Multiple sequence alignment - TraesCS4D01G097300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G097300 chr4D 100.000 3785 0 0 1 3785 74093992 74097776 0.000000e+00 6990.0
1 TraesCS4D01G097300 chr4D 87.188 320 31 2 1 319 393875963 393876273 4.650000e-94 355.0
2 TraesCS4D01G097300 chr4D 78.414 454 56 19 3352 3765 489238195 489237744 1.350000e-64 257.0
3 TraesCS4D01G097300 chr4A 88.898 1216 91 16 2027 3207 514000425 513999219 0.000000e+00 1458.0
4 TraesCS4D01G097300 chr4A 88.966 1151 58 28 605 1740 514003647 514002551 0.000000e+00 1358.0
5 TraesCS4D01G097300 chr4A 90.390 333 18 8 3464 3783 513997522 513997191 3.490000e-115 425.0
6 TraesCS4D01G097300 chr4A 90.311 289 20 4 3206 3487 513999182 513998895 4.620000e-99 372.0
7 TraesCS4D01G097300 chr4A 84.293 191 18 7 490 674 514054369 514054185 3.890000e-40 176.0
8 TraesCS4D01G097300 chr4A 88.636 44 5 0 3166 3209 736607250 736607293 2.000000e-03 54.7
9 TraesCS4D01G097300 chr4B 94.263 767 23 9 597 1351 106231412 106232169 0.000000e+00 1153.0
10 TraesCS4D01G097300 chr4B 87.085 542 40 13 2653 3174 106233091 106233622 1.510000e-163 586.0
11 TraesCS4D01G097300 chr4B 93.011 186 12 1 2384 2569 106232797 106232981 1.730000e-68 270.0
12 TraesCS4D01G097300 chr4B 87.117 163 17 3 474 634 106230995 106231155 8.350000e-42 182.0
13 TraesCS4D01G097300 chr7D 89.295 383 40 1 1 383 161513436 161513055 2.640000e-131 479.0
14 TraesCS4D01G097300 chr7D 84.153 183 13 5 1747 1914 246073875 246074056 3.030000e-36 163.0
15 TraesCS4D01G097300 chr7D 89.796 49 2 3 3163 3209 113720605 113720652 4.080000e-05 60.2
16 TraesCS4D01G097300 chr7D 90.476 42 3 1 3168 3209 122836259 122836299 2.000000e-03 54.7
17 TraesCS4D01G097300 chr1A 86.053 380 48 4 1 377 61267538 61267915 1.640000e-108 403.0
18 TraesCS4D01G097300 chr1A 93.478 46 2 1 3176 3220 331237298 331237253 2.440000e-07 67.6
19 TraesCS4D01G097300 chr7A 85.789 380 52 2 6 383 394838950 394838571 5.890000e-108 401.0
20 TraesCS4D01G097300 chr7A 87.273 275 29 6 14 285 505010594 505010323 3.670000e-80 309.0
21 TraesCS4D01G097300 chr2B 87.097 341 42 2 43 382 635754678 635754339 5.930000e-103 385.0
22 TraesCS4D01G097300 chr6A 83.746 283 45 1 1 282 431173516 431173798 2.240000e-67 267.0
23 TraesCS4D01G097300 chr1D 90.741 108 9 1 1 107 116752736 116752629 3.940000e-30 143.0
24 TraesCS4D01G097300 chr7B 92.857 98 6 1 1818 1914 222312729 222312826 1.420000e-29 141.0
25 TraesCS4D01G097300 chr7B 97.143 35 1 0 3175 3209 27975323 27975289 4.080000e-05 60.2
26 TraesCS4D01G097300 chr6B 85.827 127 17 1 3595 3721 518606321 518606196 2.370000e-27 134.0
27 TraesCS4D01G097300 chr3A 91.379 58 3 1 3540 3597 608273366 608273421 1.130000e-10 78.7
28 TraesCS4D01G097300 chr6D 92.857 42 2 1 3168 3208 106423461 106423420 4.080000e-05 60.2
29 TraesCS4D01G097300 chr5D 100.000 32 0 0 3752 3783 480989139 480989108 4.080000e-05 60.2
30 TraesCS4D01G097300 chr5B 94.595 37 2 0 3173 3209 507119289 507119325 1.470000e-04 58.4
31 TraesCS4D01G097300 chr2A 100.000 31 0 0 3179 3209 71436660 71436630 1.470000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G097300 chr4D 74093992 74097776 3784 False 6990.00 6990 100.00000 1 3785 1 chr4D.!!$F1 3784
1 TraesCS4D01G097300 chr4A 513997191 514003647 6456 True 903.25 1458 89.64125 605 3783 4 chr4A.!!$R2 3178
2 TraesCS4D01G097300 chr4B 106230995 106233622 2627 False 547.75 1153 90.36900 474 3174 4 chr4B.!!$F1 2700

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
218 219 0.036164 TGGTTGTCATGGTCCCTTCG 59.964 55.0 0.0 0.0 0.0 3.79 F
1743 2066 0.032952 TGCACCCACGTAGACTTGTC 59.967 55.0 0.0 0.0 0.0 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2058 4414 0.035739 GGACTAACAAGGGCAACGGA 59.964 55.0 0.00 0.00 37.60 4.69 R
3375 6225 0.030369 GTATGTGCCGCTACGTAGCT 59.970 55.0 36.89 23.53 46.85 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
107 108 4.954970 CTGGCGTGGCTGTTGGGT 62.955 66.667 0.00 0.00 0.00 4.51
116 117 2.281761 CTGTTGGGTGCGCTCCTT 60.282 61.111 26.25 0.00 0.00 3.36
117 118 1.898574 CTGTTGGGTGCGCTCCTTT 60.899 57.895 26.25 0.00 0.00 3.11
118 119 2.133742 CTGTTGGGTGCGCTCCTTTG 62.134 60.000 26.25 10.01 0.00 2.77
119 120 3.294493 TTGGGTGCGCTCCTTTGC 61.294 61.111 26.25 11.47 0.00 3.68
122 123 4.043200 GGTGCGCTCCTTTGCCAC 62.043 66.667 20.97 0.32 35.17 5.01
123 124 4.043200 GTGCGCTCCTTTGCCACC 62.043 66.667 9.73 0.00 32.18 4.61
176 177 3.411351 CGTGTCCGCCCAAGAACG 61.411 66.667 0.00 0.00 0.00 3.95
177 178 3.723348 GTGTCCGCCCAAGAACGC 61.723 66.667 0.00 0.00 0.00 4.84
204 205 3.767230 CGCTCGCTGTCGTGGTTG 61.767 66.667 0.00 0.00 36.96 3.77
205 206 2.661866 GCTCGCTGTCGTGGTTGT 60.662 61.111 0.00 0.00 36.96 3.32
206 207 2.658707 GCTCGCTGTCGTGGTTGTC 61.659 63.158 0.00 0.00 36.96 3.18
207 208 1.299850 CTCGCTGTCGTGGTTGTCA 60.300 57.895 0.00 0.00 36.96 3.58
208 209 0.667487 CTCGCTGTCGTGGTTGTCAT 60.667 55.000 0.00 0.00 36.96 3.06
209 210 0.943835 TCGCTGTCGTGGTTGTCATG 60.944 55.000 0.00 0.00 36.96 3.07
210 211 1.868997 GCTGTCGTGGTTGTCATGG 59.131 57.895 0.00 0.00 33.31 3.66
211 212 0.884704 GCTGTCGTGGTTGTCATGGT 60.885 55.000 0.00 0.00 33.31 3.55
212 213 1.148310 CTGTCGTGGTTGTCATGGTC 58.852 55.000 0.00 0.00 33.31 4.02
213 214 0.250124 TGTCGTGGTTGTCATGGTCC 60.250 55.000 0.00 0.00 33.31 4.46
214 215 0.953960 GTCGTGGTTGTCATGGTCCC 60.954 60.000 0.00 0.00 33.31 4.46
215 216 1.125093 TCGTGGTTGTCATGGTCCCT 61.125 55.000 0.00 0.00 33.31 4.20
216 217 0.250727 CGTGGTTGTCATGGTCCCTT 60.251 55.000 0.00 0.00 0.00 3.95
217 218 1.534729 GTGGTTGTCATGGTCCCTTC 58.465 55.000 0.00 0.00 0.00 3.46
218 219 0.036164 TGGTTGTCATGGTCCCTTCG 59.964 55.000 0.00 0.00 0.00 3.79
219 220 0.323629 GGTTGTCATGGTCCCTTCGA 59.676 55.000 0.00 0.00 0.00 3.71
220 221 1.439679 GTTGTCATGGTCCCTTCGAC 58.560 55.000 0.00 0.00 41.15 4.20
227 228 4.754667 GTCCCTTCGACCGCCACC 62.755 72.222 0.00 0.00 35.23 4.61
235 236 4.367023 GACCGCCACCGTGCTGTA 62.367 66.667 0.00 0.00 0.00 2.74
236 237 4.373116 ACCGCCACCGTGCTGTAG 62.373 66.667 0.00 0.00 0.00 2.74
237 238 4.063967 CCGCCACCGTGCTGTAGA 62.064 66.667 0.00 0.00 0.00 2.59
238 239 2.809601 CGCCACCGTGCTGTAGAC 60.810 66.667 0.00 0.00 0.00 2.59
239 240 2.434359 GCCACCGTGCTGTAGACC 60.434 66.667 0.00 0.00 0.00 3.85
240 241 2.126071 CCACCGTGCTGTAGACCG 60.126 66.667 0.00 0.00 0.00 4.79
241 242 2.649034 CACCGTGCTGTAGACCGT 59.351 61.111 0.00 0.00 0.00 4.83
242 243 1.733041 CACCGTGCTGTAGACCGTG 60.733 63.158 0.00 0.00 0.00 4.94
243 244 2.126071 CCGTGCTGTAGACCGTGG 60.126 66.667 0.00 0.00 0.00 4.94
244 245 2.809601 CGTGCTGTAGACCGTGGC 60.810 66.667 0.00 0.00 0.00 5.01
245 246 2.342279 GTGCTGTAGACCGTGGCA 59.658 61.111 0.00 0.00 0.00 4.92
246 247 1.738099 GTGCTGTAGACCGTGGCAG 60.738 63.158 0.00 0.00 33.47 4.85
247 248 2.815647 GCTGTAGACCGTGGCAGC 60.816 66.667 0.00 0.00 45.70 5.25
248 249 2.125512 CTGTAGACCGTGGCAGCC 60.126 66.667 3.66 3.66 0.00 4.85
249 250 3.665675 CTGTAGACCGTGGCAGCCC 62.666 68.421 9.64 0.00 0.00 5.19
250 251 4.814294 GTAGACCGTGGCAGCCCG 62.814 72.222 9.64 12.13 0.00 6.13
264 265 4.181010 CCCGAGGAGGCCACCATG 62.181 72.222 22.29 12.52 39.21 3.66
265 266 4.181010 CCGAGGAGGCCACCATGG 62.181 72.222 22.29 17.66 41.55 3.66
266 267 4.181010 CGAGGAGGCCACCATGGG 62.181 72.222 22.29 4.89 38.19 4.00
267 268 3.017581 GAGGAGGCCACCATGGGT 61.018 66.667 22.29 0.00 38.19 4.51
294 295 4.113815 CGCCCCTGCCCATCTTCA 62.114 66.667 0.00 0.00 0.00 3.02
295 296 2.360191 GCCCCTGCCCATCTTCAA 59.640 61.111 0.00 0.00 0.00 2.69
296 297 2.054453 GCCCCTGCCCATCTTCAAC 61.054 63.158 0.00 0.00 0.00 3.18
297 298 1.750399 CCCCTGCCCATCTTCAACG 60.750 63.158 0.00 0.00 0.00 4.10
298 299 1.002134 CCCTGCCCATCTTCAACGT 60.002 57.895 0.00 0.00 0.00 3.99
299 300 1.308069 CCCTGCCCATCTTCAACGTG 61.308 60.000 0.00 0.00 0.00 4.49
300 301 1.503542 CTGCCCATCTTCAACGTGC 59.496 57.895 0.00 0.00 0.00 5.34
301 302 1.926511 CTGCCCATCTTCAACGTGCC 61.927 60.000 0.00 0.00 0.00 5.01
302 303 1.675641 GCCCATCTTCAACGTGCCT 60.676 57.895 0.00 0.00 0.00 4.75
303 304 1.926511 GCCCATCTTCAACGTGCCTG 61.927 60.000 0.00 0.00 0.00 4.85
304 305 1.308069 CCCATCTTCAACGTGCCTGG 61.308 60.000 0.00 0.00 0.00 4.45
305 306 0.606401 CCATCTTCAACGTGCCTGGT 60.606 55.000 0.00 0.00 0.00 4.00
306 307 0.798776 CATCTTCAACGTGCCTGGTC 59.201 55.000 0.00 0.00 0.00 4.02
307 308 0.321653 ATCTTCAACGTGCCTGGTCC 60.322 55.000 0.00 0.00 0.00 4.46
308 309 1.227823 CTTCAACGTGCCTGGTCCA 60.228 57.895 0.00 0.00 0.00 4.02
309 310 0.606401 CTTCAACGTGCCTGGTCCAT 60.606 55.000 0.00 0.00 0.00 3.41
310 311 0.888736 TTCAACGTGCCTGGTCCATG 60.889 55.000 0.00 0.00 0.00 3.66
311 312 1.600636 CAACGTGCCTGGTCCATGT 60.601 57.895 0.00 0.00 34.08 3.21
312 313 1.302511 AACGTGCCTGGTCCATGTC 60.303 57.895 0.00 0.00 31.59 3.06
