 GGTCAAAATACTGTGGATAGTGACC 59.415 44.000 3.47 3.47 34.02 4.02
473 1046 6.407202 GTCAAAATACTGTGGATAGTGACCT 58.593 40.000 0.00 0.00 32.19 3.85
474 1047 7.364408 GGTCAAAATACTGTGGATAGTGACCTA 60.364 40.741 10.91 0.00 36.54 3.08
475 1048 8.204836 GTCAAAATACTGTGGATAGTGACCTAT 58.795 37.037 0.00 0.00 36.57 2.57
476 1049 9.429109 TCAAAATACTGTGGATAGTGACCTATA 57.571 33.333 0.00 0.00 33.95 1.31
480 1053 6.672266 ACTGTGGATAGTGACCTATAATGG 57.328 41.667 0.00 0.00 33.95 3.16
481 1054 6.143915 ACTGTGGATAGTGACCTATAATGGT 58.856 40.000 0.00 0.00 44.10 3.55
482 1055 7.302948 ACTGTGGATAGTGACCTATAATGGTA 58.697 38.462 0.00 0.00 41.00 3.25
483 1056 7.787904 ACTGTGGATAGTGACCTATAATGGTAA 59.212 37.037 0.00 0.00 41.00 2.85
484 1057 8.555896 TGTGGATAGTGACCTATAATGGTAAA 57.444 34.615 0.00 0.00 41.00 2.01
485 1058 9.166222 TGTGGATAGTGACCTATAATGGTAAAT 57.834 33.333 0.00 0.00 41.00 1.40
509 1082 2.202295 TTTTGCCTTGAAGTCAACGC 57.798 45.000 7.75 7.75 38.03 4.84
510 1083 1.388547 TTTGCCTTGAAGTCAACGCT 58.611 45.000 13.67 0.00 38.25 5.07
511 1084 0.662619 TTGCCTTGAAGTCAACGCTG 59.337 50.000 13.67 0.00 38.25 5.18
512 1085 1.165907 TGCCTTGAAGTCAACGCTGG 61.166 55.000 13.67 5.08 38.25 4.85
513 1086 1.166531 GCCTTGAAGTCAACGCTGGT 61.167 55.000 7.51 0.00 35.80 4.00
514 1087 1.308998 CCTTGAAGTCAACGCTGGTT 58.691 50.000 0.00 0.00 36.63 3.67
515 1088 1.676006 CCTTGAAGTCAACGCTGGTTT 59.324 47.619 0.00 0.00 32.98 3.27
516 1089 2.099098 CCTTGAAGTCAACGCTGGTTTT 59.901 45.455 0.00 0.00 32.98 2.43
517 1090 3.428862 CCTTGAAGTCAACGCTGGTTTTT 60.429 43.478 0.00 0.00 32.98 1.94
518 1091 4.201970 CCTTGAAGTCAACGCTGGTTTTTA 60.202 41.667 0.00 0.00 32.98 1.52
519 1092 4.966965 TGAAGTCAACGCTGGTTTTTAA 57.033 36.364 0.00 0.00 32.98 1.52
520 1093 5.508200 TGAAGTCAACGCTGGTTTTTAAT 57.492 34.783 0.00 0.00 32.98 1.40
521 1094 5.897050 TGAAGTCAACGCTGGTTTTTAATT 58.103 33.333 0.00 0.00 32.98 1.40
522 1095 5.974751 TGAAGTCAACGCTGGTTTTTAATTC 59.025 36.000 0.00 0.00 32.98 2.17
523 1096 5.767816 AGTCAACGCTGGTTTTTAATTCT 57.232 34.783 0.00 0.00 32.98 2.40
524 1097 6.144078 AGTCAACGCTGGTTTTTAATTCTT 57.856 33.333 0.00 0.00 32.98 2.52
525 1098 5.977129 AGTCAACGCTGGTTTTTAATTCTTG 59.023 36.000 0.00 0.00 32.98 3.02
526 1099 5.974751 GTCAACGCTGGTTTTTAATTCTTGA 59.025 36.000 0.00 0.00 32.98 3.02
527 1100 6.474102 GTCAACGCTGGTTTTTAATTCTTGAA 59.526 34.615 0.00 0.00 32.98 2.69
528 1101 7.009723 GTCAACGCTGGTTTTTAATTCTTGAAA 59.990 33.333 0.00 0.00 32.98 2.69
529 1102 7.545965 TCAACGCTGGTTTTTAATTCTTGAAAA 59.454 29.630 0.00 0.00 32.98 2.29
530 1103 8.334632 CAACGCTGGTTTTTAATTCTTGAAAAT 58.665 29.630 0.00 0.00 32.98 1.82
531 1104 8.432110 ACGCTGGTTTTTAATTCTTGAAAATT 57.568 26.923 0.00 0.00 31.99 1.82
532 1105 8.888716 ACGCTGGTTTTTAATTCTTGAAAATTT 58.111 25.926 0.00 0.00 31.99 1.82
559 1132 9.726438 ATATACTAGTGCAAAAGAAAGTCAAGT 57.274 29.630 5.39 0.00 0.00 3.16
560 1133 6.759497 ACTAGTGCAAAAGAAAGTCAAGTT 57.241 33.333 0.00 0.00 0.00 2.66
561 1134 7.158099 ACTAGTGCAAAAGAAAGTCAAGTTT 57.842 32.000 0.00 0.00 0.00 2.66
562 1135 8.276252 ACTAGTGCAAAAGAAAGTCAAGTTTA 57.724 30.769 0.00 0.00 0.00 2.01
563 1136 8.903820 ACTAGTGCAAAAGAAAGTCAAGTTTAT 58.096 29.630 0.00 0.00 0.00 1.40
564 1137 9.736023 CTAGTGCAAAAGAAAGTCAAGTTTATT 57.264 29.630 0.00 0.00 0.00 1.40
565 1138 8.634475 AGTGCAAAAGAAAGTCAAGTTTATTC 57.366 30.769 0.00 0.00 0.00 1.75
566 1139 8.250332 AGTGCAAAAGAAAGTCAAGTTTATTCA 58.750 29.630 0.00 0.00 0.00 2.57
567 1140 8.321005 GTGCAAAAGAAAGTCAAGTTTATTCAC 58.679 33.333 0.00 0.00 0.00 3.18
568 1141 8.031864 TGCAAAAGAAAGTCAAGTTTATTCACA 58.968 29.630 0.00 0.00 0.00 3.58
569 1142 8.868916 GCAAAAGAAAGTCAAGTTTATTCACAA 58.131 29.630 0.00 0.00 0.00 3.33
630 1203 4.537135 TCATGTAGAGACAACCAGGAAC 57.463 45.455 0.00 0.00 39.59 3.62
631 1204 3.260884 TCATGTAGAGACAACCAGGAACC 59.739 47.826 0.00 0.00 39.59 3.62
632 1205 1.616865 TGTAGAGACAACCAGGAACCG 59.383 52.381 0.00 0.00 30.68 4.44
633 1206 1.891150 GTAGAGACAACCAGGAACCGA 59.109 52.381 0.00 0.00 0.00 4.69
634 1207 0.969894 AGAGACAACCAGGAACCGAG 59.030 55.000 0.00 0.00 0.00 4.63
635 1208 0.037232 GAGACAACCAGGAACCGAGG 60.037 60.000 0.00 0.00 0.00 4.63
648 1221 3.080647 CCGAGGGGTATTTCAGCAC 57.919 57.895 0.00 0.00 0.00 4.40
685 1259 9.703892 AGAACTAGCTTATTATAGAATGCACAG 57.296 33.333 0.00 0.00 0.00 3.66
707 1281 0.108615 AACTCGCCACCATTCTCTCG 60.109 55.000 0.00 0.00 0.00 4.04
738 1332 0.544120 TCCATTTTGGCCACCTTCCC 60.544 55.000 3.88 0.00 37.47 3.97
883 1481 0.329596 AGGCAACAAGGTGAGGATCC 59.670 55.000 2.48 2.48 41.41 3.36
1168 1771 4.241555 GGATCCCATGCGTCGGCT 62.242 66.667 0.00 0.00 40.82 5.52
1209 1812 3.869272 GCGTTCTGGCTCGCCATG 61.869 66.667 11.59 6.12 46.15 3.66
1329 1950 9.926751 CATTGTGATGTTAGTATCAAATCTGTC 57.073 33.333 0.00 0.00 38.69 3.51
1643 2276 2.296190 GGACCCCAACATCTGAACAAAC 59.704 50.000 0.00 0.00 0.00 2.93
1706 2343 6.879188 ACACACAAAAATACAAGTTTTCCG 57.121 33.333 0.00 0.00 31.29 4.30
1769 2406 8.918202 TGGAGAACATATTATATGGTTGTTCC 57.082 34.615 15.60 15.81 44.48 3.62
1770 2407 7.942341 TGGAGAACATATTATATGGTTGTTCCC 59.058 37.037 15.60 13.45 44.48 3.97
1771 2408 7.942341 GGAGAACATATTATATGGTTGTTCCCA 59.058 37.037 15.60 0.00 44.48 4.37
1772 2409 9.520515 GAGAACATATTATATGGTTGTTCCCAT 57.479 33.333 15.60 0.00 44.48 4.00
1773 2410 9.881773 AGAACATATTATATGGTTGTTCCCATT 57.118 29.630 15.60 0.00 42.70 3.16
1805 2442 7.999679 ACATATTATATGGTTGTGCATATGCC 58.000 34.615 24.54 15.85 41.18 4.40
1808 2445 1.024271 ATGGTTGTGCATATGCCGAC 58.976 50.000 24.54 21.89 41.18 4.79
1839 2476 2.851263 ACCGCTGTGATCAAAAGGTA 57.149 45.000 10.18 0.00 0.00 3.08
1845 2482 5.106157 CCGCTGTGATCAAAAGGTAAAATCT 60.106 40.000 0.00 0.00 0.00 2.40
1846 2483 5.796935 CGCTGTGATCAAAAGGTAAAATCTG 59.203 40.000 0.00 0.00 0.00 2.90
1847 2484 6.568462 CGCTGTGATCAAAAGGTAAAATCTGT 60.568 38.462 0.00 0.00 0.00 3.41
1848 2485 6.803807 GCTGTGATCAAAAGGTAAAATCTGTC 59.196 38.462 0.00 0.00 0.00 3.51
1849 2486 7.308830 GCTGTGATCAAAAGGTAAAATCTGTCT 60.309 37.037 0.00 0.00 0.00 3.41
1850 2487 9.219603 CTGTGATCAAAAGGTAAAATCTGTCTA 57.780 33.333 0.00 0.00 0.00 2.59
1851 2488 9.219603 TGTGATCAAAAGGTAAAATCTGTCTAG 57.780 33.333 0.00 0.00 0.00 2.43
1852 2489 8.669243 GTGATCAAAAGGTAAAATCTGTCTAGG 58.331 37.037 0.00 0.00 0.00 3.02
1853 2490 8.602424 TGATCAAAAGGTAAAATCTGTCTAGGA 58.398 33.333 0.00 0.00 0.00 2.94
1854 2491 8.794335 ATCAAAAGGTAAAATCTGTCTAGGAC 57.206 34.615 0.00 0.00 0.00 3.85
