Multiple sequence alignment - TraesCS4D01G095200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G095200 chr4D 100.000 2788 0 0 1 2788 70501048 70498261 0.000000e+00 5149.0
1 TraesCS4D01G095200 chr4D 91.128 541 28 12 256 789 446640832 446640305 0.000000e+00 715.0
2 TraesCS4D01G095200 chr4D 84.615 312 31 13 2101 2401 452317451 452317756 7.550000e-76 294.0
3 TraesCS4D01G095200 chr4A 91.925 1226 61 12 824 2033 524182578 524181375 0.000000e+00 1681.0
4 TraesCS4D01G095200 chr4A 85.455 165 16 2 15 171 524182809 524182645 6.180000e-37 165.0
5 TraesCS4D01G095200 chr1D 89.539 564 39 10 243 790 126610692 126610133 0.000000e+00 697.0
6 TraesCS4D01G095200 chr1D 93.536 263 16 1 2527 2788 112107772 112108034 9.360000e-105 390.0
7 TraesCS4D01G095200 chr1D 85.563 284 26 13 2100 2368 354715422 354715705 1.630000e-72 283.0
8 TraesCS4D01G095200 chr1D 95.385 130 6 0 2398 2527 222707394 222707265 1.010000e-49 207.0
9 TraesCS4D01G095200 chr1D 94.697 132 6 1 2396 2527 112107595 112107725 1.310000e-48 204.0
10 TraesCS4D01G095200 chr5D 88.562 577 34 18 236 790 480965480 480966046 0.000000e+00 671.0
11 TraesCS4D01G095200 chr5D 88.364 550 31 12 243 789 313204213 313203694 5.070000e-177 630.0
12 TraesCS4D01G095200 chr5D 86.738 558 56 12 240 788 110652493 110653041 3.070000e-169 604.0
13 TraesCS4D01G095200 chr5D 85.353 553 48 16 240 789 549881615 549882137 2.440000e-150 542.0
14 TraesCS4D01G095200 chr5D 84.009 444 49 20 360 796 237837526 237837954 9.300000e-110 407.0
15 TraesCS4D01G095200 chr5D 94.297 263 14 1 2527 2788 363110117 363109855 4.330000e-108 401.0
16 TraesCS4D01G095200 chr5D 84.039 307 35 11 2106 2401 338381920 338382223 1.630000e-72 283.0
17 TraesCS4D01G095200 chr7B 86.435 575 47 17 239 789 600449135 600448568 3.970000e-168 601.0
18 TraesCS4D01G095200 chr6A 85.766 555 59 15 240 788 161946110 161946650 1.120000e-158 569.0
19 TraesCS4D01G095200 chr3A 83.725 596 46 17 240 789 598539634 598540224 1.480000e-142 516.0
20 TraesCS4D01G095200 chr3A 82.997 594 47 15 240 789 507667408 507667991 3.230000e-134 488.0
21 TraesCS4D01G095200 chr3A 80.066 602 60 32 240 789 31682136 31682729 2.600000e-105 392.0
22 TraesCS4D01G095200 chr3A 80.926 367 44 20 243 600 746225277 746224928 1.650000e-67 267.0
23 TraesCS4D01G095200 chr1B 82.353 578 63 20 240 789 51966977 51967543 1.510000e-127 466.0
24 TraesCS4D01G095200 chr1B 84.887 311 30 10 2101 2401 342365534 342365231 5.840000e-77 298.0
25 TraesCS4D01G095200 chr1B 82.540 315 40 12 2097 2401 264347982 264347673 2.130000e-66 263.0
26 TraesCS4D01G095200 chr2D 89.008 373 18 3 2396 2747 42712780 42712410 9.170000e-120 440.0
27 TraesCS4D01G095200 chr2D 93.258 267 13 3 2527 2788 79475575 79475841 3.370000e-104 388.0
28 TraesCS4D01G095200 chr2D 84.818 303 30 14 2106 2397 616197675 616197972 9.770000e-75 291.0
29 TraesCS4D01G095200 chr5B 84.719 445 56 10 240 682 592209421 592209855 4.260000e-118 435.0
30 TraesCS4D01G095200 chrUn 92.157 306 23 1 1557 1862 54296816 54297120 5.520000e-117 431.0
31 TraesCS4D01G095200 chr7D 94.961 258 10 3 2534 2788 23936731 23936988 4.330000e-108 401.0
32 TraesCS4D01G095200 chr7D 94.697 132 7 0 2396 2527 297939037 297939168 3.640000e-49 206.0
33 TraesCS4D01G095200 chr6D 94.942 257 12 1 2533 2788 40049056 40048800 4.330000e-108 401.0
34 TraesCS4D01G095200 chr6D 93.962 265 8 5 2527 2788 297477449 297477708 7.240000e-106 394.0
35 TraesCS4D01G095200 chr6D 92.517 147 10 1 2382 2527 50613493 50613639 2.810000e-50 209.0
36 TraesCS4D01G095200 chr6D 94.776 134 7 0 2395 2528 336334114 336333981 2.810000e-50 209.0
37 TraesCS4D01G095200 chr1A 93.511 262 15 1 2527 2786 389628847 389628586 3.370000e-104 388.0
38 TraesCS4D01G095200 chr3D 93.208 265 15 1 2527 2788 26958826 26959090 1.210000e-103 387.0
39 TraesCS4D01G095200 chr5A 92.857 266 15 2 2527 2788 250227795 250227530 1.570000e-102 383.0
40 TraesCS4D01G095200 chr5A 86.538 312 28 10 2101 2401 342046127 342046435 5.760000e-87 331.0
41 TraesCS4D01G095200 chr5A 86.129 310 29 12 2102 2401 340475798 340476103 3.460000e-84 322.0
42 TraesCS4D01G095200 chr4B 94.118 187 11 0 1575 1761 104440371 104440185 4.540000e-73 285.0
43 TraesCS4D01G095200 chr4B 86.802 197 22 2 2404 2600 555301446 555301638 1.680000e-52 217.0
44 TraesCS4D01G095200 chr4B 95.833 120 4 1 1130 1249 104442047 104441929 2.830000e-45 193.0
45 TraesCS4D01G095200 chr3B 83.548 310 34 13 2101 2401 530240483 530240182 9.840000e-70 274.0
46 TraesCS4D01G095200 chr2B 85.990 207 27 2 2396 2600 91462823 91462617 1.300000e-53 220.0
