Multiple sequence alignment - TraesCS4D01G096300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G096300 chr4D 100.000 2414 0 0 1 2414 72813214 72815627 0.000000e+00 4458
1 TraesCS4D01G096300 chr4D 92.821 1978 105 25 363 2324 61999531 62001487 0.000000e+00 2832
2 TraesCS4D01G096300 chr4D 91.194 829 43 10 3 805 235700561 235699737 0.000000e+00 1099
3 TraesCS4D01G096300 chr4D 91.525 590 38 10 43 623 373750790 373751376 0.000000e+00 802
4 TraesCS4D01G096300 chr3D 92.357 2355 136 30 3 2331 365091758 365094094 0.000000e+00 3312
5 TraesCS4D01G096300 chr3D 91.858 2358 149 26 5 2337 213251663 213254002 0.000000e+00 3251
6 TraesCS4D01G096300 chr3D 93.577 1806 83 17 562 2339 541034353 541032553 0.000000e+00 2662
7 TraesCS4D01G096300 chr3D 94.477 1720 81 10 632 2346 418259564 418257854 0.000000e+00 2638
8 TraesCS4D01G096300 chr7D 92.399 2355 120 18 5 2338 188532587 188534903 0.000000e+00 3302
9 TraesCS4D01G096300 chr2D 92.092 2352 121 17 3 2329 167550622 167548311 0.000000e+00 3253
10 TraesCS4D01G096300 chr2D 90.971 2359 110 39 13 2329 400571486 400569189 0.000000e+00 3081
11 TraesCS4D01G096300 chr2D 93.408 1790 80 16 562 2324 450556686 450554908 0.000000e+00 2617
12 TraesCS4D01G096300 chr2D 92.230 1493 84 13 6 1469 600490008 600488519 0.000000e+00 2085
13 TraesCS4D01G096300 chr2D 90.312 640 40 16 3 623 111114809 111115445 0.000000e+00 819
14 TraesCS4D01G096300 chr1D 91.087 2356 145 17 3 2331 349280124 349277807 0.000000e+00 3127
15 TraesCS4D01G096300 chr1D 89.620 684 38 18 6 675 216339744 216339080 0.000000e+00 839
16 TraesCS4D01G096300 chr6D 92.187 1843 96 18 3 1812 464756813 464758640 0.000000e+00 2562
17 TraesCS4D01G096300 chr4B 89.573 796 48 16 3 769 621690074 621689285 0.000000e+00 977
18 TraesCS4D01G096300 chr4B 96.429 84 3 0 2329 2412 105954705 105954788 3.240000e-29 139
19 TraesCS4D01G096300 chr6B 88.356 730 54 23 3 721 663371139 663371848 0.000000e+00 848


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G096300 chr4D 72813214 72815627 2413 False 4458 4458 100.000 1 2414 1 chr4D.!!$F2 2413
1 TraesCS4D01G096300 chr4D 61999531 62001487 1956 False 2832 2832 92.821 363 2324 1 chr4D.!!$F1 1961
2 TraesCS4D01G096300 chr4D 235699737 235700561 824 True 1099 1099 91.194 3 805 1 chr4D.!!$R1 802
3 TraesCS4D01G096300 chr4D 373750790 373751376 586 False 802 802 91.525 43 623 1 chr4D.!!$F3 580
4 TraesCS4D01G096300 chr3D 365091758 365094094 2336 False 3312 3312 92.357 3 2331 1 chr3D.!!$F2 2328