313 314 2.815211 CGTGCCTGGTCCATGTCG 60.815 66.667 0.00 0.00 0.00 4.35
314 315 3.127533 GTGCCTGGTCCATGTCGC 61.128 66.667 0.00 0.00 0.00 5.19
315 316 4.408821 TGCCTGGTCCATGTCGCC 62.409 66.667 0.00 0.00 0.00 5.54
317 318 4.838152 CCTGGTCCATGTCGCCGG 62.838 72.222 0.00 0.00 0.00 6.13
318 319 4.838152 CTGGTCCATGTCGCCGGG 62.838 72.222 2.18 0.00 0.00 5.73
320 321 3.463585 GGTCCATGTCGCCGGGTA 61.464 66.667 2.18 0.00 0.00 3.69
321 322 2.202837 GTCCATGTCGCCGGGTAC 60.203 66.667 2.18 0.00 0.00 3.34
322 323 2.680707 TCCATGTCGCCGGGTACA 60.681 61.111 2.18 6.78 0.00 2.90
323 324 2.510691 CCATGTCGCCGGGTACAC 60.511 66.667 2.18 0.00 0.00 2.90
324 325 2.510691 CATGTCGCCGGGTACACC 60.511 66.667 2.18 0.00 0.00 4.16
333 334 4.462280 GGGTACACCGCCGGGAAG 62.462 72.222 8.57 0.00 36.71 3.46
334 335 4.462280 GGTACACCGCCGGGAAGG 62.462 72.222 8.57 2.32 44.97 3.46
335 336 4.462280 GTACACCGCCGGGAAGGG 62.462 72.222 8.57 5.91 41.48 3.95
357 358 4.047059 TCGTCGCCCGACTCCAAC 62.047 66.667 17.39 0.00 41.60 3.77
359 360 4.047059 GTCGCCCGACTCCAACGA 62.047 66.667 13.10 0.00 41.57 3.85
360 361 3.744719 TCGCCCGACTCCAACGAG 61.745 66.667 0.00 0.00 42.32 4.18
361 362 4.796231 CGCCCGACTCCAACGAGG 62.796 72.222 0.00 0.00 40.77 4.63
362 363 4.452733 GCCCGACTCCAACGAGGG 62.453 72.222 0.00 0.00 44.72 4.30
363 364 3.771160 CCCGACTCCAACGAGGGG 61.771 72.222 0.00 0.00 46.61 4.79
364 365 2.678934 CCGACTCCAACGAGGGGA 60.679 66.667 5.56 0.31 42.25 4.81
365 366 2.058595 CCGACTCCAACGAGGGGAT 61.059 63.158 5.56 0.00 42.25 3.85
366 367 0.754217 CCGACTCCAACGAGGGGATA 60.754 60.000 5.56 0.00 42.25 2.59
367 368 0.384669 CGACTCCAACGAGGGGATAC 59.615 60.000 5.56 0.00 42.25 2.24
387 388 3.267900 GCTCTGGCGCGAGTATTAA 57.732 52.632 19.32 0.00 33.55 1.40
388 389 1.784525 GCTCTGGCGCGAGTATTAAT 58.215 50.000 19.32 0.00 33.55 1.40
389 390 2.942710 GCTCTGGCGCGAGTATTAATA 58.057 47.619 19.32 0.00 33.55 0.98
390 391 2.662156 GCTCTGGCGCGAGTATTAATAC 59.338 50.000 19.32 16.44 33.55 1.89
391 392 2.909244 CTCTGGCGCGAGTATTAATACG 59.091 50.000 19.32 9.88 38.28 3.06
392 393 1.983605 CTGGCGCGAGTATTAATACGG 59.016 52.381 12.10 14.94 38.28 4.02
393 394 1.336148 TGGCGCGAGTATTAATACGGG 60.336 52.381 12.10 15.93 38.28 5.28
394 395 1.343506 GCGCGAGTATTAATACGGGG 58.656 55.000 12.10 20.01 38.28 5.73
395 396 1.336240 GCGCGAGTATTAATACGGGGT 60.336 52.381 24.06 10.20 38.28 4.95
396 397 2.863704 GCGCGAGTATTAATACGGGGTT 60.864 50.000 24.06 9.92 38.28 4.11
397 398 3.383761 CGCGAGTATTAATACGGGGTTT 58.616 45.455 17.77 1.77 38.28 3.27
398 399 3.426525 CGCGAGTATTAATACGGGGTTTC 59.573 47.826 17.77 9.33 38.28 2.78
399 400 4.370917 GCGAGTATTAATACGGGGTTTCA 58.629 43.478 17.77 0.00 38.28 2.69
400 401 4.992951 GCGAGTATTAATACGGGGTTTCAT 59.007 41.667 17.77 0.00 38.28 2.57
401 402 5.467735 GCGAGTATTAATACGGGGTTTCATT 59.532 40.000 17.77 0.00 38.28 2.57
402 403 6.017687 GCGAGTATTAATACGGGGTTTCATTT 60.018 38.462 17.77 0.00 38.28 2.32
403 404 7.467675 GCGAGTATTAATACGGGGTTTCATTTT 60.468 37.037 17.77 0.00 38.28 1.82
404 405 7.853929 CGAGTATTAATACGGGGTTTCATTTTG 59.146 37.037 17.77 0.00 38.28 2.44
405 406 8.584063 AGTATTAATACGGGGTTTCATTTTGT 57.416 30.769 17.77 0.00 38.28 2.83
406 407 9.683870 AGTATTAATACGGGGTTTCATTTTGTA 57.316 29.630 17.77 0.00 38.28 2.41
409 410 8.577048 TTAATACGGGGTTTCATTTTGTATGA 57.423 30.769 0.00 0.00 0.00 2.15
410 411 7.654022 AATACGGGGTTTCATTTTGTATGAT 57.346 32.000 0.00 0.00 0.00 2.45
411 412 8.754991 AATACGGGGTTTCATTTTGTATGATA 57.245 30.769 0.00 0.00 0.00 2.15
412 413 8.934023 ATACGGGGTTTCATTTTGTATGATAT 57.066 30.769 0.00 0.00 0.00 1.63
413 414 7.038154 ACGGGGTTTCATTTTGTATGATATG 57.962 36.000 0.00 0.00 0.00 1.78
414 415 6.040391 ACGGGGTTTCATTTTGTATGATATGG 59.960 38.462 0.00 0.00 0.00 2.74
415 416 6.040391 CGGGGTTTCATTTTGTATGATATGGT 59.960 38.462 0.00 0.00 0.00 3.55
416 417 7.229707 CGGGGTTTCATTTTGTATGATATGGTA 59.770 37.037 0.00 0.00 0.00 3.25
417 418 8.919145 GGGGTTTCATTTTGTATGATATGGTAA 58.081 33.333 0.00 0.00 0.00 2.85
436 437 7.367159 TGGTAATACAACCACTTTCATAACG 57.633 36.000 0.00 0.00 44.68 3.18
437 438 7.160049 TGGTAATACAACCACTTTCATAACGA 58.840 34.615 0.00 0.00 44.68 3.85
438 439 7.825270 TGGTAATACAACCACTTTCATAACGAT 59.175 33.333 0.00 0.00 44.68 3.73
439 440 8.333186 GGTAATACAACCACTTTCATAACGATC 58.667 37.037 0.00 0.00 39.50 3.69
440 441 9.095065 GTAATACAACCACTTTCATAACGATCT 57.905 33.333 0.00 0.00 0.00 2.75
442 443 6.963049 ACAACCACTTTCATAACGATCTAC 57.037 37.500 0.00 0.00 0.00 2.59
443 444 6.698380 ACAACCACTTTCATAACGATCTACT 58.302 36.000 0.00 0.00 0.00 2.57
444 445 7.833786 ACAACCACTTTCATAACGATCTACTA 58.166 34.615 0.00 0.00 0.00 1.82
445 446 7.758528 ACAACCACTTTCATAACGATCTACTAC 59.241 37.037 0.00 0.00 0.00 2.73
446 447 6.493116 ACCACTTTCATAACGATCTACTACG 58.507 40.000 0.00 0.00 0.00 3.51
447 448 5.913514 CCACTTTCATAACGATCTACTACGG 59.086 44.000 0.00 0.00 0.00 4.02
448 449 6.459298 CCACTTTCATAACGATCTACTACGGT 60.459 42.308 0.00 0.00 0.00 4.83
449 450 6.971184 CACTTTCATAACGATCTACTACGGTT 59.029 38.462 0.00 0.00 0.00 4.44
450 451 8.124823 CACTTTCATAACGATCTACTACGGTTA 58.875 37.037 0.00 0.00 0.00 2.85
451 452 8.125448 ACTTTCATAACGATCTACTACGGTTAC 58.875 37.037 0.00 0.00 0.00 2.50
453 454 5.983118 TCATAACGATCTACTACGGTTACGA 59.017 40.000 0.00 0.00 44.60 3.43
454 455 6.478673 TCATAACGATCTACTACGGTTACGAA 59.521 38.462 0.00 0.00 44.60 3.85
455 456 4.785669 ACGATCTACTACGGTTACGAAG 57.214 45.455 0.00 0.00 44.60 3.79
456 457 3.557595 ACGATCTACTACGGTTACGAAGG 59.442 47.826 0.00 0.00 44.60 3.46
457 458 3.557595 CGATCTACTACGGTTACGAAGGT 59.442 47.826 0.00 0.00 44.60 3.50
458 459 4.551603 CGATCTACTACGGTTACGAAGGTG 60.552 50.000 0.00 0.00 44.60 4.00
459 460 3.009723 TCTACTACGGTTACGAAGGTGG 58.990 50.000 0.00 0.00 44.60 4.61
460 461 0.244721 ACTACGGTTACGAAGGTGGC 59.755 55.000 0.00 0.00 44.60 5.01
461 462 0.529378 CTACGGTTACGAAGGTGGCT 59.471 55.000 0.00 0.00 44.60 4.75
462 463 0.244450 TACGGTTACGAAGGTGGCTG 59.756 55.000 0.00 0.00 44.60 4.85
463 464 1.005394 CGGTTACGAAGGTGGCTGT 60.005 57.895 0.00 0.00 44.60 4.40
464 465 0.244450 CGGTTACGAAGGTGGCTGTA 59.756 55.000 0.00 0.00 44.60 2.74
465 466 1.134907 CGGTTACGAAGGTGGCTGTAT 60.135 52.381 0.00 0.00 44.60 2.29
466 467 2.675889 CGGTTACGAAGGTGGCTGTATT 60.676 50.000 0.00 0.00 44.60 1.89
467 468 3.429272 CGGTTACGAAGGTGGCTGTATTA 60.429 47.826 0.00 0.00 44.60 0.98
468 469 4.506758 GGTTACGAAGGTGGCTGTATTAA 58.493 43.478 0.00 0.00 0.00 1.40
469 470 4.330894 GGTTACGAAGGTGGCTGTATTAAC 59.669 45.833 0.00 0.00 0.00 2.01
470 471 2.613691 ACGAAGGTGGCTGTATTAACG 58.386 47.619 0.00 0.00 0.00 3.18
471 472 2.231964 ACGAAGGTGGCTGTATTAACGA 59.768 45.455 0.00 0.00 0.00 3.85
472 473 2.858344 CGAAGGTGGCTGTATTAACGAG 59.142 50.000 0.00 0.00 0.00 4.18
480 481 7.656137 AGGTGGCTGTATTAACGAGTATTAATG 59.344 37.037 0.00 0.00 35.88 1.90
541 543 6.370166 GCACTTAAGCACCTATCCATCTATTC 59.630 42.308 1.29 0.00 0.00 1.75
542 544 7.445121 CACTTAAGCACCTATCCATCTATTCA 58.555 38.462 1.29 0.00 0.00 2.57
666 961 0.684479 TCCCGTCCAGTCCAGAGATG 60.684 60.000 0.00 0.00 0.00 2.90
735 1030 0.678048 AGCGAAGGGAAGCCATGAAC 60.678 55.000 0.00 0.00 0.00 3.18
857 1153 1.686052 CCCTCGATTCTTCCTCTCCAG 59.314 57.143 0.00 0.00 0.00 3.86
858 1154 1.686052 CCTCGATTCTTCCTCTCCAGG 59.314 57.143 0.00 0.00 42.01 4.45
860 1156 0.826715 CGATTCTTCCTCTCCAGGCA 59.173 55.000 0.00 0.00 40.12 4.75
861 1157 1.415659 CGATTCTTCCTCTCCAGGCAT 59.584 52.381 0.00 0.00 40.12 4.40
877 1173 2.967014 ATCCCCACCCCTCCTCCT 60.967 66.667 0.00 0.00 0.00 3.69
890 1186 0.895530 TCCTCCTACAGTGCTTTCCG 59.104 55.000 0.00 0.00 0.00 4.30
900 1196 2.504681 GCTTTCCGGCGTGCATTG 60.505 61.111 6.01 0.00 0.00 2.82
1249 1563 2.423577 ACGGTGAAATTGACTGCTACC 58.576 47.619 0.00 0.00 0.00 3.18
1250 1564 1.737793 CGGTGAAATTGACTGCTACCC 59.262 52.381 0.00 0.00 0.00 3.69
1251 1565 2.615493 CGGTGAAATTGACTGCTACCCT 60.615 50.000 0.00 0.00 0.00 4.34
1252 1566 3.369052 CGGTGAAATTGACTGCTACCCTA 60.369 47.826 0.00 0.00 0.00 3.53
1253 1567 3.939592 GGTGAAATTGACTGCTACCCTAC 59.060 47.826 0.00 0.00 0.00 3.18
1306 1622 6.481434 AGGTACATATACAAGGACAAGACC 57.519 41.667 0.00 0.00 32.40 3.85
1381 1697 2.943036 ACCACACTTTACCGGATGTT 57.057 45.000 9.46 0.00 0.00 2.71
1408 1725 6.238869 GGGCTTTTCTGATTCACAGGATTATC 60.239 42.308 0.00 0.00 45.76 1.75
1414 1731 8.634335 TTCTGATTCACAGGATTATCAAAACA 57.366 30.769 0.00 0.00 45.76 2.83
1475 1792 5.164620 TGCACTATCATGTCCTCTTGAAA 57.835 39.130 0.00 0.00 32.81 2.69
1477 1794 5.181748 GCACTATCATGTCCTCTTGAAACT 58.818 41.667 0.00 0.00 32.81 2.66
1521 1839 6.071165 AGGAATTTGAATGGAAAAGTGCTAGG 60.071 38.462 0.00 0.00 32.62 3.02
1523 1841 5.705609 TTTGAATGGAAAAGTGCTAGGAC 57.294 39.130 6.22 6.22 0.00 3.85
1524 1842 4.640771 TGAATGGAAAAGTGCTAGGACT 57.359 40.909 11.67 11.67 0.00 3.85