1855 2492 7.741785 TCAAAAGGTAAAATCTGTCTAGGACA 58.258 34.615 0.43 0.43 40.50 4.02
1856 2493 7.660208 TCAAAAGGTAAAATCTGTCTAGGACAC 59.340 37.037 0.00 0.00 37.67 3.67
1857 2494 6.681729 AAGGTAAAATCTGTCTAGGACACA 57.318 37.500 0.00 0.00 37.67 3.72
1858 2495 6.875972 AGGTAAAATCTGTCTAGGACACAT 57.124 37.500 0.00 0.00 37.67 3.21
1859 2496 6.879400 AGGTAAAATCTGTCTAGGACACATC 58.121 40.000 0.00 0.00 37.67 3.06
1860 2497 6.670027 AGGTAAAATCTGTCTAGGACACATCT 59.330 38.462 0.00 0.00 37.67 2.90
1861 2498 7.839705 AGGTAAAATCTGTCTAGGACACATCTA 59.160 37.037 0.00 0.00 37.67 1.98
1862 2499 8.138712 GGTAAAATCTGTCTAGGACACATCTAG 58.861 40.741 0.00 0.00 37.67 2.43
1863 2500 7.962995 AAAATCTGTCTAGGACACATCTAGA 57.037 36.000 0.00 0.00 37.67 2.43
1864 2501 8.546083 AAAATCTGTCTAGGACACATCTAGAT 57.454 34.615 0.00 0.00 43.25 1.98
1865 2502 7.523293 AATCTGTCTAGGACACATCTAGATG 57.477 40.000 27.63 27.63 43.25 2.90
1914 2551 8.954950 CATCTAAACTGATGTCCACTCTATTT 57.045 34.615 0.00 0.00 39.05 1.40
1915 2552 8.824781 CATCTAAACTGATGTCCACTCTATTTG 58.175 37.037 0.00 0.00 39.05 2.32
1916 2553 7.907389 TCTAAACTGATGTCCACTCTATTTGT 58.093 34.615 0.00 0.00 0.00 2.83
1917 2554 6.808008 AAACTGATGTCCACTCTATTTGTG 57.192 37.500 0.00 0.00 35.39 3.33
1930 2567 8.955061 CACTCTATTTGTGGTCTATTGTTTTG 57.045 34.615 0.00 0.00 0.00 2.44
1931 2568 8.567948 CACTCTATTTGTGGTCTATTGTTTTGT 58.432 33.333 0.00 0.00 0.00 2.83
1932 2569 8.784043 ACTCTATTTGTGGTCTATTGTTTTGTC 58.216 33.333 0.00 0.00 0.00 3.18
1933 2570 8.106247 TCTATTTGTGGTCTATTGTTTTGTCC 57.894 34.615 0.00 0.00 0.00 4.02
1934 2571 6.976934 ATTTGTGGTCTATTGTTTTGTCCT 57.023 33.333 0.00 0.00 0.00 3.85
1935 2572 9.226606 CTATTTGTGGTCTATTGTTTTGTCCTA 57.773 33.333 0.00 0.00 0.00 2.94
1936 2573 7.504924 TTTGTGGTCTATTGTTTTGTCCTAG 57.495 36.000 0.00 0.00 0.00 3.02
1937 2574 6.182507 TGTGGTCTATTGTTTTGTCCTAGT 57.817 37.500 0.00 0.00 0.00 2.57
1938 2575 6.597562 TGTGGTCTATTGTTTTGTCCTAGTT 58.402 36.000 0.00 0.00 0.00 2.24
1939 2576 7.057894 TGTGGTCTATTGTTTTGTCCTAGTTT 58.942 34.615 0.00 0.00 0.00 2.66
1940 2577 7.558444 TGTGGTCTATTGTTTTGTCCTAGTTTT 59.442 33.333 0.00 0.00 0.00 2.43
1941 2578 8.410912 GTGGTCTATTGTTTTGTCCTAGTTTTT 58.589 33.333 0.00 0.00 0.00 1.94
1961 2598 4.698583 TTTTTGCTTTTTGTTGCTGCAT 57.301 31.818 1.84 0.00 33.50 3.96
1962 2599 4.698583 TTTTGCTTTTTGTTGCTGCATT 57.301 31.818 1.84 0.00 33.50 3.56
1963 2600 5.808042 TTTTGCTTTTTGTTGCTGCATTA 57.192 30.435 1.84 0.00 33.50 1.90
1964 2601 6.374565 TTTTGCTTTTTGTTGCTGCATTAT 57.625 29.167 1.84 0.00 33.50 1.28
1965 2602 7.488187 TTTTGCTTTTTGTTGCTGCATTATA 57.512 28.000 1.84 0.00 33.50 0.98
1966 2603 7.670009 TTTGCTTTTTGTTGCTGCATTATAT 57.330 28.000 1.84 0.00 33.50 0.86
1967 2604 8.768957 TTTGCTTTTTGTTGCTGCATTATATA 57.231 26.923 1.84 0.00 33.50 0.86
1968 2605 8.945481 TTGCTTTTTGTTGCTGCATTATATAT 57.055 26.923 1.84 0.00 33.50 0.86
1969 2606 8.945481 TGCTTTTTGTTGCTGCATTATATATT 57.055 26.923 1.84 0.00 0.00 1.28
1970 2607 9.381033 TGCTTTTTGTTGCTGCATTATATATTT 57.619 25.926 1.84 0.00 0.00 1.40
1975 2612 9.926158 TTTGTTGCTGCATTATATATTTATGGG 57.074 29.630 1.84 0.00 0.00 4.00
1976 2613 8.876303 TGTTGCTGCATTATATATTTATGGGA 57.124 30.769 1.84 0.00 0.00 4.37
1977 2614 8.959548 TGTTGCTGCATTATATATTTATGGGAG 58.040 33.333 1.84 0.00 0.00 4.30
1978 2615 7.572523 TGCTGCATTATATATTTATGGGAGC 57.427 36.000 0.00 0.00 0.00 4.70
1979 2616 7.348815 TGCTGCATTATATATTTATGGGAGCT 58.651 34.615 0.00 0.00 0.00 4.09
1980 2617 7.835682 TGCTGCATTATATATTTATGGGAGCTT 59.164 33.333 0.00 0.00 0.00 3.74
1981 2618 9.342308 GCTGCATTATATATTTATGGGAGCTTA 57.658 33.333 0.00 0.00 0.00 3.09
1990 2627 5.692115 TTTATGGGAGCTTAGATGTGACA 57.308 39.130 0.00 0.00 0.00 3.58
1991 2628 5.894298 TTATGGGAGCTTAGATGTGACAT 57.106 39.130 0.00 0.00 0.00 3.06
1992 2629 3.827008 TGGGAGCTTAGATGTGACATC 57.173 47.619 17.46 17.46 0.00 3.06
1993 2630 2.435805 TGGGAGCTTAGATGTGACATCC 59.564 50.000 21.05 6.28 0.00 3.51
1994 2631 2.703007 GGGAGCTTAGATGTGACATCCT 59.297 50.000 21.05 11.37 0.00 3.24
1995 2632 3.135530 GGGAGCTTAGATGTGACATCCTT 59.864 47.826 21.05 7.22 0.00 3.36
1996 2633 4.345257 GGGAGCTTAGATGTGACATCCTTA 59.655 45.833 21.05 6.22 0.00 2.69
1997 2634 5.163301 GGGAGCTTAGATGTGACATCCTTAA 60.163 44.000 21.05 13.11 0.00 1.85
1998 2635 6.349300 GGAGCTTAGATGTGACATCCTTAAA 58.651 40.000 21.05 10.18 0.00 1.52
1999 2636 6.823689 GGAGCTTAGATGTGACATCCTTAAAA 59.176 38.462 21.05 8.00 0.00 1.52
2000 2637 7.336931 GGAGCTTAGATGTGACATCCTTAAAAA 59.663 37.037 21.05 6.46 0.00 1.94
2053 2690 9.801873 AAATAATTCACTATTTTCCCAATGACG 57.198 29.630 0.00 0.00 29.05 4.35
2054 2691 5.835113 ATTCACTATTTTCCCAATGACGG 57.165 39.130 0.00 0.00 0.00 4.79
2055 2692 4.295141 TCACTATTTTCCCAATGACGGT 57.705 40.909 0.00 0.00 0.00 4.83
2056 2693 4.006989 TCACTATTTTCCCAATGACGGTG 58.993 43.478 0.00 0.00 0.00 4.94
2057 2694 4.006989 CACTATTTTCCCAATGACGGTGA 58.993 43.478 0.00 0.00 0.00 4.02
2058 2695 4.457603 CACTATTTTCCCAATGACGGTGAA 59.542 41.667 0.00 0.00 0.00 3.18
2059 2696 5.048364 CACTATTTTCCCAATGACGGTGAAA 60.048 40.000 0.00 0.00 0.00 2.69
2060 2697 4.519540 ATTTTCCCAATGACGGTGAAAG 57.480 40.909 0.00 0.00 31.30 2.62
2061 2698 2.940994 TTCCCAATGACGGTGAAAGA 57.059 45.000 0.00 0.00 0.00 2.52
2062 2699 2.472695 TCCCAATGACGGTGAAAGAG 57.527 50.000 0.00 0.00 0.00 2.85
2063 2700 0.804989 CCCAATGACGGTGAAAGAGC 59.195 55.000 0.00 0.00 0.00 4.09
2064 2701 1.611673 CCCAATGACGGTGAAAGAGCT 60.612 52.381 0.00 0.00 0.00 4.09
2065 2702 2.354704 CCCAATGACGGTGAAAGAGCTA 60.355 50.000 0.00 0.00 0.00 3.32
2066 2703 3.535561 CCAATGACGGTGAAAGAGCTAT 58.464 45.455 0.00 0.00 0.00 2.97
2067 2704 3.310774 CCAATGACGGTGAAAGAGCTATG 59.689 47.826 0.00 0.00 0.00 2.23
2068 2705 2.672961 TGACGGTGAAAGAGCTATGG 57.327 50.000 0.00 0.00 0.00 2.74
2069 2706 1.899814 TGACGGTGAAAGAGCTATGGT 59.100 47.619 0.00 0.00 0.00 3.55
2070 2707 2.094182 TGACGGTGAAAGAGCTATGGTC 60.094 50.000 0.00 0.00 0.00 4.02
2071 2708 1.899814 ACGGTGAAAGAGCTATGGTCA 59.100 47.619 0.00 0.00 31.89 4.02
2072 2709 2.501723 ACGGTGAAAGAGCTATGGTCAT 59.498 45.455 0.00 0.00 31.89 3.06
2073 2710 3.126831 CGGTGAAAGAGCTATGGTCATC 58.873 50.000 0.00 0.00 31.89 2.92
2074 2711 3.430790 CGGTGAAAGAGCTATGGTCATCA 60.431 47.826 6.42 1.42 31.89 3.07
2075 2712 4.712476 GGTGAAAGAGCTATGGTCATCAT 58.288 43.478 1.64 0.00 39.78 2.45
2076 2713 4.514441 GGTGAAAGAGCTATGGTCATCATG 59.486 45.833 1.64 0.00 37.30 3.07