5 TraesCS4D01G096300 chr3D 213251663 213254002 2339 False 3251 3251 91.858 5 2337 1 chr3D.!!$F1 2332
6 TraesCS4D01G096300 chr3D 541032553 541034353 1800 True 2662 2662 93.577 562 2339 1 chr3D.!!$R2 1777
7 TraesCS4D01G096300 chr3D 418257854 418259564 1710 True 2638 2638 94.477 632 2346 1 chr3D.!!$R1 1714
8 TraesCS4D01G096300 chr7D 188532587 188534903 2316 False 3302 3302 92.399 5 2338 1 chr7D.!!$F1 2333
9 TraesCS4D01G096300 chr2D 167548311 167550622 2311 True 3253 3253 92.092 3 2329 1 chr2D.!!$R1 2326
10 TraesCS4D01G096300 chr2D 400569189 400571486 2297 True 3081 3081 90.971 13 2329 1 chr2D.!!$R2 2316
11 TraesCS4D01G096300 chr2D 450554908 450556686 1778 True 2617 2617 93.408 562 2324 1 chr2D.!!$R3 1762
12 TraesCS4D01G096300 chr2D 600488519 600490008 1489 True 2085 2085 92.230 6 1469 1 chr2D.!!$R4 1463
13 TraesCS4D01G096300 chr2D 111114809 111115445 636 False 819 819 90.312 3 623 1 chr2D.!!$F1 620
14 TraesCS4D01G096300 chr1D 349277807 349280124 2317 True 3127 3127 91.087 3 2331 1 chr1D.!!$R2 2328
15 TraesCS4D01G096300 chr1D 216339080 216339744 664 True 839 839 89.620 6 675 1 chr1D.!!$R1 669
16 TraesCS4D01G096300 chr6D 464756813 464758640 1827 False 2562 2562 92.187 3 1812 1 chr6D.!!$F1 1809
17 TraesCS4D01G096300 chr4B 621689285 621690074 789 True 977 977 89.573 3 769 1 chr4B.!!$R1 766
18 TraesCS4D01G096300 chr6B 663371139 663371848 709 False 848 848 88.356 3 721 1 chr6B.!!$F1 718

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
913 1163 0.338467 TAAGCCACCCTCTGCCTCTA 59.662 55.0 0.0 0.0 0.0 2.43 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1746 2015 0.178767 CATGCACTAGCTAGGTGGCA 59.821 55.0 27.79 27.79 42.74 4.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
102 116 9.211485 CCAAGTTTAGTATTTTTCCTCGTTAGA 57.789 33.333 0.00 0.00 0.00 2.10
117 132 8.937634 TCCTCGTTAGATTGTCTTATAAAACC 57.062 34.615 0.00 0.00 0.00 3.27
213 228 3.758425 GTTAACCAGCTCAAAACCCCTA 58.242 45.455 0.00 0.00 0.00 3.53
225 240 0.982326 AACCCCTATAAACCCCGCGA 60.982 55.000 8.23 0.00 0.00 5.87
259 274 0.543277 CTAGCTCCCAACATCAGCCA 59.457 55.000 0.00 0.00 33.28 4.75
295 312 1.377202 GCCAAGCGACATCCCTCAA 60.377 57.895 0.00 0.00 0.00 3.02
513 532 2.202298 GGCCGTTGAATTGCGTCG 60.202 61.111 0.00 0.00 0.00 5.12
589 666 4.557276 CATCGTTTGCTCTGATTTTTGC 57.443 40.909 0.00 0.00 0.00 3.68
590 667 3.706802 TCGTTTGCTCTGATTTTTGCA 57.293 38.095 0.00 0.00 0.00 4.08
