Multiple sequence alignment - TraesCS4D01G096800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G096800 chr4D 100.000 6086 0 0 1 6086 73382402 73388487 0.000000e+00 11239.0
1 TraesCS4D01G096800 chr4D 97.941 437 6 3 1 435 73374067 73374502 0.000000e+00 754.0
2 TraesCS4D01G096800 chr4D 97.712 437 8 2 1 435 294203413 294203849 0.000000e+00 750.0
3 TraesCS4D01G096800 chr4D 90.286 175 14 2 5709 5882 12520296 12520124 6.140000e-55 226.0
4 TraesCS4D01G096800 chr1D 97.474 4553 66 13 1574 6086 20970030 20974573 0.000000e+00 7725.0
5 TraesCS4D01G096800 chr1D 93.724 717 27 14 846 1559 20968341 20969042 0.000000e+00 1059.0
6 TraesCS4D01G096800 chr1D 91.772 158 13 0 5709 5866 463382061 463381904 2.860000e-53 220.0
7 TraesCS4D01G096800 chr1D 87.395 119 10 4 714 830 20968241 20968356 1.380000e-26 132.0
8 TraesCS4D01G096800 chr1B 94.433 2838 94 34 2835 5628 34323101 34325918 0.000000e+00 4307.0
9 TraesCS4D01G096800 chr1B 97.314 1266 26 2 1574 2839 34321814 34323071 0.000000e+00 2143.0
10 TraesCS4D01G096800 chr1B 86.569 886 58 36 697 1559 34319925 34320772 0.000000e+00 920.0
11 TraesCS4D01G096800 chr1B 94.196 224 13 0 5863 6086 34368264 34368487 5.840000e-90 342.0
12 TraesCS4D01G096800 chr1B 96.429 56 1 1 5625 5680 34326040 34326094 2.340000e-14 91.6
13 TraesCS4D01G096800 chr1B 97.959 49 1 0 3436 3484 263552371 263552323 1.090000e-12 86.1
14 TraesCS4D01G096800 chr2B 85.774 963 107 21 3898 4841 774718376 774717425 0.000000e+00 992.0
15 TraesCS4D01G096800 chr2B 84.735 963 106 20 3898 4840 744386348 744387289 0.000000e+00 926.0
16 TraesCS4D01G096800 chr2B 85.617 883 97 16 3975 4841 774946384 774945516 0.000000e+00 900.0
17 TraesCS4D01G096800 chr2B 82.027 1046 108 33 2446 3433 774947960 774946937 0.000000e+00 817.0
18 TraesCS4D01G096800 chr2B 81.256 1083 110 49 4413 5427 720806680 720807737 0.000000e+00 789.0
19 TraesCS4D01G096800 chr2B 87.121 528 65 3 1835 2362 720803321 720803845 4.060000e-166 595.0
20 TraesCS4D01G096800 chr2B 90.609 394 32 2 3043 3433 720805143 720805534 9.040000e-143 518.0
21 TraesCS4D01G096800 chr2B 85.288 469 57 6 3956 4413 720806053 720806520 1.990000e-129 473.0
22 TraesCS4D01G096800 chr2B 84.275 407 32 14 2438 2837 720804003 720804384 9.640000e-98 368.0
23 TraesCS4D01G096800 chr2B 90.494 263 18 4 1576 1833 744382981 744383241 2.100000e-89 340.0
24 TraesCS4D01G096800 chr2B 90.038 261 24 2 1576 1836 774720927 774720669 2.720000e-88 337.0
25 TraesCS4D01G096800 chr2B 84.527 349 31 13 3483 3822 720805531 720805865 2.120000e-84 324.0
26 TraesCS4D01G096800 chr2B 89.919 248 24 1 1574 1821 774948974 774948728 9.840000e-83 318.0
27 TraesCS4D01G096800 chr2B 78.679 530 69 25 945 1458 720800770 720801271 4.580000e-81 313.0
28 TraesCS4D01G096800 chr2B 90.741 216 19 1 3193 3408 774719015 774718801 2.780000e-73 287.0
29 TraesCS4D01G096800 chr2B 87.179 234 27 3 2835 3067 744384502 744384733 4.680000e-66 263.0
30 TraesCS4D01G096800 chr2B 83.333 264 30 7 2490 2746 774719847 774719591 1.320000e-56 231.0
31 TraesCS4D01G096800 chr2B 79.360 344 47 9 1929 2248 774948578 774948235 2.860000e-53 220.0
32 TraesCS4D01G096800 chr2B 83.843 229 37 0 2038 2266 744383534 744383762 1.030000e-52 219.0
33 TraesCS4D01G096800 chr2B 84.946 186 28 0 2044 2229 774720375 774720190 8.050000e-44 189.0
34 TraesCS4D01G096800 chr2B 81.604 212 26 4 2536 2746 744384155 744384354 4.880000e-36 163.0
35 TraesCS4D01G096800 chr2B 83.942 137 22 0 1902 2038 744383360 744383496 1.380000e-26 132.0
36 TraesCS4D01G096800 chr2B 83.969 131 21 0 1908 2038 774720550 774720420 6.400000e-25 126.0
37 TraesCS4D01G096800 chr2B 94.595 37 0 2 3916 3952 774946420 774946386 8.520000e-04 56.5
38 TraesCS4D01G096800 chr2D 84.084 1043 113 23 3898 4905 631241692 631240668 0.000000e+00 957.0
39 TraesCS4D01G096800 chr2D 85.341 880 102 14 3975 4841 631482068 631481203 0.000000e+00 885.0
40 TraesCS4D01G096800 chr2D 83.701 951 113 25 3975 4899 631803632 631804566 0.000000e+00 859.0
41 TraesCS4D01G096800 chr2D 87.412 707 66 13 3956 4649 593802598 593803294 0.000000e+00 791.0
42 TraesCS4D01G096800 chr2D 97.931 435 7 2 1 433 394326745 394327179 0.000000e+00 752.0
43 TraesCS4D01G096800 chr2D 79.924 1051 102 37 2446 3433 631483617 631482613 0.000000e+00 671.0
44 TraesCS4D01G096800 chr2D 86.704 534 58 5 2835 3356 631802570 631803102 1.140000e-161 580.0
45 TraesCS4D01G096800 chr2D 79.665 836 91 45 4666 5433 593803381 593804205 4.180000e-146 529.0
46 TraesCS4D01G096800 chr2D 85.086 409 39 11 2438 2836 593800903 593801299 1.230000e-106 398.0
47 TraesCS4D01G096800 chr2D 98.238 227 3 1 443 669 408516694 408516919 4.420000e-106 396.0
48 TraesCS4D01G096800 chr2D 92.337 261 18 2 1576 1836 631244614 631244356 2.680000e-98 370.0
49 TraesCS4D01G096800 chr2D 84.677 372 43 10 2835 3195 631243096 631242728 5.800000e-95 359.0
50 TraesCS4D01G096800 chr2D 91.188 261 23 0 2835 3095 593801332 593801592 7.500000e-94 355.0
51 TraesCS4D01G096800 chr2D 90.000 240 23 1 1576 1815 631801153 631801391 5.920000e-80 309.0
52 TraesCS4D01G096800 chr2D 90.254 236 22 1 1580 1815 631484828 631484594 2.130000e-79 307.0
53 TraesCS4D01G096800 chr2D 91.204 216 18 1 3193 3408 631242661 631242447 5.970000e-75 292.0
54 TraesCS4D01G096800 chr2D 88.889 234 24 2 1574 1807 593798602 593798833 2.780000e-73 287.0
55 TraesCS4D01G096800 chr2D 88.235 221 24 2 1574 1794 630949366 630949584 4.680000e-66 263.0
56 TraesCS4D01G096800 chr2D 78.261 391 60 10 1902 2267 631801519 631801909 1.710000e-55 228.0
57 TraesCS4D01G096800 chr2D 90.854 164 15 0 5709 5872 87407520 87407357 2.860000e-53 220.0
58 TraesCS4D01G096800 chr2D 84.375 224 35 0 2044 2267 631244058 631243835 2.860000e-53 220.0
59 TraesCS4D01G096800 chr2D 91.720 157 13 0 5709 5865 624365778 624365934 1.030000e-52 219.0
60 TraesCS4D01G096800 chr2D 91.083 157 14 0 5709 5865 362930964 362930808 4.780000e-51 213.0
61 TraesCS4D01G096800 chr2D 78.679 333 47 9 1929 2237 631484440 631484108 3.720000e-47 200.0
62 TraesCS4D01G096800 chr2D 79.537 259 29 15 2446 2692 631802171 631802417 4.880000e-36 163.0
63 TraesCS4D01G096800 chr2D 81.132 212 27 4 2536 2746 631243442 631243243 2.270000e-34 158.0
64 TraesCS4D01G096800 chr2D 86.131 137 19 0 1902 2038 631244239 631244103 1.370000e-31 148.0
65 TraesCS4D01G096800 chr2D 91.667 72 4 2 2372 2442 593800727 593800797 1.400000e-16 99.0
66 TraesCS4D01G096800 chr2D 90.625 64 6 0 3436 3499 164389735 164389798 1.090000e-12 86.1
67 TraesCS4D01G096800 chr2D 88.571 70 8 0 2768 2837 631802469 631802538 1.090000e-12 86.1
68 TraesCS4D01G096800 chr2D 87.273 55 2 3 3898 3952 631482119 631482070 2.370000e-04 58.4
69 TraesCS4D01G096800 chr2D 89.583 48 2 1 3898 3945 631803581 631803625 2.370000e-04 58.4
70 TraesCS4D01G096800 chr2A 84.485 883 108 16 3975 4840 760117096 760117966 0.000000e+00 845.0
71 TraesCS4D01G096800 chr2A 80.132 1057 118 47 2446 3433 760115518 760116551 0.000000e+00 704.0