47 TraesCS4D01G095200 chr2B 94.118 51 3 0 92 142 518760457 518760407 8.280000e-11 78.7
48 TraesCS4D01G095200 chr2A 93.382 136 9 0 2392 2527 368136061 368135926 4.710000e-48 202.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G095200 chr4D 70498261 70501048 2787 True 5149 5149 100.0000 1 2788 1 chr4D.!!$R1 2787
1 TraesCS4D01G095200 chr4D 446640305 446640832 527 True 715 715 91.1280 256 789 1 chr4D.!!$R2 533
2 TraesCS4D01G095200 chr4A 524181375 524182809 1434 True 923 1681 88.6900 15 2033 2 chr4A.!!$R1 2018
3 TraesCS4D01G095200 chr1D 126610133 126610692 559 True 697 697 89.5390 243 790 1 chr1D.!!$R1 547
4 TraesCS4D01G095200 chr5D 480965480 480966046 566 False 671 671 88.5620 236 790 1 chr5D.!!$F4 554
5 TraesCS4D01G095200 chr5D 313203694 313204213 519 True 630 630 88.3640 243 789 1 chr5D.!!$R1 546
6 TraesCS4D01G095200 chr5D 110652493 110653041 548 False 604 604 86.7380 240 788 1 chr5D.!!$F1 548
7 TraesCS4D01G095200 chr5D 549881615 549882137 522 False 542 542 85.3530 240 789 1 chr5D.!!$F5 549
8 TraesCS4D01G095200 chr7B 600448568 600449135 567 True 601 601 86.4350 239 789 1 chr7B.!!$R1 550
9 TraesCS4D01G095200 chr6A 161946110 161946650 540 False 569 569 85.7660 240 788 1 chr6A.!!$F1 548
10 TraesCS4D01G095200 chr3A 598539634 598540224 590 False 516 516 83.7250 240 789 1 chr3A.!!$F3 549
11 TraesCS4D01G095200 chr3A 507667408 507667991 583 False 488 488 82.9970 240 789 1 chr3A.!!$F2 549
12 TraesCS4D01G095200 chr3A 31682136 31682729 593 False 392 392 80.0660 240 789 1 chr3A.!!$F1 549
13 TraesCS4D01G095200 chr1B 51966977 51967543 566 False 466 466 82.3530 240 789 1 chr1B.!!$F1 549
14 TraesCS4D01G095200 chr4B 104440185 104442047 1862 True 239 285 94.9755 1130 1761 2 chr4B.!!$R1 631

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
36 37 0.10741 CTACTGTGCCGGCCCAATAA 60.107 55.0 26.77 5.62 0.0 1.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1819 3187 0.550914 GCCAACATGAGGGGATGGTA 59.449 55.0 0.0 0.0 33.63 3.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 1.524961 CTACTGTGCCGGCCCAATA 59.475 57.895 26.77 12.70 0.00 1.90
36 37 0.107410 CTACTGTGCCGGCCCAATAA 60.107 55.000 26.77 5.62 0.00 1.40
113 122 2.839486 TGTCCATGAGCGAAGAAACT 57.161 45.000 0.00 0.00 0.00 2.66
121 130 7.595130 GTCCATGAGCGAAGAAACTTTAATTTT 59.405 33.333 0.00 0.00 0.00 1.82
125 134 7.138736 TGAGCGAAGAAACTTTAATTTTGAGG 58.861 34.615 0.00 0.00 0.00 3.86
129 138 7.363431 CGAAGAAACTTTAATTTTGAGGCTCT 58.637 34.615 16.72 0.00 0.00 4.09
142 151 2.360483 TGAGGCTCTCAATCTCGCTAAG 59.640 50.000 16.72 0.00 37.57 2.18
164 173 7.852971 AAGTTTGCGTATAACTTAGGCATAA 57.147 32.000 10.38 0.00 42.39 1.90
210 221 3.346315 CTCATGACCCAATGCTTGTACA 58.654 45.455 0.00 0.00 0.00 2.90
214 225 5.532032 TCATGACCCAATGCTTGTACATATG 59.468 40.000 0.00 0.00 0.00 1.78
228 239 8.668353 GCTTGTACATATGAAGATCACTTTGAA 58.332 33.333 10.38 0.00 36.39 2.69
528 588 6.847956 TGAACTTTTGCAAAATTGGATGAG 57.152 33.333 24.06 12.63 0.00 2.90
710 802 1.712000 AAAACCTGGGGGCAGTACGT 61.712 55.000 0.00 0.00 35.63 3.57
790 888 2.446848 GCTGCATAGGAGCTCCCCA 61.447 63.158 29.54 17.98 36.42 4.96
791 889 1.987807 GCTGCATAGGAGCTCCCCAA 61.988 60.000 29.54 15.61 36.42 4.12
792 890 0.769873 CTGCATAGGAGCTCCCCAAT 59.230 55.000 29.54 17.22 36.42 3.16
793 891 1.980765 CTGCATAGGAGCTCCCCAATA 59.019 52.381 29.54 15.33 36.42 1.90
794 892 2.373169 CTGCATAGGAGCTCCCCAATAA 59.627 50.000 29.54 10.09 36.42 1.40
795 893 2.782925 TGCATAGGAGCTCCCCAATAAA 59.217 45.455 29.54 6.60 36.42 1.40
796 894 3.181440 TGCATAGGAGCTCCCCAATAAAG 60.181 47.826 29.54 12.46 36.42 1.85
797 895 3.181439 GCATAGGAGCTCCCCAATAAAGT 60.181 47.826 29.54 9.89 36.42 2.66
800 898 2.919602 AGGAGCTCCCCAATAAAGTTGA 59.080 45.455 29.54 0.00 36.42 3.18
804 902 3.054361 AGCTCCCCAATAAAGTTGACGAT 60.054 43.478 0.00 0.00 0.00 3.73
805 903 3.065371 GCTCCCCAATAAAGTTGACGATG 59.935 47.826 0.00 0.00 0.00 3.84
813 911 8.388103 CCCAATAAAGTTGACGATGTTACTAAG 58.612 37.037 0.00 0.00 0.00 2.18
814 912 9.146984 CCAATAAAGTTGACGATGTTACTAAGA 57.853 33.333 0.00 0.00 0.00 2.10
839 937 0.391263 AATCCGGCCGAAAGACTGAC 60.391 55.000 30.73 0.00 0.00 3.51
845 943 1.376037 CCGAAAGACTGACCTGGGC 60.376 63.158 0.00 0.00 0.00 5.36
854 952 3.866582 GACCTGGGCCCATCGGAG 61.867 72.222 31.81 17.99 0.00 4.63
900 998 4.147449 CGAGCCACCATCGAGCCA 62.147 66.667 0.00 0.00 42.76 4.75
999 1097 3.841222 GGTTGCAAAACGGCATCG 58.159 55.556 0.00 0.00 44.48 3.84
1000 1098 1.284408 GGTTGCAAAACGGCATCGA 59.716 52.632 0.00 0.00 44.48 3.59
1001 1099 0.109319 GGTTGCAAAACGGCATCGAT 60.109 50.000 0.00 0.00 44.48 3.59