591 668 4.241590 TCGTTTGCTCTGATTTTTGCAT 57.758 36.364 0.00 0.00 35.27 3.96
592 669 4.229096 TCGTTTGCTCTGATTTTTGCATC 58.771 39.130 0.00 0.00 35.27 3.91
593 670 3.058520 CGTTTGCTCTGATTTTTGCATCG 59.941 43.478 0.00 0.00 35.27 3.84
596 673 4.241590 TGCTCTGATTTTTGCATCGTTT 57.758 36.364 0.00 0.00 0.00 3.60
597 674 3.982701 TGCTCTGATTTTTGCATCGTTTG 59.017 39.130 0.00 0.00 0.00 2.93
757 1007 1.226101 CCACGCGTGCAATTAGCTG 60.226 57.895 33.17 12.69 45.94 4.24
871 1121 1.639280 CGTTATTGCCATGGCCAAAC 58.361 50.000 33.44 28.36 41.09 2.93
873 1123 2.620242 GTTATTGCCATGGCCAAACAG 58.380 47.619 33.44 0.00 41.09 3.16
913 1163 0.338467 TAAGCCACCCTCTGCCTCTA 59.662 55.000 0.00 0.00 0.00 2.43
996 1249 2.690497 TCCTTCTTCTAGCACATCCTCG 59.310 50.000 0.00 0.00 0.00 4.63
1078 1331 1.006571 CCTGGCGTGTACGTTGAGT 60.007 57.895 6.27 0.00 42.22 3.41
1101 1354 0.796312 CACTACGTGTGTGGGCAATC 59.204 55.000 13.48 0.00 41.53 2.67
1190 1443 1.846439 GGGATCTCCAAGGATGTTCCA 59.154 52.381 11.77 0.00 36.99 3.53
1235 1488 0.179018 GTGGTGGTTGCTCTCCTTGT 60.179 55.000 0.00 0.00 0.00 3.16
1259 1512 1.194547 CTTCACCAACACATTCGACGG 59.805 52.381 0.00 0.00 0.00 4.79
1272 1525 0.323178 TCGACGGCTTCTACCTCCTT 60.323 55.000 0.00 0.00 0.00 3.36
1556 1822 6.071051 GGATTGTTGGCCCTTTTATCAAGTTA 60.071 38.462 0.00 0.00 0.00 2.24
1616 1883 8.134202 TCTTCCTAGTTTCAACTATGTGATCA 57.866 34.615 0.00 0.00 40.46 2.92
1815 2084 1.082366 CGTAGCAAAACGGGTGCAC 60.082 57.895 8.80 8.80 44.74 4.57
1850 2119 1.609208 AAAGGCTGCAACTGATCGTT 58.391 45.000 0.50 0.00 35.88 3.85
1948 2217 2.887360 GGCTGGCGTGCATGAAAT 59.113 55.556 10.93 0.00 34.04 2.17
2130 2414 2.275380 GCCCAACGAAACCATGGCT 61.275 57.895 13.04 0.00 35.99 4.75
2135 2419 1.608590 CAACGAAACCATGGCTCAACT 59.391 47.619 13.04 0.00 0.00 3.16
2159 2444 0.777446 AACAGCTACACCCCCAACAT 59.223 50.000 0.00 0.00 0.00 2.71
2256 2541 0.900182 GGCAAGGGAGTGGGGAAAAG 60.900 60.000 0.00 0.00 0.00 2.27
2331 2617 6.303839 GGGCACAGATGTAAAAATCCCTATA 58.696 40.000 0.00 0.00 0.00 1.31
2357 2643 9.834628 ATTTTAACACATAACATGAAACTACCG 57.165 29.630 0.00 0.00 0.00 4.02
2358 2644 8.604640 TTTAACACATAACATGAAACTACCGA 57.395 30.769 0.00 0.00 0.00 4.69
2359 2645 6.476243 AACACATAACATGAAACTACCGAC 57.524 37.500 0.00 0.00 0.00 4.79
2360 2646 5.543714 ACACATAACATGAAACTACCGACA 58.456 37.500 0.00 0.00 0.00 4.35
2361 2647 5.992829 ACACATAACATGAAACTACCGACAA 59.007 36.000 0.00 0.00 0.00 3.18