2077 2714 5.121811 GTGAAAGAGCTATGGTCATCATGT 58.878 41.667 0.00 0.00 37.30 3.21
2078 2715 5.587844 GTGAAAGAGCTATGGTCATCATGTT 59.412 40.000 0.00 0.00 37.30 2.71
2079 2716 5.587443 TGAAAGAGCTATGGTCATCATGTTG 59.413 40.000 0.00 0.00 37.30 3.33
2080 2717 4.767578 AGAGCTATGGTCATCATGTTGT 57.232 40.909 3.76 0.00 37.30 3.32
2081 2718 5.108187 AGAGCTATGGTCATCATGTTGTT 57.892 39.130 3.76 0.00 37.30 2.83
2082 2719 4.880120 AGAGCTATGGTCATCATGTTGTTG 59.120 41.667 3.76 0.00 37.30 3.33
2083 2720 4.847198 AGCTATGGTCATCATGTTGTTGA 58.153 39.130 3.76 0.00 37.30 3.18
2084 2721 5.255687 AGCTATGGTCATCATGTTGTTGAA 58.744 37.500 3.76 0.00 37.30 2.69
2085 2722 5.711506 AGCTATGGTCATCATGTTGTTGAAA 59.288 36.000 3.76 0.00 37.30 2.69
2086 2723 6.379133 AGCTATGGTCATCATGTTGTTGAAAT 59.621 34.615 3.76 0.35 37.30 2.17
2087 2724 7.037438 GCTATGGTCATCATGTTGTTGAAATT 58.963 34.615 3.76 0.00 37.30 1.82
2088 2725 8.190122 GCTATGGTCATCATGTTGTTGAAATTA 58.810 33.333 3.76 0.00 37.30 1.40
2092 2729 9.460019 TGGTCATCATGTTGTTGAAATTATAGA 57.540 29.630 3.76 0.00 29.01 1.98
2101 2738 9.921637 TGTTGTTGAAATTATAGAACATTTCCC 57.078 29.630 5.54 0.00 38.23 3.97
2104 2741 8.250332 TGTTGAAATTATAGAACATTTCCCTGC 58.750 33.333 5.54 0.00 38.23 4.85
2105 2742 7.953005 TGAAATTATAGAACATTTCCCTGCA 57.047 32.000 5.54 0.00 38.23 4.41
2106 2743 8.359875 TGAAATTATAGAACATTTCCCTGCAA 57.640 30.769 5.54 0.00 38.23 4.08
2107 2744 8.811017 TGAAATTATAGAACATTTCCCTGCAAA 58.189 29.630 5.54 0.00 38.23 3.68
2108 2745 9.651913 GAAATTATAGAACATTTCCCTGCAAAA 57.348 29.630 0.00 0.00 34.55 2.44
2110 2747 9.657419 AATTATAGAACATTTCCCTGCAAAAAG 57.343 29.630 0.00 0.00 0.00 2.27
2111 2748 6.916360 ATAGAACATTTCCCTGCAAAAAGA 57.084 33.333 0.00 0.00 0.00 2.52
2112 2749 5.612725 AGAACATTTCCCTGCAAAAAGAA 57.387 34.783 0.00 0.00 0.00 2.52
2113 2750 5.988287 AGAACATTTCCCTGCAAAAAGAAA 58.012 33.333 0.00 0.00 33.13 2.52
2114 2751 6.413892 AGAACATTTCCCTGCAAAAAGAAAA 58.586 32.000 4.76 0.00 32.41 2.29
2115 2752 6.883756 AGAACATTTCCCTGCAAAAAGAAAAA 59.116 30.769 4.76 0.00 32.41 1.94
2136 2773 6.382919 AAAAAGTATAGAACCTGTAGCCCA 57.617 37.500 0.00 0.00 0.00 5.36
2137 2774 6.576778 AAAAGTATAGAACCTGTAGCCCAT 57.423 37.500 0.00 0.00 0.00 4.00
2138 2775 6.576778 AAAGTATAGAACCTGTAGCCCATT 57.423 37.500 0.00 0.00 0.00 3.16
2139 2776 6.576778 AAGTATAGAACCTGTAGCCCATTT 57.423 37.500 0.00 0.00 0.00 2.32
2140 2777 6.576778 AGTATAGAACCTGTAGCCCATTTT 57.423 37.500 0.00 0.00 0.00 1.82
2141 2778 7.685849 AGTATAGAACCTGTAGCCCATTTTA 57.314 36.000 0.00 0.00 0.00 1.52
2142 2779 8.276453 AGTATAGAACCTGTAGCCCATTTTAT 57.724 34.615 0.00 0.00 0.00 1.40
2143 2780 8.376270 AGTATAGAACCTGTAGCCCATTTTATC 58.624 37.037 0.00 0.00 0.00 1.75
2144 2781 5.450818 AGAACCTGTAGCCCATTTTATCA 57.549 39.130 0.00 0.00 0.00 2.15
2145 2782 6.018433 AGAACCTGTAGCCCATTTTATCAT 57.982 37.500 0.00 0.00 0.00 2.45
2146 2783 6.435164 AGAACCTGTAGCCCATTTTATCATT 58.565 36.000 0.00 0.00 0.00 2.57
2147 2784 6.897413 AGAACCTGTAGCCCATTTTATCATTT 59.103 34.615 0.00 0.00 0.00 2.32
2148 2785 7.400052 AGAACCTGTAGCCCATTTTATCATTTT 59.600 33.333 0.00 0.00 0.00 1.82
2149 2786 7.112452 ACCTGTAGCCCATTTTATCATTTTC 57.888 36.000 0.00 0.00 0.00 2.29
2150 2787 6.667414 ACCTGTAGCCCATTTTATCATTTTCA 59.333 34.615 0.00 0.00 0.00 2.69
2151 2788 7.180051 ACCTGTAGCCCATTTTATCATTTTCAA 59.820 33.333 0.00 0.00 0.00 2.69
2152 2789 8.206189 CCTGTAGCCCATTTTATCATTTTCAAT 58.794 33.333 0.00 0.00 0.00 2.57
2175 2812 9.374838 CAATAATTCCTCAAAAATTCCAAGAGG 57.625 33.333 0.00 0.00 45.64 3.69
2176 2813 8.670521 ATAATTCCTCAAAAATTCCAAGAGGT 57.329 30.769 12.90 1.82 44.79 3.85
2177 2814 7.379059 AATTCCTCAAAAATTCCAAGAGGTT 57.621 32.000 12.90 2.93 44.79 3.50
2178 2815 6.405278 TTCCTCAAAAATTCCAAGAGGTTC 57.595 37.500 12.90 0.00 44.79 3.62
2179 2816 5.454062 TCCTCAAAAATTCCAAGAGGTTCA 58.546 37.500 12.90 0.00 44.79 3.18
2180 2817 6.077322 TCCTCAAAAATTCCAAGAGGTTCAT 58.923 36.000 12.90 0.00 44.79 2.57
2181 2818 7.237982 TCCTCAAAAATTCCAAGAGGTTCATA 58.762 34.615 12.90 0.00 44.79 2.15
2182 2819 7.895429 TCCTCAAAAATTCCAAGAGGTTCATAT 59.105 33.333 12.90 0.00 44.79 1.78
2183 2820 7.977853 CCTCAAAAATTCCAAGAGGTTCATATG 59.022 37.037 0.00 0.00 40.71 1.78
2184 2821 7.839907 TCAAAAATTCCAAGAGGTTCATATGG 58.160 34.615 2.13 0.00 35.89 2.74
2185 2822 7.454380 TCAAAAATTCCAAGAGGTTCATATGGT 59.546 33.333 2.13 0.00 35.89 3.55
2186 2823 7.410120 AAAATTCCAAGAGGTTCATATGGTC 57.590 36.000 2.13 0.00 35.89 4.02
2187 2824 4.503714 TTCCAAGAGGTTCATATGGTCC 57.496 45.455 2.13 5.98 35.89 4.46
2188 2825 3.459828 TCCAAGAGGTTCATATGGTCCA 58.540 45.455 15.66 0.00 35.89 4.02
2189 2826 4.047166 TCCAAGAGGTTCATATGGTCCAT 58.953 43.478 9.88 9.88 35.89 3.41
2190 2827 5.223655 TCCAAGAGGTTCATATGGTCCATA 58.776 41.667 14.08 14.08 35.89 2.74
2191 2828 5.669904 TCCAAGAGGTTCATATGGTCCATAA 59.330 40.000 15.64 0.00 35.89 1.90
2192 2829 6.332635 TCCAAGAGGTTCATATGGTCCATAAT 59.667 38.462 15.64 2.31 35.89 1.28
2193 2830 6.432162 CCAAGAGGTTCATATGGTCCATAATG 59.568 42.308 15.64 13.39 29.74 1.90
2194 2831 5.564550 AGAGGTTCATATGGTCCATAATGC 58.435 41.667 15.64 6.61 29.74 3.56
2195 2832 5.073554 AGAGGTTCATATGGTCCATAATGCA 59.926 40.000 15.64 3.24 29.74 3.96
2196 2833 5.072741 AGGTTCATATGGTCCATAATGCAC 58.927 41.667 15.64 13.23 29.74 4.57
2197 2834 4.083324 GGTTCATATGGTCCATAATGCACG 60.083 45.833 15.64 1.51 29.74 5.34
2198 2835 4.615588 TCATATGGTCCATAATGCACGA 57.384 40.909 15.64 3.64 29.74 4.35
2199 2836 4.967036 TCATATGGTCCATAATGCACGAA 58.033 39.130 15.64 0.00 29.74 3.85
2200 2837 5.559770 TCATATGGTCCATAATGCACGAAT 58.440 37.500 15.64 0.00 29.74 3.34
2201 2838 6.706295 TCATATGGTCCATAATGCACGAATA 58.294 36.000 15.64 0.00 29.74 1.75
2202 2839 7.164803 TCATATGGTCCATAATGCACGAATAA 58.835 34.615 15.64 0.00 29.74 1.40
2203 2840 7.663493 TCATATGGTCCATAATGCACGAATAAA 59.337 33.333 15.64 0.00 29.74 1.40
2204 2841 6.707440 ATGGTCCATAATGCACGAATAAAA 57.293 33.333 1.24 0.00 0.00 1.52
2205 2842 6.516739 TGGTCCATAATGCACGAATAAAAA 57.483 33.333 0.00 0.00 0.00 1.94
2206 2843 6.559810 TGGTCCATAATGCACGAATAAAAAG 58.440 36.000 0.00 0.00 0.00 2.27
2207 2844 6.151985 TGGTCCATAATGCACGAATAAAAAGT 59.848 34.615 0.00 0.00 0.00 2.66
2208 2845 7.337184 TGGTCCATAATGCACGAATAAAAAGTA 59.663 33.333 0.00 0.00 0.00 2.24
2209 2846 8.349983 GGTCCATAATGCACGAATAAAAAGTAT 58.650 33.333 0.00 0.00 0.00 2.12
2210 2847 9.169468 GTCCATAATGCACGAATAAAAAGTATG 57.831 33.333 0.00 0.00 0.00 2.39