1002 1100 0.984109 GTTGCAAAACGGCATCGATG 59.016 50.000 21.27 21.27 44.48 3.84
1205 1303 5.047872 GGGCCAATTTACTTTTCTTAACCGA 60.048 40.000 4.39 0.00 0.00 4.69
1249 1347 0.179001 TCGGATCGATCCTGCACCTA 60.179 55.000 35.31 14.30 44.93 3.08
1268 1366 3.561310 CCTATACCTGTACGCAACGTAGA 59.439 47.826 0.00 0.00 43.06 2.59
1284 1475 4.566004 ACGTAGATTTATACATGCGGCAT 58.434 39.130 10.23 10.23 0.00 4.40
1289 1480 5.065914 AGATTTATACATGCGGCATCAGTT 58.934 37.500 13.53 1.16 0.00 3.16
1352 1551 9.463902 TTCTTTTGTGCTCTACTAGTAGATAGT 57.536 33.333 28.52 0.00 46.70 2.12
1465 2805 1.482593 AGCCATGCACCAGACTAGTAC 59.517 52.381 0.00 0.00 0.00 2.73
1541 2888 3.888930 TGTGGTTTTCCTGTTTCTGGATC 59.111 43.478 0.00 0.00 41.38 3.36
1573 2941 5.278561 CGCCCTGTTATTTTGTTGGACTAAA 60.279 40.000 0.00 0.00 0.00 1.85
1613 2981 3.181493 GCCTGCAGGTATCATTGTTCTTG 60.181 47.826 32.81 2.84 37.57 3.02
1730 3098 3.119566 CCTTACCGGTGACAGAGTACTTC 60.120 52.174 19.93 0.00 0.00 3.01
1779 3147 1.747355 CAGATGGTTTGATGTGGAGGC 59.253 52.381 0.00 0.00 0.00 4.70
1816 3184 1.912043 AGCATTCTCTAGCCCACACTT 59.088 47.619 0.00 0.00 0.00 3.16
1819 3187 3.683847 GCATTCTCTAGCCCACACTTGAT 60.684 47.826 0.00 0.00 0.00 2.57
1834 3202 3.137176 CACTTGATACCATCCCCTCATGT 59.863 47.826 0.00 0.00 0.00 3.21
1836 3204 3.862877 TGATACCATCCCCTCATGTTG 57.137 47.619 0.00 0.00 0.00 3.33
1867 3235 7.341769 ACATGTTTGGTACTGTTATTGGCATAT 59.658 33.333 0.00 0.00 0.00 1.78
1877 3247 8.888579 ACTGTTATTGGCATATAGTACTTGTC 57.111 34.615 0.00 0.00 0.00 3.18
1891 3261 3.045601 ACTTGTCATGTGCTGTCCTAC 57.954 47.619 0.00 0.00 0.00 3.18
1898 3268 3.141398 CATGTGCTGTCCTACTTTGTGT 58.859 45.455 0.00 0.00 0.00 3.72
1905 3275 5.359576 TGCTGTCCTACTTTGTGTCATTTTT 59.640 36.000 0.00 0.00 0.00 1.94
1915 3285 6.767902 ACTTTGTGTCATTTTTAGAGCTCTGA 59.232 34.615 26.78 16.07 0.00 3.27
1918 3288 5.012046 TGTGTCATTTTTAGAGCTCTGAGGA 59.988 40.000 26.78 12.97 0.00 3.71
1919 3289 5.934625 GTGTCATTTTTAGAGCTCTGAGGAA 59.065 40.000 26.78 16.02 0.00 3.36
1921 3291 7.766278 GTGTCATTTTTAGAGCTCTGAGGAATA 59.234 37.037 26.78 10.63 0.00 1.75
1922 3292 7.766278 TGTCATTTTTAGAGCTCTGAGGAATAC 59.234 37.037 26.78 15.98 0.00 1.89
1923 3293 6.980978 TCATTTTTAGAGCTCTGAGGAATACG 59.019 38.462 26.78 10.75 0.00 3.06
1924 3294 5.916661 TTTTAGAGCTCTGAGGAATACGT 57.083 39.130 26.78 0.00 0.00 3.57
1925 3295 4.902443 TTAGAGCTCTGAGGAATACGTG 57.098 45.455 26.78 0.00 0.00 4.49
1926 3296 2.729194 AGAGCTCTGAGGAATACGTGT 58.271 47.619 17.42 0.00 0.00 4.49
1927 3297 2.425312 AGAGCTCTGAGGAATACGTGTG 59.575 50.000 17.42 0.00 0.00 3.82
1928 3298 2.423892 GAGCTCTGAGGAATACGTGTGA 59.576 50.000 6.43 0.00 0.00 3.58
1929 3299 2.425312 AGCTCTGAGGAATACGTGTGAG 59.575 50.000 6.83 0.00 0.00 3.51
1930 3300 2.803451 CTCTGAGGAATACGTGTGAGC 58.197 52.381 0.00 0.00 0.00 4.26
1931 3301 1.476891 TCTGAGGAATACGTGTGAGCC 59.523 52.381 0.00 0.00 0.00 4.70
1941 3311 2.981898 ACGTGTGAGCCTTATAAACCC 58.018 47.619 0.00 0.00 0.00 4.11
1955 3325 1.439679 AAACCCGAAACGAGAGATGC 58.560 50.000 0.00 0.00 0.00 3.91
1957 3327 1.878522 CCCGAAACGAGAGATGCCG 60.879 63.158 0.00 0.00 0.00 5.69
1964 3334 3.627732 AACGAGAGATGCCGTACTATG 57.372 47.619 0.00 0.00 38.13 2.23
1967 3337 3.243101 ACGAGAGATGCCGTACTATGTTG 60.243 47.826 0.00 0.00 37.23 3.33
1978 3348 5.627172 CCGTACTATGTTGTTCCAATGTTG 58.373 41.667 0.00 0.00 0.00 3.33
1979 3349 5.180492 CCGTACTATGTTGTTCCAATGTTGT 59.820 40.000 0.00 0.00 0.00 3.32
1982 3352 7.902917 CGTACTATGTTGTTCCAATGTTGTATG 59.097 37.037 0.00 0.00 0.00 2.39
1986 3356 5.595885 TGTTGTTCCAATGTTGTATGTTGG 58.404 37.500 0.00 0.00 42.91 3.77
1996 3366 7.397970 CAATGTTGTATGTTGGTGTTGTTTTC 58.602 34.615 0.00 0.00 0.00 2.29
2001 3371 7.209471 TGTATGTTGGTGTTGTTTTCCTATC 57.791 36.000 0.00 0.00 0.00 2.08
2003 3373 8.158132 TGTATGTTGGTGTTGTTTTCCTATCTA 58.842 33.333 0.00 0.00 0.00 1.98
2006 3376 7.227873 TGTTGGTGTTGTTTTCCTATCTATGA 58.772 34.615 0.00 0.00 0.00 2.15
2036 3406 9.920133 CTACATGCCTGTTATATATATAGCTGG 57.080 37.037 25.52 25.52 39.64 4.85
2037 3407 7.739825 ACATGCCTGTTATATATATAGCTGGG 58.260 38.462 28.19 22.41 38.23 4.45
2038 3408 6.174720 TGCCTGTTATATATATAGCTGGGC 57.825 41.667 28.19 27.46 38.23 5.36
2039 3409 5.665360 TGCCTGTTATATATATAGCTGGGCA 59.335 40.000 29.33 29.33 41.28 5.36
2040 3410 6.157820 TGCCTGTTATATATATAGCTGGGCAA 59.842 38.462 30.03 21.77 40.99 4.52
2041 3411 7.147320 TGCCTGTTATATATATAGCTGGGCAAT 60.147 37.037 30.03 3.96 40.99 3.56
2042 3412 8.375506 GCCTGTTATATATATAGCTGGGCAATA 58.624 37.037 28.19 6.69 38.23 1.90