2362 2648 6.073440 ACACATAACATGAAACTACCGACAAC 60.073 38.462 0.00 0.00 0.00 3.32
2363 2649 5.992829 ACATAACATGAAACTACCGACAACA 59.007 36.000 0.00 0.00 0.00 3.33
2364 2650 6.483974 ACATAACATGAAACTACCGACAACAA 59.516 34.615 0.00 0.00 0.00 2.83
2365 2651 7.174253 ACATAACATGAAACTACCGACAACAAT 59.826 33.333 0.00 0.00 0.00 2.71
2366 2652 5.356882 ACATGAAACTACCGACAACAATG 57.643 39.130 0.00 0.00 0.00 2.82
2367 2653 4.819630 ACATGAAACTACCGACAACAATGT 59.180 37.500 0.00 0.00 44.25 2.71
2368 2654 5.298276 ACATGAAACTACCGACAACAATGTT 59.702 36.000 0.00 0.00 40.74 2.71
2369 2655 5.163302 TGAAACTACCGACAACAATGTTG 57.837 39.130 23.00 23.00 40.74 3.33
2370 2656 4.876679 TGAAACTACCGACAACAATGTTGA 59.123 37.500 30.09 8.54 42.66 3.18
2371 2657 4.806342 AACTACCGACAACAATGTTGAC 57.194 40.909 30.09 22.94 42.66 3.18
2372 2658 2.798283 ACTACCGACAACAATGTTGACG 59.202 45.455 32.13 32.13 42.66 4.35
2373 2659 1.942677 ACCGACAACAATGTTGACGA 58.057 45.000 37.27 0.00 42.66 4.20
2374 2660 2.489971 ACCGACAACAATGTTGACGAT 58.510 42.857 37.27 26.67 42.66 3.73
2375 2661 2.223144 ACCGACAACAATGTTGACGATG 59.777 45.455 37.27 27.68 42.66 3.84
2376 2662 2.223144 CCGACAACAATGTTGACGATGT 59.777 45.455 37.27 17.14 42.66 3.06
2377 2663 3.217608 CGACAACAATGTTGACGATGTG 58.782 45.455 34.29 13.49 42.66 3.21
2378 2664 3.059935 CGACAACAATGTTGACGATGTGA 60.060 43.478 34.29 0.00 42.66 3.58
2379 2665 4.377328 CGACAACAATGTTGACGATGTGAT 60.377 41.667 34.29 11.58 42.66 3.06
2380 2666 5.034554 ACAACAATGTTGACGATGTGATC 57.965 39.130 30.09 0.00 35.91 2.92
2381 2667 4.756642 ACAACAATGTTGACGATGTGATCT 59.243 37.500 30.09 2.56 35.91 2.75
2382 2668 5.106948 ACAACAATGTTGACGATGTGATCTC 60.107 40.000 30.09 0.00 35.91 2.75
2383 2669 3.614176 ACAATGTTGACGATGTGATCTCG 59.386 43.478 0.00 1.64 41.77 4.04
2394 2680 6.792326 ACGATGTGATCTCGTAGTTATTTCA 58.208 36.000 6.70 0.00 46.71 2.69
2395 2681 7.426410 ACGATGTGATCTCGTAGTTATTTCAT 58.574 34.615 6.70 0.00 46.71 2.57
2396 2682 8.565416 ACGATGTGATCTCGTAGTTATTTCATA 58.435 33.333 6.70 0.00 46.71 2.15
2397 2683 9.394477 CGATGTGATCTCGTAGTTATTTCATAA 57.606 33.333 0.00 0.00 0.00 1.90
2402 2688 9.529325 TGATCTCGTAGTTATTTCATAAGTTGG 57.471 33.333 0.00 0.00 31.26 3.77
2403 2689 8.888579 ATCTCGTAGTTATTTCATAAGTTGGG 57.111 34.615 0.00 0.00 31.26 4.12
2404 2690 7.844009 TCTCGTAGTTATTTCATAAGTTGGGT 58.156 34.615 0.00 0.00 31.26 4.51
2405 2691 7.977853 TCTCGTAGTTATTTCATAAGTTGGGTC 59.022 37.037 0.00 0.00 31.26 4.46