2211 2848 9.114952 TCCATAATGCACGAATAAAAAGTATGA 57.885 29.630 0.00 0.00 0.00 2.15
2212 2849 9.729023 CCATAATGCACGAATAAAAAGTATGAA 57.271 29.630 0.00 0.00 0.00 2.57
2216 2853 9.691362 AATGCACGAATAAAAAGTATGAAAGTT 57.309 25.926 0.00 0.00 0.00 2.66
2217 2854 9.691362 ATGCACGAATAAAAAGTATGAAAGTTT 57.309 25.926 0.00 0.00 31.80 2.66
2226 2863 7.520451 AAAAGTATGAAAGTTTAGTCCCACC 57.480 36.000 0.00 0.00 30.26 4.61
2227 2864 6.449830 AAGTATGAAAGTTTAGTCCCACCT 57.550 37.500 0.00 0.00 0.00 4.00
2228 2865 6.051179 AGTATGAAAGTTTAGTCCCACCTC 57.949 41.667 0.00 0.00 0.00 3.85
2229 2866 3.396260 TGAAAGTTTAGTCCCACCTCG 57.604 47.619 0.00 0.00 0.00 4.63
2230 2867 2.967201 TGAAAGTTTAGTCCCACCTCGA 59.033 45.455 0.00 0.00 0.00 4.04
2231 2868 3.581332 TGAAAGTTTAGTCCCACCTCGAT 59.419 43.478 0.00 0.00 0.00 3.59
2232 2869 4.041198 TGAAAGTTTAGTCCCACCTCGATT 59.959 41.667 0.00 0.00 0.00 3.34
2233 2870 3.611766 AGTTTAGTCCCACCTCGATTG 57.388 47.619 0.00 0.00 0.00 2.67
2234 2871 2.904434 AGTTTAGTCCCACCTCGATTGT 59.096 45.455 0.00 0.00 0.00 2.71
2235 2872 3.000727 GTTTAGTCCCACCTCGATTGTG 58.999 50.000 7.96 7.96 0.00 3.33
2242 2879 4.941609 CCTCGATTGTGGAGGGTG 57.058 61.111 0.00 0.00 45.97 4.61
2243 2880 1.983224 CCTCGATTGTGGAGGGTGT 59.017 57.895 0.00 0.00 45.97 4.16
2244 2881 0.391661 CCTCGATTGTGGAGGGTGTG 60.392 60.000 0.00 0.00 45.97 3.82
2245 2882 0.321671 CTCGATTGTGGAGGGTGTGT 59.678 55.000 0.00 0.00 0.00 3.72
2246 2883 0.034756 TCGATTGTGGAGGGTGTGTG 59.965 55.000 0.00 0.00 0.00 3.82
2247 2884 0.034756 CGATTGTGGAGGGTGTGTGA 59.965 55.000 0.00 0.00 0.00 3.58
2248 2885 1.542328 CGATTGTGGAGGGTGTGTGAA 60.542 52.381 0.00 0.00 0.00 3.18
2249 2886 2.154462 GATTGTGGAGGGTGTGTGAAG 58.846 52.381 0.00 0.00 0.00 3.02
2250 2887 1.208706 TTGTGGAGGGTGTGTGAAGA 58.791 50.000 0.00 0.00 0.00 2.87
2251 2888 1.434188 TGTGGAGGGTGTGTGAAGAT 58.566 50.000 0.00 0.00 0.00 2.40
2252 2889 1.072173 TGTGGAGGGTGTGTGAAGATG 59.928 52.381 0.00 0.00 0.00 2.90
2253 2890 1.347707 GTGGAGGGTGTGTGAAGATGA 59.652 52.381 0.00 0.00 0.00 2.92
2254 2891 1.347707 TGGAGGGTGTGTGAAGATGAC 59.652 52.381 0.00 0.00 0.00 3.06
2255 2892 1.625818 GGAGGGTGTGTGAAGATGACT 59.374 52.381 0.00 0.00 0.00 3.41
2256 2893 2.354203 GGAGGGTGTGTGAAGATGACTC 60.354 54.545 0.00 0.00 0.00 3.36
2257 2894 2.300152 GAGGGTGTGTGAAGATGACTCA 59.700 50.000 0.00 0.00 0.00 3.41
2258 2895 2.909006 AGGGTGTGTGAAGATGACTCAT 59.091 45.455 0.00 0.00 0.00 2.90
2259 2896 4.096681 AGGGTGTGTGAAGATGACTCATA 58.903 43.478 0.00 0.00 0.00 2.15
2260 2897 4.081420 AGGGTGTGTGAAGATGACTCATAC 60.081 45.833 0.00 0.00 0.00 2.39
2261 2898 4.322725 GGGTGTGTGAAGATGACTCATACA 60.323 45.833 0.00 0.00 34.11 2.29
2262 2899 5.423015 GGTGTGTGAAGATGACTCATACAT 58.577 41.667 5.83 0.00 37.69 2.29
2263 2900 5.292834 GGTGTGTGAAGATGACTCATACATG 59.707 44.000 5.83 0.00 37.69 3.21
2264 2901 6.101997 GTGTGTGAAGATGACTCATACATGA 58.898 40.000 0.00 0.00 37.69 3.07
2274 2911 1.131638 TCATACATGAGTGCCCCTCC 58.868 55.000 0.00 0.00 39.65 4.30
2275 2912 1.135094 CATACATGAGTGCCCCTCCT 58.865 55.000 0.00 0.00 39.65 3.69
2276 2913 1.071385 CATACATGAGTGCCCCTCCTC 59.929 57.143 0.00 0.00 39.65 3.71
2277 2914 0.691078 TACATGAGTGCCCCTCCTCC 60.691 60.000 0.00 0.00 39.65 4.30
2278 2915 2.765807 ATGAGTGCCCCTCCTCCG 60.766 66.667 0.00 0.00 39.65 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 6.045318 AGAAATATGAAGGAGATCACACGTG 58.955 40.000 15.48 15.48 30.82 4.49
10 11 6.758416 TCAAGAAATATGAAGGAGATCACACG 59.242 38.462 0.00 0.00 30.82 4.49
34 35 6.987404 GTGGGAACATTAGAGGTATCTTCTTC 59.013 42.308 0.00 0.00 46.14 2.87
36 37 6.206042 AGTGGGAACATTAGAGGTATCTTCT 58.794 40.000 0.00 0.00 46.14 2.85
141 142 2.485124 CCTTGGATGGTGAGCTCTCATC 60.485 54.545 27.44 27.44 42.18 2.92
161 162 3.519601 GAGAATCAGAAAGCAGGGCACC 61.520 54.545 0.00 0.00 43.47 5.01
162 163 1.742268 GAGAATCAGAAAGCAGGGCAC 59.258 52.381 0.00 0.00 33.17 5.01
163 164 1.632409 AGAGAATCAGAAAGCAGGGCA 59.368 47.619 0.00 0.00 37.82 5.36
164 165 2.093021 AGAGAGAATCAGAAAGCAGGGC 60.093 50.000 0.00 0.00 37.82 5.19
165 166 3.910568 AGAGAGAATCAGAAAGCAGGG 57.089 47.619 0.00 0.00 37.82 4.45
230 235 7.947782 TCCCTATACCATAAAGAATGAGGTT 57.052 36.000 0.00 0.00 37.86 3.50
245 250 3.056035 CGGGCTCAACTAATCCCTATACC 60.056 52.174 0.00 0.00 36.61 2.73
246 251 3.830755 TCGGGCTCAACTAATCCCTATAC 59.169 47.826 0.00 0.00 36.61 1.47
253 641 3.127030 CCTTGTTTCGGGCTCAACTAATC 59.873 47.826 0.00 0.00 0.00 1.75
254 642 3.081804 CCTTGTTTCGGGCTCAACTAAT 58.918 45.455 0.00 0.00 0.00 1.73
260 648 0.984230 ATCTCCTTGTTTCGGGCTCA 59.016 50.000 0.00 0.00 0.00 4.26
261 649 1.066143 TCATCTCCTTGTTTCGGGCTC 60.066 52.381 0.00 0.00 0.00 4.70
263 651 1.468914 GTTCATCTCCTTGTTTCGGGC 59.531 52.381 0.00 0.00 0.00 6.13
265 653 5.215160 CAAAAGTTCATCTCCTTGTTTCGG 58.785 41.667 0.00 0.00 0.00 4.30
266 654 5.215160 CCAAAAGTTCATCTCCTTGTTTCG 58.785 41.667 0.00 0.00 0.00 3.46
267 655 6.039829 AGACCAAAAGTTCATCTCCTTGTTTC 59.960 38.462 0.00 0.00 0.00 2.78
268 656 5.893824 AGACCAAAAGTTCATCTCCTTGTTT 59.106 36.000 0.00 0.00 0.00 2.83
269 657 5.449553 AGACCAAAAGTTCATCTCCTTGTT 58.550 37.500 0.00 0.00 0.00 2.83
270 658 5.053978 AGACCAAAAGTTCATCTCCTTGT 57.946 39.130 0.00 0.00 0.00 3.16
271 659 6.881065 TCATAGACCAAAAGTTCATCTCCTTG 59.119 38.462 0.00 0.00 0.00 3.61
272 660 7.020827 TCATAGACCAAAAGTTCATCTCCTT 57.979 36.000 0.00 0.00 0.00 3.36
273 661 6.214412 ACTCATAGACCAAAAGTTCATCTCCT 59.786 38.462 0.00 0.00 0.00 3.69
274 662 6.314896 CACTCATAGACCAAAAGTTCATCTCC 59.685 42.308 0.00 0.00 0.00 3.71
276 664 6.773638 ACACTCATAGACCAAAAGTTCATCT 58.226 36.000 0.00 0.00 0.00 2.90
277 665 8.723942 ATACACTCATAGACCAAAAGTTCATC 57.276 34.615 0.00 0.00 0.00 2.92
282 670 9.712305 GCATATATACACTCATAGACCAAAAGT 57.288 33.333 0.00 0.00 0.00 2.66
285 673 8.435931 AGGCATATATACACTCATAGACCAAA 57.564 34.615 0.00 0.00 0.00 3.28
286 674 8.435931 AAGGCATATATACACTCATAGACCAA 57.564 34.615 0.00 0.00 0.00 3.67
359 932 9.927668 ATGGACGATCAAGTTTATTTCAAAAAT 57.072 25.926 0.00 0.00 0.00 1.82
360 933 9.757227 AATGGACGATCAAGTTTATTTCAAAAA 57.243 25.926 0.00 0.00 0.00 1.94
361 934 9.190858 CAATGGACGATCAAGTTTATTTCAAAA 57.809 29.630 0.00 0.00 0.00 2.44
362 935 8.356657 ACAATGGACGATCAAGTTTATTTCAAA 58.643 29.630 0.00 0.00 0.00 2.69
363 936 7.881142 ACAATGGACGATCAAGTTTATTTCAA 58.119 30.769 0.00 0.00 0.00 2.69
364 937 7.447374 ACAATGGACGATCAAGTTTATTTCA 57.553 32.000 0.00 0.00 0.00 2.69