72 TraesCS4D01G096800 chr2A 89.583 240 24 1 1576 1815 760114504 760114742 2.760000e-78 303.0
73 TraesCS4D01G096800 chr2A 88.688 221 23 2 1574 1794 760302762 760302544 1.010000e-67 268.0
74 TraesCS4D01G096800 chr2A 94.444 54 3 0 3420 3473 47830072 47830125 3.910000e-12 84.2
75 TraesCS4D01G096800 chr2A 89.062 64 7 0 3436 3499 186443850 186443787 5.060000e-11 80.5
76 TraesCS4D01G096800 chr2A 100.000 30 0 0 3916 3945 760117060 760117089 8.520000e-04 56.5
77 TraesCS4D01G096800 chrUn 98.398 437 5 2 1 435 468995372 468995808 0.000000e+00 767.0
78 TraesCS4D01G096800 chrUn 92.308 156 12 0 5710 5865 96473990 96474145 7.940000e-54 222.0
79 TraesCS4D01G096800 chr7D 97.941 437 6 3 1 435 272510122 272509687 0.000000e+00 754.0
80 TraesCS4D01G096800 chr7D 97.931 435 7 1 1 433 299113225 299113659 0.000000e+00 752.0
81 TraesCS4D01G096800 chr7D 95.833 240 8 2 430 669 421832254 421832017 2.660000e-103 387.0
82 TraesCS4D01G096800 chr6D 97.712 437 8 2 1 435 137194787 137195223 0.000000e+00 750.0
83 TraesCS4D01G096800 chr6D 95.436 241 9 2 428 668 93980678 93980916 3.440000e-102 383.0
84 TraesCS4D01G096800 chr6D 95.082 244 8 4 430 673 376754371 376754610 1.240000e-101 381.0
85 TraesCS4D01G096800 chr3D 97.712 437 8 2 1 435 485429315 485429751 0.000000e+00 750.0
86 TraesCS4D01G096800 chr3D 96.659 449 11 4 1 446 66988262 66988709 0.000000e+00 743.0
87 TraesCS4D01G096800 chr3B 96.234 239 7 2 430 668 368958304 368958540 2.060000e-104 390.0
88 TraesCS4D01G096800 chr3A 96.234 239 7 2 430 668 449787558 449787794 2.060000e-104 390.0
89 TraesCS4D01G096800 chr3A 76.712 146 27 6 2647 2788 102526120 102526262 2.350000e-09 75.0
90 TraesCS4D01G096800 chr3A 76.027 146 28 6 2647 2788 102475281 102475423 1.090000e-07 69.4
91 TraesCS4D01G096800 chr1A 95.851 241 8 2 430 670 289306043 289306281 7.400000e-104 388.0
92 TraesCS4D01G096800 chr1A 91.975 162 13 0 5705 5866 496854319 496854480 1.710000e-55 228.0
93 TraesCS4D01G096800 chr1A 97.959 49 1 0 3436 3484 221699808 221699760 1.090000e-12 86.1
94 TraesCS4D01G096800 chr4A 95.833 240 9 1 430 669 414407477 414407715 2.660000e-103 387.0
95 TraesCS4D01G096800 chr6A 95.816 239 8 2 430 668 150230801 150230565 9.570000e-103 385.0
96 TraesCS4D01G096800 chr7B 92.994 157 10 1 5709 5865 659420771 659420926 1.710000e-55 228.0
97 TraesCS4D01G096800 chr7B 97.959 49 1 0 3436 3484 3177926 3177878 1.090000e-12 86.1
98 TraesCS4D01G096800 chr4B 91.667 60 5 0 3422 3481 255392146 255392205 3.910000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G096800 chr4D 73382402 73388487 6085 False 11239.000000 11239 100.000000 1 6086 1 chr4D.!!$F2 6085
1 TraesCS4D01G096800 chr1D 20968241 20974573 6332 False 2972.000000 7725 92.864333 714 6086 3 chr1D.!!$F1 5372
2 TraesCS4D01G096800 chr1B 34319925 34326094 6169 False 1865.400000 4307 93.686250 697 5680 4 chr1B.!!$F2 4983
3 TraesCS4D01G096800 chr2B 720800770 720807737 6967 False 482.857143 789 84.536429 945 5427 7 chr2B.!!$F1 4482
4 TraesCS4D01G096800 chr2B 774945516 774948974 3458 True 462.300000 900 86.303600 1574 4841 5 chr2B.!!$R2 3267
5 TraesCS4D01G096800 chr2B 774717425 774720927 3502 True 360.333333 992 86.466833 1576 4841 6 chr2B.!!$R1 3265
6 TraesCS4D01G096800 chr2B 744382981 744387289 4308 False 340.500000 926 85.299500 1576 4840 6 chr2B.!!$F2 3264
7 TraesCS4D01G096800 chr2D 631481203 631484828 3625 True 424.280000 885 84.294200 1580 4841 5 chr2D.!!$R4 3261
8 TraesCS4D01G096800 chr2D 593798602 593804205 5603 False 409.833333 791 87.317833 1574 5433 6 chr2D.!!$F6 3859
9 TraesCS4D01G096800 chr2D 631240668 631244614 3946 True 357.714286 957 86.277143 1576 4905 7 chr2D.!!$R3 3329
10 TraesCS4D01G096800 chr2D 631801153 631804566 3413 False 326.214286 859 85.193857 1576 4899 7 chr2D.!!$F7 3323
11 TraesCS4D01G096800 chr2A 760114504 760117966 3462 False 477.125000 845 88.550000 1576 4840 4 chr2A.!!$F2 3264

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
331 332 0.033991 CTCTCTCCGAGGGTCCTTGA 60.034 60.000 5.84 0.00 36.06 3.02 F
332 333 0.033991 TCTCTCCGAGGGTCCTTGAG 60.034 60.000 5.84 8.15 0.00 3.02 F
338 339 0.035458 CGAGGGTCCTTGAGTTGCTT 59.965 55.000 0.00 0.00 0.00 3.91 F
520 521 0.671251 TGCATGTTCCACCGGAAAAC 59.329 50.000 9.46 9.94 43.86 2.43 F
521 522 0.671251 GCATGTTCCACCGGAAAACA 59.329 50.000 9.46 15.61 43.86 2.83 F
672 673 0.954452 CCATTTTCATCCCTAGCGCC 59.046 55.000 2.29 0.00 0.00 6.53 F
830 839 1.000717 GCACCAAATAAACCACAGCGT 60.001 47.619 0.00 0.00 0.00 5.07 F
914 925 1.067000 CCCGCTTGCATTCCAATTTCA 60.067 47.619 0.00 0.00 31.91 2.69 F
3315 7433 1.946768 TGCTGTTTCCTTTGACTTCCG 59.053 47.619 0.00 0.00 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1560 1654 0.976641 TGCTAGTCCACACAAGGAGG 59.023 55.000 0.00 0.00 38.64 4.30 R
1561 1655 1.620819 ACTGCTAGTCCACACAAGGAG 59.379 52.381 0.00 0.00 38.64 3.69 R
1562 1656 1.717032 ACTGCTAGTCCACACAAGGA 58.283 50.000 0.00 0.00 34.64 3.36 R
1587 2809 2.030091 CACATCTGATTGTACAGCAGCG 59.970 50.000 18.04 14.61 37.75 5.18 R
3315 7433 4.038402 CCAGTTTGGGATAGATGGAATTGC 59.962 45.833 0.00 0.00 32.67 3.56 R
4024 9436 9.783256 GAAACTTAACAACTCTGTTACACATTT 57.217 29.630 0.00 0.00 45.57 2.32 R
4794 10473 1.950828 TTACCGTAGCTCTCTCTCCG 58.049 55.000 0.00 0.00 0.00 4.63 R
4841 10520 9.875691 GTATGGAAGTACATATCATTCATGCTA 57.124 33.333 0.00 0.00 35.91 3.49 R
5259 10997 1.094785 CAAGTGGTAAAGCCCCATCG 58.905 55.000 0.00 0.00 33.76 3.84 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 9.916360 AGATAAAATAAATTTTCCCCGTCTAGT 57.084 29.630 4.02 0.00 40.24 2.57
31 32 9.743581 AAAATAAATTTTCCCCGTCTAGTTAGA 57.256 29.630 0.00 0.00 35.18 2.10
32 33 9.743581 AAATAAATTTTCCCCGTCTAGTTAGAA 57.256 29.630 0.00 0.00 33.47 2.10
33 34 9.743581 AATAAATTTTCCCCGTCTAGTTAGAAA 57.256 29.630 0.00 0.00 33.47 2.52
34 35 9.743581 ATAAATTTTCCCCGTCTAGTTAGAAAA 57.256 29.630 0.00 0.00 37.54 2.29
35 36 8.645814 AAATTTTCCCCGTCTAGTTAGAAAAT 57.354 30.769 0.00 0.00 42.60 1.82
36 37 7.860918 ATTTTCCCCGTCTAGTTAGAAAATC 57.139 36.000 0.00 0.00 38.77 2.17
37 38 6.616237 TTTCCCCGTCTAGTTAGAAAATCT 57.384 37.500 0.00 0.00 33.47 2.40
38 39 7.722949 TTTCCCCGTCTAGTTAGAAAATCTA 57.277 36.000 0.00 0.00 33.47 1.98
39 40 6.956202 TCCCCGTCTAGTTAGAAAATCTAG 57.044 41.667 0.00 0.00 33.47 2.43
40 41 6.666678 TCCCCGTCTAGTTAGAAAATCTAGA 58.333 40.000 0.00 0.00 38.12 2.43
41 42 7.121382 TCCCCGTCTAGTTAGAAAATCTAGAA 58.879 38.462 0.00 0.00 40.79 2.10
42 43 7.783596 TCCCCGTCTAGTTAGAAAATCTAGAAT 59.216 37.037 0.00 0.00 40.79 2.40
43 44 9.075678 CCCCGTCTAGTTAGAAAATCTAGAATA 57.924 37.037 0.00 0.00 40.79 1.75
52 53 9.886132 GTTAGAAAATCTAGAATAGGGTGAACA 57.114 33.333 0.00 0.00 39.78 3.18
55 56 9.981460 AGAAAATCTAGAATAGGGTGAACATTT 57.019 29.630 0.00 0.00 39.78 2.32
103 104 8.999220 TGAAAACATGCAATATTTCTAATGCA 57.001 26.923 17.09 1.45 45.33 3.96
104 105 9.433153 TGAAAACATGCAATATTTCTAATGCAA 57.567 25.926 17.09 0.04 44.63 4.08