2406 2692 7.844009 TCGTAGTTATTTCATAAGTTGGGTCT 58.156 34.615 0.00 0.00 31.26 3.85
2407 2693 7.762615 TCGTAGTTATTTCATAAGTTGGGTCTG 59.237 37.037 0.00 0.00 31.26 3.51
2408 2694 7.548075 CGTAGTTATTTCATAAGTTGGGTCTGT 59.452 37.037 0.00 0.00 31.26 3.41
2409 2695 7.923414 AGTTATTTCATAAGTTGGGTCTGTC 57.077 36.000 0.00 0.00 0.00 3.51
2410 2696 6.884836 AGTTATTTCATAAGTTGGGTCTGTCC 59.115 38.462 0.00 0.00 0.00 4.02
2411 2697 4.715534 TTTCATAAGTTGGGTCTGTCCA 57.284 40.909 0.00 0.00 38.11 4.02
2412 2698 3.981071 TCATAAGTTGGGTCTGTCCAG 57.019 47.619 0.00 0.00 38.17 3.86
2413 2699 2.027192 TCATAAGTTGGGTCTGTCCAGC 60.027 50.000 0.00 0.00 38.17 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 21 5.004726 GCGTCAAATGAGCACCATTAATTTC 59.995 40.000 5.03 0.00 44.28 2.17
102 116 5.391203 GCCGTTCGTGGTTTTATAAGACAAT 60.391 40.000 8.28 0.00 0.00 2.71
117 132 1.203313 GAAACCTTCGCCGTTCGTG 59.797 57.895 0.00 0.00 39.67 4.35
259 274 1.883732 CGCGAGGGTATGATCGGAT 59.116 57.895 0.00 0.00 39.31 4.18
295 312 7.625682 ACCTAATTCCTTCTAGAAGACCAGATT 59.374 37.037 30.17 21.41 40.79 2.40
345 362 0.321653 GTCCTTGTGATCCAACGGCT 60.322 55.000 0.00 0.00 0.00 5.52
465 484 1.051556 TGGTTTCCTTTTGGGCCCAC 61.052 55.000 28.70 10.56 40.87 4.61
544 565 2.324014 AAACAGAGCCAGCACGTCCA 62.324 55.000 0.00 0.00 0.00 4.02
545 566 1.166531 AAAACAGAGCCAGCACGTCC 61.167 55.000 0.00 0.00 0.00 4.79
546 567 0.663153 AAAAACAGAGCCAGCACGTC 59.337 50.000 0.00 0.00 0.00 4.34
589 666 3.982701 TGCAAAAATCAGAGCAAACGATG 59.017 39.130 0.00 0.00 33.48 3.84
590 667 4.241590 TGCAAAAATCAGAGCAAACGAT 57.758 36.364 0.00 0.00 33.48 3.73
591 668 3.706802 TGCAAAAATCAGAGCAAACGA 57.293 38.095 0.00 0.00 33.48 3.85
592 669 3.058520 CGATGCAAAAATCAGAGCAAACG 59.941 43.478 0.00 0.00 40.76 3.60
593 670 3.983344 ACGATGCAAAAATCAGAGCAAAC 59.017 39.130 0.00 0.00 40.76 2.93
596 673 3.921119 AACGATGCAAAAATCAGAGCA 57.079 38.095 0.00 0.00 41.73 4.26
597 674 4.229096 TCAAACGATGCAAAAATCAGAGC 58.771 39.130 0.00 0.00 0.00 4.09
598 675 6.752335 TTTCAAACGATGCAAAAATCAGAG 57.248 33.333 0.00 0.00 0.00 3.35
599 676 7.565848 CAATTTCAAACGATGCAAAAATCAGA 58.434 30.769 0.00 0.00 0.00 3.27
600 677 6.301372 GCAATTTCAAACGATGCAAAAATCAG 59.699 34.615 0.00 0.00 37.00 2.90
601 678 6.134730 GCAATTTCAAACGATGCAAAAATCA 58.865 32.000 0.00 0.00 37.00 2.57
602 679 5.278827 CGCAATTTCAAACGATGCAAAAATC 59.721 36.000 0.00 0.00 36.84 2.17
757 1007 7.957484 GTGGTTTGAAAAAGAAGAAGAAAAAGC 59.043 33.333 0.00 0.00 0.00 3.51