365 938 8.665685 AGTACAATGGACGATCAAGTTTATTTC 58.334 33.333 0.00 0.00 0.00 2.17
366 939 8.561738 AGTACAATGGACGATCAAGTTTATTT 57.438 30.769 0.00 0.00 0.00 1.40
367 940 8.450964 CAAGTACAATGGACGATCAAGTTTATT 58.549 33.333 0.00 0.00 0.00 1.40
368 941 7.606456 ACAAGTACAATGGACGATCAAGTTTAT 59.394 33.333 0.00 0.00 0.00 1.40
369 942 6.932400 ACAAGTACAATGGACGATCAAGTTTA 59.068 34.615 0.00 0.00 0.00 2.01
370 943 5.763204 ACAAGTACAATGGACGATCAAGTTT 59.237 36.000 0.00 0.00 0.00 2.66
371 944 5.179368 CACAAGTACAATGGACGATCAAGTT 59.821 40.000 0.00 0.00 0.00 2.66
372 945 4.690748 CACAAGTACAATGGACGATCAAGT 59.309 41.667 0.00 0.00 0.00 3.16
373 946 4.929211 TCACAAGTACAATGGACGATCAAG 59.071 41.667 0.00 0.00 0.00 3.02
374 947 4.888917 TCACAAGTACAATGGACGATCAA 58.111 39.130 0.00 0.00 0.00 2.57
375 948 4.529109 TCACAAGTACAATGGACGATCA 57.471 40.909 0.00 0.00 0.00 2.92
376 949 6.422776 AATTCACAAGTACAATGGACGATC 57.577 37.500 0.00 0.00 0.00 3.69
377 950 6.817765 AAATTCACAAGTACAATGGACGAT 57.182 33.333 0.00 0.00 0.00 3.73
378 951 6.627395 AAAATTCACAAGTACAATGGACGA 57.373 33.333 0.00 0.00 0.00 4.20
401 974 5.104900 TCAAAGGGGAAAAATCGTGGAAAAA 60.105 36.000 0.00 0.00 0.00 1.94
402 975 4.406003 TCAAAGGGGAAAAATCGTGGAAAA 59.594 37.500 0.00 0.00 0.00 2.29
403 976 3.961408 TCAAAGGGGAAAAATCGTGGAAA 59.039 39.130 0.00 0.00 0.00 3.13
404 977 3.319689 GTCAAAGGGGAAAAATCGTGGAA 59.680 43.478 0.00 0.00 0.00 3.53
405 978 2.888414 GTCAAAGGGGAAAAATCGTGGA 59.112 45.455 0.00 0.00 0.00 4.02
406 979 2.890945 AGTCAAAGGGGAAAAATCGTGG 59.109 45.455 0.00 0.00 0.00 4.94
407 980 4.278419 AGAAGTCAAAGGGGAAAAATCGTG 59.722 41.667 0.00 0.00 0.00 4.35
408 981 4.470602 AGAAGTCAAAGGGGAAAAATCGT 58.529 39.130 0.00 0.00 0.00 3.73
409 982 5.241728 AGAAGAAGTCAAAGGGGAAAAATCG 59.758 40.000 0.00 0.00 0.00 3.34
410 983 6.656632 AGAAGAAGTCAAAGGGGAAAAATC 57.343 37.500 0.00 0.00 0.00 2.17
411 984 8.547481 TTTAGAAGAAGTCAAAGGGGAAAAAT 57.453 30.769 0.00 0.00 0.00 1.82
412 985 7.964666 TTTAGAAGAAGTCAAAGGGGAAAAA 57.035 32.000 0.00 0.00 0.00 1.94
413 986 7.964666 TTTTAGAAGAAGTCAAAGGGGAAAA 57.035 32.000 0.00 0.00 0.00 2.29
414 987 7.964666 TTTTTAGAAGAAGTCAAAGGGGAAA 57.035 32.000 0.00 0.00 0.00 3.13
415 988 9.649316 TTATTTTTAGAAGAAGTCAAAGGGGAA 57.351 29.630 0.00 0.00 0.00 3.97
416 989 9.649316 TTTATTTTTAGAAGAAGTCAAAGGGGA 57.351 29.630 0.00 0.00 0.00 4.81
437 1010 9.418045 CCACAGTATTTTGACCGAAAATTTATT 57.582 29.630 0.00 0.00 40.73 1.40
438 1011 8.798402 TCCACAGTATTTTGACCGAAAATTTAT 58.202 29.630 0.00 0.00 40.73 1.40
439 1012 8.167605 TCCACAGTATTTTGACCGAAAATTTA 57.832 30.769 0.00 0.00 40.73 1.40
440 1013 7.045126 TCCACAGTATTTTGACCGAAAATTT 57.955 32.000 0.00 0.00 40.73 1.82
441 1014 6.642707 TCCACAGTATTTTGACCGAAAATT 57.357 33.333 0.00 0.00 40.73 1.82
442 1015 6.834168 ATCCACAGTATTTTGACCGAAAAT 57.166 33.333 0.00 0.00 44.77 1.82
443 1016 6.938030 ACTATCCACAGTATTTTGACCGAAAA 59.062 34.615 0.00 0.00 37.93 2.29
444 1017 6.370442 CACTATCCACAGTATTTTGACCGAAA 59.630 38.462 0.00 0.00 0.00 3.46
445 1018 5.872617 CACTATCCACAGTATTTTGACCGAA 59.127 40.000 0.00 0.00 0.00 4.30
446 1019 5.186215 TCACTATCCACAGTATTTTGACCGA 59.814 40.000 0.00 0.00 0.00 4.69
447 1020 5.291128 GTCACTATCCACAGTATTTTGACCG 59.709 44.000 0.00 0.00 0.00 4.79
448 1021 5.585047 GGTCACTATCCACAGTATTTTGACC 59.415 44.000 0.00 0.00 32.63 4.02
449 1022 6.407202 AGGTCACTATCCACAGTATTTTGAC 58.593 40.000 0.00 0.00 0.00 3.18
450 1023 6.620877 AGGTCACTATCCACAGTATTTTGA 57.379 37.500 0.00 0.00 0.00 2.69
454 1027 8.816894 CCATTATAGGTCACTATCCACAGTATT 58.183 37.037 0.00 0.00 40.35 1.89
455 1028 7.956315 ACCATTATAGGTCACTATCCACAGTAT 59.044 37.037 0.00 0.00 40.35 2.12
456 1029 7.302948 ACCATTATAGGTCACTATCCACAGTA 58.697 38.462 0.00 0.00 40.35 2.74
457 1030 6.143915 ACCATTATAGGTCACTATCCACAGT 58.856 40.000 0.00 0.00 40.35 3.55
458 1031 6.672266 ACCATTATAGGTCACTATCCACAG 57.328 41.667 0.00 0.00 40.35 3.66
459 1032 8.555896 TTTACCATTATAGGTCACTATCCACA 57.444 34.615 0.00 0.00 42.06 4.17
495 1068 1.308998 AACCAGCGTTGACTTCAAGG 58.691 50.000 0.00 7.20 42.65 3.61
496 1069 3.420839 AAAACCAGCGTTGACTTCAAG 57.579 42.857 0.00 0.00 36.39 3.02
497 1070 3.859411 AAAAACCAGCGTTGACTTCAA 57.141 38.095 0.00 0.00 30.72 2.69
498 1071 4.966965 TTAAAAACCAGCGTTGACTTCA 57.033 36.364 0.00 0.00 30.72 3.02
499 1072 6.206498 AGAATTAAAAACCAGCGTTGACTTC 58.794 36.000 0.00 0.00 30.72 3.01
500 1073 6.144078 AGAATTAAAAACCAGCGTTGACTT 57.856 33.333 0.00 0.00 30.72 3.01
501 1074 5.767816 AGAATTAAAAACCAGCGTTGACT 57.232 34.783 0.00 0.00 30.72 3.41
502 1075 5.974751 TCAAGAATTAAAAACCAGCGTTGAC 59.025 36.000 0.00 0.00 30.72 3.18
503 1076 6.137794 TCAAGAATTAAAAACCAGCGTTGA 57.862 33.333 0.00 0.00 30.72 3.18
504 1077 6.820470 TTCAAGAATTAAAAACCAGCGTTG 57.180 33.333 0.00 0.00 30.72 4.10
505 1078 7.835634 TTTTCAAGAATTAAAAACCAGCGTT 57.164 28.000 0.00 0.00 0.00 4.84
506 1079 8.432110 AATTTTCAAGAATTAAAAACCAGCGT 57.568 26.923 0.00 0.00 25.89 5.07
533 1106 9.726438 ACTTGACTTTCTTTTGCACTAGTATAT 57.274 29.630 0.00 0.00 0.00 0.86
534 1107 9.555727 AACTTGACTTTCTTTTGCACTAGTATA 57.444 29.630 0.00 0.00 0.00 1.47
535 1108 8.451908 AACTTGACTTTCTTTTGCACTAGTAT 57.548 30.769 0.00 0.00 0.00 2.12
536 1109 7.859325 AACTTGACTTTCTTTTGCACTAGTA 57.141 32.000 0.00 0.00 0.00 1.82
537 1110 6.759497 AACTTGACTTTCTTTTGCACTAGT 57.241 33.333 0.00 0.00 0.00 2.57
538 1111 9.736023 AATAAACTTGACTTTCTTTTGCACTAG 57.264 29.630 0.00 0.00 0.00 2.57
539 1112 9.730420 GAATAAACTTGACTTTCTTTTGCACTA 57.270 29.630 0.00 0.00 0.00 2.74
540 1113 8.250332 TGAATAAACTTGACTTTCTTTTGCACT 58.750 29.630 0.00 0.00 0.00 4.40
541 1114 8.321005 GTGAATAAACTTGACTTTCTTTTGCAC 58.679 33.333 0.00 0.00 0.00 4.57
542 1115 8.031864 TGTGAATAAACTTGACTTTCTTTTGCA 58.968 29.630 0.00 0.00 0.00 4.08
543 1116 8.406172 TGTGAATAAACTTGACTTTCTTTTGC 57.594 30.769 0.00 0.00 0.00 3.68
602 1175 5.935945 TGGTTGTCTCTACATGAGGAAAAA 58.064 37.500 0.00 0.00 42.86 1.94
603 1176 5.513094 CCTGGTTGTCTCTACATGAGGAAAA 60.513 44.000 0.00 0.00 42.86 2.29
604 1177 4.020218 CCTGGTTGTCTCTACATGAGGAAA 60.020 45.833 0.00 0.00 42.86 3.13
605 1178 3.515502 CCTGGTTGTCTCTACATGAGGAA 59.484 47.826 0.00 0.00 42.86 3.36
606 1179 3.099905 CCTGGTTGTCTCTACATGAGGA 58.900 50.000 0.00 0.00 42.86 3.71
607 1180 3.099905 TCCTGGTTGTCTCTACATGAGG 58.900 50.000 0.00 0.00 42.86 3.86
608 1181 4.499183 GTTCCTGGTTGTCTCTACATGAG 58.501 47.826 0.00 0.00 43.96 2.90