1526 1844 2.859165 TGGAAAAGTGCTAGGACTGG 57.141 50.000 18.47 0.00 0.00 4.00
1528 1846 2.912956 TGGAAAAGTGCTAGGACTGGAT 59.087 45.455 18.47 7.09 0.00 3.41
1536 1854 5.876357 AGTGCTAGGACTGGATAAACAAAA 58.124 37.500 17.00 0.00 0.00 2.44
1559 1877 2.770164 TTCTACCAAGAGGCTTGAGC 57.230 50.000 8.64 0.00 39.06 4.26
1578 1896 4.522405 TGAGCGGATGAAAATTTTCCTTCA 59.478 37.500 24.51 13.90 36.36 3.02
1629 1947 9.147732 GGAATAATTCCTAAGGATTCCAATTGT 57.852 33.333 5.29 0.00 46.57 2.71
1634 1952 9.713684 AATTCCTAAGGATTCCAATTGTATGAA 57.286 29.630 5.29 1.44 0.00 2.57
1635 1953 9.887862 ATTCCTAAGGATTCCAATTGTATGAAT 57.112 29.630 5.29 6.42 0.00 2.57
1636 1954 8.924511 TCCTAAGGATTCCAATTGTATGAATC 57.075 34.615 19.58 19.58 42.22 2.52
1637 1955 8.501904 TCCTAAGGATTCCAATTGTATGAATCA 58.498 33.333 24.79 12.40 43.86 2.57
1638 1956 8.790718 CCTAAGGATTCCAATTGTATGAATCAG 58.209 37.037 24.79 17.75 43.86 2.90
1639 1957 9.565090 CTAAGGATTCCAATTGTATGAATCAGA 57.435 33.333 24.79 14.65 43.86 3.27
1640 1958 8.827832 AAGGATTCCAATTGTATGAATCAGAA 57.172 30.769 24.79 11.93 43.86 3.02
1641 1959 8.827832 AGGATTCCAATTGTATGAATCAGAAA 57.172 30.769 24.79 0.00 43.86 2.52
1642 1960 9.258629 AGGATTCCAATTGTATGAATCAGAAAA 57.741 29.630 24.79 0.00 43.86 2.29
1643 1961 9.874205 GGATTCCAATTGTATGAATCAGAAAAA 57.126 29.630 24.79 0.00 43.86 1.94
1669 1987 5.045012 TCCTGAGAATCCAAATCATCCAG 57.955 43.478 0.00 0.00 0.00 3.86
1670 1988 4.723285 TCCTGAGAATCCAAATCATCCAGA 59.277 41.667 0.00 0.00 0.00 3.86
1672 1990 6.069331 CCTGAGAATCCAAATCATCCAGAAT 58.931 40.000 0.00 0.00 0.00 2.40
1673 1991 6.550108 CCTGAGAATCCAAATCATCCAGAATT 59.450 38.462 0.00 0.00 0.00 2.17
1735 2058 1.604755 GTGTTTCATTGCACCCACGTA 59.395 47.619 0.00 0.00 0.00 3.57
1736 2059 1.876799 TGTTTCATTGCACCCACGTAG 59.123 47.619 0.00 0.00 0.00 3.51
1737 2060 2.147958 GTTTCATTGCACCCACGTAGA 58.852 47.619 0.00 0.00 0.00 2.59
1738 2061 1.803334 TTCATTGCACCCACGTAGAC 58.197 50.000 0.00 0.00 0.00 2.59
1739 2062 0.973632 TCATTGCACCCACGTAGACT 59.026 50.000 0.00 0.00 0.00 3.24
1740 2063 1.346395 TCATTGCACCCACGTAGACTT 59.654 47.619 0.00 0.00 0.00 3.01
1741 2064 1.464608 CATTGCACCCACGTAGACTTG 59.535 52.381 0.00 0.00 0.00 3.16
1742 2065 0.466543 TTGCACCCACGTAGACTTGT 59.533 50.000 0.00 0.00 0.00 3.16
1743 2066 0.032952 TGCACCCACGTAGACTTGTC 59.967 55.000 0.00 0.00 0.00 3.18
1744 2067 0.317479 GCACCCACGTAGACTTGTCT 59.683 55.000 8.41 8.41 0.00 3.41
1745 2068 1.542915 GCACCCACGTAGACTTGTCTA 59.457 52.381 6.41 6.41 0.00 2.59
1746 2069 2.670509 GCACCCACGTAGACTTGTCTAC 60.671 54.545 23.60 23.60 39.23 2.59
1747 2070 2.094854 CACCCACGTAGACTTGTCTACC 60.095 54.545 25.90 14.02 39.39 3.18
1748 2071 2.165167 CCCACGTAGACTTGTCTACCA 58.835 52.381 25.90 2.26 39.39 3.25
1749 2072 2.559668 CCCACGTAGACTTGTCTACCAA 59.440 50.000 25.90 1.94 39.39 3.67
1750 2073 3.006110 CCCACGTAGACTTGTCTACCAAA 59.994 47.826 25.90 1.61 39.39 3.28
1751 2074 4.501915 CCCACGTAGACTTGTCTACCAAAA 60.502 45.833 25.90 0.98 39.39 2.44
1752 2075 5.051816 CCACGTAGACTTGTCTACCAAAAA 58.948 41.667 25.90 0.35 39.39 1.94
1753 2076 5.699458 CCACGTAGACTTGTCTACCAAAAAT 59.301 40.000 25.90 9.53 39.39 1.82
1754 2077 6.347402 CCACGTAGACTTGTCTACCAAAAATG 60.347 42.308 25.90 16.49 39.39 2.32
1755 2078 6.422701 CACGTAGACTTGTCTACCAAAAATGA 59.577 38.462 25.90 0.00 39.39 2.57
1756 2079 7.117812 CACGTAGACTTGTCTACCAAAAATGAT 59.882 37.037 25.90 6.49 39.39 2.45
1757 2080 8.308931 ACGTAGACTTGTCTACCAAAAATGATA 58.691 33.333 25.90 0.00 39.39 2.15
1758 2081 9.146984 CGTAGACTTGTCTACCAAAAATGATAA 57.853 33.333 25.90 0.00 39.39 1.75
1761 2084 9.349713 AGACTTGTCTACCAAAAATGATAAACA 57.650 29.630 0.89 0.00 31.20 2.83
1762 2085 9.394477 GACTTGTCTACCAAAAATGATAAACAC 57.606 33.333 0.00 0.00 31.20 3.32
1763 2086 8.908903 ACTTGTCTACCAAAAATGATAAACACA 58.091 29.630 0.00 0.00 31.20 3.72
1764 2087 9.180678 CTTGTCTACCAAAAATGATAAACACAC 57.819 33.333 0.00 0.00 31.20 3.82
1765 2088 8.226819 TGTCTACCAAAAATGATAAACACACA 57.773 30.769 0.00 0.00 0.00 3.72
1766 2089 8.855110 TGTCTACCAAAAATGATAAACACACAT 58.145 29.630 0.00 0.00 0.00 3.21
1767 2090 9.128107 GTCTACCAAAAATGATAAACACACATG 57.872 33.333 0.00 0.00 0.00 3.21
1768 2091 6.783892 ACCAAAAATGATAAACACACATGC 57.216 33.333 0.00 0.00 0.00 4.06
1769 2092 5.404968 ACCAAAAATGATAAACACACATGCG 59.595 36.000 0.00 0.00 0.00 4.73
1770 2093 5.404968 CCAAAAATGATAAACACACATGCGT 59.595 36.000 0.00 0.00 0.00 5.24
1771 2094 6.073873 CCAAAAATGATAAACACACATGCGTT 60.074 34.615 0.00 0.00 0.00 4.84
1772 2095 7.343691 CAAAAATGATAAACACACATGCGTTT 58.656 30.769 11.73 11.73 38.76 3.60
1773 2096 7.475771 AAAATGATAAACACACATGCGTTTT 57.524 28.000 12.14 6.55 36.72 2.43
1774 2097 8.581057 AAAATGATAAACACACATGCGTTTTA 57.419 26.923 12.14 8.11 36.72 1.52
1775 2098 7.561237 AATGATAAACACACATGCGTTTTAC 57.439 32.000 12.14 8.48 36.72 2.01
1776 2099 5.140872 TGATAAACACACATGCGTTTTACG 58.859 37.500 12.14 0.00 45.88 3.18
1777 2100 2.392933 AACACACATGCGTTTTACGG 57.607 45.000 0.00 0.00 42.82 4.02
1778 2101 0.589223 ACACACATGCGTTTTACGGG 59.411 50.000 0.00 0.00 42.82 5.28
1779 2102 0.109964 CACACATGCGTTTTACGGGG 60.110 55.000 0.00 0.00 42.82 5.73
1780 2103 1.154112 CACATGCGTTTTACGGGGC 60.154 57.895 0.00 0.00 42.82 5.80
1781 2104 1.302993 ACATGCGTTTTACGGGGCT 60.303 52.632 0.00 0.00 42.82 5.19
1782 2105 1.136565 CATGCGTTTTACGGGGCTG 59.863 57.895 1.14 0.00 42.82 4.85
1783 2106 1.302993 ATGCGTTTTACGGGGCTGT 60.303 52.632 1.14 0.00 42.82 4.40
1784 2107 0.891904 ATGCGTTTTACGGGGCTGTT 60.892 50.000 1.14 0.00 42.82 3.16
1785 2108 0.250209 TGCGTTTTACGGGGCTGTTA 60.250 50.000 1.14 0.00 42.82 2.41
1786 2109 1.089112 GCGTTTTACGGGGCTGTTAT 58.911 50.000 1.14 0.00 42.82 1.89
1787 2110 1.202098 GCGTTTTACGGGGCTGTTATG 60.202 52.381 1.14 0.00 42.82 1.90
1788 2111 1.399089 CGTTTTACGGGGCTGTTATGG 59.601 52.381 0.00 0.00 38.08 2.74
1789 2112 1.746787 GTTTTACGGGGCTGTTATGGG 59.253 52.381 0.00 0.00 0.00 4.00
1790 2113 1.287217 TTTACGGGGCTGTTATGGGA 58.713 50.000 0.00 0.00 0.00 4.37
1791 2114 0.542805 TTACGGGGCTGTTATGGGAC 59.457 55.000 0.00 0.00 0.00 4.46
1792 2115 0.325860 TACGGGGCTGTTATGGGACT 60.326 55.000 0.00 0.00 0.00 3.85
1793 2116 1.205460 ACGGGGCTGTTATGGGACTT 61.205 55.000 0.00 0.00 0.00 3.01
1794 2117 0.834612 CGGGGCTGTTATGGGACTTA 59.165 55.000 0.00 0.00 0.00 2.24
1795 2118 1.474498 CGGGGCTGTTATGGGACTTAC 60.474 57.143 0.00 0.00 0.00 2.34
1796 2119 1.133884 GGGGCTGTTATGGGACTTACC 60.134 57.143 0.00 0.00 38.08 2.85
1797 2120 1.562475 GGGCTGTTATGGGACTTACCA 59.438 52.381 0.00 0.00 46.24 3.25
1809 2132 6.248569 TGGGACTTACCATAAAATCTCTCC 57.751 41.667 0.00 0.00 41.20 3.71
1810 2133 5.729229 TGGGACTTACCATAAAATCTCTCCA 59.271 40.000 0.00 0.00 41.20 3.86
1811 2134 6.056236 GGGACTTACCATAAAATCTCTCCAC 58.944 44.000 0.00 0.00 41.20 4.02
1812 2135 6.056236 GGACTTACCATAAAATCTCTCCACC 58.944 44.000 0.00 0.00 38.79 4.61
1813 2136 5.671493 ACTTACCATAAAATCTCTCCACCG 58.329 41.667 0.00 0.00 0.00 4.94
1814 2137 2.919228 ACCATAAAATCTCTCCACCGC 58.081 47.619 0.00 0.00 0.00 5.68
1815 2138 1.867233 CCATAAAATCTCTCCACCGCG 59.133 52.381 0.00 0.00 0.00 6.46
1816 2139 1.867233 CATAAAATCTCTCCACCGCGG 59.133 52.381 26.86 26.86 0.00 6.46
1817 2140 0.177141 TAAAATCTCTCCACCGCGGG 59.823 55.000 31.76 18.27 34.36 6.13
1818 2141 2.536997 AAAATCTCTCCACCGCGGGG 62.537 60.000 31.76 28.14 36.02 5.73
1836 2159 2.941583 GGTGGGCCCCTTTCTCCT 60.942 66.667 22.27 0.00 0.00 3.69
1837 2160 2.677848 GTGGGCCCCTTTCTCCTC 59.322 66.667 22.27 0.00 0.00 3.71
1838 2161 2.614013 TGGGCCCCTTTCTCCTCC 60.614 66.667 22.27 0.00 0.00 4.30
1839 2162 2.286502 GGGCCCCTTTCTCCTCCT 60.287 66.667 12.23 0.00 0.00 3.69
1840 2163 1.004361 GGGCCCCTTTCTCCTCCTA 59.996 63.158 12.23 0.00 0.00 2.94
1841 2164 0.623617 GGGCCCCTTTCTCCTCCTAA 60.624 60.000 12.23 0.00 0.00 2.69
1842 2165 1.524037 GGCCCCTTTCTCCTCCTAAT 58.476 55.000 0.00 0.00 0.00 1.73
1843 2166 1.422024 GGCCCCTTTCTCCTCCTAATC 59.578 57.143 0.00 0.00 0.00 1.75
1844 2167 1.422024 GCCCCTTTCTCCTCCTAATCC 59.578 57.143 0.00 0.00 0.00 3.01
1845 2168 2.776665 CCCCTTTCTCCTCCTAATCCA 58.223 52.381 0.00 0.00 0.00 3.41
1846 2169 3.123273 CCCCTTTCTCCTCCTAATCCAA 58.877 50.000 0.00 0.00 0.00 3.53
1847 2170 3.724209 CCCCTTTCTCCTCCTAATCCAAT 59.276 47.826 0.00 0.00 0.00 3.16
1848 2171 4.446889 CCCCTTTCTCCTCCTAATCCAATG 60.447 50.000 0.00 0.00 0.00 2.82
1849 2172 4.413520 CCCTTTCTCCTCCTAATCCAATGA 59.586 45.833 0.00 0.00 0.00 2.57
1850 2173 5.103940 CCCTTTCTCCTCCTAATCCAATGAA 60.104 44.000 0.00 0.00 0.00 2.57
1851 2174 6.426587 CCTTTCTCCTCCTAATCCAATGAAA 58.573 40.000 0.00 0.00 0.00 2.69
1852 2175 6.891908 CCTTTCTCCTCCTAATCCAATGAAAA 59.108 38.462 0.00 0.00 0.00 2.29
1853 2176 7.397192 CCTTTCTCCTCCTAATCCAATGAAAAA 59.603 37.037 0.00 0.00 0.00 1.94