871 1121 0.179100 AGCCGTAGTGCTATGTGCTG 60.179 55.000 11.10 0.00 40.56 4.41
873 1123 3.959478 TAGCCGTAGTGCTATGTGC 57.041 52.632 0.00 2.13 42.75 4.57
913 1163 1.739750 GGAGATGGATGAGGGATGGT 58.260 55.000 0.00 0.00 0.00 3.55
996 1249 2.824041 CCGGTGTACTGCATGGCC 60.824 66.667 0.00 0.00 0.00 5.36
1101 1354 2.111999 TTGCGGTCCTCCACCTTGAG 62.112 60.000 0.00 0.00 44.21 3.02
1190 1443 1.866015 TTGGATGACCTCCTCGACAT 58.134 50.000 0.00 0.00 45.21 3.06
1235 1488 2.158885 TCGAATGTGTTGGTGAAGTGGA 60.159 45.455 0.00 0.00 0.00 4.02
1259 1512 1.153349 CGGCCAAGGAGGTAGAAGC 60.153 63.158 2.24 0.00 40.61 3.86
1272 1525 2.835431 CACCAAAACACCCGGCCA 60.835 61.111 2.24 0.00 0.00 5.36
1431 1685 3.068691 CCGCCTTCTCCACCTCGA 61.069 66.667 0.00 0.00 0.00 4.04
1505 1766 7.094890 CCATAGCATCTCCAACATAGTTCAATC 60.095 40.741 0.00 0.00 0.00 2.67
1737 2006 6.000219 CACTAGCTAGGTGGCATCATATTTT 59.000 40.000 24.35 0.00 34.17 1.82
1745 2014 1.135094 ATGCACTAGCTAGGTGGCAT 58.865 50.000 29.05 29.05 42.74 4.40
1746 2015 0.178767 CATGCACTAGCTAGGTGGCA 59.821 55.000 27.79 27.79 42.74 4.92
1850 2119 6.334989 TCCTCGATTTAGAGCATCGTTTTTA 58.665 36.000 3.66 0.00 43.36 1.52
1943 2212 0.389817 CACTGACCGAGCCGATTTCA 60.390 55.000 0.00 0.00 0.00 2.69
1948 2217 3.356639 GATGCACTGACCGAGCCGA 62.357 63.158 0.00 0.00 0.00 5.54
2039 2323 1.152483 ATGCACCCAACAAGCCTGT 60.152 52.632 0.00 0.00 37.39 4.00
2095 2379 0.892063 GGCCGTCCCTTGCATTAAAA 59.108 50.000 0.00 0.00 0.00 1.52
2135 2419 1.669440 GGGGTGTAGCTGTTCGACA 59.331 57.895 0.00 0.00 0.00 4.35
2159 2444 2.997315 CTCTGACGAGTGGGGCCA 60.997 66.667 4.39 0.00 32.47 5.36
2256 2541 3.545633 CACGCTCTTAACTTTTGCTCAC 58.454 45.455 0.00 0.00 0.00 3.51
2331 2617 9.834628 CGGTAGTTTCATGTTATGTGTTAAAAT 57.165 29.630 0.00 0.00 0.00 1.82
2340 2626 6.474819 TGTTGTCGGTAGTTTCATGTTATG 57.525 37.500 0.00 0.00 0.00 1.90
2346 2632 5.529430 TCAACATTGTTGTCGGTAGTTTCAT 59.471 36.000 24.71 0.00 34.06 2.57
2347 2633 4.876679 TCAACATTGTTGTCGGTAGTTTCA 59.123 37.500 24.71 2.85 34.06 2.69
2348 2634 5.202640 GTCAACATTGTTGTCGGTAGTTTC 58.797 41.667 24.71 5.05 34.06 2.78
2349 2635 4.260456 CGTCAACATTGTTGTCGGTAGTTT 60.260 41.667 29.18 0.00 34.06 2.66
2350 2636 3.246699 CGTCAACATTGTTGTCGGTAGTT 59.753 43.478 29.18 0.00 34.06 2.24
2351 2637 2.798283 CGTCAACATTGTTGTCGGTAGT 59.202 45.455 29.18 0.00 34.06 2.73
2352 2638 3.054166 TCGTCAACATTGTTGTCGGTAG 58.946 45.455 32.85 18.41 34.06 3.18
2353 2639 3.095102 TCGTCAACATTGTTGTCGGTA 57.905 42.857 32.85 20.63 34.06 4.02