2053 3423 9.715121 ATATAGCTGGGCAATAAATCAATTTTG 57.285 29.630 0.00 0.00 0.00 2.44
2054 3424 5.807909 AGCTGGGCAATAAATCAATTTTGT 58.192 33.333 0.00 0.00 0.00 2.83
2055 3425 6.240145 AGCTGGGCAATAAATCAATTTTGTT 58.760 32.000 0.00 0.00 0.00 2.83
2056 3426 6.149807 AGCTGGGCAATAAATCAATTTTGTTG 59.850 34.615 0.00 3.96 44.65 3.33
2064 3434 9.749490 CAATAAATCAATTTTGTTGCACTGATC 57.251 29.630 0.00 0.00 38.86 2.92
2065 3435 9.491675 AATAAATCAATTTTGTTGCACTGATCA 57.508 25.926 0.00 0.00 28.67 2.92
2066 3436 7.789273 AAATCAATTTTGTTGCACTGATCAA 57.211 28.000 0.00 0.00 0.00 2.57
2067 3437 6.774354 ATCAATTTTGTTGCACTGATCAAC 57.226 33.333 0.00 8.87 42.91 3.18
2068 3438 5.049167 TCAATTTTGTTGCACTGATCAACC 58.951 37.500 0.00 0.00 42.17 3.77
2069 3439 4.669206 ATTTTGTTGCACTGATCAACCA 57.331 36.364 0.00 0.00 42.17 3.67
2070 3440 3.435105 TTTGTTGCACTGATCAACCAC 57.565 42.857 0.00 0.00 42.17 4.16
2071 3441 2.049888 TGTTGCACTGATCAACCACA 57.950 45.000 0.00 0.00 42.17 4.17
2072 3442 2.373224 TGTTGCACTGATCAACCACAA 58.627 42.857 0.00 0.00 42.17 3.33
2073 3443 2.757314 TGTTGCACTGATCAACCACAAA 59.243 40.909 0.00 0.00 42.17 2.83
2074 3444 3.115554 GTTGCACTGATCAACCACAAAC 58.884 45.455 0.00 0.00 38.21 2.93
2075 3445 2.373224 TGCACTGATCAACCACAAACA 58.627 42.857 0.00 0.00 0.00 2.83
2076 3446 2.098934 TGCACTGATCAACCACAAACAC 59.901 45.455 0.00 0.00 0.00 3.32
2077 3447 2.854424 GCACTGATCAACCACAAACACG 60.854 50.000 0.00 0.00 0.00 4.49
2078 3448 2.611751 CACTGATCAACCACAAACACGA 59.388 45.455 0.00 0.00 0.00 4.35
2079 3449 2.872245 ACTGATCAACCACAAACACGAG 59.128 45.455 0.00 0.00 0.00 4.18
2080 3450 2.872245 CTGATCAACCACAAACACGAGT 59.128 45.455 0.00 0.00 0.00 4.18
2081 3451 2.869801 TGATCAACCACAAACACGAGTC 59.130 45.455 0.00 0.00 0.00 3.36
2082 3452 1.282817 TCAACCACAAACACGAGTCG 58.717 50.000 11.85 11.85 0.00 4.18
2083 3453 1.003851 CAACCACAAACACGAGTCGT 58.996 50.000 13.56 13.56 42.36 4.34
2084 3454 1.395608 CAACCACAAACACGAGTCGTT 59.604 47.619 17.16 4.97 38.32 3.85
2085 3455 1.729284 ACCACAAACACGAGTCGTTT 58.271 45.000 17.16 7.05 38.32 3.60
2088 3458 3.142796 CAAACACGAGTCGTTTGGC 57.857 52.632 17.16 0.00 46.06 4.52
2089 3459 0.375454 CAAACACGAGTCGTTTGGCA 59.625 50.000 17.16 0.00 46.06 4.92
2090 3460 1.002900 CAAACACGAGTCGTTTGGCAT 60.003 47.619 17.16 0.00 46.06 4.40
2091 3461 0.865769 AACACGAGTCGTTTGGCATC 59.134 50.000 17.16 0.00 38.32 3.91
2092 3462 0.033504 ACACGAGTCGTTTGGCATCT 59.966 50.000 17.16 0.00 38.32 2.90
2093 3463 1.271379 ACACGAGTCGTTTGGCATCTA 59.729 47.619 17.16 0.00 38.32 1.98
2094 3464 2.094182 ACACGAGTCGTTTGGCATCTAT 60.094 45.455 17.16 0.00 38.32 1.98
2095 3465 2.282555 CACGAGTCGTTTGGCATCTATG 59.717 50.000 17.16 0.00 38.32 2.23
2096 3466 2.094182 ACGAGTCGTTTGGCATCTATGT 60.094 45.455 13.56 0.00 36.35 2.29
2097 3467 3.129813 ACGAGTCGTTTGGCATCTATGTA 59.870 43.478 13.56 0.00 36.35 2.29
2098 3468 3.486108 CGAGTCGTTTGGCATCTATGTAC 59.514 47.826 3.82 0.00 0.00 2.90
2099 3469 4.683832 GAGTCGTTTGGCATCTATGTACT 58.316 43.478 0.00 0.00 0.00 2.73
2100 3470 4.433615 AGTCGTTTGGCATCTATGTACTG 58.566 43.478 0.00 0.00 0.00 2.74
2101 3471 3.555956 GTCGTTTGGCATCTATGTACTGG 59.444 47.826 0.00 0.00 0.00 4.00
2102 3472 2.872245 CGTTTGGCATCTATGTACTGGG 59.128 50.000 0.00 0.00 0.00 4.45
2103 3473 3.214328 GTTTGGCATCTATGTACTGGGG 58.786 50.000 0.00 0.00 0.00 4.96
2104 3474 2.190398 TGGCATCTATGTACTGGGGT 57.810 50.000 0.00 0.00 0.00 4.95
2105 3475 3.338110 TGGCATCTATGTACTGGGGTA 57.662 47.619 0.00 0.00 0.00 3.69
2106 3476 3.239449 TGGCATCTATGTACTGGGGTAG 58.761 50.000 0.00 0.00 0.00 3.18
2107 3477 3.116900 TGGCATCTATGTACTGGGGTAGA 60.117 47.826 0.00 0.00 0.00 2.59
2108 3478 3.258622 GGCATCTATGTACTGGGGTAGAC 59.741 52.174 0.00 0.00 0.00 2.59
2109 3479 4.153411 GCATCTATGTACTGGGGTAGACT 58.847 47.826 0.00 0.00 0.00 3.24
2110 3480 4.589374 GCATCTATGTACTGGGGTAGACTT 59.411 45.833 0.00 0.00 0.00 3.01
2111 3481 5.509840 GCATCTATGTACTGGGGTAGACTTG 60.510 48.000 0.00 0.00 0.00 3.16
2112 3482 5.202746 TCTATGTACTGGGGTAGACTTGT 57.797 43.478 0.00 0.00 0.00 3.16
2113 3483 4.954202 TCTATGTACTGGGGTAGACTTGTG 59.046 45.833 0.00 0.00 0.00 3.33
2114 3484 2.966915 TGTACTGGGGTAGACTTGTGT 58.033 47.619 0.00 0.00 0.00 3.72
2115 3485 2.631062 TGTACTGGGGTAGACTTGTGTG 59.369 50.000 0.00 0.00 0.00 3.82
2116 3486 2.097110 ACTGGGGTAGACTTGTGTGA 57.903 50.000 0.00 0.00 0.00 3.58
2117 3487 1.971357 ACTGGGGTAGACTTGTGTGAG 59.029 52.381 0.00 0.00 0.00 3.51
2118 3488 2.248248 CTGGGGTAGACTTGTGTGAGA 58.752 52.381 0.00 0.00 0.00 3.27
2119 3489 2.834549 CTGGGGTAGACTTGTGTGAGAT 59.165 50.000 0.00 0.00 0.00 2.75