1854 2177 7.703058 TTCTCCTCCTAATCCAATGAAAAAC 57.297 36.000 0.00 0.00 0.00 2.43
1855 2178 7.032598 TCTCCTCCTAATCCAATGAAAAACT 57.967 36.000 0.00 0.00 0.00 2.66
1856 2179 6.886459 TCTCCTCCTAATCCAATGAAAAACTG 59.114 38.462 0.00 0.00 0.00 3.16
1857 2180 5.418840 TCCTCCTAATCCAATGAAAAACTGC 59.581 40.000 0.00 0.00 0.00 4.40
1858 2181 5.394553 CCTCCTAATCCAATGAAAAACTGCC 60.395 44.000 0.00 0.00 0.00 4.85
1859 2182 5.083122 TCCTAATCCAATGAAAAACTGCCA 58.917 37.500 0.00 0.00 0.00 4.92
1860 2183 5.185635 TCCTAATCCAATGAAAAACTGCCAG 59.814 40.000 0.00 0.00 0.00 4.85
1861 2184 2.818130 TCCAATGAAAAACTGCCAGC 57.182 45.000 0.00 0.00 0.00 4.85
1862 2185 2.318908 TCCAATGAAAAACTGCCAGCT 58.681 42.857 0.00 0.00 0.00 4.24
1863 2186 3.495331 TCCAATGAAAAACTGCCAGCTA 58.505 40.909 0.00 0.00 0.00 3.32
1864 2187 3.894427 TCCAATGAAAAACTGCCAGCTAA 59.106 39.130 0.00 0.00 0.00 3.09
1865 2188 4.343526 TCCAATGAAAAACTGCCAGCTAAA 59.656 37.500 0.00 0.00 0.00 1.85
1866 2189 4.687483 CCAATGAAAAACTGCCAGCTAAAG 59.313 41.667 0.00 0.00 0.00 1.85
1867 2190 5.509501 CCAATGAAAAACTGCCAGCTAAAGA 60.510 40.000 0.00 0.00 0.00 2.52
1868 2191 5.990120 ATGAAAAACTGCCAGCTAAAGAT 57.010 34.783 0.00 0.00 0.00 2.40
1869 2192 5.376854 TGAAAAACTGCCAGCTAAAGATC 57.623 39.130 0.00 0.00 0.00 2.75
1870 2193 4.826733 TGAAAAACTGCCAGCTAAAGATCA 59.173 37.500 0.00 0.00 0.00 2.92
1871 2194 5.048504 TGAAAAACTGCCAGCTAAAGATCAG 60.049 40.000 0.00 0.00 0.00 2.90
1872 2195 2.035530 ACTGCCAGCTAAAGATCAGC 57.964 50.000 0.00 0.00 39.41 4.26
1874 2197 2.211806 CTGCCAGCTAAAGATCAGCTC 58.788 52.381 3.15 0.00 46.37 4.09
1875 2198 1.216122 GCCAGCTAAAGATCAGCTCG 58.784 55.000 3.15 0.00 46.37 5.03
1876 2199 1.472376 GCCAGCTAAAGATCAGCTCGT 60.472 52.381 3.15 0.00 46.37 4.18
1877 2200 2.223829 GCCAGCTAAAGATCAGCTCGTA 60.224 50.000 3.15 0.00 46.37 3.43
1878 2201 3.738281 GCCAGCTAAAGATCAGCTCGTAA 60.738 47.826 3.15 0.00 46.37 3.18
1879 2202 4.626042 CCAGCTAAAGATCAGCTCGTAAT 58.374 43.478 3.15 0.00 46.37 1.89
1880 2203 4.683781 CCAGCTAAAGATCAGCTCGTAATC 59.316 45.833 3.15 0.00 46.37 1.75
1881 2204 4.683781 CAGCTAAAGATCAGCTCGTAATCC 59.316 45.833 3.15 0.00 46.37 3.01
1882 2205 4.586841 AGCTAAAGATCAGCTCGTAATCCT 59.413 41.667 0.30 0.00 46.37 3.24
1883 2206 5.069781 AGCTAAAGATCAGCTCGTAATCCTT 59.930 40.000 0.30 0.00 46.37 3.36
1884 2207 6.265649 AGCTAAAGATCAGCTCGTAATCCTTA 59.734 38.462 0.30 0.00 46.37 2.69
1885 2208 6.924060 GCTAAAGATCAGCTCGTAATCCTTAA 59.076 38.462 0.00 0.00 36.07 1.85
1886 2209 7.115663 GCTAAAGATCAGCTCGTAATCCTTAAG 59.884 40.741 0.00 0.00 36.07 1.85
1887 2210 6.472686 AAGATCAGCTCGTAATCCTTAAGT 57.527 37.500 0.97 0.00 0.00 2.24
1888 2211 7.584122 AAGATCAGCTCGTAATCCTTAAGTA 57.416 36.000 0.97 0.00 0.00 2.24
1889 2212 7.584122 AGATCAGCTCGTAATCCTTAAGTAA 57.416 36.000 0.97 0.00 0.00 2.24
1890 2213 7.427214 AGATCAGCTCGTAATCCTTAAGTAAC 58.573 38.462 0.97 0.00 0.00 2.50
1891 2214 6.770746 TCAGCTCGTAATCCTTAAGTAACT 57.229 37.500 0.97 0.00 0.00 2.24
1892 2215 6.793349 TCAGCTCGTAATCCTTAAGTAACTC 58.207 40.000 0.97 0.00 0.00 3.01
1893 2216 6.602406 TCAGCTCGTAATCCTTAAGTAACTCT 59.398 38.462 0.97 0.00 0.00 3.24
1894 2217 6.913673 CAGCTCGTAATCCTTAAGTAACTCTC 59.086 42.308 0.97 0.00 0.00 3.20
1895 2218 6.039605 AGCTCGTAATCCTTAAGTAACTCTCC 59.960 42.308 0.97 0.00 0.00 3.71
1896 2219 6.369059 TCGTAATCCTTAAGTAACTCTCCG 57.631 41.667 0.97 0.00 0.00 4.63
1897 2220 5.882557 TCGTAATCCTTAAGTAACTCTCCGT 59.117 40.000 0.97 0.00 0.00 4.69
1898 2221 6.375455 TCGTAATCCTTAAGTAACTCTCCGTT 59.625 38.462 0.97 0.00 39.64 4.44
1899 2222 6.471519 CGTAATCCTTAAGTAACTCTCCGTTG 59.528 42.308 0.97 0.00 37.05 4.10
1900 2223 6.600882 AATCCTTAAGTAACTCTCCGTTGA 57.399 37.500 0.97 0.00 37.05 3.18
1901 2224 6.793505 ATCCTTAAGTAACTCTCCGTTGAT 57.206 37.500 0.97 0.00 37.05 2.57
1902 2225 5.962433 TCCTTAAGTAACTCTCCGTTGATG 58.038 41.667 0.97 0.00 37.05 3.07
1903 2226 5.479375 TCCTTAAGTAACTCTCCGTTGATGT 59.521 40.000 0.97 0.00 37.05 3.06
1904 2227 6.660521 TCCTTAAGTAACTCTCCGTTGATGTA 59.339 38.462 0.97 0.00 37.05 2.29
1905 2228 6.973474 CCTTAAGTAACTCTCCGTTGATGTAG 59.027 42.308 0.97 0.00 37.05 2.74
1906 2229 4.373348 AGTAACTCTCCGTTGATGTAGC 57.627 45.455 0.00 0.00 37.05 3.58
1907 2230 3.762288 AGTAACTCTCCGTTGATGTAGCA 59.238 43.478 0.00 0.00 37.05 3.49
1908 2231 3.895232 AACTCTCCGTTGATGTAGCAT 57.105 42.857 0.00 0.00 33.72 3.79
1909 2232 3.895232 ACTCTCCGTTGATGTAGCATT 57.105 42.857 0.00 0.00 0.00 3.56
1910 2233 3.525537 ACTCTCCGTTGATGTAGCATTG 58.474 45.455 0.00 0.00 0.00 2.82
1911 2234 3.055819 ACTCTCCGTTGATGTAGCATTGT 60.056 43.478 0.00 0.00 0.00 2.71
1912 2235 3.935203 CTCTCCGTTGATGTAGCATTGTT 59.065 43.478 0.00 0.00 0.00 2.83
1913 2236 3.684305 TCTCCGTTGATGTAGCATTGTTG 59.316 43.478 0.00 0.00 0.00 3.33
1941 2276 1.427368 TCTTACCCCACTTGCCATTGT 59.573 47.619 0.00 0.00 0.00 2.71
1983 2318 5.281693 GCCAATTTAGCCATCACAAAAAC 57.718 39.130 0.00 0.00 0.00 2.43
2021 2358 3.508744 AAAACTGTGGCTTCACTTGTG 57.491 42.857 0.00 0.00 41.73 3.33
2045 4401 4.693283 CACAAAAGTGAGGTAGAGTGTGA 58.307 43.478 0.00 0.00 37.84 3.58
2046 4402 4.508124 CACAAAAGTGAGGTAGAGTGTGAC 59.492 45.833 0.00 0.00 37.84 3.67
2058 4414 2.954318 AGAGTGTGACAAGCAAGCAAAT 59.046 40.909 0.00 0.00 0.00 2.32
2074 4430 3.216147 CAAATCCGTTGCCCTTGTTAG 57.784 47.619 0.00 0.00 0.00 2.34
2085 4441 4.079253 TGCCCTTGTTAGTCCTCATTTTC 58.921 43.478 0.00 0.00 0.00 2.29
2086 4442 4.202567 TGCCCTTGTTAGTCCTCATTTTCT 60.203 41.667 0.00 0.00 0.00 2.52
2087 4443 4.396478 GCCCTTGTTAGTCCTCATTTTCTC 59.604 45.833 0.00 0.00 0.00 2.87
2088 4444 4.631813 CCCTTGTTAGTCCTCATTTTCTCG 59.368 45.833 0.00 0.00 0.00 4.04
2091 4447 4.495422 TGTTAGTCCTCATTTTCTCGCTC 58.505 43.478 0.00 0.00 0.00 5.03
2092 4448 4.021456 TGTTAGTCCTCATTTTCTCGCTCA 60.021 41.667 0.00 0.00 0.00 4.26
2093 4449 2.966050 AGTCCTCATTTTCTCGCTCAC 58.034 47.619 0.00 0.00 0.00 3.51
2105 4462 1.195448 CTCGCTCACACATGGTTTGTC 59.805 52.381 0.00 0.00 36.00 3.18
2110 4467 2.611751 CTCACACATGGTTTGTCGACAA 59.388 45.455 26.53 26.53 36.00 3.18
2112 4469 3.064682 TCACACATGGTTTGTCGACAAAG 59.935 43.478 37.00 27.96 45.36 2.77
2117 4474 4.156922 ACATGGTTTGTCGACAAAGTTTCA 59.843 37.500 37.00 29.81 45.36 2.69
2127 4484 1.064017 ACAAAGTTTCAGTCAGCCCCA 60.064 47.619 0.00 0.00 0.00 4.96
2133 4490 4.479158 AGTTTCAGTCAGCCCCAATTTTA 58.521 39.130 0.00 0.00 0.00 1.52
2146 4503 5.304357 GCCCCAATTTTATAGCCATGTACTT 59.696 40.000 0.00 0.00 0.00 2.24
2157 4514 2.096218 GCCATGTACTTTATAGCTGCGC 60.096 50.000 0.00 0.00 0.00 6.09
2183 4540 8.848474 CAATTAATTTGGATCCGAGGTAGTAT 57.152 34.615 7.39 0.00 0.00 2.12
2231 4588 8.948631 AAATATAGTCAACATCGTCTGTGATT 57.051 30.769 0.00 0.00 38.39 2.57
2238 4595 0.179000 ATCGTCTGTGATTCTGGGGC 59.821 55.000 0.00 0.00 0.00 5.80
2244 4601 3.135530 GTCTGTGATTCTGGGGCTCTAAT 59.864 47.826 0.00 0.00 0.00 1.73
2248 4605 6.101734 TCTGTGATTCTGGGGCTCTAATTTAT 59.898 38.462 0.00 0.00 0.00 1.40
2255 4612 7.304497 TCTGGGGCTCTAATTTATCTACTTC 57.696 40.000 0.00 0.00 0.00 3.01
2256 4613 7.076446 TCTGGGGCTCTAATTTATCTACTTCT 58.924 38.462 0.00 0.00 0.00 2.85
2366 4867 8.420374 AAATATGGTAGAATGAGTGTTGTACG 57.580 34.615 0.00 0.00 30.84 3.67
2376 4877 1.140252 AGTGTTGTACGGTTCTTGGCT 59.860 47.619 0.00 0.00 0.00 4.75
2414 5136 8.591940 TGTCATTCATTTTCATATTCCAACCAA 58.408 29.630 0.00 0.00 0.00 3.67
2418 5140 6.934056 TCATTTTCATATTCCAACCAACTGG 58.066 36.000 0.00 0.00 42.17 4.00
2468 5190 1.563410 CCCAAGAGAAGATTCAGGCCT 59.437 52.381 0.00 0.00 0.00 5.19
2585 5307 5.828328 AGTTGAACCCTACAAGAAGAAAAGG 59.172 40.000 0.00 0.00 0.00 3.11
2730 5500 1.946768 GCTTTGCCTATTGGTATCGCA 59.053 47.619 0.00 0.00 35.27 5.10
2733 5503 3.275617 TTGCCTATTGGTATCGCAGTT 57.724 42.857 0.00 0.00 35.27 3.16
2736 5506 2.484770 GCCTATTGGTATCGCAGTTGGA 60.485 50.000 0.00 0.00 35.27 3.53
2786 5556 6.959904 TCTACCTGAACAGTGTCTACTAGAT 58.040 40.000 0.00 0.00 34.74 1.98
2889 5664 3.039011 ACCTCTGTATACATGGGTGGTC 58.961 50.000 21.57 0.00 32.28 4.02
2890 5665 3.038280 CCTCTGTATACATGGGTGGTCA 58.962 50.000 5.91 0.00 0.00 4.02
2891 5666 3.648067 CCTCTGTATACATGGGTGGTCAT 59.352 47.826 5.91 0.00 0.00 3.06
2892 5667 4.838423 CCTCTGTATACATGGGTGGTCATA 59.162 45.833 5.91 0.00 0.00 2.15
2893 5668 5.485353 CCTCTGTATACATGGGTGGTCATAT 59.515 44.000 5.91 0.00 0.00 1.78
2894 5669 6.667848 CCTCTGTATACATGGGTGGTCATATA 59.332 42.308 5.91 0.00 0.00 0.86
2895 5670 7.147828 CCTCTGTATACATGGGTGGTCATATAG 60.148 44.444 5.91 0.00 0.00 1.31
2896 5671 7.475299 TCTGTATACATGGGTGGTCATATAGA 58.525 38.462 5.91 0.00 0.00 1.98
2897 5672 8.122481 TCTGTATACATGGGTGGTCATATAGAT 58.878 37.037 5.91 0.00 0.00 1.98
2905 5680 7.661536 TGGGTGGTCATATAGATTATAGAGC 57.338 40.000 0.00 0.00 0.00 4.09
2914 5689 9.605275 TCATATAGATTATAGAGCATGTTTGGC 57.395 33.333 0.00 0.00 0.00 4.52