609 1182 3.260884 GGTTCCTGGTTGTCTCTACATGA 59.739 47.826 0.00 0.00 34.97 3.07
610 1183 3.600388 GGTTCCTGGTTGTCTCTACATG 58.400 50.000 0.00 0.00 34.97 3.21
611 1184 2.233922 CGGTTCCTGGTTGTCTCTACAT 59.766 50.000 0.00 0.00 34.97 2.29
612 1185 1.616865 CGGTTCCTGGTTGTCTCTACA 59.383 52.381 0.00 0.00 0.00 2.74
613 1186 1.891150 TCGGTTCCTGGTTGTCTCTAC 59.109 52.381 0.00 0.00 0.00 2.59
614 1187 2.168496 CTCGGTTCCTGGTTGTCTCTA 58.832 52.381 0.00 0.00 0.00 2.43
615 1188 0.969894 CTCGGTTCCTGGTTGTCTCT 59.030 55.000 0.00 0.00 0.00 3.10
616 1189 0.037232 CCTCGGTTCCTGGTTGTCTC 60.037 60.000 0.00 0.00 0.00 3.36
617 1190 1.481056 CCCTCGGTTCCTGGTTGTCT 61.481 60.000 0.00 0.00 0.00 3.41
618 1191 1.003718 CCCTCGGTTCCTGGTTGTC 60.004 63.158 0.00 0.00 0.00 3.18
619 1192 2.526046 CCCCTCGGTTCCTGGTTGT 61.526 63.158 0.00 0.00 0.00 3.32
620 1193 1.196104 TACCCCTCGGTTCCTGGTTG 61.196 60.000 0.00 0.00 40.58 3.77
621 1194 0.253020 ATACCCCTCGGTTCCTGGTT 60.253 55.000 0.00 0.00 40.58 3.67
622 1195 0.253020 AATACCCCTCGGTTCCTGGT 60.253 55.000 0.00 0.00 40.58 4.00
623 1196 0.916809 AAATACCCCTCGGTTCCTGG 59.083 55.000 0.00 0.00 40.58 4.45
624 1197 1.557832 TGAAATACCCCTCGGTTCCTG 59.442 52.381 0.00 0.00 40.58 3.86
625 1198 1.838077 CTGAAATACCCCTCGGTTCCT 59.162 52.381 0.00 0.00 40.58 3.36
626 1199 1.746171 GCTGAAATACCCCTCGGTTCC 60.746 57.143 0.00 0.00 40.58 3.62
627 1200 1.065709 TGCTGAAATACCCCTCGGTTC 60.066 52.381 0.00 0.00 40.58 3.62
628 1201 0.988832 TGCTGAAATACCCCTCGGTT 59.011 50.000 0.00 0.00 40.58 4.44
630 1203 0.810031 CGTGCTGAAATACCCCTCGG 60.810 60.000 0.00 0.00 0.00 4.63
631 1204 0.108329 ACGTGCTGAAATACCCCTCG 60.108 55.000 0.00 0.00 0.00 4.63
632 1205 1.066430 TCACGTGCTGAAATACCCCTC 60.066 52.381 11.67 0.00 0.00 4.30
633 1206 0.981183 TCACGTGCTGAAATACCCCT 59.019 50.000 11.67 0.00 0.00 4.79
634 1207 1.066430 TCTCACGTGCTGAAATACCCC 60.066 52.381 11.67 0.00 0.00 4.95
635 1208 2.380084 TCTCACGTGCTGAAATACCC 57.620 50.000 11.67 0.00 0.00 3.69
685 1259 2.930682 GAGAGAATGGTGGCGAGTTAAC 59.069 50.000 0.00 0.00 0.00 2.01
707 1281 3.084786 CCAAAATGGAAGGAGAGGTCAC 58.915 50.000 0.00 0.00 40.96 3.67
738 1332 2.863153 CGGAGCGCTCAAACCAAG 59.137 61.111 36.27 15.17 0.00 3.61
1168 1771 4.373116 GAGCGACACGAGCCCCAA 62.373 66.667 0.00 0.00 34.64 4.12
1173 1776 4.803426 CAGGGGAGCGACACGAGC 62.803 72.222 0.00 0.00 0.00 5.03
1569 2202 8.583765 GGATTTTGATCGAAAAGATTTAAACCG 58.416 33.333 12.14 0.00 40.26 4.44
1580 2213 3.741856 TCACGTCGGATTTTGATCGAAAA 59.258 39.130 12.14 8.52 37.93 2.29
1643 2276 6.630443 GCAGTTTAGTCGCATGATTATGAAAG 59.370 38.462 0.85 0.00 36.36 2.62
1779 2416 9.119418 GGCATATGCACAACCATATAATATGTA 57.881 33.333 28.07 0.00 44.36 2.29
1780 2417 7.201723 CGGCATATGCACAACCATATAATATGT 60.202 37.037 28.07 0.00 44.36 2.29
1781 2418 7.012232 TCGGCATATGCACAACCATATAATATG 59.988 37.037 28.07 0.00 44.36 1.78
1782 2419 7.012327 GTCGGCATATGCACAACCATATAATAT 59.988 37.037 28.07 0.00 44.36 1.28
1783 2420 6.315144 GTCGGCATATGCACAACCATATAATA 59.685 38.462 28.07 0.00 44.36 0.98
1784 2421 5.123820 GTCGGCATATGCACAACCATATAAT 59.876 40.000 28.07 0.00 44.36 1.28
1785 2422 4.454161 GTCGGCATATGCACAACCATATAA 59.546 41.667 28.07 0.00 44.36 0.98
1786 2423 4.000325 GTCGGCATATGCACAACCATATA 59.000 43.478 28.07 0.00 44.36 0.86
1787 2424 2.813754 GTCGGCATATGCACAACCATAT 59.186 45.455 28.07 0.00 44.36 1.78
1788 2425 2.217750 GTCGGCATATGCACAACCATA 58.782 47.619 28.07 2.20 44.36 2.74
1789 2426 1.024271 GTCGGCATATGCACAACCAT 58.976 50.000 28.07 0.00 44.36 3.55
1790 2427 1.029408 GGTCGGCATATGCACAACCA 61.029 55.000 28.07 2.98 44.36 3.67
1791 2428 1.029408 TGGTCGGCATATGCACAACC 61.029 55.000 28.07 27.06 44.36 3.77
1792 2429 0.808125 TTGGTCGGCATATGCACAAC 59.192 50.000 28.07 20.44 44.36 3.32
1793 2430 1.761449 ATTGGTCGGCATATGCACAA 58.239 45.000 28.07 23.72 44.36 3.33
1794 2431 1.761449 AATTGGTCGGCATATGCACA 58.239 45.000 28.07 17.55 44.36 4.57
1795 2432 2.358898 AGAAATTGGTCGGCATATGCAC 59.641 45.455 28.07 18.28 44.36 4.57
1796 2433 2.653726 AGAAATTGGTCGGCATATGCA 58.346 42.857 28.07 6.84 44.36 3.96
1797 2434 3.715628 AAGAAATTGGTCGGCATATGC 57.284 42.857 19.79 19.79 41.14 3.14
1798 2435 5.977129 GGTTTAAGAAATTGGTCGGCATATG 59.023 40.000 0.00 0.00 0.00 1.78
1799 2436 5.220970 CGGTTTAAGAAATTGGTCGGCATAT 60.221 40.000 0.00 0.00 0.00 1.78
1805 2442 3.058501 ACAGCGGTTTAAGAAATTGGTCG 60.059 43.478 0.00 0.00 0.00 4.79
1808 2445 4.497473 TCACAGCGGTTTAAGAAATTGG 57.503 40.909 0.00 0.00 0.00 3.16
1839 2476 7.962995 TCTAGATGTGTCCTAGACAGATTTT 57.037 36.000 8.56 4.19 44.61 1.82
1890 2527 8.543774 ACAAATAGAGTGGACATCAGTTTAGAT 58.456 33.333 0.00 0.00 0.00 1.98
1891 2528 7.819415 CACAAATAGAGTGGACATCAGTTTAGA 59.181 37.037 0.00 0.00 33.43 2.10
1892 2529 7.968246 CACAAATAGAGTGGACATCAGTTTAG 58.032 38.462 0.00 0.00 33.43 1.85
1893 2530 7.905604 CACAAATAGAGTGGACATCAGTTTA 57.094 36.000 0.00 0.00 33.43 2.01
1894 2531 6.808008 CACAAATAGAGTGGACATCAGTTT 57.192 37.500 0.00 0.00 33.43 2.66
1905 2542 8.567948 ACAAAACAATAGACCACAAATAGAGTG 58.432 33.333 0.00 0.00 36.76 3.51
1906 2543 8.691661 ACAAAACAATAGACCACAAATAGAGT 57.308 30.769 0.00 0.00 0.00 3.24
1907 2544 8.237267 GGACAAAACAATAGACCACAAATAGAG 58.763 37.037 0.00 0.00 0.00 2.43
1908 2545 7.942341 AGGACAAAACAATAGACCACAAATAGA 59.058 33.333 0.00 0.00 0.00 1.98
1909 2546 8.110860 AGGACAAAACAATAGACCACAAATAG 57.889 34.615 0.00 0.00 0.00 1.73
1910 2547 9.226606 CTAGGACAAAACAATAGACCACAAATA 57.773 33.333 0.00 0.00 0.00 1.40
1911 2548 6.976934 AGGACAAAACAATAGACCACAAAT 57.023 33.333 0.00 0.00 0.00 2.32
1912 2549 7.057894 ACTAGGACAAAACAATAGACCACAAA 58.942 34.615 0.00 0.00 0.00 2.83
1913 2550 6.597562 ACTAGGACAAAACAATAGACCACAA 58.402 36.000 0.00 0.00 0.00 3.33
1914 2551 6.182507 ACTAGGACAAAACAATAGACCACA 57.817 37.500 0.00 0.00 0.00 4.17
1915 2552 7.506328 AAACTAGGACAAAACAATAGACCAC 57.494 36.000 0.00 0.00 0.00 4.16
1916 2553 8.528044 AAAAACTAGGACAAAACAATAGACCA 57.472 30.769 0.00 0.00 0.00 4.02
1940 2577 4.698583 ATGCAGCAACAAAAAGCAAAAA 57.301 31.818 0.00 0.00 38.85 1.94
1941 2578 4.698583 AATGCAGCAACAAAAAGCAAAA 57.301 31.818 0.00 0.00 38.85 2.44
1942 2579 7.670009 ATATAATGCAGCAACAAAAAGCAAA 57.330 28.000 0.00 0.00 38.85 3.68
1943 2580 8.945481 ATATATAATGCAGCAACAAAAAGCAA 57.055 26.923 0.00 0.00 38.85 3.91
1944 2581 8.945481 AATATATAATGCAGCAACAAAAAGCA 57.055 26.923 0.00 0.00 39.79 3.91
1949 2586 9.926158 CCCATAAATATATAATGCAGCAACAAA 57.074 29.630 0.00 0.00 0.00 2.83