2120 3490 2.832129 TGGGGTAGACTTGTGTGAGATC 59.168 50.000 0.00 0.00 0.00 2.75
2121 3491 2.832129 GGGGTAGACTTGTGTGAGATCA 59.168 50.000 0.00 0.00 0.00 2.92
2122 3492 3.368531 GGGGTAGACTTGTGTGAGATCAC 60.369 52.174 6.01 6.01 46.59 3.06
2211 3581 9.598517 AAAAATTTGTAGACACACATCAATGTT 57.401 25.926 0.00 0.00 39.39 2.71
2212 3582 9.598517 AAAATTTGTAGACACACATCAATGTTT 57.401 25.926 0.00 0.00 39.39 2.83
2213 3583 8.578308 AATTTGTAGACACACATCAATGTTTG 57.422 30.769 7.54 7.54 42.52 2.93
2214 3584 6.934048 TTGTAGACACACATCAATGTTTGA 57.066 33.333 14.44 0.00 40.04 2.69
2238 3608 9.624697 TGATGTACAATCTTACAAAAATTCAGC 57.375 29.630 0.00 0.00 35.60 4.26
2239 3609 9.846248 GATGTACAATCTTACAAAAATTCAGCT 57.154 29.630 0.00 0.00 35.60 4.24
2240 3610 9.846248 ATGTACAATCTTACAAAAATTCAGCTC 57.154 29.630 0.00 0.00 35.60 4.09
2241 3611 8.296713 TGTACAATCTTACAAAAATTCAGCTCC 58.703 33.333 0.00 0.00 0.00 4.70
2242 3612 7.530426 ACAATCTTACAAAAATTCAGCTCCT 57.470 32.000 0.00 0.00 0.00 3.69
2243 3613 8.635765 ACAATCTTACAAAAATTCAGCTCCTA 57.364 30.769 0.00 0.00 0.00 2.94
2244 3614 9.077885 ACAATCTTACAAAAATTCAGCTCCTAA 57.922 29.630 0.00 0.00 0.00 2.69
2248 3618 9.295825 TCTTACAAAAATTCAGCTCCTAATTCA 57.704 29.630 0.00 0.00 0.00 2.57
2249 3619 9.912634 CTTACAAAAATTCAGCTCCTAATTCAA 57.087 29.630 0.00 0.00 0.00 2.69
2250 3620 9.691362 TTACAAAAATTCAGCTCCTAATTCAAC 57.309 29.630 0.00 0.00 0.00 3.18
2251 3621 7.955918 ACAAAAATTCAGCTCCTAATTCAACT 58.044 30.769 0.00 0.00 0.00 3.16
2252 3622 8.424133 ACAAAAATTCAGCTCCTAATTCAACTT 58.576 29.630 0.00 0.00 0.00 2.66
2253 3623 9.912634 CAAAAATTCAGCTCCTAATTCAACTTA 57.087 29.630 0.00 0.00 0.00 2.24
2254 3624 9.914131 AAAAATTCAGCTCCTAATTCAACTTAC 57.086 29.630 0.00 0.00 0.00 2.34
2255 3625 8.635765 AAATTCAGCTCCTAATTCAACTTACA 57.364 30.769 0.00 0.00 0.00 2.41
2256 3626 7.617041 ATTCAGCTCCTAATTCAACTTACAC 57.383 36.000 0.00 0.00 0.00 2.90
2257 3627 6.360370 TCAGCTCCTAATTCAACTTACACT 57.640 37.500 0.00 0.00 0.00 3.55
2258 3628 7.476540 TCAGCTCCTAATTCAACTTACACTA 57.523 36.000 0.00 0.00 0.00 2.74
2259 3629 7.903145 TCAGCTCCTAATTCAACTTACACTAA 58.097 34.615 0.00 0.00 0.00 2.24
2260 3630 8.540388 TCAGCTCCTAATTCAACTTACACTAAT 58.460 33.333 0.00 0.00 0.00 1.73
2261 3631 9.817809 CAGCTCCTAATTCAACTTACACTAATA 57.182 33.333 0.00 0.00 0.00 0.98
2291 3661 8.907222 AAAAGGCAAAATCAAATGTGAATAGT 57.093 26.923 0.00 0.00 37.30 2.12
2292 3662 7.894376 AAGGCAAAATCAAATGTGAATAGTG 57.106 32.000 0.00 0.00 37.30 2.74
2293 3663 6.996509 AGGCAAAATCAAATGTGAATAGTGT 58.003 32.000 0.00 0.00 37.30 3.55
2294 3664 7.444299 AGGCAAAATCAAATGTGAATAGTGTT 58.556 30.769 0.00 0.00 37.30 3.32
2295 3665 8.584157 AGGCAAAATCAAATGTGAATAGTGTTA 58.416 29.630 0.00 0.00 37.30 2.41
2296 3666 9.202273 GGCAAAATCAAATGTGAATAGTGTTAA 57.798 29.630 0.00 0.00 37.30 2.01
2314 3684 8.617290 AGTGTTAAAGTACTATTCACCCAAAG 57.383 34.615 0.00 0.00 0.00 2.77
2315 3685 7.174426 AGTGTTAAAGTACTATTCACCCAAAGC 59.826 37.037 0.00 0.00 0.00 3.51
2316 3686 7.174426 GTGTTAAAGTACTATTCACCCAAAGCT 59.826 37.037 0.00 0.00 0.00 3.74
2317 3687 7.174253 TGTTAAAGTACTATTCACCCAAAGCTG 59.826 37.037 0.00 0.00 0.00 4.24
2318 3688 3.610911 AGTACTATTCACCCAAAGCTGC 58.389 45.455 0.00 0.00 0.00 5.25
2319 3689 2.887151 ACTATTCACCCAAAGCTGCT 57.113 45.000 0.00 0.00 0.00 4.24
2320 3690 4.469945 AGTACTATTCACCCAAAGCTGCTA 59.530 41.667 0.90 0.00 0.00 3.49
2321 3691 3.610911 ACTATTCACCCAAAGCTGCTAC 58.389 45.455 0.90 0.00 0.00 3.58
2322 3692 2.887151 ATTCACCCAAAGCTGCTACT 57.113 45.000 0.90 0.00 0.00 2.57
2323 3693 4.469945 ACTATTCACCCAAAGCTGCTACTA 59.530 41.667 0.90 0.00 0.00 1.82
2324 3694 4.510167 ATTCACCCAAAGCTGCTACTAT 57.490 40.909 0.90 0.00 0.00 2.12
2325 3695 4.301072 TTCACCCAAAGCTGCTACTATT 57.699 40.909 0.90 0.00 0.00 1.73
2326 3696 4.301072 TCACCCAAAGCTGCTACTATTT 57.699 40.909 0.90 0.00 0.00 1.40
2327 3697 5.429681 TCACCCAAAGCTGCTACTATTTA 57.570 39.130 0.90 0.00 0.00 1.40
2328 3698 5.183228 TCACCCAAAGCTGCTACTATTTAC 58.817 41.667 0.90 0.00 0.00 2.01
2329 3699 4.941263 CACCCAAAGCTGCTACTATTTACA 59.059 41.667 0.90 0.00 0.00 2.41
2330 3700 5.590259 CACCCAAAGCTGCTACTATTTACAT 59.410 40.000 0.90 0.00 0.00 2.29
2331 3701 6.095440 CACCCAAAGCTGCTACTATTTACATT 59.905 38.462 0.90 0.00 0.00 2.71
2332 3702 6.318900 ACCCAAAGCTGCTACTATTTACATTC 59.681 38.462 0.90 0.00 0.00 2.67
2333 3703 6.422223 CCAAAGCTGCTACTATTTACATTCG 58.578 40.000 0.90 0.00 0.00 3.34
2334 3704 6.257849 CCAAAGCTGCTACTATTTACATTCGA 59.742 38.462 0.90 0.00 0.00 3.71
2335 3705 7.201609 CCAAAGCTGCTACTATTTACATTCGAA 60.202 37.037 0.90 0.00 0.00 3.71