2984 5759 5.379732 TTTTGACTTCTGTTCGGTTGTTT 57.620 34.783 0.00 0.00 0.00 2.83
2985 5760 5.379732 TTTGACTTCTGTTCGGTTGTTTT 57.620 34.783 0.00 0.00 0.00 2.43
3008 5790 5.975693 TTGTGAAAAGTGTCTGAAGGTTT 57.024 34.783 0.00 0.00 0.00 3.27
3072 5854 1.000274 GTTGCCCATTTGTGAGGTGAC 60.000 52.381 0.00 0.00 0.00 3.67
3168 5975 4.275936 GGTACGAATAATCTGCCAATTGCT 59.724 41.667 0.00 0.00 42.00 3.91
3175 5982 7.325338 CGAATAATCTGCCAATTGCTTGATAAG 59.675 37.037 0.00 0.00 42.00 1.73
3177 5984 5.927281 ATCTGCCAATTGCTTGATAAGTT 57.073 34.783 0.00 0.00 42.00 2.66
3191 5998 7.604164 TGCTTGATAAGTTCTTCCTCTGTAAAG 59.396 37.037 0.00 0.00 0.00 1.85
3220 6065 1.772836 AGCGTTTACGGAGGGAGTAT 58.227 50.000 4.29 0.00 40.23 2.12
3231 6076 2.678336 GGAGGGAGTATTTGTGAAAGCG 59.322 50.000 0.00 0.00 0.00 4.68
3247 6092 4.151689 TGAAAGCGAAATCACGGTCTTAAG 59.848 41.667 0.00 0.00 43.02 1.85
3261 6106 4.277423 CGGTCTTAAGTTTCAACCCATTGT 59.723 41.667 1.63 0.00 37.11 2.71
3302 6152 0.037697 TGGGCATCTCGTGTACACAC 60.038 55.000 24.98 2.41 43.15 3.82
3313 6163 4.367023 TACACACGCCGCTGGGAC 62.367 66.667 0.00 0.00 34.06 4.46
3356 6206 3.119495 GGAAAACAGGTGCGCATCTAAAT 60.119 43.478 25.31 9.29 0.00 1.40
3363 6213 4.922692 CAGGTGCGCATCTAAATTGAAAAA 59.077 37.500 25.31 0.00 0.00 1.94
3370 6220 5.444350 CGCATCTAAATTGAAAAATTGCGCA 60.444 36.000 5.66 5.66 34.32 6.09
3375 6225 8.581057 TCTAAATTGAAAAATTGCGCAGTAAA 57.419 26.923 11.31 0.00 34.63 2.01
3380 6230 4.915085 TGAAAAATTGCGCAGTAAAGCTAC 59.085 37.500 11.31 0.00 34.63 3.58
3384 6234 1.904144 TGCGCAGTAAAGCTACGTAG 58.096 50.000 18.47 18.47 36.41 3.51
3416 6266 2.294979 CAGCTGCTCATTGCCATTCTA 58.705 47.619 0.00 0.00 42.00 2.10
3441 6291 2.433868 AGTGCGACACTGTTTCGTAT 57.566 45.000 16.55 2.05 43.63 3.06
3453 6303 8.145316 ACACTGTTTCGTATAAAAAGCAAGTA 57.855 30.769 0.00 0.00 0.00 2.24
3496 7743 5.069914 ACAACAATACAAAAAGAAGGGGGTC 59.930 40.000 0.00 0.00 0.00 4.46
3498 7745 4.156477 CAATACAAAAAGAAGGGGGTCCA 58.844 43.478 0.00 0.00 34.83 4.02
3509 7756 1.152756 GGGGTCCACAACAACAGCT 60.153 57.895 0.00 0.00 0.00 4.24
3514 7761 2.929398 GGTCCACAACAACAGCTTTTTG 59.071 45.455 3.66 3.66 0.00 2.44
3516 7763 3.993736 GTCCACAACAACAGCTTTTTGTT 59.006 39.130 14.80 14.80 45.90 2.83
3519 7766 5.866633 TCCACAACAACAGCTTTTTGTTAAG 59.133 36.000 18.53 14.46 43.71 1.85
3525 7772 6.555315 ACAACAGCTTTTTGTTAAGTGAGAG 58.445 36.000 4.86 0.00 39.17 3.20
3564 7824 2.480419 CCTGTCCAACTAAAGACTTGCG 59.520 50.000 0.00 0.00 34.02 4.85
3611 7871 8.964476 TTCAATGACTCCTAGAACCAATATTC 57.036 34.615 0.00 0.00 0.00 1.75
3613 7873 7.127186 TCAATGACTCCTAGAACCAATATTCCA 59.873 37.037 0.00 0.00 0.00 3.53
3673 7933 6.761242 GCAAAGACCTTAAAAACAAGACCAAT 59.239 34.615 0.00 0.00 0.00 3.16
3674 7934 7.923878 GCAAAGACCTTAAAAACAAGACCAATA 59.076 33.333 0.00 0.00 0.00 1.90
3767 8027 7.653311 AGAATGGTTTTAATCAGTTTCACAAGC 59.347 33.333 0.00 0.00 0.00 4.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
90 91 4.954970 ACCCAACAGCCACGCCAG 62.955 66.667 0.00 0.00 0.00 4.85
99 100 1.898574 AAAGGAGCGCACCCAACAG 60.899 57.895 20.91 0.00 0.00 3.16
100 101 2.192861 CAAAGGAGCGCACCCAACA 61.193 57.895 20.91 0.00 0.00 3.33
101 102 2.644992 CAAAGGAGCGCACCCAAC 59.355 61.111 20.91 0.00 0.00 3.77
102 103 3.294493 GCAAAGGAGCGCACCCAA 61.294 61.111 20.91 0.00 0.00 4.12
105 106 4.043200 GTGGCAAAGGAGCGCACC 62.043 66.667 16.88 16.88 32.86 5.01
106 107 4.043200 GGTGGCAAAGGAGCGCAC 62.043 66.667 11.47 1.97 35.98 5.34
159 160 3.411351 CGTTCTTGGGCGGACACG 61.411 66.667 0.00 0.00 44.63 4.49
160 161 3.723348 GCGTTCTTGGGCGGACAC 61.723 66.667 0.00 0.00 0.00 3.67
187 188 3.767230 CAACCACGACAGCGAGCG 61.767 66.667 0.00 0.00 41.64 5.03
188 189 2.658707 GACAACCACGACAGCGAGC 61.659 63.158 0.00 0.00 41.64 5.03
189 190 0.667487 ATGACAACCACGACAGCGAG 60.667 55.000 0.00 0.00 41.64 5.03
190 191 0.943835 CATGACAACCACGACAGCGA 60.944 55.000 0.00 0.00 41.64 4.93
191 192 1.492873 CATGACAACCACGACAGCG 59.507 57.895 0.00 0.00 44.79 5.18
192 193 0.884704 ACCATGACAACCACGACAGC 60.885 55.000 0.00 0.00 0.00 4.40
193 194 1.148310 GACCATGACAACCACGACAG 58.852 55.000 0.00 0.00 0.00 3.51
194 195 0.250124 GGACCATGACAACCACGACA 60.250 55.000 0.00 0.00 0.00 4.35
195 196 0.953960 GGGACCATGACAACCACGAC 60.954 60.000 0.00 0.00 0.00 4.34
196 197 1.125093 AGGGACCATGACAACCACGA 61.125 55.000 0.00 0.00 0.00 4.35
197 198 0.250727 AAGGGACCATGACAACCACG 60.251 55.000 0.00 0.00 0.00 4.94
198 199 1.534729 GAAGGGACCATGACAACCAC 58.465 55.000 0.00 0.00 0.00 4.16
199 200 0.036164 CGAAGGGACCATGACAACCA 59.964 55.000 0.00 0.00 0.00 3.67
200 201 0.323629 TCGAAGGGACCATGACAACC 59.676 55.000 0.00 0.00 0.00 3.77
201 202 1.439679 GTCGAAGGGACCATGACAAC 58.560 55.000 0.00 0.00 39.90 3.32
202 203 3.927555 GTCGAAGGGACCATGACAA 57.072 52.632 0.00 0.00 39.90 3.18
210 211 4.754667 GGTGGCGGTCGAAGGGAC 62.755 72.222 0.00 0.00 45.31 4.46
218 219 4.367023 TACAGCACGGTGGCGGTC 62.367 66.667 10.60 0.00 41.28 4.79
219 220 4.373116 CTACAGCACGGTGGCGGT 62.373 66.667 10.60 11.06 44.32 5.68
220 221 4.063967 TCTACAGCACGGTGGCGG 62.064 66.667 10.60 5.80 39.27 6.13
221 222 2.809601 GTCTACAGCACGGTGGCG 60.810 66.667 10.60 2.46 39.27 5.69
222 223 2.434359 GGTCTACAGCACGGTGGC 60.434 66.667 10.60 2.41 0.00 5.01
223 224 2.126071 CGGTCTACAGCACGGTGG 60.126 66.667 10.60 0.00 0.00 4.61
224 225 1.733041 CACGGTCTACAGCACGGTG 60.733 63.158 3.15 3.15 38.33 4.94
225 226 2.649034 CACGGTCTACAGCACGGT 59.351 61.111 0.00 0.00 0.00 4.83
226 227 2.126071 CCACGGTCTACAGCACGG 60.126 66.667 0.00 0.00 0.00 4.94
227 228 2.809601 GCCACGGTCTACAGCACG 60.810 66.667 0.00 0.00 0.00 5.34
228 229 1.738099 CTGCCACGGTCTACAGCAC 60.738 63.158 0.00 0.00 0.00 4.40
229 230 2.656646 CTGCCACGGTCTACAGCA 59.343 61.111 0.00 0.00 0.00 4.41
231 232 2.125512 GGCTGCCACGGTCTACAG 60.126 66.667 15.17 0.00 0.00 2.74
232 233 3.702048 GGGCTGCCACGGTCTACA 61.702 66.667 22.05 0.00 0.00 2.74
233 234 4.814294 CGGGCTGCCACGGTCTAC 62.814 72.222 22.05 0.00 0.00 2.59
247 248 4.181010 CATGGTGGCCTCCTCGGG 62.181 72.222 23.90 7.66 0.00 5.14
248 249 4.181010 CCATGGTGGCCTCCTCGG 62.181 72.222 23.90 19.06 0.00 4.63
249 250 4.181010 CCCATGGTGGCCTCCTCG 62.181 72.222 23.90 14.44 35.79 4.63
250 251 3.017581 ACCCATGGTGGCCTCCTC 61.018 66.667 23.90 0.00 35.79 3.71
277 278 3.643595 TTGAAGATGGGCAGGGGCG 62.644 63.158 0.00 0.00 42.47 6.13
278 279 2.054453 GTTGAAGATGGGCAGGGGC 61.054 63.158 0.00 0.00 40.13 5.80
279 280 1.750399 CGTTGAAGATGGGCAGGGG 60.750 63.158 0.00 0.00 0.00 4.79
280 281 1.002134 ACGTTGAAGATGGGCAGGG 60.002 57.895 0.00 0.00 0.00 4.45
281 282 1.926511 GCACGTTGAAGATGGGCAGG 61.927 60.000 0.00 0.00 43.46 4.85
282 283 1.503542 GCACGTTGAAGATGGGCAG 59.496 57.895 0.00 0.00 43.46 4.85
283 284 1.971167 GGCACGTTGAAGATGGGCA 60.971 57.895 0.00 0.00 45.90 5.36
284 285 1.675641 AGGCACGTTGAAGATGGGC 60.676 57.895 0.00 0.00 43.24 5.36
285 286 1.308069 CCAGGCACGTTGAAGATGGG 61.308 60.000 0.00 0.00 0.00 4.00
286 287 0.606401 ACCAGGCACGTTGAAGATGG 60.606 55.000 0.00 0.00 0.00 3.51
287 288 0.798776 GACCAGGCACGTTGAAGATG 59.201 55.000 0.00 0.00 0.00 2.90
288 289 0.321653 GGACCAGGCACGTTGAAGAT 60.322 55.000 0.00 0.00 0.00 2.40
289 290 1.070786 GGACCAGGCACGTTGAAGA 59.929 57.895 0.00 0.00 0.00 2.87
290 291 0.606401 ATGGACCAGGCACGTTGAAG 60.606 55.000 0.00 0.00 0.00 3.02
291 292 0.888736 CATGGACCAGGCACGTTGAA 60.889 55.000 0.00 0.00 0.00 2.69
292 293 1.302431 CATGGACCAGGCACGTTGA 60.302 57.895 0.00 0.00 0.00 3.18
293 294 1.577328 GACATGGACCAGGCACGTTG 61.577 60.000 5.94 0.00 0.00 4.10
294 295 1.302511 GACATGGACCAGGCACGTT 60.303 57.895 5.94 0.00 0.00 3.99
295 296 2.347490 GACATGGACCAGGCACGT 59.653 61.111 5.94 0.00 0.00 4.49
296 297 2.815211 CGACATGGACCAGGCACG 60.815 66.667 5.94 8.89 0.00 5.34
297 298 3.127533 GCGACATGGACCAGGCAC 61.128 66.667 5.94 0.00 0.00 5.01
298 299 4.408821 GGCGACATGGACCAGGCA 62.409 66.667 5.94 0.00 0.00 4.75
300 301 4.838152 CCGGCGACATGGACCAGG 62.838 72.222 9.30 4.17 0.00 4.45
301 302 4.838152 CCCGGCGACATGGACCAG 62.838 72.222 9.30 0.00 0.00 4.00
303 304 3.463585 TACCCGGCGACATGGACC 61.464 66.667 9.30 0.00 0.00 4.46
304 305 2.202837 GTACCCGGCGACATGGAC 60.203 66.667 9.30 0.00 0.00 4.02
305 306 2.680707 TGTACCCGGCGACATGGA 60.681 61.111 9.30 0.00 0.00 3.41
306 307 2.510691 GTGTACCCGGCGACATGG 60.511 66.667 9.30 2.75 0.00 3.66
307 308 2.510691 GGTGTACCCGGCGACATG 60.511 66.667 9.30 0.00 0.00 3.21
316 317 4.462280 CTTCCCGGCGGTGTACCC 62.462 72.222 26.32 0.00 0.00 3.69
317 318 4.462280 CCTTCCCGGCGGTGTACC 62.462 72.222 26.32 0.00 0.00 3.34
318 319 4.462280 CCCTTCCCGGCGGTGTAC 62.462 72.222 26.32 0.00 0.00 2.90
342 343 3.966026 CTCGTTGGAGTCGGGCGAC 62.966 68.421 0.00 0.00 44.86 5.19
343 344 3.744719 CTCGTTGGAGTCGGGCGA 61.745 66.667 0.00 2.52 35.48 5.54