1950 2587 9.306777 TCCCATAAATATATAATGCAGCAACAA 57.693 29.630 0.00 0.00 0.00 2.83
1951 2588 8.876303 TCCCATAAATATATAATGCAGCAACA 57.124 30.769 0.00 0.00 0.00 3.33
1952 2589 7.917505 GCTCCCATAAATATATAATGCAGCAAC 59.082 37.037 0.00 0.00 30.84 4.17
1953 2590 7.835682 AGCTCCCATAAATATATAATGCAGCAA 59.164 33.333 19.52 0.00 31.96 3.91
1954 2591 7.348815 AGCTCCCATAAATATATAATGCAGCA 58.651 34.615 19.52 0.00 31.96 4.41
1955 2592 7.814264 AGCTCCCATAAATATATAATGCAGC 57.186 36.000 14.74 14.74 0.00 5.25
1964 2601 9.100197 TGTCACATCTAAGCTCCCATAAATATA 57.900 33.333 0.00 0.00 0.00 0.86
1965 2602 7.977818 TGTCACATCTAAGCTCCCATAAATAT 58.022 34.615 0.00 0.00 0.00 1.28
1966 2603 7.373617 TGTCACATCTAAGCTCCCATAAATA 57.626 36.000 0.00 0.00 0.00 1.40
1967 2604 6.252599 TGTCACATCTAAGCTCCCATAAAT 57.747 37.500 0.00 0.00 0.00 1.40
1968 2605 5.692115 TGTCACATCTAAGCTCCCATAAA 57.308 39.130 0.00 0.00 0.00 1.40
1969 2606 5.221722 GGATGTCACATCTAAGCTCCCATAA 60.222 44.000 17.46 0.00 0.00 1.90
1970 2607 4.284490 GGATGTCACATCTAAGCTCCCATA 59.716 45.833 17.46 0.00 0.00 2.74
1971 2608 3.072184 GGATGTCACATCTAAGCTCCCAT 59.928 47.826 17.46 0.00 0.00 4.00
1972 2609 2.435805 GGATGTCACATCTAAGCTCCCA 59.564 50.000 17.46 0.00 0.00 4.37
1973 2610 2.703007 AGGATGTCACATCTAAGCTCCC 59.297 50.000 17.46 0.00 0.00 4.30
1974 2611 4.414337 AAGGATGTCACATCTAAGCTCC 57.586 45.455 17.46 0.18 0.00 4.70
1975 2612 7.849804 TTTTAAGGATGTCACATCTAAGCTC 57.150 36.000 17.46 0.00 0.00 4.09
2027 2664 9.801873 CGTCATTGGGAAAATAGTGAATTATTT 57.198 29.630 0.00 0.00 35.35 1.40
2028 2665 8.413229 CCGTCATTGGGAAAATAGTGAATTATT 58.587 33.333 0.00 0.00 0.00 1.40
2029 2666 7.559897 ACCGTCATTGGGAAAATAGTGAATTAT 59.440 33.333 0.00 0.00 0.00 1.28
2030 2667 6.887545 ACCGTCATTGGGAAAATAGTGAATTA 59.112 34.615 0.00 0.00 0.00 1.40
2031 2668 5.714806 ACCGTCATTGGGAAAATAGTGAATT 59.285 36.000 0.00 0.00 0.00 2.17
2032 2669 5.125417 CACCGTCATTGGGAAAATAGTGAAT 59.875 40.000 0.00 0.00 0.00 2.57
2033 2670 4.457603 CACCGTCATTGGGAAAATAGTGAA 59.542 41.667 0.00 0.00 0.00 3.18
2034 2671 4.006989 CACCGTCATTGGGAAAATAGTGA 58.993 43.478 0.00 0.00 0.00 3.41
2035 2672 4.006989 TCACCGTCATTGGGAAAATAGTG 58.993 43.478 0.00 0.00 0.00 2.74
2036 2673 4.295141 TCACCGTCATTGGGAAAATAGT 57.705 40.909 0.00 0.00 0.00 2.12
2037 2674 5.414454 TCTTTCACCGTCATTGGGAAAATAG 59.586 40.000 0.00 0.00 31.92 1.73
2038 2675 5.317808 TCTTTCACCGTCATTGGGAAAATA 58.682 37.500 0.00 0.00 31.92 1.40
2039 2676 4.148838 TCTTTCACCGTCATTGGGAAAAT 58.851 39.130 0.00 0.00 31.92 1.82
2040 2677 3.556999 TCTTTCACCGTCATTGGGAAAA 58.443 40.909 0.00 0.00 31.92 2.29
2041 2678 3.146066 CTCTTTCACCGTCATTGGGAAA 58.854 45.455 0.00 0.00 31.63 3.13
2042 2679 2.778299 CTCTTTCACCGTCATTGGGAA 58.222 47.619 0.00 0.00 0.00 3.97
2043 2680 1.610624 GCTCTTTCACCGTCATTGGGA 60.611 52.381 0.00 0.00 0.00 4.37
2044 2681 0.804989 GCTCTTTCACCGTCATTGGG 59.195 55.000 0.00 0.00 0.00 4.12
2045 2682 1.813513 AGCTCTTTCACCGTCATTGG 58.186 50.000 0.00 0.00 0.00 3.16
2046 2683 3.310774 CCATAGCTCTTTCACCGTCATTG 59.689 47.826 0.00 0.00 0.00 2.82
2047 2684 3.055094 ACCATAGCTCTTTCACCGTCATT 60.055 43.478 0.00 0.00 0.00 2.57
2048 2685 2.501723 ACCATAGCTCTTTCACCGTCAT 59.498 45.455 0.00 0.00 0.00 3.06
2049 2686 1.899814 ACCATAGCTCTTTCACCGTCA 59.100 47.619 0.00 0.00 0.00 4.35
2050 2687 2.094182 TGACCATAGCTCTTTCACCGTC 60.094 50.000 0.00 0.00 0.00 4.79
2051 2688 1.899814 TGACCATAGCTCTTTCACCGT 59.100 47.619 0.00 0.00 0.00 4.83
2052 2689 2.672961 TGACCATAGCTCTTTCACCG 57.327 50.000 0.00 0.00 0.00 4.94
2053 2690 4.142609 TGATGACCATAGCTCTTTCACC 57.857 45.455 0.00 0.00 0.00 4.02
2054 2691 5.121811 ACATGATGACCATAGCTCTTTCAC 58.878 41.667 0.00 0.00 33.31 3.18
2055 2692 5.363562 ACATGATGACCATAGCTCTTTCA 57.636 39.130 0.00 0.00 33.31 2.69
2056 2693 5.587844 ACAACATGATGACCATAGCTCTTTC 59.412 40.000 10.29 0.00 33.31 2.62
2057 2694 5.503927 ACAACATGATGACCATAGCTCTTT 58.496 37.500 10.29 0.00 33.31 2.52
2058 2695 5.108187 ACAACATGATGACCATAGCTCTT 57.892 39.130 10.29 0.00 33.31 2.85
2059 2696 4.767578 ACAACATGATGACCATAGCTCT 57.232 40.909 10.29 0.00 33.31 4.09
2060 2697 4.877823 TCAACAACATGATGACCATAGCTC 59.122 41.667 10.29 0.00 33.31 4.09
2061 2698 4.847198 TCAACAACATGATGACCATAGCT 58.153 39.130 10.29 0.00 33.31 3.32
2062 2699 5.565592 TTCAACAACATGATGACCATAGC 57.434 39.130 10.29 0.00 33.31 2.97
2066 2703 9.460019 TCTATAATTTCAACAACATGATGACCA 57.540 29.630 10.29 0.00 28.62 4.02
2075 2712 9.921637 GGGAAATGTTCTATAATTTCAACAACA 57.078 29.630 9.58 0.00 42.18 3.33
2078 2715 8.250332 GCAGGGAAATGTTCTATAATTTCAACA 58.750 33.333 9.58 0.00 42.18 3.33
2079 2716 8.250332 TGCAGGGAAATGTTCTATAATTTCAAC 58.750 33.333 9.58 3.38 42.18 3.18
2080 2717 8.359875 TGCAGGGAAATGTTCTATAATTTCAA 57.640 30.769 9.58 0.00 42.18 2.69
2081 2718 7.953005 TGCAGGGAAATGTTCTATAATTTCA 57.047 32.000 9.58 0.00 42.18 2.69
2082 2719 9.651913 TTTTGCAGGGAAATGTTCTATAATTTC 57.348 29.630 0.00 0.00 40.51 2.17
2084 2721 9.657419 CTTTTTGCAGGGAAATGTTCTATAATT 57.343 29.630 0.00 0.00 0.00 1.40
2085 2722 9.034800 TCTTTTTGCAGGGAAATGTTCTATAAT 57.965 29.630 0.00 0.00 0.00 1.28
2086 2723 8.415950 TCTTTTTGCAGGGAAATGTTCTATAA 57.584 30.769 0.00 0.00 0.00 0.98
2087 2724 8.415950 TTCTTTTTGCAGGGAAATGTTCTATA 57.584 30.769 0.00 0.00 0.00 1.31
2088 2725 6.916360 TCTTTTTGCAGGGAAATGTTCTAT 57.084 33.333 0.00 0.00 0.00 1.98
2089 2726 6.723298 TTCTTTTTGCAGGGAAATGTTCTA 57.277 33.333 0.00 0.00 0.00 2.10
2090 2727 5.612725 TTCTTTTTGCAGGGAAATGTTCT 57.387 34.783 0.00 0.00 0.00 3.01
2091 2728 6.676237 TTTTCTTTTTGCAGGGAAATGTTC 57.324 33.333 0.00 0.00 0.00 3.18
2113 2750 6.382919 TGGGCTACAGGTTCTATACTTTTT 57.617 37.500 0.00 0.00 0.00 1.94
2114 2751 6.576778 ATGGGCTACAGGTTCTATACTTTT 57.423 37.500 0.00 0.00 0.00 2.27
2115 2752 6.576778 AATGGGCTACAGGTTCTATACTTT 57.423 37.500 0.00 0.00 0.00 2.66
2116 2753 6.576778 AAATGGGCTACAGGTTCTATACTT 57.423 37.500 0.00 0.00 0.00 2.24
2117 2754 6.576778 AAAATGGGCTACAGGTTCTATACT 57.423 37.500 0.00 0.00 0.00 2.12
2118 2755 8.154856 TGATAAAATGGGCTACAGGTTCTATAC 58.845 37.037 0.00 0.00 0.00 1.47
2119 2756 8.270137 TGATAAAATGGGCTACAGGTTCTATA 57.730 34.615 0.00 0.00 0.00 1.31
2120 2757 7.149202 TGATAAAATGGGCTACAGGTTCTAT 57.851 36.000 0.00 0.00 0.00 1.98
2121 2758 6.569127 TGATAAAATGGGCTACAGGTTCTA 57.431 37.500 0.00 0.00 0.00 2.10
2122 2759 5.450818 TGATAAAATGGGCTACAGGTTCT 57.549 39.130 0.00 0.00 0.00 3.01