137 138 9.658799 TTGCAAATAAAATCCGAATAAAATCCA 57.341 25.926 0.00 0.00 0.00 3.41
138 139 9.658799 TGCAAATAAAATCCGAATAAAATCCAA 57.341 25.926 0.00 0.00 0.00 3.53
181 182 9.581289 TTCCTCTAGTATTTCAATTGTTTTGGA 57.419 29.630 5.13 0.00 0.00 3.53
182 183 9.231297 TCCTCTAGTATTTCAATTGTTTTGGAG 57.769 33.333 5.13 4.08 0.00 3.86
183 184 9.231297 CCTCTAGTATTTCAATTGTTTTGGAGA 57.769 33.333 5.13 1.69 0.00 3.71
188 189 8.912988 AGTATTTCAATTGTTTTGGAGAAGTCA 58.087 29.630 5.13 0.00 0.00 3.41
189 190 9.696917 GTATTTCAATTGTTTTGGAGAAGTCAT 57.303 29.630 5.13 0.00 0.00 3.06
206 207 9.612066 GAGAAGTCATATTTTCTCCTCTCATTT 57.388 33.333 8.98 0.00 42.10 2.32
274 275 9.855021 AAACCAAAATCCTCGTCTTATTATTTG 57.145 29.630 0.00 0.00 0.00 2.32
275 276 8.801882 ACCAAAATCCTCGTCTTATTATTTGA 57.198 30.769 0.00 0.00 0.00 2.69
276 277 9.408648 ACCAAAATCCTCGTCTTATTATTTGAT 57.591 29.630 0.00 0.00 0.00 2.57
277 278 9.669353 CCAAAATCCTCGTCTTATTATTTGATG 57.331 33.333 0.00 0.00 0.00 3.07
308 309 9.801873 TCAAATATGAAAATTCGAGAAAATCCC 57.198 29.630 0.00 0.00 30.99 3.85
309 310 9.034544 CAAATATGAAAATTCGAGAAAATCCCC 57.965 33.333 0.00 0.00 0.00 4.81
310 311 7.896383 ATATGAAAATTCGAGAAAATCCCCA 57.104 32.000 0.00 0.00 0.00 4.96
311 312 6.603940 ATGAAAATTCGAGAAAATCCCCAA 57.396 33.333 0.00 0.00 0.00 4.12
312 313 5.778862 TGAAAATTCGAGAAAATCCCCAAC 58.221 37.500 0.00 0.00 0.00 3.77
313 314 5.538433 TGAAAATTCGAGAAAATCCCCAACT 59.462 36.000 0.00 0.00 0.00 3.16
314 315 5.644977 AAATTCGAGAAAATCCCCAACTC 57.355 39.130 0.00 0.00 0.00 3.01
315 316 4.576330 ATTCGAGAAAATCCCCAACTCT 57.424 40.909 0.00 0.00 0.00 3.24
316 317 3.611766 TCGAGAAAATCCCCAACTCTC 57.388 47.619 0.00 0.00 0.00 3.20
317 318 3.173965 TCGAGAAAATCCCCAACTCTCT 58.826 45.455 0.00 0.00 32.13 3.10
318 319 3.195825 TCGAGAAAATCCCCAACTCTCTC 59.804 47.826 0.00 0.00 32.13 3.20
319 320 3.680196 CGAGAAAATCCCCAACTCTCTCC 60.680 52.174 0.00 0.00 32.13 3.71
320 321 2.237392 AGAAAATCCCCAACTCTCTCCG 59.763 50.000 0.00 0.00 0.00 4.63
321 322 1.952621 AAATCCCCAACTCTCTCCGA 58.047 50.000 0.00 0.00 0.00 4.55
322 323 1.490574 AATCCCCAACTCTCTCCGAG 58.509 55.000 0.00 0.00 45.56 4.63
323 324 0.397816 ATCCCCAACTCTCTCCGAGG 60.398 60.000 0.00 0.00 44.33 4.63
324 325 2.060980 CCCCAACTCTCTCCGAGGG 61.061 68.421 0.00 0.00 44.33 4.30
325 326 1.305381 CCCAACTCTCTCCGAGGGT 60.305 63.158 0.00 0.00 46.42 4.34
326 327 1.324005 CCCAACTCTCTCCGAGGGTC 61.324 65.000 0.00 0.00 43.29 4.46
327 328 1.324005 CCAACTCTCTCCGAGGGTCC 61.324 65.000 0.00 0.00 43.29 4.46
328 329 0.323908 CAACTCTCTCCGAGGGTCCT 60.324 60.000 0.00 0.00 43.29 3.85
329 330 0.410270 AACTCTCTCCGAGGGTCCTT 59.590 55.000 0.00 0.00 43.29 3.36
330 331 0.323908 ACTCTCTCCGAGGGTCCTTG 60.324 60.000 0.00 0.00 39.45 3.61
331 332 0.033991 CTCTCTCCGAGGGTCCTTGA 60.034 60.000 5.84 0.00 36.06 3.02
332 333 0.033991 TCTCTCCGAGGGTCCTTGAG 60.034 60.000 5.84 8.15 0.00 3.02
333 334 0.323908 CTCTCCGAGGGTCCTTGAGT 60.324 60.000 5.84 0.00 31.48 3.41
334 335 0.114560 TCTCCGAGGGTCCTTGAGTT 59.885 55.000 5.84 0.00 31.48 3.01
335 336 0.247736 CTCCGAGGGTCCTTGAGTTG 59.752 60.000 5.84 0.00 0.00 3.16
336 337 1.376037 CCGAGGGTCCTTGAGTTGC 60.376 63.158 5.84 0.00 0.00 4.17
337 338 1.674057 CGAGGGTCCTTGAGTTGCT 59.326 57.895 0.00 0.00 0.00 3.91
338 339 0.035458 CGAGGGTCCTTGAGTTGCTT 59.965 55.000 0.00 0.00 0.00 3.91
339 340 1.275291 CGAGGGTCCTTGAGTTGCTTA 59.725 52.381 0.00 0.00 0.00 3.09
340 341 2.675317 CGAGGGTCCTTGAGTTGCTTAG 60.675 54.545 0.00 0.00 0.00 2.18
341 342 1.630878 AGGGTCCTTGAGTTGCTTAGG 59.369 52.381 0.00 0.00 0.00 2.69
342 343 1.628846 GGGTCCTTGAGTTGCTTAGGA 59.371 52.381 0.00 0.00 34.50 2.94
343 344 2.239907 GGGTCCTTGAGTTGCTTAGGAT 59.760 50.000 0.00 0.00 38.92 3.24
344 345 3.308473 GGGTCCTTGAGTTGCTTAGGATT 60.308 47.826 0.00 0.00 38.92 3.01
345 346 4.336280 GGTCCTTGAGTTGCTTAGGATTT 58.664 43.478 0.00 0.00 38.92 2.17
346 347 5.497474 GGTCCTTGAGTTGCTTAGGATTTA 58.503 41.667 0.00 0.00 38.92 1.40
347 348 6.122964 GGTCCTTGAGTTGCTTAGGATTTAT 58.877 40.000 0.00 0.00 38.92 1.40
348 349 6.261158 GGTCCTTGAGTTGCTTAGGATTTATC 59.739 42.308 0.00 0.00 38.92 1.75
349 350 6.018669 GTCCTTGAGTTGCTTAGGATTTATCG 60.019 42.308 0.00 0.00 38.92 2.92
350 351 6.049149 CCTTGAGTTGCTTAGGATTTATCGA 58.951 40.000 0.00 0.00 0.00 3.59
351 352 6.201806 CCTTGAGTTGCTTAGGATTTATCGAG 59.798 42.308 0.00 0.00 0.00 4.04
352 353 5.601662 TGAGTTGCTTAGGATTTATCGAGG 58.398 41.667 0.00 0.00 0.00 4.63
353 354 5.362717 TGAGTTGCTTAGGATTTATCGAGGA 59.637 40.000 0.00 0.00 0.00 3.71
354 355 6.042093 TGAGTTGCTTAGGATTTATCGAGGAT 59.958 38.462 0.00 0.00 0.00 3.24
355 356 6.831976 AGTTGCTTAGGATTTATCGAGGATT 58.168 36.000 0.00 0.00 0.00 3.01
356 357 7.283329 AGTTGCTTAGGATTTATCGAGGATTT 58.717 34.615 0.00 0.00 0.00 2.17
357 358 7.227512 AGTTGCTTAGGATTTATCGAGGATTTG 59.772 37.037 0.00 0.00 0.00 2.32
358 359 6.591935 TGCTTAGGATTTATCGAGGATTTGT 58.408 36.000 0.00 0.00 0.00 2.83
359 360 6.706270 TGCTTAGGATTTATCGAGGATTTGTC 59.294 38.462 0.00 0.00 0.00 3.18
360 361 6.706270 GCTTAGGATTTATCGAGGATTTGTCA 59.294 38.462 0.00 0.00 0.00 3.58
361 362 7.226720 GCTTAGGATTTATCGAGGATTTGTCAA 59.773 37.037 0.00 0.00 0.00 3.18
362 363 9.109393 CTTAGGATTTATCGAGGATTTGTCAAA 57.891 33.333 0.00 0.00 0.00 2.69
363 364 7.938140 AGGATTTATCGAGGATTTGTCAAAA 57.062 32.000 1.31 0.00 0.00 2.44
364 365 8.525290 AGGATTTATCGAGGATTTGTCAAAAT 57.475 30.769 1.31 0.00 38.74 1.82
365 366 8.408601 AGGATTTATCGAGGATTTGTCAAAATG 58.591 33.333 1.31 0.00 36.10 2.32
366 367 7.168135 GGATTTATCGAGGATTTGTCAAAATGC 59.832 37.037 1.31 0.00 42.66 3.56
367 368 6.507958 TTATCGAGGATTTGTCAAAATGCA 57.492 33.333 1.31 0.00 44.23 3.96
368 369 4.844998 TCGAGGATTTGTCAAAATGCAA 57.155 36.364 1.31 0.00 44.23 4.08
369 370 5.389859 TCGAGGATTTGTCAAAATGCAAT 57.610 34.783 1.31 0.00 44.23 3.56
370 371 6.507958 TCGAGGATTTGTCAAAATGCAATA 57.492 33.333 1.31 0.00 44.23 1.90
371 372 6.918626 TCGAGGATTTGTCAAAATGCAATAA 58.081 32.000 1.31 0.00 44.23 1.40
372 373 7.374272 TCGAGGATTTGTCAAAATGCAATAAA 58.626 30.769 1.31 0.00 44.23 1.40
373 374 7.869937 TCGAGGATTTGTCAAAATGCAATAAAA 59.130 29.630 1.31 0.00 44.23 1.52
374 375 8.658609 CGAGGATTTGTCAAAATGCAATAAAAT 58.341 29.630 1.31 0.00 44.23 1.82
437 438 7.489574 TGAAAATTTGGGATGTTACAAAAGC 57.510 32.000 0.00 0.00 39.69 3.51
438 439 7.050377 TGAAAATTTGGGATGTTACAAAAGCA 58.950 30.769 0.00 0.00 39.69 3.91
439 440 7.226325 TGAAAATTTGGGATGTTACAAAAGCAG 59.774 33.333 0.00 0.00 39.69 4.24
440 441 3.658757 TTGGGATGTTACAAAAGCAGC 57.341 42.857 0.00 0.00 0.00 5.25
441 442 2.875296 TGGGATGTTACAAAAGCAGCT 58.125 42.857 0.00 0.00 0.00 4.24
442 443 4.027674 TGGGATGTTACAAAAGCAGCTA 57.972 40.909 0.00 0.00 0.00 3.32
443 444 4.599041 TGGGATGTTACAAAAGCAGCTAT 58.401 39.130 0.00 0.00 0.00 2.97
444 445 5.750524 TGGGATGTTACAAAAGCAGCTATA 58.249 37.500 0.00 0.00 0.00 1.31
445 446 5.822519 TGGGATGTTACAAAAGCAGCTATAG 59.177 40.000 0.00 0.00 0.00 1.31
446 447 5.239525 GGGATGTTACAAAAGCAGCTATAGG 59.760 44.000 0.00 0.00 0.00 2.57