344 345 4.796231 CCTCGTTGGAGTCGGGCG 62.796 72.222 0.00 0.00 38.70 6.13
345 346 4.452733 CCCTCGTTGGAGTCGGGC 62.453 72.222 0.00 0.00 38.70 6.13
346 347 3.771160 CCCCTCGTTGGAGTCGGG 61.771 72.222 0.00 0.00 38.70 5.14
347 348 0.754217 TATCCCCTCGTTGGAGTCGG 60.754 60.000 0.00 0.00 38.70 4.79
348 349 0.384669 GTATCCCCTCGTTGGAGTCG 59.615 60.000 0.00 0.00 38.70 4.18
349 350 0.751452 GGTATCCCCTCGTTGGAGTC 59.249 60.000 0.00 0.00 38.70 3.36
350 351 1.041447 CGGTATCCCCTCGTTGGAGT 61.041 60.000 0.00 0.00 38.70 3.85
351 352 1.740285 CGGTATCCCCTCGTTGGAG 59.260 63.158 0.00 0.00 40.14 3.86
352 353 2.428925 GCGGTATCCCCTCGTTGGA 61.429 63.158 0.00 0.00 38.35 3.53
353 354 2.108362 GCGGTATCCCCTCGTTGG 59.892 66.667 0.00 0.00 0.00 3.77
354 355 1.067582 GAGCGGTATCCCCTCGTTG 59.932 63.158 0.00 0.00 0.00 4.10
355 356 1.076192 AGAGCGGTATCCCCTCGTT 60.076 57.895 0.00 0.00 34.81 3.85
356 357 1.828660 CAGAGCGGTATCCCCTCGT 60.829 63.158 0.00 0.00 34.81 4.18
357 358 2.565645 CCAGAGCGGTATCCCCTCG 61.566 68.421 0.00 0.00 34.81 4.63
358 359 2.873525 GCCAGAGCGGTATCCCCTC 61.874 68.421 0.00 0.00 36.97 4.30
359 360 2.844839 GCCAGAGCGGTATCCCCT 60.845 66.667 0.00 0.00 36.97 4.79
369 370 1.784525 ATTAATACTCGCGCCAGAGC 58.215 50.000 9.65 0.00 41.77 4.09
370 371 2.909244 CGTATTAATACTCGCGCCAGAG 59.091 50.000 20.54 10.05 43.56 3.35
371 372 2.351060 CCGTATTAATACTCGCGCCAGA 60.351 50.000 20.54 0.00 0.00 3.86
372 373 1.983605 CCGTATTAATACTCGCGCCAG 59.016 52.381 20.54 0.00 0.00 4.85
373 374 1.336148 CCCGTATTAATACTCGCGCCA 60.336 52.381 20.54 0.00 0.00 5.69
374 375 1.343506 CCCGTATTAATACTCGCGCC 58.656 55.000 20.54 0.00 0.00 6.53
375 376 1.336240 ACCCCGTATTAATACTCGCGC 60.336 52.381 20.54 0.00 0.00 6.86
376 377 2.712057 ACCCCGTATTAATACTCGCG 57.288 50.000 20.54 0.00 0.00 5.87
377 378 4.370917 TGAAACCCCGTATTAATACTCGC 58.629 43.478 20.54 6.38 0.00 5.03
378 379 7.486802 AAATGAAACCCCGTATTAATACTCG 57.513 36.000 20.54 10.42 0.00 4.18
379 380 8.680001 ACAAAATGAAACCCCGTATTAATACTC 58.320 33.333 20.54 12.00 0.00 2.59
380 381 8.584063 ACAAAATGAAACCCCGTATTAATACT 57.416 30.769 20.54 3.68 0.00 2.12
383 384 9.191479 TCATACAAAATGAAACCCCGTATTAAT 57.809 29.630 0.00 0.00 0.00 1.40
384 385 8.577048 TCATACAAAATGAAACCCCGTATTAA 57.423 30.769 0.00 0.00 0.00 1.40
385 386 8.754991 ATCATACAAAATGAAACCCCGTATTA 57.245 30.769 0.00 0.00 0.00 0.98
386 387 7.654022 ATCATACAAAATGAAACCCCGTATT 57.346 32.000 0.00 0.00 0.00 1.89
387 388 8.792633 CATATCATACAAAATGAAACCCCGTAT 58.207 33.333 0.00 0.00 0.00 3.06
388 389 7.229707 CCATATCATACAAAATGAAACCCCGTA 59.770 37.037 0.00 0.00 0.00 4.02
389 390 6.040391 CCATATCATACAAAATGAAACCCCGT 59.960 38.462 0.00 0.00 0.00 5.28
390 391 6.040391 ACCATATCATACAAAATGAAACCCCG 59.960 38.462 0.00 0.00 0.00 5.73
391 392 7.360113 ACCATATCATACAAAATGAAACCCC 57.640 36.000 0.00 0.00 0.00 4.95
412 413 7.160049 TCGTTATGAAAGTGGTTGTATTACCA 58.840 34.615 0.00 0.00 45.73 3.25
413 414 7.599630 TCGTTATGAAAGTGGTTGTATTACC 57.400 36.000 0.00 0.00 38.73 2.85
414 415 9.095065 AGATCGTTATGAAAGTGGTTGTATTAC 57.905 33.333 0.00 0.00 0.00 1.89
416 417 9.095065 GTAGATCGTTATGAAAGTGGTTGTATT 57.905 33.333 0.00 0.00 0.00 1.89
417 418 8.475639 AGTAGATCGTTATGAAAGTGGTTGTAT 58.524 33.333 0.00 0.00 0.00 2.29
418 419 7.833786 AGTAGATCGTTATGAAAGTGGTTGTA 58.166 34.615 0.00 0.00 0.00 2.41
419 420 6.698380 AGTAGATCGTTATGAAAGTGGTTGT 58.302 36.000 0.00 0.00 0.00 3.32
420 421 7.044249 CGTAGTAGATCGTTATGAAAGTGGTTG 60.044 40.741 0.00 0.00 0.00 3.77
421 422 6.971184 CGTAGTAGATCGTTATGAAAGTGGTT 59.029 38.462 0.00 0.00 0.00 3.67
422 423 6.459298 CCGTAGTAGATCGTTATGAAAGTGGT 60.459 42.308 0.00 0.00 0.00 4.16
423 424 5.913514 CCGTAGTAGATCGTTATGAAAGTGG 59.086 44.000 0.00 0.00 0.00 4.00
424 425 6.493116 ACCGTAGTAGATCGTTATGAAAGTG 58.507 40.000 0.00 0.00 0.00 3.16
425 426 6.690194 ACCGTAGTAGATCGTTATGAAAGT 57.310 37.500 0.00 0.00 0.00 2.66
426 427 7.319851 CGTAACCGTAGTAGATCGTTATGAAAG 59.680 40.741 0.00 0.00 0.00 2.62
427 428 7.011016 TCGTAACCGTAGTAGATCGTTATGAAA 59.989 37.037 6.78 0.00 35.01 2.69
428 429 6.478673 TCGTAACCGTAGTAGATCGTTATGAA 59.521 38.462 6.78 0.00 35.01 2.57
429 430 5.983118 TCGTAACCGTAGTAGATCGTTATGA 59.017 40.000 5.66 5.66 35.01 2.15
430 431 6.215477 TCGTAACCGTAGTAGATCGTTATG 57.785 41.667 0.00 0.00 35.01 1.90
431 432 6.073548 CCTTCGTAACCGTAGTAGATCGTTAT 60.074 42.308 0.00 0.00 35.01 1.89
432 433 5.234329 CCTTCGTAACCGTAGTAGATCGTTA 59.766 44.000 0.00 0.00 35.01 3.18
433 434 4.034510 CCTTCGTAACCGTAGTAGATCGTT 59.965 45.833 0.00 0.00 35.01 3.85
434 435 3.557595 CCTTCGTAACCGTAGTAGATCGT 59.442 47.826 0.00 0.00 35.01 3.73
435 436 3.557595 ACCTTCGTAACCGTAGTAGATCG 59.442 47.826 0.00 0.00 35.01 3.69
436 437 4.260948 CCACCTTCGTAACCGTAGTAGATC 60.261 50.000 0.00 0.00 35.01 2.75
437 438 3.629398 CCACCTTCGTAACCGTAGTAGAT 59.371 47.826 0.00 0.00 35.01 1.98
438 439 3.009723 CCACCTTCGTAACCGTAGTAGA 58.990 50.000 0.00 0.00 35.01 2.59
439 440 2.478539 GCCACCTTCGTAACCGTAGTAG 60.479 54.545 0.00 0.00 35.01 2.57
440 441 1.472480 GCCACCTTCGTAACCGTAGTA 59.528 52.381 0.00 0.00 35.01 1.82
441 442 0.244721 GCCACCTTCGTAACCGTAGT 59.755 55.000 0.00 0.00 35.01 2.73
442 443 0.529378 AGCCACCTTCGTAACCGTAG 59.471 55.000 0.00 0.00 35.01 3.51
443 444 0.244450 CAGCCACCTTCGTAACCGTA 59.756 55.000 0.00 0.00 35.01 4.02
444 445 1.005394 CAGCCACCTTCGTAACCGT 60.005 57.895 0.00 0.00 35.01 4.83
445 446 0.244450 TACAGCCACCTTCGTAACCG 59.756 55.000 0.00 0.00 0.00 4.44
446 447 2.685850 ATACAGCCACCTTCGTAACC 57.314 50.000 0.00 0.00 0.00 2.85
447 448 4.032104 CGTTAATACAGCCACCTTCGTAAC 59.968 45.833 0.00 0.00 0.00 2.50
448 449 4.082300 TCGTTAATACAGCCACCTTCGTAA 60.082 41.667 0.00 0.00 0.00 3.18
449 450 3.443329 TCGTTAATACAGCCACCTTCGTA 59.557 43.478 0.00 0.00 0.00 3.43
450 451 2.231964 TCGTTAATACAGCCACCTTCGT 59.768 45.455 0.00 0.00 0.00 3.85
451 452 2.858344 CTCGTTAATACAGCCACCTTCG 59.142 50.000 0.00 0.00 0.00 3.79
452 453 3.858247 ACTCGTTAATACAGCCACCTTC 58.142 45.455 0.00 0.00 0.00 3.46
453 454 3.975168 ACTCGTTAATACAGCCACCTT 57.025 42.857 0.00 0.00 0.00 3.50
454 455 5.609533 AATACTCGTTAATACAGCCACCT 57.390 39.130 0.00 0.00 0.00 4.00
455 456 7.095355 CCATTAATACTCGTTAATACAGCCACC 60.095 40.741 0.00 0.00 33.66 4.61
456 457 7.440255 ACCATTAATACTCGTTAATACAGCCAC 59.560 37.037 0.00 0.00 33.66 5.01
457 458 7.502696 ACCATTAATACTCGTTAATACAGCCA 58.497 34.615 0.00 0.00 33.66 4.75
458 459 7.958053 ACCATTAATACTCGTTAATACAGCC 57.042 36.000 0.00 0.00 33.66 4.85
467 468 9.939802 AAAGAGAACTAACCATTAATACTCGTT 57.060 29.630 0.00 0.00 0.00 3.85
468 469 9.939802 AAAAGAGAACTAACCATTAATACTCGT 57.060 29.630 0.00 0.00 0.00 4.18
495 496 4.041567 TGCTCTAATCAAGTGTCAAGGGAA 59.958 41.667 0.00 0.00 0.00 3.97
496 497 3.582647 TGCTCTAATCAAGTGTCAAGGGA 59.417 43.478 0.00 0.00 0.00 4.20
498 499 4.573900 AGTGCTCTAATCAAGTGTCAAGG 58.426 43.478 0.00 0.00 0.00 3.61
500 501 6.147821 GCTTAAGTGCTCTAATCAAGTGTCAA 59.852 38.462 4.02 0.00 0.00 3.18
561 563 9.616156 TGGCGTACCATATATTTTAAAGAAAGA 57.384 29.630 0.00 0.00 42.67 2.52
583 586 8.514136 TTTTTCTCAAAAGTATGTTAATGGCG 57.486 30.769 0.00 0.00 0.00 5.69
615 910 1.065551 GGCTGTCGGATGGCAAATTAC 59.934 52.381 0.00 0.00 0.00 1.89
666 961 4.785453 CCACTTGGCGCCCTCTCC 62.785 72.222 26.77 0.00 0.00 3.71
858 1154 3.493303 GAGGAGGGGTGGGGATGC 61.493 72.222 0.00 0.00 0.00 3.91
860 1156 1.632269 TAGGAGGAGGGGTGGGGAT 60.632 63.158 0.00 0.00 0.00 3.85
861 1157 2.204721 TAGGAGGAGGGGTGGGGA 60.205 66.667 0.00 0.00 0.00 4.81
877 1173 1.666553 CACGCCGGAAAGCACTGTA 60.667 57.895 5.05 0.00 0.00 2.74
917 1213 0.179100 GCACGATCTGCCAAGAGCTA 60.179 55.000 6.02 0.00 44.23 3.32
1279 1595 8.136165 GTCTTGTCCTTGTATATGTACCTACAG 58.864 40.741 0.00 0.00 39.92 2.74
1306 1622 1.291877 CGGACAGCTTCTCAAACGGG 61.292 60.000 0.00 0.00 0.00 5.28
1381 1697 3.587061 TCCTGTGAATCAGAAAAGCCCTA 59.413 43.478 0.00 0.00 46.27 3.53
1512 1830 5.499004 TTGTTTATCCAGTCCTAGCACTT 57.501 39.130 0.00 0.00 0.00 3.16
1521 1839 9.010029 TGGTAGAATTCTTTTGTTTATCCAGTC 57.990 33.333 14.36 0.00 0.00 3.51
1523 1841 9.846248 CTTGGTAGAATTCTTTTGTTTATCCAG 57.154 33.333 14.36 0.00 0.00 3.86
1524 1842 9.581289 TCTTGGTAGAATTCTTTTGTTTATCCA 57.419 29.630 14.36 6.20 0.00 3.41
1528 1846 7.724061 AGCCTCTTGGTAGAATTCTTTTGTTTA 59.276 33.333 14.36 0.00 35.27 2.01
1536 1854 4.625083 GCTCAAGCCTCTTGGTAGAATTCT 60.625 45.833 13.56 13.56 35.27 2.40
1544 1862 1.557269 ATCCGCTCAAGCCTCTTGGT 61.557 55.000 6.71 0.00 37.91 3.67
1559 1877 7.475771 TGTTTTGAAGGAAAATTTTCATCCG 57.524 32.000 27.53 0.00 38.92 4.18
1578 1896 9.643693 CCTTAGAATTCATTTGCACTATGTTTT 57.356 29.630 8.44 3.94 0.00 2.43
1641 1959 8.262933 GGATGATTTGGATTCTCAGGAATTTTT 58.737 33.333 0.00 0.00 41.68 1.94