2336 3706 8.338259 CAAAGCTGCTACTATTTACATTCGAAT 58.662 33.333 4.39 4.39 0.00 3.34
2337 3707 8.438676 AAGCTGCTACTATTTACATTCGAATT 57.561 30.769 8.21 3.14 0.00 2.17
2338 3708 8.438676 AGCTGCTACTATTTACATTCGAATTT 57.561 30.769 8.21 4.78 0.00 1.82
2339 3709 8.338259 AGCTGCTACTATTTACATTCGAATTTG 58.662 33.333 8.21 2.13 0.00 2.32
2340 3710 8.122952 GCTGCTACTATTTACATTCGAATTTGT 58.877 33.333 8.21 8.81 0.00 2.83
2341 3711 9.988350 CTGCTACTATTTACATTCGAATTTGTT 57.012 29.630 8.21 0.00 0.00 2.83
2372 3742 7.807687 TCTATAAACGTACTGAGTTTTGAGC 57.192 36.000 0.00 0.00 41.44 4.26
2373 3743 7.600065 TCTATAAACGTACTGAGTTTTGAGCT 58.400 34.615 0.00 0.00 41.44 4.09
2374 3744 4.795970 AAACGTACTGAGTTTTGAGCTG 57.204 40.909 0.00 0.00 38.51 4.24
2375 3745 3.728076 ACGTACTGAGTTTTGAGCTGA 57.272 42.857 0.00 0.00 0.00 4.26
2376 3746 4.258702 ACGTACTGAGTTTTGAGCTGAT 57.741 40.909 0.00 0.00 0.00 2.90
2377 3747 4.632153 ACGTACTGAGTTTTGAGCTGATT 58.368 39.130 0.00 0.00 0.00 2.57
2378 3748 5.057149 ACGTACTGAGTTTTGAGCTGATTT 58.943 37.500 0.00 0.00 0.00 2.17
2379 3749 5.527582 ACGTACTGAGTTTTGAGCTGATTTT 59.472 36.000 0.00 0.00 0.00 1.82
2380 3750 6.038271 ACGTACTGAGTTTTGAGCTGATTTTT 59.962 34.615 0.00 0.00 0.00 1.94
2401 3771 6.585695 TTTTTCGGATCTGTAGACACTACT 57.414 37.500 0.42 0.00 0.00 2.57
2402 3772 7.692460 TTTTTCGGATCTGTAGACACTACTA 57.308 36.000 0.42 0.42 0.00 1.82
2403 3773 6.922247 TTTCGGATCTGTAGACACTACTAG 57.078 41.667 0.42 0.00 0.00 2.57
2404 3774 5.866159 TCGGATCTGTAGACACTACTAGA 57.134 43.478 0.42 10.30 0.00 2.43
2405 3775 6.231258 TCGGATCTGTAGACACTACTAGAA 57.769 41.667 0.42 0.00 0.00 2.10
2406 3776 6.828788 TCGGATCTGTAGACACTACTAGAAT 58.171 40.000 0.42 0.30 0.00 2.40
2407 3777 6.930164 TCGGATCTGTAGACACTACTAGAATC 59.070 42.308 0.42 7.31 0.00 2.52
2408 3778 6.932400 CGGATCTGTAGACACTACTAGAATCT 59.068 42.308 0.00 0.00 0.00 2.40
2409 3779 7.095397 CGGATCTGTAGACACTACTAGAATCTG 60.095 44.444 0.00 8.24 0.00 2.90
2410 3780 7.174253 GGATCTGTAGACACTACTAGAATCTGG 59.826 44.444 0.00 0.00 0.00 3.86
2411 3781 5.823570 TCTGTAGACACTACTAGAATCTGGC 59.176 44.000 0.00 0.00 0.00 4.85
2412 3782 5.506708 TGTAGACACTACTAGAATCTGGCA 58.493 41.667 0.00 0.00 0.00 4.92
2413 3783 5.949952 TGTAGACACTACTAGAATCTGGCAA 59.050 40.000 0.00 0.00 0.00 4.52
2414 3784 6.607600 TGTAGACACTACTAGAATCTGGCAAT 59.392 38.462 0.00 0.00 0.00 3.56
2415 3785 6.552445 AGACACTACTAGAATCTGGCAATT 57.448 37.500 0.00 0.00 0.00 2.32
2416 3786 6.951971 AGACACTACTAGAATCTGGCAATTT 58.048 36.000 0.00 0.00 0.00 1.82
2417 3787 6.820656 AGACACTACTAGAATCTGGCAATTTG 59.179 38.462 0.00 0.00 0.00 2.32
2418 3788 5.355350 ACACTACTAGAATCTGGCAATTTGC 59.645 40.000 13.04 13.04 44.08 3.68
2427 3797 2.650196 GCAATTTGCCGTCTGCCA 59.350 55.556 10.34 0.00 37.42 4.92
2428 3798 1.734117 GCAATTTGCCGTCTGCCAC 60.734 57.895 10.34 0.00 37.42 5.01
2429 3799 1.080569 CAATTTGCCGTCTGCCACC 60.081 57.895 0.00 0.00 40.16 4.61
2430 3800 1.228552 AATTTGCCGTCTGCCACCT 60.229 52.632 0.00 0.00 40.16 4.00
2431 3801 1.244019 AATTTGCCGTCTGCCACCTC 61.244 55.000 0.00 0.00 40.16 3.85
2432 3802 2.129555 ATTTGCCGTCTGCCACCTCT 62.130 55.000 0.00 0.00 40.16 3.69
2433 3803 2.337879 TTTGCCGTCTGCCACCTCTT 62.338 55.000 0.00 0.00 40.16 2.85
2434 3804 2.032681 GCCGTCTGCCACCTCTTT 59.967 61.111 0.00 0.00 0.00 2.52
2435 3805 2.328099 GCCGTCTGCCACCTCTTTG 61.328 63.158 0.00 0.00 0.00 2.77
2436 3806 2.328099 CCGTCTGCCACCTCTTTGC 61.328 63.158 0.00 0.00 0.00 3.68
2437 3807 2.328099 CGTCTGCCACCTCTTTGCC 61.328 63.158 0.00 0.00 0.00 4.52
2438 3808 2.032528 TCTGCCACCTCTTTGCCG 59.967 61.111 0.00 0.00 0.00 5.69
2439 3809 2.281761 CTGCCACCTCTTTGCCGT 60.282 61.111 0.00 0.00 0.00 5.68
2440 3810 2.281484 TGCCACCTCTTTGCCGTC 60.281 61.111 0.00 0.00 0.00 4.79
2441 3811 3.056328 GCCACCTCTTTGCCGTCC 61.056 66.667 0.00 0.00 0.00 4.79
2442 3812 2.742372 CCACCTCTTTGCCGTCCG 60.742 66.667 0.00 0.00 0.00 4.79
2443 3813 3.423154 CACCTCTTTGCCGTCCGC 61.423 66.667 0.00 0.00 38.31 5.54
2444 3814 4.699522 ACCTCTTTGCCGTCCGCC 62.700 66.667 0.00 0.00 36.24 6.13
2445 3815 4.697756 CCTCTTTGCCGTCCGCCA 62.698 66.667 0.00 0.00 36.24 5.69
2446 3816 3.121030 CTCTTTGCCGTCCGCCAG 61.121 66.667 0.00 0.00 36.24 4.85
2460 3830 3.571119 CCAGCTGACGGCAAAGAG 58.429 61.111 17.39 0.00 44.79 2.85
2461 3831 2.684843 CCAGCTGACGGCAAAGAGC 61.685 63.158 17.39 0.00 44.79 4.09
2470 3840 3.282271 GCAAAGAGCCTCCTTGCC 58.718 61.111 15.68 0.18 37.23 4.52
2471 3841 2.694760 GCAAAGAGCCTCCTTGCCG 61.695 63.158 15.68 0.00 37.23 5.69
2472 3842 1.302832 CAAAGAGCCTCCTTGCCGT 60.303 57.895 0.00 0.00 0.00 5.68