447 448 5.823045 GGATGTTACAAAAGCAGCTATAGGT 59.177 40.000 0.00 0.00 0.00 3.08
448 449 6.017852 GGATGTTACAAAAGCAGCTATAGGTC 60.018 42.308 0.26 0.00 0.00 3.85
449 450 6.049955 TGTTACAAAAGCAGCTATAGGTCT 57.950 37.500 0.26 0.08 0.00 3.85
450 451 7.177832 TGTTACAAAAGCAGCTATAGGTCTA 57.822 36.000 0.26 0.00 0.00 2.59
451 452 7.792032 TGTTACAAAAGCAGCTATAGGTCTAT 58.208 34.615 0.26 0.00 0.00 1.98
452 453 8.920174 TGTTACAAAAGCAGCTATAGGTCTATA 58.080 33.333 0.26 0.00 0.00 1.31
453 454 9.413048 GTTACAAAAGCAGCTATAGGTCTATAG 57.587 37.037 16.64 16.64 44.80 1.31
454 455 7.604657 ACAAAAGCAGCTATAGGTCTATAGT 57.395 36.000 20.02 9.23 44.19 2.12
455 456 8.707796 ACAAAAGCAGCTATAGGTCTATAGTA 57.292 34.615 20.02 0.00 44.19 1.82
456 457 9.144298 ACAAAAGCAGCTATAGGTCTATAGTAA 57.856 33.333 20.02 0.00 44.19 2.24
457 458 9.982651 CAAAAGCAGCTATAGGTCTATAGTAAA 57.017 33.333 20.02 0.00 44.19 2.01
460 461 9.984190 AAGCAGCTATAGGTCTATAGTAAAAAC 57.016 33.333 20.02 7.83 44.19 2.43
461 462 9.144298 AGCAGCTATAGGTCTATAGTAAAAACA 57.856 33.333 20.02 0.00 44.19 2.83
462 463 9.413048 GCAGCTATAGGTCTATAGTAAAAACAG 57.587 37.037 20.02 6.54 44.19 3.16
478 479 9.840427 AGTAAAAACAGAAATTCCATATTCACG 57.160 29.630 0.00 0.00 0.00 4.35
479 480 9.072294 GTAAAAACAGAAATTCCATATTCACGG 57.928 33.333 0.00 0.00 0.00 4.94
480 481 7.461182 AAAACAGAAATTCCATATTCACGGA 57.539 32.000 0.00 0.00 0.00 4.69
481 482 7.461182 AAACAGAAATTCCATATTCACGGAA 57.539 32.000 0.00 0.00 45.12 4.30
482 483 7.461182 AACAGAAATTCCATATTCACGGAAA 57.539 32.000 0.00 0.00 44.25 3.13
483 484 6.852664 ACAGAAATTCCATATTCACGGAAAC 58.147 36.000 0.00 0.00 44.25 2.78
500 501 4.877282 GGAAACGAAATGTTCCATTTCCA 58.123 39.130 18.87 0.00 43.83 3.53
501 502 5.478407 GGAAACGAAATGTTCCATTTCCAT 58.522 37.500 18.87 8.81 43.83 3.41
502 503 5.348451 GGAAACGAAATGTTCCATTTCCATG 59.652 40.000 18.87 10.85 43.83 3.66
503 504 3.848726 ACGAAATGTTCCATTTCCATGC 58.151 40.909 18.87 1.36 35.27 4.06
504 505 3.257873 ACGAAATGTTCCATTTCCATGCA 59.742 39.130 18.87 0.00 35.27 3.96
505 506 4.081531 ACGAAATGTTCCATTTCCATGCAT 60.082 37.500 18.87 0.00 35.27 3.96
506 507 4.269123 CGAAATGTTCCATTTCCATGCATG 59.731 41.667 20.19 20.19 35.27 4.06
507 508 4.829872 AATGTTCCATTTCCATGCATGT 57.170 36.364 24.58 3.69 0.00 3.21
508 509 4.829872 ATGTTCCATTTCCATGCATGTT 57.170 36.364 24.58 4.54 0.00 2.71
509 510 4.191033 TGTTCCATTTCCATGCATGTTC 57.809 40.909 24.58 5.42 0.00 3.18
510 511 3.055963 TGTTCCATTTCCATGCATGTTCC 60.056 43.478 24.58 3.51 0.00 3.62
511 512 2.817665 TCCATTTCCATGCATGTTCCA 58.182 42.857 24.58 6.74 0.00 3.53
512 513 2.496871 TCCATTTCCATGCATGTTCCAC 59.503 45.455 24.58 0.00 0.00 4.02
513 514 2.419021 CCATTTCCATGCATGTTCCACC 60.419 50.000 24.58 0.00 0.00 4.61
514 515 0.887247 TTTCCATGCATGTTCCACCG 59.113 50.000 24.58 8.13 0.00 4.94
515 516 0.964860 TTCCATGCATGTTCCACCGG 60.965 55.000 24.58 0.00 0.00 5.28
516 517 1.378382 CCATGCATGTTCCACCGGA 60.378 57.895 24.58 0.00 0.00 5.14
517 518 0.964860 CCATGCATGTTCCACCGGAA 60.965 55.000 24.58 0.00 39.66 4.30
518 519 0.887247 CATGCATGTTCCACCGGAAA 59.113 50.000 18.91 0.00 43.86 3.13
519 520 1.271934 CATGCATGTTCCACCGGAAAA 59.728 47.619 18.91 0.00 43.86 2.29
520 521 0.671251 TGCATGTTCCACCGGAAAAC 59.329 50.000 9.46 9.94 43.86 2.43
521 522 0.671251 GCATGTTCCACCGGAAAACA 59.329 50.000 9.46 15.61 43.86 2.83
522 523 1.601914 GCATGTTCCACCGGAAAACAC 60.602 52.381 9.46 0.00 43.86 3.32
523 524 1.000717 CATGTTCCACCGGAAAACACC 60.001 52.381 9.46 0.00 43.86 4.16
533 534 2.565210 GGAAAACACCGTTCCGTTTT 57.435 45.000 0.00 0.00 45.46 2.43
534 535 2.878580 GGAAAACACCGTTCCGTTTTT 58.121 42.857 0.00 0.00 43.46 1.94
535 536 2.599527 GGAAAACACCGTTCCGTTTTTG 59.400 45.455 0.00 0.00 43.46 2.44
536 537 3.244156 GAAAACACCGTTCCGTTTTTGT 58.756 40.909 0.00 0.00 43.46 2.83
537 538 3.300852 AAACACCGTTCCGTTTTTGTT 57.699 38.095 0.00 0.00 31.38 2.83
538 539 3.300852 AACACCGTTCCGTTTTTGTTT 57.699 38.095 0.00 0.00 0.00 2.83
539 540 2.866198 ACACCGTTCCGTTTTTGTTTC 58.134 42.857 0.00 0.00 0.00 2.78
540 541 2.186891 CACCGTTCCGTTTTTGTTTCC 58.813 47.619 0.00 0.00 0.00 3.13
541 542 1.202166 ACCGTTCCGTTTTTGTTTCCG 60.202 47.619 0.00 0.00 0.00 4.30
542 543 1.202166 CCGTTCCGTTTTTGTTTCCGT 60.202 47.619 0.00 0.00 0.00 4.69
543 544 2.517935 CGTTCCGTTTTTGTTTCCGTT 58.482 42.857 0.00 0.00 0.00 4.44
544 545 2.916089 CGTTCCGTTTTTGTTTCCGTTT 59.084 40.909 0.00 0.00 0.00 3.60
545 546 3.001856 CGTTCCGTTTTTGTTTCCGTTTC 60.002 43.478 0.00 0.00 0.00 2.78
546 547 3.148026 TCCGTTTTTGTTTCCGTTTCC 57.852 42.857 0.00 0.00 0.00 3.13
547 548 1.847390 CCGTTTTTGTTTCCGTTTCCG 59.153 47.619 0.00 0.00 0.00 4.30
548 549 1.253289 CGTTTTTGTTTCCGTTTCCGC 59.747 47.619 0.00 0.00 0.00 5.54
549 550 2.260481 GTTTTTGTTTCCGTTTCCGCA 58.740 42.857 0.00 0.00 0.00 5.69
550 551 2.861335 GTTTTTGTTTCCGTTTCCGCAT 59.139 40.909 0.00 0.00 0.00 4.73
551 552 3.984508 TTTTGTTTCCGTTTCCGCATA 57.015 38.095 0.00 0.00 0.00 3.14
552 553 3.984508 TTTGTTTCCGTTTCCGCATAA 57.015 38.095 0.00 0.00 0.00 1.90
553 554 3.984508 TTGTTTCCGTTTCCGCATAAA 57.015 38.095 0.00 0.00 0.00 1.40
554 555 3.984508 TGTTTCCGTTTCCGCATAAAA 57.015 38.095 0.00 0.00 0.00 1.52
555 556 4.303086 TGTTTCCGTTTCCGCATAAAAA 57.697 36.364 0.00 0.00 0.00 1.94
575 576 5.545063 AAAAATTCCATTTCCACTTCCGT 57.455 34.783 0.00 0.00 0.00 4.69
576 577 5.545063 AAAATTCCATTTCCACTTCCGTT 57.455 34.783 0.00 0.00 0.00 4.44
577 578 5.545063 AAATTCCATTTCCACTTCCGTTT 57.455 34.783 0.00 0.00 0.00 3.60
578 579 5.545063 AATTCCATTTCCACTTCCGTTTT 57.455 34.783 0.00 0.00 0.00 2.43
579 580 4.314740 TTCCATTTCCACTTCCGTTTTG 57.685 40.909 0.00 0.00 0.00 2.44
580 581 2.035321 TCCATTTCCACTTCCGTTTTGC 59.965 45.455 0.00 0.00 0.00 3.68
581 582 2.223923 CCATTTCCACTTCCGTTTTGCA 60.224 45.455 0.00 0.00 0.00 4.08
582 583 3.452474 CATTTCCACTTCCGTTTTGCAA 58.548 40.909 0.00 0.00 0.00 4.08
583 584 3.594603 TTTCCACTTCCGTTTTGCAAA 57.405 38.095 8.05 8.05 0.00 3.68
584 585 3.810310 TTCCACTTCCGTTTTGCAAAT 57.190 38.095 13.65 0.00 0.00 2.32
585 586 3.810310 TCCACTTCCGTTTTGCAAATT 57.190 38.095 13.65 0.00 0.00 1.82
586 587 4.130286 TCCACTTCCGTTTTGCAAATTT 57.870 36.364 13.65 0.00 0.00 1.82
587 588 4.116238 TCCACTTCCGTTTTGCAAATTTC 58.884 39.130 13.65 6.13 0.00 2.17
588 589 3.247411 CCACTTCCGTTTTGCAAATTTCC 59.753 43.478 13.65 0.92 0.00 3.13
589 590 3.060607 CACTTCCGTTTTGCAAATTTCCG 60.061 43.478 13.65 12.41 0.00 4.30
590 591 2.873133 TCCGTTTTGCAAATTTCCGT 57.127 40.000 13.65 0.00 0.00 4.69
591 592 3.166489 TCCGTTTTGCAAATTTCCGTT 57.834 38.095 13.65 0.00 0.00 4.44
592 593 3.522553 TCCGTTTTGCAAATTTCCGTTT 58.477 36.364 13.65 0.00 0.00 3.60
593 594 3.552294 TCCGTTTTGCAAATTTCCGTTTC 59.448 39.130 13.65 0.00 0.00 2.78
594 595 3.302805 CCGTTTTGCAAATTTCCGTTTCC 60.303 43.478 13.65 0.00 0.00 3.13
595 596 3.600460 CGTTTTGCAAATTTCCGTTTCCG 60.600 43.478 13.65 0.00 0.00 4.30
596 597 2.873133 TTGCAAATTTCCGTTTCCGT 57.127 40.000 0.00 0.00 0.00 4.69