2123 2760 6.715347 AATGATAAAATGGGCTACAGGTTC 57.285 37.500 0.00 0.00 0.00 3.62
2124 2761 7.180051 TGAAAATGATAAAATGGGCTACAGGTT 59.820 33.333 0.00 0.00 0.00 3.50
2125 2762 6.667414 TGAAAATGATAAAATGGGCTACAGGT 59.333 34.615 0.00 0.00 0.00 4.00
2126 2763 7.111247 TGAAAATGATAAAATGGGCTACAGG 57.889 36.000 0.00 0.00 0.00 4.00
2149 2786 9.374838 CCTCTTGGAATTTTTGAGGAATTATTG 57.625 33.333 10.35 0.00 45.07 1.90
2150 2787 9.104713 ACCTCTTGGAATTTTTGAGGAATTATT 57.895 29.630 18.26 0.00 45.07 1.40
2151 2788 8.670521 ACCTCTTGGAATTTTTGAGGAATTAT 57.329 30.769 18.26 0.94 45.07 1.28
2152 2789 8.491045 AACCTCTTGGAATTTTTGAGGAATTA 57.509 30.769 18.26 0.00 45.07 1.40
2153 2790 7.071071 TGAACCTCTTGGAATTTTTGAGGAATT 59.929 33.333 18.26 8.16 45.07 2.17
2154 2791 6.554605 TGAACCTCTTGGAATTTTTGAGGAAT 59.445 34.615 18.26 10.31 45.07 3.01
2155 2792 5.896678 TGAACCTCTTGGAATTTTTGAGGAA 59.103 36.000 18.26 6.59 45.07 3.36
2156 2793 5.454062 TGAACCTCTTGGAATTTTTGAGGA 58.546 37.500 18.26 1.46 45.07 3.71
2157 2794 5.789643 TGAACCTCTTGGAATTTTTGAGG 57.210 39.130 12.90 12.90 46.93 3.86
2158 2795 7.977853 CCATATGAACCTCTTGGAATTTTTGAG 59.022 37.037 3.65 0.00 37.04 3.02
2159 2796 7.454380 ACCATATGAACCTCTTGGAATTTTTGA 59.546 33.333 3.65 0.00 37.04 2.69
2160 2797 7.614494 ACCATATGAACCTCTTGGAATTTTTG 58.386 34.615 3.65 0.00 37.04 2.44
2161 2798 7.093333 GGACCATATGAACCTCTTGGAATTTTT 60.093 37.037 3.65 0.00 37.04 1.94
2162 2799 6.381133 GGACCATATGAACCTCTTGGAATTTT 59.619 38.462 3.65 0.00 37.04 1.82
2163 2800 5.893824 GGACCATATGAACCTCTTGGAATTT 59.106 40.000 3.65 0.00 37.04 1.82
2164 2801 5.044179 TGGACCATATGAACCTCTTGGAATT 60.044 40.000 3.65 0.00 37.04 2.17
2165 2802 4.478317 TGGACCATATGAACCTCTTGGAAT 59.522 41.667 3.65 0.00 37.04 3.01
2166 2803 3.849574 TGGACCATATGAACCTCTTGGAA 59.150 43.478 3.65 0.00 37.04 3.53
2167 2804 3.459828 TGGACCATATGAACCTCTTGGA 58.540 45.455 3.65 0.00 37.04 3.53
2168 2805 3.931907 TGGACCATATGAACCTCTTGG 57.068 47.619 3.65 0.00 39.83 3.61
2169 2806 6.072286 GCATTATGGACCATATGAACCTCTTG 60.072 42.308 15.05 0.00 0.00 3.02
2170 2807 6.006449 GCATTATGGACCATATGAACCTCTT 58.994 40.000 15.05 0.53 0.00 2.85
2171 2808 5.073554 TGCATTATGGACCATATGAACCTCT 59.926 40.000 15.05 2.53 0.00 3.69
2172 2809 5.182001 GTGCATTATGGACCATATGAACCTC 59.818 44.000 15.05 4.14 32.15 3.85
2173 2810 5.072741 GTGCATTATGGACCATATGAACCT 58.927 41.667 15.05 0.00 32.15 3.50
2174 2811 4.083324 CGTGCATTATGGACCATATGAACC 60.083 45.833 15.05 7.67 35.09 3.62
2175 2812 4.754618 TCGTGCATTATGGACCATATGAAC 59.245 41.667 15.05 16.42 35.09 3.18
2176 2813 4.967036 TCGTGCATTATGGACCATATGAA 58.033 39.130 15.05 7.58 35.09 2.57
2177 2814 4.615588 TCGTGCATTATGGACCATATGA 57.384 40.909 15.05 3.66 35.09 2.15
2178 2815 5.885230 ATTCGTGCATTATGGACCATATG 57.115 39.130 15.05 14.82 35.09 1.78
2179 2816 7.994425 TTTATTCGTGCATTATGGACCATAT 57.006 32.000 15.05 3.20 35.09 1.78
2180 2817 7.809546 TTTTATTCGTGCATTATGGACCATA 57.190 32.000 10.31 10.31 35.09 2.74
2181 2818 6.707440 TTTTATTCGTGCATTATGGACCAT 57.293 33.333 12.67 12.67 35.09 3.55
2182 2819 6.151985 ACTTTTTATTCGTGCATTATGGACCA 59.848 34.615 11.10 0.00 35.09 4.02
2183 2820 6.560711 ACTTTTTATTCGTGCATTATGGACC 58.439 36.000 11.10 0.00 35.09 4.46
2184 2821 9.169468 CATACTTTTTATTCGTGCATTATGGAC 57.831 33.333 6.79 6.79 35.21 4.02
2185 2822 9.114952 TCATACTTTTTATTCGTGCATTATGGA 57.885 29.630 0.00 0.00 0.00 3.41
2186 2823 9.729023 TTCATACTTTTTATTCGTGCATTATGG 57.271 29.630 0.00 0.00 0.00 2.74
2190 2827 9.691362 AACTTTCATACTTTTTATTCGTGCATT 57.309 25.926 0.00 0.00 0.00 3.56
2191 2828 9.691362 AAACTTTCATACTTTTTATTCGTGCAT 57.309 25.926 0.00 0.00 0.00 3.96
2200 2837 9.070179 GGTGGGACTAAACTTTCATACTTTTTA 57.930 33.333 0.00 0.00 0.00 1.52
2201 2838 7.783119 AGGTGGGACTAAACTTTCATACTTTTT 59.217 33.333 0.00 0.00 0.00 1.94
2202 2839 7.295340 AGGTGGGACTAAACTTTCATACTTTT 58.705 34.615 0.00 0.00 0.00 2.27
2203 2840 6.849151 AGGTGGGACTAAACTTTCATACTTT 58.151 36.000 0.00 0.00 0.00 2.66
2204 2841 6.449830 AGGTGGGACTAAACTTTCATACTT 57.550 37.500 0.00 0.00 0.00 2.24
2205 2842 5.337330 CGAGGTGGGACTAAACTTTCATACT 60.337 44.000 0.00 0.00 0.00 2.12
2206 2843 4.868734 CGAGGTGGGACTAAACTTTCATAC 59.131 45.833 0.00 0.00 0.00 2.39
2207 2844 4.773674 TCGAGGTGGGACTAAACTTTCATA 59.226 41.667 0.00 0.00 0.00 2.15
2208 2845 3.581332 TCGAGGTGGGACTAAACTTTCAT 59.419 43.478 0.00 0.00 0.00 2.57
2209 2846 2.967201 TCGAGGTGGGACTAAACTTTCA 59.033 45.455 0.00 0.00 0.00 2.69
2210 2847 3.672767 TCGAGGTGGGACTAAACTTTC 57.327 47.619 0.00 0.00 0.00 2.62
2211 2848 4.202430 ACAATCGAGGTGGGACTAAACTTT 60.202 41.667 4.13 0.00 0.00 2.66
2212 2849 3.326880 ACAATCGAGGTGGGACTAAACTT 59.673 43.478 4.13 0.00 0.00 2.66
2213 2850 2.904434 ACAATCGAGGTGGGACTAAACT 59.096 45.455 4.13 0.00 0.00 2.66
2214 2851 3.000727 CACAATCGAGGTGGGACTAAAC 58.999 50.000 11.16 0.00 32.65 2.01
2215 2852 3.328382 CACAATCGAGGTGGGACTAAA 57.672 47.619 11.16 0.00 32.65 1.85
2223 2860 0.391661 CACCCTCCACAATCGAGGTG 60.392 60.000 11.86 11.86 44.75 4.00
2224 2861 0.836400 ACACCCTCCACAATCGAGGT 60.836 55.000 3.33 0.00 44.75 3.85
2225 2862 0.391661 CACACCCTCCACAATCGAGG 60.392 60.000 0.00 0.00 45.65 4.63
2226 2863 0.321671 ACACACCCTCCACAATCGAG 59.678 55.000 0.00 0.00 0.00 4.04
2227 2864 0.034756 CACACACCCTCCACAATCGA 59.965 55.000 0.00 0.00 0.00 3.59
2228 2865 0.034756 TCACACACCCTCCACAATCG 59.965 55.000 0.00 0.00 0.00 3.34
2229 2866 2.154462 CTTCACACACCCTCCACAATC 58.846 52.381 0.00 0.00 0.00 2.67
2230 2867 1.774254 TCTTCACACACCCTCCACAAT 59.226 47.619 0.00 0.00 0.00 2.71
2231 2868 1.208706 TCTTCACACACCCTCCACAA 58.791 50.000 0.00 0.00 0.00 3.33
2232 2869 1.072173 CATCTTCACACACCCTCCACA 59.928 52.381 0.00 0.00 0.00 4.17
2233 2870 1.347707 TCATCTTCACACACCCTCCAC 59.652 52.381 0.00 0.00 0.00 4.02
2234 2871 1.347707 GTCATCTTCACACACCCTCCA 59.652 52.381 0.00 0.00 0.00 3.86
2235 2872 1.625818 AGTCATCTTCACACACCCTCC 59.374 52.381 0.00 0.00 0.00 4.30
2236 2873 2.300152 TGAGTCATCTTCACACACCCTC 59.700 50.000 0.00 0.00 0.00 4.30
2237 2874 2.329267 TGAGTCATCTTCACACACCCT 58.671 47.619 0.00 0.00 0.00 4.34
2238 2875 2.839486 TGAGTCATCTTCACACACCC 57.161 50.000 0.00 0.00 0.00 4.61
2239 2876 4.820897 TGTATGAGTCATCTTCACACACC 58.179 43.478 9.42 0.00 0.00 4.16
2240 2877 6.101997 TCATGTATGAGTCATCTTCACACAC 58.898 40.000 9.42 0.02 32.11 3.82
2241 2878 6.284891 TCATGTATGAGTCATCTTCACACA 57.715 37.500 9.42 7.74 32.11 3.72


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.