2473 3843 0.890996 CAAAGAGCCTCCTTGCCGTT 60.891 55.000 0.00 0.00 0.00 4.44
2474 3844 0.606673 AAAGAGCCTCCTTGCCGTTC 60.607 55.000 0.00 0.00 0.00 3.95
2475 3845 2.788191 AAGAGCCTCCTTGCCGTTCG 62.788 60.000 0.00 0.00 0.00 3.95
2478 3848 2.358737 CCTCCTTGCCGTTCGCTT 60.359 61.111 0.00 0.00 38.78 4.68
2479 3849 2.391389 CCTCCTTGCCGTTCGCTTC 61.391 63.158 0.00 0.00 38.78 3.86
2480 3850 2.358247 TCCTTGCCGTTCGCTTCC 60.358 61.111 0.00 0.00 38.78 3.46
2481 3851 2.668212 CCTTGCCGTTCGCTTCCA 60.668 61.111 0.00 0.00 38.78 3.53
2482 3852 2.556287 CTTGCCGTTCGCTTCCAC 59.444 61.111 0.00 0.00 38.78 4.02
2483 3853 2.203084 TTGCCGTTCGCTTCCACA 60.203 55.556 0.00 0.00 38.78 4.17
2484 3854 1.781025 CTTGCCGTTCGCTTCCACAA 61.781 55.000 0.00 0.00 38.78 3.33
2485 3855 1.377366 TTGCCGTTCGCTTCCACAAA 61.377 50.000 0.00 0.00 38.78 2.83
2486 3856 1.082104 GCCGTTCGCTTCCACAAAG 60.082 57.895 0.00 0.00 38.08 2.77
2493 3863 3.253955 CTTCCACAAAGCGGACGG 58.746 61.111 0.00 0.00 30.29 4.79
2494 3864 2.966309 CTTCCACAAAGCGGACGGC 61.966 63.158 0.00 0.00 44.05 5.68
2503 3873 3.340789 GCGGACGGCAAAGAAAGT 58.659 55.556 0.00 0.00 42.87 2.66
2504 3874 1.082104 GCGGACGGCAAAGAAAGTG 60.082 57.895 0.00 0.00 42.87 3.16
2505 3875 1.082104 CGGACGGCAAAGAAAGTGC 60.082 57.895 0.00 0.00 41.45 4.40
2506 3876 1.781025 CGGACGGCAAAGAAAGTGCA 61.781 55.000 0.00 0.00 44.07 4.57
2507 3877 0.383949 GGACGGCAAAGAAAGTGCAA 59.616 50.000 0.00 0.00 44.07 4.08
2508 3878 1.202359 GGACGGCAAAGAAAGTGCAAA 60.202 47.619 0.00 0.00 44.07 3.68
2509 3879 2.545742 GGACGGCAAAGAAAGTGCAAAT 60.546 45.455 0.00 0.00 44.07 2.32
2510 3880 2.472488 GACGGCAAAGAAAGTGCAAATG 59.528 45.455 0.00 0.00 44.07 2.32
2511 3881 1.794116 CGGCAAAGAAAGTGCAAATGG 59.206 47.619 0.00 0.00 44.07 3.16
2512 3882 1.532437 GGCAAAGAAAGTGCAAATGGC 59.468 47.619 0.00 0.00 44.07 4.40
2527 3897 6.783892 GCAAATGGCAAAAAGTCTATTTGA 57.216 33.333 12.89 0.00 43.97 2.69
2528 3898 7.188468 GCAAATGGCAAAAAGTCTATTTGAA 57.812 32.000 12.89 0.00 43.97 2.69
2529 3899 7.293018 GCAAATGGCAAAAAGTCTATTTGAAG 58.707 34.615 12.89 0.00 43.97 3.02
2530 3900 7.571798 GCAAATGGCAAAAAGTCTATTTGAAGG 60.572 37.037 12.89 0.00 43.97 3.46
2531 3901 6.670695 ATGGCAAAAAGTCTATTTGAAGGT 57.329 33.333 0.00 0.00 39.56 3.50
2532 3902 7.775053 ATGGCAAAAAGTCTATTTGAAGGTA 57.225 32.000 0.00 0.00 39.56 3.08
2533 3903 7.214467 TGGCAAAAAGTCTATTTGAAGGTAG 57.786 36.000 3.37 0.00 39.56 3.18
2534 3904 7.001674 TGGCAAAAAGTCTATTTGAAGGTAGA 58.998 34.615 3.37 0.00 39.56 2.59
2535 3905 7.040686 TGGCAAAAAGTCTATTTGAAGGTAGAC 60.041 37.037 10.15 10.15 44.47 2.59
2539 3909 4.119442 GTCTATTTGAAGGTAGACGGCA 57.881 45.455 0.00 0.00 37.96 5.69
2540 3910 4.501071 GTCTATTTGAAGGTAGACGGCAA 58.499 43.478 0.00 0.00 37.96 4.52
2541 3911 4.933400 GTCTATTTGAAGGTAGACGGCAAA 59.067 41.667 0.00 0.00 37.96 3.68
2542 3912 5.063564 GTCTATTTGAAGGTAGACGGCAAAG 59.936 44.000 0.00 0.00 37.96 2.77
2543 3913 2.178912 TTGAAGGTAGACGGCAAAGG 57.821 50.000 0.00 0.00 0.00 3.11
2544 3914 0.323629 TGAAGGTAGACGGCAAAGGG 59.676 55.000 0.00 0.00 0.00 3.95
2545 3915 1.002502 AAGGTAGACGGCAAAGGGC 60.003 57.895 0.00 0.00 43.74 5.19
2581 3951 4.063967 CACGGCGTGGCTAGGTCA 62.064 66.667 31.19 0.00 0.00 4.02
2582 3952 3.760035 ACGGCGTGGCTAGGTCAG 61.760 66.667 13.76 0.00 0.00 3.51
2583 3953 4.514577 CGGCGTGGCTAGGTCAGG 62.515 72.222 0.00 0.00 0.00 3.86
2584 3954 3.391382 GGCGTGGCTAGGTCAGGT 61.391 66.667 0.00 0.00 0.00 4.00
2585 3955 2.663196 GCGTGGCTAGGTCAGGTT 59.337 61.111 0.00 0.00 0.00 3.50
2586 3956 1.448013 GCGTGGCTAGGTCAGGTTC 60.448 63.158 0.00 0.00 0.00 3.62
2587 3957 1.889530 GCGTGGCTAGGTCAGGTTCT 61.890 60.000 0.00 0.00 0.00 3.01
2588 3958 0.608640 CGTGGCTAGGTCAGGTTCTT 59.391 55.000 0.00 0.00 0.00 2.52
2589 3959 1.002087 CGTGGCTAGGTCAGGTTCTTT 59.998 52.381 0.00 0.00 0.00 2.52
2590 3960 2.427506 GTGGCTAGGTCAGGTTCTTTG 58.572 52.381 0.00 0.00 0.00 2.77
2591 3961 1.271379 TGGCTAGGTCAGGTTCTTTGC 60.271 52.381 0.00 0.00 0.00 3.68
2592 3962 1.454201 GCTAGGTCAGGTTCTTTGCC 58.546 55.000 0.00 0.00 0.00 4.52
2593 3963 1.726853 CTAGGTCAGGTTCTTTGCCG 58.273 55.000 0.00 0.00 0.00 5.69
2594 3964 1.002087 CTAGGTCAGGTTCTTTGCCGT 59.998 52.381 0.00 0.00 0.00 5.68
2595 3965 0.250338 AGGTCAGGTTCTTTGCCGTC 60.250 55.000 0.00 0.00 0.00 4.79
2596 3966 1.235281 GGTCAGGTTCTTTGCCGTCC 61.235 60.000 0.00 0.00 0.00 4.79
2597 3967 1.301401 TCAGGTTCTTTGCCGTCCG 60.301 57.895 0.00 0.00 0.00 4.79
2598 3968 2.668550 AGGTTCTTTGCCGTCCGC 60.669 61.111 0.00 0.00 38.31 5.54
2599 3969 3.733960 GGTTCTTTGCCGTCCGCC 61.734 66.667 0.00 0.00 36.24 6.13