597 598 2.873133 TGCAAATTTCCGTTTCCGTT 57.127 40.000 0.00 0.00 0.00 4.44
598 599 3.166489 TGCAAATTTCCGTTTCCGTTT 57.834 38.095 0.00 0.00 0.00 3.60
599 600 3.522553 TGCAAATTTCCGTTTCCGTTTT 58.477 36.364 0.00 0.00 0.00 2.43
600 601 3.552294 TGCAAATTTCCGTTTCCGTTTTC 59.448 39.130 0.00 0.00 0.00 2.29
601 602 3.552294 GCAAATTTCCGTTTCCGTTTTCA 59.448 39.130 0.00 0.00 0.00 2.69
602 603 4.210328 GCAAATTTCCGTTTCCGTTTTCAT 59.790 37.500 0.00 0.00 0.00 2.57
603 604 5.402867 GCAAATTTCCGTTTCCGTTTTCATA 59.597 36.000 0.00 0.00 0.00 2.15
604 605 6.090223 GCAAATTTCCGTTTCCGTTTTCATAT 59.910 34.615 0.00 0.00 0.00 1.78
605 606 7.359681 GCAAATTTCCGTTTCCGTTTTCATATT 60.360 33.333 0.00 0.00 0.00 1.28
606 607 8.491950 CAAATTTCCGTTTCCGTTTTCATATTT 58.508 29.630 0.00 0.00 0.00 1.40
607 608 8.596271 AATTTCCGTTTCCGTTTTCATATTTT 57.404 26.923 0.00 0.00 0.00 1.82
608 609 7.626144 TTTCCGTTTCCGTTTTCATATTTTC 57.374 32.000 0.00 0.00 0.00 2.29
609 610 6.563222 TCCGTTTCCGTTTTCATATTTTCT 57.437 33.333 0.00 0.00 0.00 2.52
610 611 6.604930 TCCGTTTCCGTTTTCATATTTTCTC 58.395 36.000 0.00 0.00 0.00 2.87
611 612 6.428771 TCCGTTTCCGTTTTCATATTTTCTCT 59.571 34.615 0.00 0.00 0.00 3.10
612 613 7.040961 TCCGTTTCCGTTTTCATATTTTCTCTT 60.041 33.333 0.00 0.00 0.00 2.85
613 614 7.270579 CCGTTTCCGTTTTCATATTTTCTCTTC 59.729 37.037 0.00 0.00 0.00 2.87
614 615 7.801315 CGTTTCCGTTTTCATATTTTCTCTTCA 59.199 33.333 0.00 0.00 0.00 3.02
615 616 9.626045 GTTTCCGTTTTCATATTTTCTCTTCAT 57.374 29.630 0.00 0.00 0.00 2.57
618 619 9.840427 TCCGTTTTCATATTTTCTCTTCATTTC 57.160 29.630 0.00 0.00 0.00 2.17
619 620 9.076596 CCGTTTTCATATTTTCTCTTCATTTCC 57.923 33.333 0.00 0.00 0.00 3.13
620 621 9.624697 CGTTTTCATATTTTCTCTTCATTTCCA 57.375 29.630 0.00 0.00 0.00 3.53
629 630 9.716531 ATTTTCTCTTCATTTCCATTTTTCCTC 57.283 29.630 0.00 0.00 0.00 3.71
630 631 6.840780 TCTCTTCATTTCCATTTTTCCTCC 57.159 37.500 0.00 0.00 0.00 4.30
631 632 5.415701 TCTCTTCATTTCCATTTTTCCTCCG 59.584 40.000 0.00 0.00 0.00 4.63
632 633 4.462483 TCTTCATTTCCATTTTTCCTCCGG 59.538 41.667 0.00 0.00 0.00 5.14
633 634 4.040936 TCATTTCCATTTTTCCTCCGGA 57.959 40.909 2.93 2.93 0.00 5.14
634 635 4.411927 TCATTTCCATTTTTCCTCCGGAA 58.588 39.130 5.23 0.00 40.27 4.30
664 665 5.728637 AAGTTTCCACTCCATTTTCATCC 57.271 39.130 0.00 0.00 30.45 3.51
665 666 4.089361 AGTTTCCACTCCATTTTCATCCC 58.911 43.478 0.00 0.00 0.00 3.85
666 667 4.089361 GTTTCCACTCCATTTTCATCCCT 58.911 43.478 0.00 0.00 0.00 4.20
667 668 5.015178 AGTTTCCACTCCATTTTCATCCCTA 59.985 40.000 0.00 0.00 0.00 3.53
668 669 4.778213 TCCACTCCATTTTCATCCCTAG 57.222 45.455 0.00 0.00 0.00 3.02
669 670 3.117888 TCCACTCCATTTTCATCCCTAGC 60.118 47.826 0.00 0.00 0.00 3.42
670 671 2.874701 CACTCCATTTTCATCCCTAGCG 59.125 50.000 0.00 0.00 0.00 4.26
671 672 1.876156 CTCCATTTTCATCCCTAGCGC 59.124 52.381 0.00 0.00 0.00 5.92
672 673 0.954452 CCATTTTCATCCCTAGCGCC 59.046 55.000 2.29 0.00 0.00 6.53
673 674 1.477558 CCATTTTCATCCCTAGCGCCT 60.478 52.381 2.29 0.00 0.00 5.52
674 675 2.224523 CCATTTTCATCCCTAGCGCCTA 60.225 50.000 2.29 0.00 0.00 3.93
675 676 2.910688 TTTTCATCCCTAGCGCCTAG 57.089 50.000 2.29 5.30 34.16 3.02
676 677 1.789523 TTTCATCCCTAGCGCCTAGT 58.210 50.000 2.29 0.00 32.62 2.57
677 678 2.670019 TTCATCCCTAGCGCCTAGTA 57.330 50.000 2.29 0.00 32.62 1.82
678 679 2.670019 TCATCCCTAGCGCCTAGTAA 57.330 50.000 2.29 0.00 32.62 2.24
679 680 2.236766 TCATCCCTAGCGCCTAGTAAC 58.763 52.381 2.29 0.00 32.62 2.50
680 681 1.068472 CATCCCTAGCGCCTAGTAACG 60.068 57.143 2.29 0.00 32.62 3.18
686 687 4.724022 CGCCTAGTAACGCGGAAT 57.276 55.556 12.47 0.00 44.57 3.01
687 688 3.851620 CGCCTAGTAACGCGGAATA 57.148 52.632 12.47 0.01 44.57 1.75
688 689 1.402511 CGCCTAGTAACGCGGAATAC 58.597 55.000 12.47 10.90 44.57 1.89
689 690 1.268692 CGCCTAGTAACGCGGAATACA 60.269 52.381 12.47 1.74 44.57 2.29
690 691 2.795681 CGCCTAGTAACGCGGAATACAA 60.796 50.000 12.47 0.00 44.57 2.41
691 692 3.189285 GCCTAGTAACGCGGAATACAAA 58.811 45.455 12.47 2.91 0.00 2.83
692 693 3.618150 GCCTAGTAACGCGGAATACAAAA 59.382 43.478 12.47 0.58 0.00 2.44
693 694 4.271776 GCCTAGTAACGCGGAATACAAAAT 59.728 41.667 12.47 0.00 0.00 1.82
694 695 5.220719 GCCTAGTAACGCGGAATACAAAATT 60.221 40.000 12.47 0.00 0.00 1.82
695 696 6.676213 GCCTAGTAACGCGGAATACAAAATTT 60.676 38.462 12.47 0.00 0.00 1.82
725 726 2.673523 CTTCCACTCCCCAGCAGG 59.326 66.667 0.00 0.00 0.00 4.85
830 839 1.000717 GCACCAAATAAACCACAGCGT 60.001 47.619 0.00 0.00 0.00 5.07
831 840 2.544903 GCACCAAATAAACCACAGCGTT 60.545 45.455 0.00 0.00 0.00 4.84
832 841 3.049206 CACCAAATAAACCACAGCGTTG 58.951 45.455 0.00 0.00 0.00 4.10
833 842 2.058057 CCAAATAAACCACAGCGTTGC 58.942 47.619 0.00 0.00 0.00 4.17
834 843 2.058057 CAAATAAACCACAGCGTTGCC 58.942 47.619 0.00 0.00 0.00 4.52
835 844 1.616159 AATAAACCACAGCGTTGCCT 58.384 45.000 0.00 0.00 0.00 4.75
836 845 2.483014 ATAAACCACAGCGTTGCCTA 57.517 45.000 0.00 0.00 0.00 3.93
837 846 2.257691 TAAACCACAGCGTTGCCTAA 57.742 45.000 0.00 0.00 0.00 2.69
838 847 1.394618 AAACCACAGCGTTGCCTAAA 58.605 45.000 0.00 0.00 0.00 1.85
839 848 1.394618 AACCACAGCGTTGCCTAAAA 58.605 45.000 0.00 0.00 0.00 1.52
840 849 1.394618 ACCACAGCGTTGCCTAAAAA 58.605 45.000 0.00 0.00 0.00 1.94
863 872 5.508200 AAAACAAATAAACCACAGCGAGA 57.492 34.783 0.00 0.00 0.00 4.04
864 873 5.705609 AAACAAATAAACCACAGCGAGAT 57.294 34.783 0.00 0.00 0.00 2.75
909 920 2.679642 CCCCCGCTTGCATTCCAA 60.680 61.111 0.00 0.00 0.00 3.53
914 925 1.067000 CCCGCTTGCATTCCAATTTCA 60.067 47.619 0.00 0.00 31.91 2.69
918 929 4.377635 CCGCTTGCATTCCAATTTCAAAAG 60.378 41.667 0.00 0.00 31.91 2.27
919 930 4.448395 CGCTTGCATTCCAATTTCAAAAGA 59.552 37.500 0.00 0.00 31.91 2.52
975 989 4.357279 AAGCCTCCCTGCCACTGC 62.357 66.667 0.00 0.00 38.26 4.40
1559 1653 8.764287 GCTGCAGACAATTAAGTGTAAAATTTT 58.236 29.630 20.43 8.75 0.00 1.82
1561 1655 9.255304 TGCAGACAATTAAGTGTAAAATTTTCC 57.745 29.630 8.79 0.00 0.00 3.13
1562 1656 9.476202 GCAGACAATTAAGTGTAAAATTTTCCT 57.524 29.630 8.79 0.00 0.00 3.36
1571 1665 6.805713 AGTGTAAAATTTTCCTCCTTGTGTG 58.194 36.000 6.72 0.00 0.00 3.82
1572 1666 5.983118 GTGTAAAATTTTCCTCCTTGTGTGG 59.017 40.000 6.72 0.00 0.00 4.17
1584 2806 3.644265 TCCTTGTGTGGACTAGCAGTTAA 59.356 43.478 0.00 0.00 0.00 2.01
1587 2809 5.122396 CCTTGTGTGGACTAGCAGTTAATTC 59.878 44.000 0.00 0.00 0.00 2.17
1599 2821 4.661993 CAGTTAATTCGCTGCTGTACAA 57.338 40.909 0.00 0.00 0.00 2.41
2465 5463 9.198837 GACTAAAAGAAGTTTGACTTAGGAGAG 57.801 37.037 0.00 0.00 38.80 3.20
3315 7433 1.946768 TGCTGTTTCCTTTGACTTCCG 59.053 47.619 0.00 0.00 0.00 4.30
4024 9436 5.654497 CATATCAGATACGAAGCTATGGCA 58.346 41.667 3.10 0.00 41.70 4.92
4386 9818 7.141363 GCCATTATGATGTATTTCTGTTGGAC 58.859 38.462 0.00 0.00 0.00 4.02
4794 10473 5.552870 TTAGATCCTGGAAACATAGAGGC 57.447 43.478 0.00 0.00 41.51 4.70
4841 10520 7.448748 ACTGTCTTGTACTTGTTTCTTTTGT 57.551 32.000 0.00 0.00 0.00 2.83
5259 10997 1.818642 AGCTGGAGTGCTGAAATGTC 58.181 50.000 0.00 0.00 42.33 3.06