1642 1960 7.400915 TGGATGATTTGGATTCTCAGGAATTTT 59.599 33.333 0.00 0.00 41.68 1.82
1643 1961 6.899075 TGGATGATTTGGATTCTCAGGAATTT 59.101 34.615 0.00 0.00 41.68 1.82
1644 1962 6.437755 TGGATGATTTGGATTCTCAGGAATT 58.562 36.000 0.00 0.00 41.68 2.17
1645 1963 6.022107 TGGATGATTTGGATTCTCAGGAAT 57.978 37.500 0.00 0.00 43.99 3.01
1646 1964 5.192321 TCTGGATGATTTGGATTCTCAGGAA 59.808 40.000 0.00 0.00 35.78 3.36
1647 1965 4.723285 TCTGGATGATTTGGATTCTCAGGA 59.277 41.667 0.00 0.00 0.00 3.86
1648 1966 5.045012 TCTGGATGATTTGGATTCTCAGG 57.955 43.478 0.00 0.00 0.00 3.86
1649 1967 7.255520 GGAATTCTGGATGATTTGGATTCTCAG 60.256 40.741 5.23 0.00 0.00 3.35
1650 1968 6.548622 GGAATTCTGGATGATTTGGATTCTCA 59.451 38.462 5.23 0.00 0.00 3.27
1651 1969 6.776603 AGGAATTCTGGATGATTTGGATTCTC 59.223 38.462 5.23 0.00 0.00 2.87
1652 1970 6.680540 AGGAATTCTGGATGATTTGGATTCT 58.319 36.000 5.23 0.00 0.00 2.40
1669 1987 5.049129 CGGCTCCTTTGATTCATAGGAATTC 60.049 44.000 21.55 14.84 43.69 2.17
1670 1988 4.823989 CGGCTCCTTTGATTCATAGGAATT 59.176 41.667 21.55 0.00 43.69 2.17
1672 1990 3.199946 ACGGCTCCTTTGATTCATAGGAA 59.800 43.478 21.55 9.82 40.12 3.36
1673 1991 2.771943 ACGGCTCCTTTGATTCATAGGA 59.228 45.455 20.46 20.46 38.81 2.94
1735 2058 9.349713 TGTTTATCATTTTTGGTAGACAAGTCT 57.650 29.630 7.96 7.96 40.82 3.24
1736 2059 9.394477 GTGTTTATCATTTTTGGTAGACAAGTC 57.606 33.333 0.00 0.00 40.82 3.01
1737 2060 8.908903 TGTGTTTATCATTTTTGGTAGACAAGT 58.091 29.630 0.00 0.00 40.82 3.16
1738 2061 9.180678 GTGTGTTTATCATTTTTGGTAGACAAG 57.819 33.333 0.00 0.00 40.82 3.16
1739 2062 8.687242 TGTGTGTTTATCATTTTTGGTAGACAA 58.313 29.630 0.00 0.00 37.28 3.18
1740 2063 8.226819 TGTGTGTTTATCATTTTTGGTAGACA 57.773 30.769 0.00 0.00 0.00 3.41
1741 2064 9.128107 CATGTGTGTTTATCATTTTTGGTAGAC 57.872 33.333 0.00 0.00 0.00 2.59
1742 2065 7.812191 GCATGTGTGTTTATCATTTTTGGTAGA 59.188 33.333 0.00 0.00 0.00 2.59
1743 2066 7.201342 CGCATGTGTGTTTATCATTTTTGGTAG 60.201 37.037 0.00 0.00 0.00 3.18
1744 2067 6.584184 CGCATGTGTGTTTATCATTTTTGGTA 59.416 34.615 0.00 0.00 0.00 3.25
1745 2068 5.404968 CGCATGTGTGTTTATCATTTTTGGT 59.595 36.000 0.00 0.00 0.00 3.67
1746 2069 5.404968 ACGCATGTGTGTTTATCATTTTTGG 59.595 36.000 11.96 0.00 34.75 3.28
1747 2070 6.450845 ACGCATGTGTGTTTATCATTTTTG 57.549 33.333 11.96 0.00 34.75 2.44
1759 2082 0.589223 CCCGTAAAACGCATGTGTGT 59.411 50.000 13.66 3.98 40.91 3.72
1760 2083 0.109964 CCCCGTAAAACGCATGTGTG 60.110 55.000 13.66 0.00 40.91 3.82
1761 2084 1.858372 GCCCCGTAAAACGCATGTGT 61.858 55.000 5.96 5.96 40.91 3.72
1762 2085 1.154112 GCCCCGTAAAACGCATGTG 60.154 57.895 4.30 4.30 40.91 3.21
1763 2086 1.302993 AGCCCCGTAAAACGCATGT 60.303 52.632 0.00 0.00 40.91 3.21
1764 2087 1.136565 CAGCCCCGTAAAACGCATG 59.863 57.895 0.00 0.00 40.91 4.06
1765 2088 0.891904 AACAGCCCCGTAAAACGCAT 60.892 50.000 0.00 0.00 40.91 4.73
1766 2089 0.250209 TAACAGCCCCGTAAAACGCA 60.250 50.000 0.00 0.00 40.91 5.24
1767 2090 1.089112 ATAACAGCCCCGTAAAACGC 58.911 50.000 0.00 0.00 40.91 4.84
1768 2091 1.399089 CCATAACAGCCCCGTAAAACG 59.601 52.381 0.00 0.00 42.11 3.60
1769 2092 1.746787 CCCATAACAGCCCCGTAAAAC 59.253 52.381 0.00 0.00 0.00 2.43
1770 2093 1.634459 TCCCATAACAGCCCCGTAAAA 59.366 47.619 0.00 0.00 0.00 1.52
1771 2094 1.065272 GTCCCATAACAGCCCCGTAAA 60.065 52.381 0.00 0.00 0.00 2.01
1772 2095 0.542805 GTCCCATAACAGCCCCGTAA 59.457 55.000 0.00 0.00 0.00 3.18
1773 2096 0.325860 AGTCCCATAACAGCCCCGTA 60.326 55.000 0.00 0.00 0.00 4.02
1774 2097 1.205460 AAGTCCCATAACAGCCCCGT 61.205 55.000 0.00 0.00 0.00 5.28
1775 2098 0.834612 TAAGTCCCATAACAGCCCCG 59.165 55.000 0.00 0.00 0.00 5.73
1776 2099 1.133884 GGTAAGTCCCATAACAGCCCC 60.134 57.143 0.00 0.00 0.00 5.80
1777 2100 1.562475 TGGTAAGTCCCATAACAGCCC 59.438 52.381 0.00 0.00 34.77 5.19
1778 2101 3.577805 ATGGTAAGTCCCATAACAGCC 57.422 47.619 0.00 0.00 43.48 4.85
1784 2107 7.570982 TGGAGAGATTTTATGGTAAGTCCCATA 59.429 37.037 0.00 0.00 43.48 2.74
1785 2108 6.389869 TGGAGAGATTTTATGGTAAGTCCCAT 59.610 38.462 0.00 0.00 46.86 4.00
1786 2109 5.729229 TGGAGAGATTTTATGGTAAGTCCCA 59.271 40.000 0.00 0.00 39.27 4.37
1787 2110 6.056236 GTGGAGAGATTTTATGGTAAGTCCC 58.944 44.000 0.00 0.00 34.77 4.46
1788 2111 6.056236 GGTGGAGAGATTTTATGGTAAGTCC 58.944 44.000 0.00 0.00 0.00 3.85
1789 2112 5.753921 CGGTGGAGAGATTTTATGGTAAGTC 59.246 44.000 0.00 0.00 0.00 3.01
1790 2113 5.671493 CGGTGGAGAGATTTTATGGTAAGT 58.329 41.667 0.00 0.00 0.00 2.24
1791 2114 4.511826 GCGGTGGAGAGATTTTATGGTAAG 59.488 45.833 0.00 0.00 0.00 2.34
1792 2115 4.448210 GCGGTGGAGAGATTTTATGGTAA 58.552 43.478 0.00 0.00 0.00 2.85
1793 2116 3.491964 CGCGGTGGAGAGATTTTATGGTA 60.492 47.826 0.00 0.00 0.00 3.25
1794 2117 2.741878 CGCGGTGGAGAGATTTTATGGT 60.742 50.000 0.00 0.00 0.00 3.55
1795 2118 1.867233 CGCGGTGGAGAGATTTTATGG 59.133 52.381 0.00 0.00 0.00 2.74
1796 2119 1.867233 CCGCGGTGGAGAGATTTTATG 59.133 52.381 19.50 0.00 42.00 1.90
1797 2120 1.202651 CCCGCGGTGGAGAGATTTTAT 60.203 52.381 26.12 0.00 42.00 1.40
1798 2121 0.177141 CCCGCGGTGGAGAGATTTTA 59.823 55.000 26.12 0.00 42.00 1.52
1799 2122 1.078426 CCCGCGGTGGAGAGATTTT 60.078 57.895 26.12 0.00 42.00 1.82
1800 2123 2.584608 CCCGCGGTGGAGAGATTT 59.415 61.111 26.12 0.00 42.00 2.17
1801 2124 3.470888 CCCCGCGGTGGAGAGATT 61.471 66.667 26.12 0.00 42.00 2.40
1819 2142 2.941583 AGGAGAAAGGGGCCCACC 60.942 66.667 27.72 18.52 39.11 4.61
1820 2143 2.677848 GAGGAGAAAGGGGCCCAC 59.322 66.667 27.72 15.67 0.00 4.61
1821 2144 1.833055 TAGGAGGAGAAAGGGGCCCA 61.833 60.000 27.72 0.00 0.00 5.36
1822 2145 0.623617 TTAGGAGGAGAAAGGGGCCC 60.624 60.000 17.12 17.12 0.00 5.80
1823 2146 1.422024 GATTAGGAGGAGAAAGGGGCC 59.578 57.143 0.00 0.00 0.00 5.80
1824 2147 1.422024 GGATTAGGAGGAGAAAGGGGC 59.578 57.143 0.00 0.00 0.00 5.80
1825 2148 2.776665 TGGATTAGGAGGAGAAAGGGG 58.223 52.381 0.00 0.00 0.00 4.79
1826 2149 4.413520 TCATTGGATTAGGAGGAGAAAGGG 59.586 45.833 0.00 0.00 0.00 3.95
1827 2150 5.636903 TCATTGGATTAGGAGGAGAAAGG 57.363 43.478 0.00 0.00 0.00 3.11
1828 2151 7.944729 TTTTCATTGGATTAGGAGGAGAAAG 57.055 36.000 0.00 0.00 0.00 2.62
1829 2152 7.950124 AGTTTTTCATTGGATTAGGAGGAGAAA 59.050 33.333 0.00 0.00 0.00 2.52
1830 2153 7.394359 CAGTTTTTCATTGGATTAGGAGGAGAA 59.606 37.037 0.00 0.00 0.00 2.87
1831 2154 6.886459 CAGTTTTTCATTGGATTAGGAGGAGA 59.114 38.462 0.00 0.00 0.00 3.71
1832 2155 6.405176 GCAGTTTTTCATTGGATTAGGAGGAG 60.405 42.308 0.00 0.00 0.00 3.69
1833 2156 5.418840 GCAGTTTTTCATTGGATTAGGAGGA 59.581 40.000 0.00 0.00 0.00 3.71
1834 2157 5.394553 GGCAGTTTTTCATTGGATTAGGAGG 60.395 44.000 0.00 0.00 0.00 4.30
1835 2158 5.185635 TGGCAGTTTTTCATTGGATTAGGAG 59.814 40.000 0.00 0.00 0.00 3.69
1836 2159 5.083122 TGGCAGTTTTTCATTGGATTAGGA 58.917 37.500 0.00 0.00 0.00 2.94
1837 2160 5.404466 TGGCAGTTTTTCATTGGATTAGG 57.596 39.130 0.00 0.00 0.00 2.69
1838 2161 4.866486 GCTGGCAGTTTTTCATTGGATTAG 59.134 41.667 17.16 0.00 0.00 1.73
1839 2162 4.527816 AGCTGGCAGTTTTTCATTGGATTA 59.472 37.500 17.16 0.00 0.00 1.75
1840 2163 3.325716 AGCTGGCAGTTTTTCATTGGATT 59.674 39.130 17.16 0.00 0.00 3.01
1841 2164 2.901839 AGCTGGCAGTTTTTCATTGGAT 59.098 40.909 17.16 0.00 0.00 3.41
1842 2165 2.318908 AGCTGGCAGTTTTTCATTGGA 58.681 42.857 17.16 0.00 0.00 3.53
1843 2166 2.825861 AGCTGGCAGTTTTTCATTGG 57.174 45.000 17.16 0.00 0.00 3.16
1844 2167 5.531634 TCTTTAGCTGGCAGTTTTTCATTG 58.468 37.500 17.16 0.00 0.00 2.82
1845 2168 5.789643 TCTTTAGCTGGCAGTTTTTCATT 57.210 34.783 17.16 0.00 0.00 2.57
1846 2169 5.477984 TGATCTTTAGCTGGCAGTTTTTCAT 59.522 36.000 17.16 2.19 0.00 2.57
1847 2170 4.826733 TGATCTTTAGCTGGCAGTTTTTCA 59.173 37.500 17.16 7.75 0.00 2.69
1848 2171 5.376854 TGATCTTTAGCTGGCAGTTTTTC 57.623 39.130 17.16 0.00 0.00 2.29
1849 2172 4.321527 GCTGATCTTTAGCTGGCAGTTTTT 60.322 41.667 17.16 2.45 38.14 1.94
1850 2173 3.192212 GCTGATCTTTAGCTGGCAGTTTT 59.808 43.478 17.16 5.00 38.14 2.43
1851 2174 2.751806 GCTGATCTTTAGCTGGCAGTTT 59.248 45.455 17.16 7.61 38.14 2.66
1852 2175 2.363683 GCTGATCTTTAGCTGGCAGTT 58.636 47.619 17.16 13.28 38.14 3.16
1853 2176 2.035530 GCTGATCTTTAGCTGGCAGT 57.964 50.000 17.16 5.61 38.14 4.40
1860 2183 4.877282 AGGATTACGAGCTGATCTTTAGC 58.123 43.478 0.00 0.00 41.43 3.09
1861 2184 8.138712 ACTTAAGGATTACGAGCTGATCTTTAG 58.861 37.037 7.53 0.00 0.00 1.85
1862 2185 8.008513 ACTTAAGGATTACGAGCTGATCTTTA 57.991 34.615 7.53 0.00 0.00 1.85
1863 2186 6.879400 ACTTAAGGATTACGAGCTGATCTTT 58.121 36.000 7.53 0.00 0.00 2.52
1864 2187 6.472686 ACTTAAGGATTACGAGCTGATCTT 57.527 37.500 7.53 0.00 0.00 2.40
1865 2188 7.285858 AGTTACTTAAGGATTACGAGCTGATCT 59.714 37.037 7.53 0.00 0.00 2.75
1866 2189 7.427214 AGTTACTTAAGGATTACGAGCTGATC 58.573 38.462 7.53 0.00 0.00 2.92
1867 2190 7.285858 AGAGTTACTTAAGGATTACGAGCTGAT 59.714 37.037 7.53 0.00 0.00 2.90