2354 2640 1.942677 TCGTCAACATTGTTGTCGGT 58.057 45.000 32.85 0.62 34.06 4.69
2355 2641 2.223144 ACATCGTCAACATTGTTGTCGG 59.777 45.455 32.85 24.80 34.06 4.79
2356 2642 3.059935 TCACATCGTCAACATTGTTGTCG 60.060 43.478 30.24 30.24 34.06 4.35
2357 2643 4.466567 TCACATCGTCAACATTGTTGTC 57.533 40.909 24.71 19.43 34.06 3.18
2358 2644 4.756642 AGATCACATCGTCAACATTGTTGT 59.243 37.500 24.71 6.58 37.82 3.32
2359 2645 5.287170 AGATCACATCGTCAACATTGTTG 57.713 39.130 21.04 21.04 0.00 3.33
2360 2646 4.091945 CGAGATCACATCGTCAACATTGTT 59.908 41.667 0.00 0.00 35.48 2.83
2361 2647 3.614176 CGAGATCACATCGTCAACATTGT 59.386 43.478 0.00 0.00 35.48 2.71
2362 2648 4.174134 CGAGATCACATCGTCAACATTG 57.826 45.455 0.00 0.00 35.48 2.82
2371 2657 7.859613 ATGAAATAACTACGAGATCACATCG 57.140 36.000 0.00 0.00 45.54 3.84
2376 2662 9.529325 CCAACTTATGAAATAACTACGAGATCA 57.471 33.333 0.00 0.00 32.95 2.92
2377 2663 8.979574 CCCAACTTATGAAATAACTACGAGATC 58.020 37.037 0.00 0.00 32.95 2.75
2378 2664 8.483758 ACCCAACTTATGAAATAACTACGAGAT 58.516 33.333 0.00 0.00 32.95 2.75
2379 2665 7.844009 ACCCAACTTATGAAATAACTACGAGA 58.156 34.615 0.00 0.00 32.95 4.04
2380 2666 7.980099 AGACCCAACTTATGAAATAACTACGAG 59.020 37.037 0.00 0.00 32.95 4.18
2381 2667 7.762615 CAGACCCAACTTATGAAATAACTACGA 59.237 37.037 0.00 0.00 32.95 3.43
2382 2668 7.548075 ACAGACCCAACTTATGAAATAACTACG 59.452 37.037 0.00 0.00 32.95 3.51
2383 2669 8.788325 ACAGACCCAACTTATGAAATAACTAC 57.212 34.615 0.00 0.00 32.95 2.73
2384 2670 8.044908 GGACAGACCCAACTTATGAAATAACTA 58.955 37.037 0.00 0.00 32.95 2.24
2385 2671 6.884836 GGACAGACCCAACTTATGAAATAACT 59.115 38.462 0.00 0.00 32.95 2.24
2386 2672 6.657541 TGGACAGACCCAACTTATGAAATAAC 59.342 38.462 0.00 0.00 34.60 1.89
2387 2673 6.785076 TGGACAGACCCAACTTATGAAATAA 58.215 36.000 0.00 0.00 36.09 1.40
2388 2674 6.381498 TGGACAGACCCAACTTATGAAATA 57.619 37.500 0.00 0.00 38.00 1.40
2389 2675 5.255397 TGGACAGACCCAACTTATGAAAT 57.745 39.130 0.00 0.00 38.00 2.17
2390 2676 4.651778 CTGGACAGACCCAACTTATGAAA 58.348 43.478 0.00 0.00 35.47 2.69
2391 2677 3.559171 GCTGGACAGACCCAACTTATGAA 60.559 47.826 3.00 0.00 35.47 2.57
2392 2678 2.027192 GCTGGACAGACCCAACTTATGA 60.027 50.000 3.00 0.00 35.47 2.15
2393 2679 2.359900 GCTGGACAGACCCAACTTATG 58.640 52.381 3.00 0.00 35.47 1.90
2394 2680 2.789409 GCTGGACAGACCCAACTTAT 57.211 50.000 3.00 0.00 35.47 1.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.