5348 11093 9.927668 AACGATGTTTCCTTATGAATTTTGAAT 57.072 25.926 0.00 0.00 31.67 2.57
5375 11120 5.705905 AGTACCTTCCAAGTTTTCATACTGC 59.294 40.000 0.00 0.00 0.00 4.40
5436 11186 5.553123 TCATTTGCATCTTCCAGCATTTTT 58.447 33.333 0.00 0.00 40.94 1.94
5617 11367 8.585471 AATTGTACATCTCAAGATCAATTGGT 57.415 30.769 5.42 0.00 36.24 3.67
5964 11839 4.627035 GCTTCCTTGTTCATGTAAAATGGC 59.373 41.667 0.00 0.00 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 9.916360 ACTAGACGGGGAAAATTTATTTTATCT 57.084 29.630 0.00 0.00 39.86 1.98
5 6 9.743581 TCTAACTAGACGGGGAAAATTTATTTT 57.256 29.630 0.00 0.27 42.24 1.82
6 7 9.743581 TTCTAACTAGACGGGGAAAATTTATTT 57.256 29.630 0.00 0.00 30.81 1.40
7 8 9.743581 TTTCTAACTAGACGGGGAAAATTTATT 57.256 29.630 0.00 0.00 30.81 1.40
8 9 9.743581 TTTTCTAACTAGACGGGGAAAATTTAT 57.256 29.630 0.00 0.00 30.91 1.40
9 10 9.743581 ATTTTCTAACTAGACGGGGAAAATTTA 57.256 29.630 0.00 0.00 39.04 1.40
10 11 8.645814 ATTTTCTAACTAGACGGGGAAAATTT 57.354 30.769 0.00 0.00 39.04 1.82
11 12 8.107729 AGATTTTCTAACTAGACGGGGAAAATT 58.892 33.333 17.72 10.99 40.83 1.82
12 13 7.631007 AGATTTTCTAACTAGACGGGGAAAAT 58.369 34.615 17.20 17.20 42.31 1.82
13 14 7.012661 AGATTTTCTAACTAGACGGGGAAAA 57.987 36.000 0.00 6.54 37.18 2.29
14 15 6.616237 AGATTTTCTAACTAGACGGGGAAA 57.384 37.500 0.00 0.00 30.81 3.13
15 16 7.121382 TCTAGATTTTCTAACTAGACGGGGAA 58.879 38.462 0.00 0.00 38.02 3.97
16 17 6.666678 TCTAGATTTTCTAACTAGACGGGGA 58.333 40.000 0.00 0.00 38.02 4.81
17 18 6.956202 TCTAGATTTTCTAACTAGACGGGG 57.044 41.667 0.00 0.00 38.02 5.73
26 27 9.886132 TGTTCACCCTATTCTAGATTTTCTAAC 57.114 33.333 0.00 0.00 0.00 2.34
29 30 9.981460 AAATGTTCACCCTATTCTAGATTTTCT 57.019 29.630 0.00 0.00 0.00 2.52
77 78 9.433153 TGCATTAGAAATATTGCATGTTTTCAA 57.567 25.926 14.44 9.13 39.98 2.69
78 79 8.999220 TGCATTAGAAATATTGCATGTTTTCA 57.001 26.923 14.44 0.85 39.98 2.69
111 112 9.658799 TGGATTTTATTCGGATTTTATTTGCAA 57.341 25.926 0.00 0.00 0.00 4.08
112 113 9.658799 TTGGATTTTATTCGGATTTTATTTGCA 57.341 25.926 0.00 0.00 0.00 4.08
155 156 9.581289 TCCAAAACAATTGAAATACTAGAGGAA 57.419 29.630 13.59 0.00 0.00 3.36
156 157 9.231297 CTCCAAAACAATTGAAATACTAGAGGA 57.769 33.333 13.59 4.59 0.00 3.71
157 158 9.231297 TCTCCAAAACAATTGAAATACTAGAGG 57.769 33.333 13.59 0.50 0.00 3.69
162 163 8.912988 TGACTTCTCCAAAACAATTGAAATACT 58.087 29.630 13.59 0.00 0.00 2.12
163 164 9.696917 ATGACTTCTCCAAAACAATTGAAATAC 57.303 29.630 13.59 0.00 0.00 1.89
180 181 9.612066 AAATGAGAGGAGAAAATATGACTTCTC 57.388 33.333 11.45 11.45 44.53 2.87
248 249 9.855021 CAAATAATAAGACGAGGATTTTGGTTT 57.145 29.630 0.00 0.00 0.00 3.27
249 250 9.238368 TCAAATAATAAGACGAGGATTTTGGTT 57.762 29.630 0.00 0.00 0.00 3.67
250 251 8.801882 TCAAATAATAAGACGAGGATTTTGGT 57.198 30.769 0.00 0.00 0.00 3.67
251 252 9.669353 CATCAAATAATAAGACGAGGATTTTGG 57.331 33.333 0.00 0.00 0.00 3.28
282 283 9.801873 GGGATTTTCTCGAATTTTCATATTTGA 57.198 29.630 0.00 0.00 0.00 2.69
283 284 9.034544 GGGGATTTTCTCGAATTTTCATATTTG 57.965 33.333 0.00 0.00 0.00 2.32
284 285 8.757877 TGGGGATTTTCTCGAATTTTCATATTT 58.242 29.630 0.00 0.00 0.00 1.40
285 286 8.305046 TGGGGATTTTCTCGAATTTTCATATT 57.695 30.769 0.00 0.00 0.00 1.28
286 287 7.896383 TGGGGATTTTCTCGAATTTTCATAT 57.104 32.000 0.00 0.00 0.00 1.78
287 288 7.396055 AGTTGGGGATTTTCTCGAATTTTCATA 59.604 33.333 0.00 0.00 0.00 2.15
288 289 6.211384 AGTTGGGGATTTTCTCGAATTTTCAT 59.789 34.615 0.00 0.00 0.00 2.57
289 290 5.538433 AGTTGGGGATTTTCTCGAATTTTCA 59.462 36.000 0.00 0.00 0.00 2.69
290 291 6.025749 AGTTGGGGATTTTCTCGAATTTTC 57.974 37.500 0.00 0.00 0.00 2.29
291 292 5.775195 AGAGTTGGGGATTTTCTCGAATTTT 59.225 36.000 0.00 0.00 0.00 1.82
292 293 5.325239 AGAGTTGGGGATTTTCTCGAATTT 58.675 37.500 0.00 0.00 0.00 1.82
293 294 4.923415 AGAGTTGGGGATTTTCTCGAATT 58.077 39.130 0.00 0.00 0.00 2.17
294 295 4.226168 AGAGAGTTGGGGATTTTCTCGAAT 59.774 41.667 0.00 0.00 39.33 3.34
295 296 3.583086 AGAGAGTTGGGGATTTTCTCGAA 59.417 43.478 0.00 0.00 39.33 3.71
296 297 3.173965 AGAGAGTTGGGGATTTTCTCGA 58.826 45.455 0.00 0.00 39.33 4.04
297 298 3.526534 GAGAGAGTTGGGGATTTTCTCG 58.473 50.000 0.00 0.00 39.33 4.04
298 299 3.680196 CGGAGAGAGTTGGGGATTTTCTC 60.680 52.174 0.00 0.00 35.62 2.87
299 300 2.237392 CGGAGAGAGTTGGGGATTTTCT 59.763 50.000 0.00 0.00 0.00 2.52
300 301 2.236395 TCGGAGAGAGTTGGGGATTTTC 59.764 50.000 0.00 0.00 0.00 2.29
301 302 2.266279 TCGGAGAGAGTTGGGGATTTT 58.734 47.619 0.00 0.00 0.00 1.82
302 303 1.952621 TCGGAGAGAGTTGGGGATTT 58.047 50.000 0.00 0.00 0.00 2.17
303 304 3.711849 TCGGAGAGAGTTGGGGATT 57.288 52.632 0.00 0.00 0.00 3.01
315 316 0.114560 AACTCAAGGACCCTCGGAGA 59.885 55.000 18.66 3.61 33.98 3.71
316 317 0.247736 CAACTCAAGGACCCTCGGAG 59.752 60.000 13.11 13.11 35.13 4.63
317 318 1.827399 GCAACTCAAGGACCCTCGGA 61.827 60.000 0.00 0.00 0.00 4.55
318 319 1.376037 GCAACTCAAGGACCCTCGG 60.376 63.158 0.00 0.00 0.00 4.63
319 320 0.035458 AAGCAACTCAAGGACCCTCG 59.965 55.000 0.00 0.00 0.00 4.63
320 321 2.355209 CCTAAGCAACTCAAGGACCCTC 60.355 54.545 0.00 0.00 0.00 4.30
321 322 1.630878 CCTAAGCAACTCAAGGACCCT 59.369 52.381 0.00 0.00 0.00 4.34
322 323 1.628846 TCCTAAGCAACTCAAGGACCC 59.371 52.381 0.00 0.00 33.18 4.46
323 324 3.636153 ATCCTAAGCAACTCAAGGACC 57.364 47.619 0.00 0.00 40.83 4.46
324 325 6.018669 CGATAAATCCTAAGCAACTCAAGGAC 60.019 42.308 0.00 0.00 40.83 3.85
325 326 6.049149 CGATAAATCCTAAGCAACTCAAGGA 58.951 40.000 0.00 0.00 42.17 3.36
326 327 6.049149 TCGATAAATCCTAAGCAACTCAAGG 58.951 40.000 0.00 0.00 0.00 3.61
327 328 6.201806 CCTCGATAAATCCTAAGCAACTCAAG 59.798 42.308 0.00 0.00 0.00 3.02
328 329 6.049149 CCTCGATAAATCCTAAGCAACTCAA 58.951 40.000 0.00 0.00 0.00 3.02
329 330 5.362717 TCCTCGATAAATCCTAAGCAACTCA 59.637 40.000 0.00 0.00 0.00 3.41
330 331 5.844004 TCCTCGATAAATCCTAAGCAACTC 58.156 41.667 0.00 0.00 0.00 3.01
331 332 5.871396 TCCTCGATAAATCCTAAGCAACT 57.129 39.130 0.00 0.00 0.00 3.16
332 333 7.012421 ACAAATCCTCGATAAATCCTAAGCAAC 59.988 37.037 0.00 0.00 0.00 4.17
333 334 7.054124 ACAAATCCTCGATAAATCCTAAGCAA 58.946 34.615 0.00 0.00 0.00 3.91
334 335 6.591935 ACAAATCCTCGATAAATCCTAAGCA 58.408 36.000 0.00 0.00 0.00 3.91
335 336 6.706270 TGACAAATCCTCGATAAATCCTAAGC 59.294 38.462 0.00 0.00 0.00 3.09
336 337 8.662781 TTGACAAATCCTCGATAAATCCTAAG 57.337 34.615 0.00 0.00 0.00 2.18
337 338 9.456147 TTTTGACAAATCCTCGATAAATCCTAA 57.544 29.630 0.50 0.00 0.00 2.69
338 339 9.627123 ATTTTGACAAATCCTCGATAAATCCTA 57.373 29.630 0.50 0.00 0.00 2.94
339 340 7.938140 TTTTGACAAATCCTCGATAAATCCT 57.062 32.000 0.50 0.00 0.00 3.24
340 341 7.168135 GCATTTTGACAAATCCTCGATAAATCC 59.832 37.037 0.50 0.00 29.41 3.01
341 342 7.701924 TGCATTTTGACAAATCCTCGATAAATC 59.298 33.333 0.50 0.00 29.41 2.17
342 343 7.546358 TGCATTTTGACAAATCCTCGATAAAT 58.454 30.769 0.50 0.00 29.41 1.40
343 344 6.918626 TGCATTTTGACAAATCCTCGATAAA 58.081 32.000 0.50 0.00 29.41 1.40
344 345 6.507958 TGCATTTTGACAAATCCTCGATAA 57.492 33.333 0.50 0.00 29.41 1.75