1868 2191 6.602406 AGAGTTACTTAAGGATTACGAGCTGA 59.398 38.462 7.53 0.00 0.00 4.26
1869 2192 6.797454 AGAGTTACTTAAGGATTACGAGCTG 58.203 40.000 7.53 0.00 0.00 4.24
1870 2193 6.039605 GGAGAGTTACTTAAGGATTACGAGCT 59.960 42.308 7.53 0.00 0.00 4.09
1871 2194 6.207928 GGAGAGTTACTTAAGGATTACGAGC 58.792 44.000 7.53 0.00 0.00 5.03
1872 2195 6.038050 ACGGAGAGTTACTTAAGGATTACGAG 59.962 42.308 7.53 0.00 0.00 4.18
1873 2196 5.882557 ACGGAGAGTTACTTAAGGATTACGA 59.117 40.000 7.53 0.00 0.00 3.43
1874 2197 6.129053 ACGGAGAGTTACTTAAGGATTACG 57.871 41.667 7.53 0.18 0.00 3.18
1875 2198 7.542025 TCAACGGAGAGTTACTTAAGGATTAC 58.458 38.462 7.53 0.00 42.02 1.89
1876 2199 7.707624 TCAACGGAGAGTTACTTAAGGATTA 57.292 36.000 7.53 0.00 42.02 1.75
1877 2200 6.600882 TCAACGGAGAGTTACTTAAGGATT 57.399 37.500 7.53 0.00 42.02 3.01
1878 2201 6.154706 ACATCAACGGAGAGTTACTTAAGGAT 59.845 38.462 7.53 0.00 42.02 3.24
1879 2202 5.479375 ACATCAACGGAGAGTTACTTAAGGA 59.521 40.000 7.53 0.00 42.02 3.36
1880 2203 5.721232 ACATCAACGGAGAGTTACTTAAGG 58.279 41.667 7.53 0.00 42.02 2.69
1881 2204 6.472808 GCTACATCAACGGAGAGTTACTTAAG 59.527 42.308 0.00 0.00 42.02 1.85
1882 2205 6.071784 TGCTACATCAACGGAGAGTTACTTAA 60.072 38.462 0.00 0.00 42.02 1.85
1883 2206 5.416639 TGCTACATCAACGGAGAGTTACTTA 59.583 40.000 0.00 0.00 42.02 2.24
1884 2207 4.219944 TGCTACATCAACGGAGAGTTACTT 59.780 41.667 0.00 0.00 42.02 2.24
1885 2208 3.762288 TGCTACATCAACGGAGAGTTACT 59.238 43.478 0.00 0.00 42.02 2.24
1886 2209 4.106029 TGCTACATCAACGGAGAGTTAC 57.894 45.455 0.00 0.00 42.02 2.50
1887 2210 5.109210 CAATGCTACATCAACGGAGAGTTA 58.891 41.667 0.00 0.00 42.02 2.24
1888 2211 3.895232 ATGCTACATCAACGGAGAGTT 57.105 42.857 0.00 0.00 45.45 3.01
1889 2212 3.055819 ACAATGCTACATCAACGGAGAGT 60.056 43.478 0.00 0.00 0.00 3.24
1890 2213 3.525537 ACAATGCTACATCAACGGAGAG 58.474 45.455 0.00 0.00 0.00 3.20
1891 2214 3.610040 ACAATGCTACATCAACGGAGA 57.390 42.857 0.00 0.00 0.00 3.71
1892 2215 4.007282 CAACAATGCTACATCAACGGAG 57.993 45.455 0.00 0.00 0.00 4.63
1906 2229 4.636206 GGGGTAAGAGTCTAAGCAACAATG 59.364 45.833 0.00 0.00 0.00 2.82
1907 2230 4.288626 TGGGGTAAGAGTCTAAGCAACAAT 59.711 41.667 0.00 0.00 0.00 2.71
1908 2231 3.649023 TGGGGTAAGAGTCTAAGCAACAA 59.351 43.478 0.00 0.00 0.00 2.83
1909 2232 3.007614 GTGGGGTAAGAGTCTAAGCAACA 59.992 47.826 0.00 0.00 0.00 3.33
1910 2233 3.261137 AGTGGGGTAAGAGTCTAAGCAAC 59.739 47.826 0.00 0.00 0.00 4.17
1911 2234 3.517612 AGTGGGGTAAGAGTCTAAGCAA 58.482 45.455 0.00 0.00 0.00 3.91
1912 2235 3.185880 AGTGGGGTAAGAGTCTAAGCA 57.814 47.619 0.00 0.00 0.00 3.91
1913 2236 3.863041 CAAGTGGGGTAAGAGTCTAAGC 58.137 50.000 0.00 0.00 0.00 3.09
1914 2237 3.369576 GGCAAGTGGGGTAAGAGTCTAAG 60.370 52.174 0.00 0.00 0.00 2.18
1915 2238 2.570302 GGCAAGTGGGGTAAGAGTCTAA 59.430 50.000 0.00 0.00 0.00 2.10
2010 2347 2.195922 CTTTTGTGCCACAAGTGAAGC 58.804 47.619 10.58 0.00 39.53 3.86
2045 4401 2.138596 CAACGGATTTGCTTGCTTGT 57.861 45.000 0.00 0.00 0.00 3.16
2058 4414 0.035739 GGACTAACAAGGGCAACGGA 59.964 55.000 0.00 0.00 37.60 4.69
2074 4430 2.413453 GTGTGAGCGAGAAAATGAGGAC 59.587 50.000 0.00 0.00 0.00 3.85
2085 4441 1.195448 GACAAACCATGTGTGAGCGAG 59.805 52.381 0.00 0.00 44.12 5.03
2086 4442 1.225855 GACAAACCATGTGTGAGCGA 58.774 50.000 0.00 0.00 44.12 4.93
2087 4443 0.110688 CGACAAACCATGTGTGAGCG 60.111 55.000 0.00 0.00 44.12 5.03
2088 4444 1.069906 GTCGACAAACCATGTGTGAGC 60.070 52.381 11.55 0.00 44.12 4.26
2091 4447 3.181501 ACTTTGTCGACAAACCATGTGTG 60.182 43.478 33.86 24.33 44.12 3.82
2092 4448 3.013921 ACTTTGTCGACAAACCATGTGT 58.986 40.909 33.86 26.12 44.12 3.72
2093 4449 3.691049 ACTTTGTCGACAAACCATGTG 57.309 42.857 33.86 25.55 44.12 3.21
2105 4462 1.264288 GGGCTGACTGAAACTTTGTCG 59.736 52.381 0.00 0.00 33.81 4.35
2110 4467 2.683211 ATTGGGGCTGACTGAAACTT 57.317 45.000 0.00 0.00 0.00 2.66
2112 4469 3.751479 AAAATTGGGGCTGACTGAAAC 57.249 42.857 0.00 0.00 0.00 2.78
2117 4474 3.052944 TGGCTATAAAATTGGGGCTGACT 60.053 43.478 0.00 0.00 0.00 3.41
2133 4490 5.171476 CGCAGCTATAAAGTACATGGCTAT 58.829 41.667 0.00 0.00 38.05 2.97
2205 4562 8.948631 ATCACAGACGATGTTGACTATATTTT 57.051 30.769 0.00 0.00 41.41 1.82
2219 4576 0.179000 GCCCCAGAATCACAGACGAT 59.821 55.000 0.00 0.00 0.00 3.73
2220 4577 0.904865 AGCCCCAGAATCACAGACGA 60.905 55.000 0.00 0.00 0.00 4.20
2221 4578 0.460987 GAGCCCCAGAATCACAGACG 60.461 60.000 0.00 0.00 0.00 4.18
2222 4579 0.908198 AGAGCCCCAGAATCACAGAC 59.092 55.000 0.00 0.00 0.00 3.51
2223 4580 2.550277 TAGAGCCCCAGAATCACAGA 57.450 50.000 0.00 0.00 0.00 3.41
2231 4588 7.076446 AGAAGTAGATAAATTAGAGCCCCAGA 58.924 38.462 0.00 0.00 0.00 3.86
2276 4633 8.622157 GGCAAAAAGTAAAGAAAAGAGTCTAGT 58.378 33.333 0.00 0.00 0.00 2.57
2347 4848 4.184079 ACCGTACAACACTCATTCTACC 57.816 45.455 0.00 0.00 0.00 3.18
2350 4851 4.602340 AGAACCGTACAACACTCATTCT 57.398 40.909 0.00 0.00 0.00 2.40
2357 4858 1.589803 AGCCAAGAACCGTACAACAC 58.410 50.000 0.00 0.00 0.00 3.32
2362 4863 5.678132 TCTTTTTAAGCCAAGAACCGTAC 57.322 39.130 0.00 0.00 0.00 3.67
2366 4867 6.338146 ACAACTTCTTTTTAAGCCAAGAACC 58.662 36.000 3.60 0.00 34.71 3.62
2414 5136 1.340405 GCATCACCAATGGAGACCAGT 60.340 52.381 6.16 0.00 36.75 4.00
2730 5500 1.067635 GCCAATGCAACGATTCCAACT 60.068 47.619 0.00 0.00 37.47 3.16
2733 5503 1.505807 CGCCAATGCAACGATTCCA 59.494 52.632 0.00 0.00 37.32 3.53
2736 5506 2.181525 GCCGCCAATGCAACGATT 59.818 55.556 0.00 0.00 37.32 3.34
2799 5569 6.098838 AGCATTCCCTTTTTCACTTTCTTTCT 59.901 34.615 0.00 0.00 0.00 2.52
2810 5580 5.138125 TCACATGAAGCATTCCCTTTTTC 57.862 39.130 0.00 0.00 46.93 2.29
2868 5643 3.039011 GACCACCCATGTATACAGAGGT 58.961 50.000 19.22 19.22 36.11 3.85
2889 5664 9.610705 AGCCAAACATGCTCTATAATCTATATG 57.389 33.333 0.00 0.00 32.41 1.78
2890 5665 9.610705 CAGCCAAACATGCTCTATAATCTATAT 57.389 33.333 0.00 0.00 36.81 0.86
2891 5666 8.043113 CCAGCCAAACATGCTCTATAATCTATA 58.957 37.037 0.00 0.00 36.81 1.31
2892 5667 6.883217 CCAGCCAAACATGCTCTATAATCTAT 59.117 38.462 0.00 0.00 36.81 1.98
2893 5668 6.183361 ACCAGCCAAACATGCTCTATAATCTA 60.183 38.462 0.00 0.00 36.81 1.98
2894 5669 5.068636 CCAGCCAAACATGCTCTATAATCT 58.931 41.667 0.00 0.00 36.81 2.40
2895 5670 4.823989 ACCAGCCAAACATGCTCTATAATC 59.176 41.667 0.00 0.00 36.81 1.75
2896 5671 4.796606 ACCAGCCAAACATGCTCTATAAT 58.203 39.130 0.00 0.00 36.81 1.28
2897 5672 4.199310 GACCAGCCAAACATGCTCTATAA 58.801 43.478 0.00 0.00 36.81 0.98
2914 5689 8.842358 TTTTAGTATGTCTAGTTTTGGACCAG 57.158 34.615 0.00 0.00 34.17 4.00
2984 5759 5.975693 ACCTTCAGACACTTTTCACAAAA 57.024 34.783 0.00 0.00 0.00 2.44
2985 5760 5.975693 AACCTTCAGACACTTTTCACAAA 57.024 34.783 0.00 0.00 0.00 2.83
3008 5790 7.755666 AATATATAGGAGCCTAAAGCCATCA 57.244 36.000 0.00 0.00 45.47 3.07
3072 5854 1.553248 TCCACTTTCCCACCTGTATCG 59.447 52.381 0.00 0.00 0.00 2.92
3191 5998 6.258507 TCCCTCCGTAAACGCTTTTATATTTC 59.741 38.462 0.00 0.00 38.18 2.17
3200 6007 1.549203 TACTCCCTCCGTAAACGCTT 58.451 50.000 0.00 0.00 38.18 4.68
3213 6058 4.759516 TTTCGCTTTCACAAATACTCCC 57.240 40.909 0.00 0.00 0.00 4.30
3220 6065 2.356382 ACCGTGATTTCGCTTTCACAAA 59.644 40.909 10.59 0.00 41.85 2.83
3231 6076 6.140786 GGTTGAAACTTAAGACCGTGATTTC 58.859 40.000 10.09 7.41 0.00 2.17
3247 6092 3.726607 TCATTGCACAATGGGTTGAAAC 58.273 40.909 20.19 0.00 46.08 2.78
3261 6106 4.776795 TCGTTAGTACTGTCTCATTGCA 57.223 40.909 5.39 0.00 0.00 4.08
3272 6117 2.293677 CGAGATGCCCATCGTTAGTACT 59.706 50.000 0.00 0.00 42.48 2.73
3313 6163 4.161189 TCCCTTTCTCTGATCAACTAGCTG 59.839 45.833 0.00 0.00 0.00 4.24
3356 6206 4.367450 AGCTTTACTGCGCAATTTTTCAA 58.633 34.783 13.05 0.00 38.13 2.69
3370 6220 0.813184 TGCCGCTACGTAGCTTTACT 59.187 50.000 36.89 0.00 46.85 2.24
3375 6225 0.030369 GTATGTGCCGCTACGTAGCT 59.970 55.000 36.89 23.53 46.85 3.32
3416 6266 3.428870 CGAAACAGTGTCGCACTAATCTT 59.571 43.478 11.31 4.32 43.43 2.40
3496 7743 5.637387 ACTTAACAAAAAGCTGTTGTTGTGG 59.363 36.000 27.17 20.56 42.38 4.17
3498 7745 6.451393 TCACTTAACAAAAAGCTGTTGTTGT 58.549 32.000 27.17 18.97 44.68 3.32
3509 7756 6.318648 ACATGCACTCTCTCACTTAACAAAAA 59.681 34.615 0.00 0.00 0.00 1.94
3514 7761 3.124297 GCACATGCACTCTCTCACTTAAC 59.876 47.826 0.00 0.00 41.59 2.01
3516 7763 2.672195 CGCACATGCACTCTCTCACTTA 60.672 50.000 4.49 0.00 42.21 2.24
3519 7766 0.668706 ACGCACATGCACTCTCTCAC 60.669 55.000 4.49 0.00 42.21 3.51
3525 7772 0.248215 GGCAATACGCACATGCACTC 60.248 55.000 4.49 0.00 45.17 3.51
3635 7895 3.997021 AGGTCTTTGCGACATGAGTTTAG 59.003 43.478 0.00 0.00 44.68 1.85
3637 7897 2.851195 AGGTCTTTGCGACATGAGTTT 58.149 42.857 0.00 0.00 44.68 2.66
3742 8002 7.653311 AGCTTGTGAAACTGATTAAAACCATTC 59.347 33.333 0.00 0.00 38.04 2.67
3747 8007 6.972328 TGTCAGCTTGTGAAACTGATTAAAAC 59.028 34.615 0.00 0.00 42.08 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.