345 346 6.507958 TTGCATTTTGACAAATCCTCGATA 57.492 33.333 0.50 0.00 29.41 2.92
346 347 5.389859 TTGCATTTTGACAAATCCTCGAT 57.610 34.783 0.50 0.00 29.41 3.59
347 348 4.844998 TTGCATTTTGACAAATCCTCGA 57.155 36.364 0.50 0.00 29.41 4.04
348 349 7.579589 TTTATTGCATTTTGACAAATCCTCG 57.420 32.000 0.50 0.00 29.41 4.63
411 412 8.567104 GCTTTTGTAACATCCCAAATTTTCAAT 58.433 29.630 0.00 0.00 31.20 2.57
412 413 7.554118 TGCTTTTGTAACATCCCAAATTTTCAA 59.446 29.630 0.00 0.00 31.20 2.69
413 414 7.050377 TGCTTTTGTAACATCCCAAATTTTCA 58.950 30.769 0.00 0.00 31.20 2.69
414 415 7.489574 TGCTTTTGTAACATCCCAAATTTTC 57.510 32.000 0.00 0.00 31.20 2.29
415 416 6.017192 GCTGCTTTTGTAACATCCCAAATTTT 60.017 34.615 0.00 0.00 31.20 1.82
416 417 5.469760 GCTGCTTTTGTAACATCCCAAATTT 59.530 36.000 0.00 0.00 31.20 1.82
417 418 4.996758 GCTGCTTTTGTAACATCCCAAATT 59.003 37.500 0.00 0.00 31.20 1.82
418 419 4.284234 AGCTGCTTTTGTAACATCCCAAAT 59.716 37.500 0.00 0.00 31.20 2.32
419 420 3.640967 AGCTGCTTTTGTAACATCCCAAA 59.359 39.130 0.00 0.00 0.00 3.28
420 421 3.230134 AGCTGCTTTTGTAACATCCCAA 58.770 40.909 0.00 0.00 0.00 4.12
421 422 2.875296 AGCTGCTTTTGTAACATCCCA 58.125 42.857 0.00 0.00 0.00 4.37
422 423 5.239525 CCTATAGCTGCTTTTGTAACATCCC 59.760 44.000 7.79 0.00 0.00 3.85
423 424 5.823045 ACCTATAGCTGCTTTTGTAACATCC 59.177 40.000 7.79 0.00 0.00 3.51
424 425 6.763610 AGACCTATAGCTGCTTTTGTAACATC 59.236 38.462 7.79 0.00 0.00 3.06
425 426 6.653989 AGACCTATAGCTGCTTTTGTAACAT 58.346 36.000 7.79 0.00 0.00 2.71
426 427 6.049955 AGACCTATAGCTGCTTTTGTAACA 57.950 37.500 7.79 0.00 0.00 2.41
427 428 9.413048 CTATAGACCTATAGCTGCTTTTGTAAC 57.587 37.037 7.79 0.00 38.74 2.50
428 429 9.144298 ACTATAGACCTATAGCTGCTTTTGTAA 57.856 33.333 18.93 0.00 45.48 2.41
429 430 8.707796 ACTATAGACCTATAGCTGCTTTTGTA 57.292 34.615 18.93 0.00 45.48 2.41
430 431 7.604657 ACTATAGACCTATAGCTGCTTTTGT 57.395 36.000 18.93 0.92 45.48 2.83
431 432 9.982651 TTTACTATAGACCTATAGCTGCTTTTG 57.017 33.333 18.93 0.44 45.48 2.44
434 435 9.984190 GTTTTTACTATAGACCTATAGCTGCTT 57.016 33.333 18.93 0.00 45.48 3.91
435 436 9.144298 TGTTTTTACTATAGACCTATAGCTGCT 57.856 33.333 18.93 7.57 45.48 4.24
436 437 9.413048 CTGTTTTTACTATAGACCTATAGCTGC 57.587 37.037 18.93 0.00 45.48 5.25
452 453 9.840427 CGTGAATATGGAATTTCTGTTTTTACT 57.160 29.630 0.00 0.00 0.00 2.24
453 454 9.072294 CCGTGAATATGGAATTTCTGTTTTTAC 57.928 33.333 0.00 0.00 34.72 2.01
454 455 9.015367 TCCGTGAATATGGAATTTCTGTTTTTA 57.985 29.630 0.00 0.00 39.05 1.52
455 456 7.891561 TCCGTGAATATGGAATTTCTGTTTTT 58.108 30.769 0.00 0.00 39.05 1.94
456 457 7.461182 TCCGTGAATATGGAATTTCTGTTTT 57.539 32.000 0.00 0.00 39.05 2.43
457 458 7.461182 TTCCGTGAATATGGAATTTCTGTTT 57.539 32.000 0.00 0.00 44.99 2.83
467 468 4.938832 ACATTTCGTTTCCGTGAATATGGA 59.061 37.500 0.00 0.00 40.26 3.41
468 469 5.229921 ACATTTCGTTTCCGTGAATATGG 57.770 39.130 0.00 0.00 35.01 2.74
469 470 5.737290 GGAACATTTCGTTTCCGTGAATATG 59.263 40.000 0.00 0.00 38.19 1.78
470 471 5.413213 TGGAACATTTCGTTTCCGTGAATAT 59.587 36.000 0.00 0.00 38.19 1.28
471 472 4.755629 TGGAACATTTCGTTTCCGTGAATA 59.244 37.500 0.00 0.00 38.19 1.75
472 473 3.566322 TGGAACATTTCGTTTCCGTGAAT 59.434 39.130 0.00 0.00 38.19 2.57
473 474 2.943690 TGGAACATTTCGTTTCCGTGAA 59.056 40.909 0.00 0.00 38.19 3.18
474 475 2.562635 TGGAACATTTCGTTTCCGTGA 58.437 42.857 0.00 0.00 38.19 4.35
475 476 8.867115 TGGAAATGGAACATTTCGTTTCCGTG 62.867 42.308 23.05 0.00 46.72 4.94
476 477 6.950308 TGGAAATGGAACATTTCGTTTCCGT 61.950 40.000 23.05 2.63 46.72 4.69
477 478 4.557695 TGGAAATGGAACATTTCGTTTCCG 60.558 41.667 23.05 0.00 46.72 4.30
487 488 8.744465 GTGGAACATGCATGGAAATGGAACAT 62.744 42.308 29.41 1.84 43.94 2.71
488 489 7.529516 GTGGAACATGCATGGAAATGGAACA 62.530 44.000 29.41 12.21 44.52 3.18
489 490 3.055963 TGGAACATGCATGGAAATGGAAC 60.056 43.478 29.41 10.01 0.00 3.62
490 491 3.055963 GTGGAACATGCATGGAAATGGAA 60.056 43.478 29.41 5.03 44.52 3.53
491 492 2.496871 GTGGAACATGCATGGAAATGGA 59.503 45.455 29.41 4.92 44.52 3.41
492 493 2.419021 GGTGGAACATGCATGGAAATGG 60.419 50.000 29.41 3.95 44.52 3.16
493 494 2.736081 CGGTGGAACATGCATGGAAATG 60.736 50.000 29.41 6.40 44.52 2.32
494 495 1.477700 CGGTGGAACATGCATGGAAAT 59.522 47.619 29.41 13.24 44.52 2.17
495 496 0.887247 CGGTGGAACATGCATGGAAA 59.113 50.000 29.41 10.25 44.52 3.13
496 497 0.964860 CCGGTGGAACATGCATGGAA 60.965 55.000 29.41 9.90 44.52 3.53
497 498 1.378382 CCGGTGGAACATGCATGGA 60.378 57.895 29.41 8.60 44.52 3.41
498 499 0.964860 TTCCGGTGGAACATGCATGG 60.965 55.000 29.41 10.23 44.52 3.66
499 500 0.887247 TTTCCGGTGGAACATGCATG 59.113 50.000 25.09 25.09 41.87 4.06
500 501 1.272212 GTTTTCCGGTGGAACATGCAT 59.728 47.619 0.00 0.00 41.87 3.96
501 502 0.671251 GTTTTCCGGTGGAACATGCA 59.329 50.000 0.00 0.00 41.87 3.96
502 503 0.671251 TGTTTTCCGGTGGAACATGC 59.329 50.000 0.00 0.00 41.87 4.06
503 504 1.000717 GGTGTTTTCCGGTGGAACATG 60.001 52.381 18.02 0.00 41.87 3.21
504 505 1.324383 GGTGTTTTCCGGTGGAACAT 58.676 50.000 18.02 0.00 41.87 2.71
505 506 1.096386 CGGTGTTTTCCGGTGGAACA 61.096 55.000 0.00 8.59 41.87 3.18
506 507 1.650363 CGGTGTTTTCCGGTGGAAC 59.350 57.895 0.00 5.88 41.87 3.62
507 508 4.144418 CGGTGTTTTCCGGTGGAA 57.856 55.556 0.00 0.00 45.88 3.53
524 525 3.304026 GGAAACGGAAACAAAAACGGAAC 59.696 43.478 0.00 0.00 0.00 3.62
525 526 3.509740 GGAAACGGAAACAAAAACGGAA 58.490 40.909 0.00 0.00 0.00 4.30
526 527 3.148026 GGAAACGGAAACAAAAACGGA 57.852 42.857 0.00 0.00 0.00 4.69
553 554 5.545063 ACGGAAGTGGAAATGGAATTTTT 57.455 34.783 0.00 0.00 46.07 1.94
554 555 5.545063 AACGGAAGTGGAAATGGAATTTT 57.455 34.783 0.00 0.00 46.85 1.82
569 570 3.120041 ACGGAAATTTGCAAAACGGAAG 58.880 40.909 17.19 8.89 0.00 3.46
570 571 3.166489 ACGGAAATTTGCAAAACGGAA 57.834 38.095 17.19 0.00 0.00 4.30
571 572 2.873133 ACGGAAATTTGCAAAACGGA 57.127 40.000 17.19 0.00 0.00 4.69
572 573 3.302805 GGAAACGGAAATTTGCAAAACGG 60.303 43.478 17.19 15.72 30.81 4.44
573 574 3.856037 GGAAACGGAAATTTGCAAAACG 58.144 40.909 17.19 18.98 30.81 3.60
589 590 9.626045 ATGAAGAGAAAATATGAAAACGGAAAC 57.374 29.630 0.00 0.00 0.00 2.78
592 593 9.840427 GAAATGAAGAGAAAATATGAAAACGGA 57.160 29.630 0.00 0.00 0.00 4.69
593 594 9.076596 GGAAATGAAGAGAAAATATGAAAACGG 57.923 33.333 0.00 0.00 0.00 4.44
594 595 9.624697 TGGAAATGAAGAGAAAATATGAAAACG 57.375 29.630 0.00 0.00 0.00 3.60
603 604 9.716531 GAGGAAAAATGGAAATGAAGAGAAAAT 57.283 29.630 0.00 0.00 0.00 1.82
604 605 8.150296 GGAGGAAAAATGGAAATGAAGAGAAAA 58.850 33.333 0.00 0.00 0.00 2.29
605 606 7.523709 CGGAGGAAAAATGGAAATGAAGAGAAA 60.524 37.037 0.00 0.00 0.00 2.52
606 607 6.071952 CGGAGGAAAAATGGAAATGAAGAGAA 60.072 38.462 0.00 0.00 0.00 2.87
607 608 5.415701 CGGAGGAAAAATGGAAATGAAGAGA 59.584 40.000 0.00 0.00 0.00 3.10
608 609 5.644644 CGGAGGAAAAATGGAAATGAAGAG 58.355 41.667 0.00 0.00 0.00 2.85
609 610 5.643379 CGGAGGAAAAATGGAAATGAAGA 57.357 39.130 0.00 0.00 0.00 2.87
629 630 2.734670 GGAAACTTTCCGTTTTTCCGG 58.265 47.619 4.75 0.00 45.48 5.14
640 641 6.159293 GGATGAAAATGGAGTGGAAACTTTC 58.841 40.000 0.00 0.00 0.00 2.62
641 642 5.012046 GGGATGAAAATGGAGTGGAAACTTT 59.988 40.000 0.00 0.00 0.00 2.66
642 643 4.528206 GGGATGAAAATGGAGTGGAAACTT 59.472 41.667 0.00 0.00 0.00 2.66
643 644 4.089361 GGGATGAAAATGGAGTGGAAACT 58.911 43.478 0.00 0.00 0.00 2.66
644 645 4.089361 AGGGATGAAAATGGAGTGGAAAC 58.911 43.478 0.00 0.00 0.00 2.78
645 646 4.402616 AGGGATGAAAATGGAGTGGAAA 57.597 40.909 0.00 0.00 0.00 3.13
646 647 4.628715 GCTAGGGATGAAAATGGAGTGGAA 60.629 45.833 0.00 0.00 0.00 3.53
647 648 3.117888 GCTAGGGATGAAAATGGAGTGGA 60.118 47.826 0.00 0.00 0.00 4.02
648 649 3.217626 GCTAGGGATGAAAATGGAGTGG 58.782 50.000 0.00 0.00 0.00 4.00
649 650 2.874701 CGCTAGGGATGAAAATGGAGTG 59.125 50.000 0.00 0.00 0.00 3.51
650 651 2.746472 GCGCTAGGGATGAAAATGGAGT 60.746 50.000 11.61 0.00 0.00 3.85
651 652 1.876156 GCGCTAGGGATGAAAATGGAG 59.124 52.381 11.61 0.00 0.00 3.86
652 653 1.476833 GGCGCTAGGGATGAAAATGGA 60.477 52.381 11.61 0.00 0.00 3.41
653 654 0.954452 GGCGCTAGGGATGAAAATGG 59.046 55.000 11.61 0.00 0.00 3.16
654 655 1.972872 AGGCGCTAGGGATGAAAATG 58.027 50.000 11.61 0.00 0.00 2.32
655 656 2.706190 ACTAGGCGCTAGGGATGAAAAT 59.294 45.455 11.61 0.00 38.30 1.82
656 657 2.116238 ACTAGGCGCTAGGGATGAAAA 58.884 47.619 11.61 0.00 38.30 2.29
657 658 1.789523 ACTAGGCGCTAGGGATGAAA 58.210 50.000 11.61 0.00 38.30 2.69
658 659 2.626743 GTTACTAGGCGCTAGGGATGAA 59.373 50.000 11.61 0.00 38.30 2.57
659 660 2.236766 GTTACTAGGCGCTAGGGATGA 58.763 52.381 11.61 0.00 38.30 2.92
660 661 1.068472 CGTTACTAGGCGCTAGGGATG 60.068 57.143 11.61 2.67 38.30 3.51
661 662 1.245732 CGTTACTAGGCGCTAGGGAT 58.754 55.000 11.61 0.44 38.30 3.85
662 663 2.711711 CGTTACTAGGCGCTAGGGA 58.288 57.895 11.61 0.00 38.30 4.20
670 671 2.497107 TGTATTCCGCGTTACTAGGC 57.503 50.000 4.92 0.00 0.00 3.93
671 672 5.978934 ATTTTGTATTCCGCGTTACTAGG 57.021 39.130 4.92 0.00 0.00 3.02
672 673 9.925268 AATAAATTTTGTATTCCGCGTTACTAG 57.075 29.630 4.92 0.00 0.00 2.57
673 674 9.919348 GAATAAATTTTGTATTCCGCGTTACTA 57.081 29.630 4.92 0.00 33.59 1.82
674 675 7.911727 GGAATAAATTTTGTATTCCGCGTTACT 59.088 33.333 13.07 0.00 44.29 2.24
675 676 8.042482 GGAATAAATTTTGTATTCCGCGTTAC 57.958 34.615 13.07 4.76 44.29 2.50
683 684 7.785028 AGGGAGAGGGGAATAAATTTTGTATTC 59.215 37.037 0.00 0.00 37.27 1.75
684 685 7.662083 AGGGAGAGGGGAATAAATTTTGTATT 58.338 34.615 0.00 0.00 0.00 1.89
685 686 7.239080 AGGGAGAGGGGAATAAATTTTGTAT 57.761 36.000 0.00 0.00 0.00 2.29
686 687 6.668133 AGGGAGAGGGGAATAAATTTTGTA 57.332 37.500 0.00 0.00 0.00 2.41
687 688 5.552430 AGGGAGAGGGGAATAAATTTTGT 57.448 39.130 0.00 0.00 0.00 2.83
688 689 5.363868 GGAAGGGAGAGGGGAATAAATTTTG 59.636 44.000 0.00 0.00 0.00 2.44
689 690 5.017323 TGGAAGGGAGAGGGGAATAAATTTT 59.983 40.000 0.00 0.00 0.00 1.82
690 691 4.548250 TGGAAGGGAGAGGGGAATAAATTT 59.452 41.667 0.00 0.00 0.00 1.82
691 692 4.079154 GTGGAAGGGAGAGGGGAATAAATT 60.079 45.833 0.00 0.00 0.00 1.82
692 693 3.463704 GTGGAAGGGAGAGGGGAATAAAT 59.536 47.826 0.00 0.00 0.00 1.40
693 694 2.850568 GTGGAAGGGAGAGGGGAATAAA 59.149 50.000 0.00 0.00 0.00 1.40
694 695 2.047296 AGTGGAAGGGAGAGGGGAATAA 59.953 50.000 0.00 0.00 0.00 1.40
695 696 1.657162 AGTGGAAGGGAGAGGGGAATA 59.343 52.381 0.00 0.00 0.00 1.75
840 849 5.897050 TCTCGCTGTGGTTTATTTGTTTTT 58.103 33.333 0.00 0.00 0.00 1.94
841 850 5.508200 TCTCGCTGTGGTTTATTTGTTTT 57.492 34.783 0.00 0.00 0.00 2.43
842 851 5.705609 ATCTCGCTGTGGTTTATTTGTTT 57.294 34.783 0.00 0.00 0.00 2.83
843 852 5.163754 GCTATCTCGCTGTGGTTTATTTGTT 60.164 40.000 0.00 0.00 0.00 2.83
844 853 4.332819 GCTATCTCGCTGTGGTTTATTTGT 59.667 41.667 0.00 0.00 0.00 2.83
845 854 4.550831 CGCTATCTCGCTGTGGTTTATTTG 60.551 45.833 0.00 0.00 0.00 2.32
846 855 3.555956 CGCTATCTCGCTGTGGTTTATTT 59.444 43.478 0.00 0.00 0.00 1.40
847 856 3.123804 CGCTATCTCGCTGTGGTTTATT 58.876 45.455 0.00 0.00 0.00 1.40
848 857 2.361119 TCGCTATCTCGCTGTGGTTTAT 59.639 45.455 0.00 0.00 0.00 1.40
849 858 1.746787 TCGCTATCTCGCTGTGGTTTA 59.253 47.619 0.00 0.00 0.00 2.01
850 859 0.530744 TCGCTATCTCGCTGTGGTTT 59.469 50.000 0.00 0.00 0.00 3.27
851 860 0.101399 CTCGCTATCTCGCTGTGGTT 59.899 55.000 0.00 0.00 0.00 3.67
852 861 1.729470 CCTCGCTATCTCGCTGTGGT 61.729 60.000 0.00 0.00 0.00 4.16
853 862 1.007964 CCTCGCTATCTCGCTGTGG 60.008 63.158 0.00 0.00 0.00 4.17
854 863 1.007964 CCCTCGCTATCTCGCTGTG 60.008 63.158 0.00 0.00 0.00 3.66
855 864 1.152943 TCCCTCGCTATCTCGCTGT 60.153 57.895 0.00 0.00 0.00 4.40
856 865 1.578926 CTCCCTCGCTATCTCGCTG 59.421 63.158 0.00 0.00 0.00 5.18
863 872 0.188587 TGGACATCCTCCCTCGCTAT 59.811 55.000 0.00 0.00 38.49 2.97
864 873 0.032515 TTGGACATCCTCCCTCGCTA 60.033 55.000 0.00 0.00 38.49 4.26
1056 1083 4.423209 AGGGGAGAGTGGGGGAGC 62.423 72.222 0.00 0.00 0.00 4.70
1063 1090 0.338120 AGGAAGAGGAGGGGAGAGTG 59.662 60.000 0.00 0.00 0.00 3.51
1064 1091 0.634465 GAGGAAGAGGAGGGGAGAGT 59.366 60.000 0.00 0.00 0.00 3.24
1559 1653 1.267121 GCTAGTCCACACAAGGAGGA 58.733 55.000 0.00 0.00 38.64 3.71
1560 1654 0.976641 TGCTAGTCCACACAAGGAGG 59.023 55.000 0.00 0.00 38.64 4.30
1561 1655 1.620819 ACTGCTAGTCCACACAAGGAG 59.379 52.381 0.00 0.00 38.64 3.69
1562 1656 1.717032 ACTGCTAGTCCACACAAGGA 58.283 50.000 0.00 0.00 34.64 3.36
1564 1658 5.163953 CGAATTAACTGCTAGTCCACACAAG 60.164 44.000 0.00 0.00 0.00 3.16
1566 1660 4.242475 CGAATTAACTGCTAGTCCACACA 58.758 43.478 0.00 0.00 0.00 3.72
1567 1661 3.062234 GCGAATTAACTGCTAGTCCACAC 59.938 47.826 0.00 0.00 0.00 3.82
1568 1662 3.056107 AGCGAATTAACTGCTAGTCCACA 60.056 43.478 0.00 0.00 37.15 4.17
1584 2806 3.251479 TCTGATTGTACAGCAGCGAAT 57.749 42.857 18.04 0.00 37.75 3.34
1587 2809 2.030091 CACATCTGATTGTACAGCAGCG 59.970 50.000 18.04 14.61 37.75 5.18
3315 7433 4.038402 CCAGTTTGGGATAGATGGAATTGC 59.962 45.833 0.00 0.00 32.67 3.56
4024 9436 9.783256 GAAACTTAACAACTCTGTTACACATTT 57.217 29.630 0.00 0.00 45.57 2.32
4794 10473 1.950828 TTACCGTAGCTCTCTCTCCG 58.049 55.000 0.00 0.00 0.00 4.63
4841 10520 9.875691 GTATGGAAGTACATATCATTCATGCTA 57.124 33.333 0.00 0.00 35.91 3.49
5259 10997 1.094785 CAAGTGGTAAAGCCCCATCG 58.905 55.000 0.00 0.00 33.76 3.84
5348 11093 7.876068 CAGTATGAAAACTTGGAAGGTACTGTA 59.124 37.037 0.00 0.00 37.03 2.74
5349 11094 6.710744 CAGTATGAAAACTTGGAAGGTACTGT 59.289 38.462 0.00 0.00 37.03 3.55
5350 11095 6.348540 GCAGTATGAAAACTTGGAAGGTACTG 60.349 42.308 0.00 0.00 37.03 2.74
5351 11096 5.705905 GCAGTATGAAAACTTGGAAGGTACT 59.294 40.000 0.00 0.00 39.17 2.73
5352 11097 5.472137 TGCAGTATGAAAACTTGGAAGGTAC 59.528 40.000 0.00 0.00 39.69 3.34
5436 11186 1.634973 TGAGAATGACTGAATGGCCCA 59.365 47.619 0.00 0.00 0.00 5.36
5617 11367 5.502079 AGTCACTAGCTGCTACTTCTCTAA 58.498 41.667 5.02 0.00 0.00 2.10
5964 11839 9.994432 AATTATGCTCAAACTCTAATTCTTTCG 57.006 29.630 0.00 0.00 0.00 3.46
6011 11886 3.818180 TGTAGATTAGGGTCTCGAGGAC 58.182 50.000 13.56 9.36 43.79 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.