2600 3970 2.975799 GTTCTTTGCCGTCCGCCA 60.976 61.111 0.00 0.00 36.24 5.69
2601 3971 2.668212 TTCTTTGCCGTCCGCCAG 60.668 61.111 0.00 0.00 36.24 4.85
2618 3988 2.815647 GCGGACGGCAAAGAGGAG 60.816 66.667 0.00 0.00 42.87 3.69
2619 3989 2.970639 CGGACGGCAAAGAGGAGA 59.029 61.111 0.00 0.00 0.00 3.71
2620 3990 1.446272 CGGACGGCAAAGAGGAGAC 60.446 63.158 0.00 0.00 0.00 3.36
2621 3991 1.446272 GGACGGCAAAGAGGAGACG 60.446 63.158 0.00 0.00 0.00 4.18
2622 3992 1.289380 GACGGCAAAGAGGAGACGT 59.711 57.895 0.00 0.00 37.26 4.34
2623 3993 1.006102 ACGGCAAAGAGGAGACGTG 60.006 57.895 0.00 0.00 32.90 4.49
2624 3994 1.738099 CGGCAAAGAGGAGACGTGG 60.738 63.158 0.00 0.00 0.00 4.94
2625 3995 1.376037 GGCAAAGAGGAGACGTGGG 60.376 63.158 0.00 0.00 0.00 4.61
2626 3996 2.035442 GCAAAGAGGAGACGTGGGC 61.035 63.158 0.00 0.00 0.00 5.36
2627 3997 1.376037 CAAAGAGGAGACGTGGGCC 60.376 63.158 0.00 0.00 0.00 5.80
2628 3998 1.841556 AAAGAGGAGACGTGGGCCA 60.842 57.895 0.00 0.00 0.00 5.36
2629 3999 1.831652 AAAGAGGAGACGTGGGCCAG 61.832 60.000 6.40 3.61 0.00 4.85
2630 4000 4.459089 GAGGAGACGTGGGCCAGC 62.459 72.222 6.40 0.45 0.00 4.85
2646 4016 4.468689 GCCCTAAACGGCCGCTCT 62.469 66.667 28.58 12.68 43.66 4.09
2647 4017 2.202892 CCCTAAACGGCCGCTCTC 60.203 66.667 28.58 0.00 0.00 3.20
2648 4018 2.722201 CCCTAAACGGCCGCTCTCT 61.722 63.158 28.58 0.81 0.00 3.10
2649 4019 1.218316 CCTAAACGGCCGCTCTCTT 59.782 57.895 28.58 8.93 0.00 2.85
2650 4020 0.391263 CCTAAACGGCCGCTCTCTTT 60.391 55.000 28.58 20.02 0.00 2.52
2651 4021 0.721718 CTAAACGGCCGCTCTCTTTG 59.278 55.000 28.58 8.21 0.00 2.77
2652 4022 1.296056 TAAACGGCCGCTCTCTTTGC 61.296 55.000 28.58 0.00 0.00 3.68
2656 4026 3.491652 GCCGCTCTCTTTGCCGTC 61.492 66.667 0.00 0.00 0.00 4.79
2657 4027 2.262915 CCGCTCTCTTTGCCGTCT 59.737 61.111 0.00 0.00 0.00 4.18
2658 4028 2.097038 CCGCTCTCTTTGCCGTCTG 61.097 63.158 0.00 0.00 0.00 3.51
2659 4029 2.734673 CGCTCTCTTTGCCGTCTGC 61.735 63.158 0.00 0.00 41.77 4.26
2660 4030 1.375268 GCTCTCTTTGCCGTCTGCT 60.375 57.895 0.00 0.00 42.00 4.24
2661 4031 0.108615 GCTCTCTTTGCCGTCTGCTA 60.109 55.000 0.00 0.00 42.00 3.49
2662 4032 1.919918 CTCTCTTTGCCGTCTGCTAG 58.080 55.000 0.00 0.00 42.00 3.42
2663 4033 0.108615 TCTCTTTGCCGTCTGCTAGC 60.109 55.000 8.10 8.10 42.00 3.42
2664 4034 0.390340 CTCTTTGCCGTCTGCTAGCA 60.390 55.000 18.22 18.22 42.00 3.49
2665 4035 0.390340 TCTTTGCCGTCTGCTAGCAG 60.390 55.000 34.48 34.48 44.86 4.24
2674 4044 2.354109 TCTGCTAGCAGACGACAAAG 57.646 50.000 37.64 15.06 46.80 2.77
2675 4045 1.886542 TCTGCTAGCAGACGACAAAGA 59.113 47.619 37.64 17.11 46.80 2.52
2676 4046 2.296190 TCTGCTAGCAGACGACAAAGAA 59.704 45.455 37.64 16.20 46.80 2.52
2677 4047 2.665537 CTGCTAGCAGACGACAAAGAAG 59.334 50.000 36.47 8.12 46.30 2.85
2678 4048 1.996191 GCTAGCAGACGACAAAGAAGG 59.004 52.381 10.63 0.00 0.00 3.46
2679 4049 1.996191 CTAGCAGACGACAAAGAAGGC 59.004 52.381 0.00 0.00 0.00 4.35
2680 4050 0.603975 AGCAGACGACAAAGAAGGCC 60.604 55.000 0.00 0.00 0.00 5.19
2681 4051 1.578206 GCAGACGACAAAGAAGGCCC 61.578 60.000 0.00 0.00 0.00 5.80
2682 4052 0.250295 CAGACGACAAAGAAGGCCCA 60.250 55.000 0.00 0.00 0.00 5.36
2683 4053 0.250338 AGACGACAAAGAAGGCCCAC 60.250 55.000 0.00 0.00 0.00 4.61
2684 4054 0.250338 GACGACAAAGAAGGCCCACT 60.250 55.000 0.00 0.00 0.00 4.00
2685 4055 0.182775 ACGACAAAGAAGGCCCACTT 59.817 50.000 0.00 2.04 43.65 3.16
2686 4056 1.418637 ACGACAAAGAAGGCCCACTTA 59.581 47.619 11.58 0.00 40.21 2.24
2687 4057 2.158726 ACGACAAAGAAGGCCCACTTAA 60.159 45.455 11.58 0.00 40.21 1.85
2688 4058 3.081804 CGACAAAGAAGGCCCACTTAAT 58.918 45.455 11.58 4.37 40.21 1.40
2689 4059 3.119849 CGACAAAGAAGGCCCACTTAATG 60.120 47.826 11.58 9.95 40.21 1.90
2697 4067 3.827634 CCACTTAATGGGCCGAGC 58.172 61.111 0.00 0.00 45.95 5.03
2714 4084 4.150454 CCGGCTCCCCCTCTCTCT 62.150 72.222 0.00 0.00 0.00 3.10
2715 4085 2.042435 CGGCTCCCCCTCTCTCTT 60.042 66.667 0.00 0.00 0.00 2.85
2716 4086 1.687493 CGGCTCCCCCTCTCTCTTT 60.687 63.158 0.00 0.00 0.00 2.52
2717 4087 1.681486 CGGCTCCCCCTCTCTCTTTC 61.681 65.000 0.00 0.00 0.00 2.62
2718 4088 0.326143 GGCTCCCCCTCTCTCTTTCT 60.326 60.000 0.00 0.00 0.00 2.52
2719 4089 1.119684 GCTCCCCCTCTCTCTTTCTC 58.880 60.000 0.00 0.00 0.00 2.87
2720 4090 1.342975 GCTCCCCCTCTCTCTTTCTCT 60.343 57.143 0.00 0.00 0.00 3.10
2721 4091 2.387757 CTCCCCCTCTCTCTTTCTCTG 58.612 57.143 0.00 0.00 0.00 3.35
2722 4092 1.719378 TCCCCCTCTCTCTTTCTCTGT 59.281 52.381 0.00 0.00 0.00 3.41
2723 4093 2.107366 CCCCCTCTCTCTTTCTCTGTC 58.893 57.143 0.00 0.00 0.00 3.51
2724 4094 2.292192 CCCCCTCTCTCTTTCTCTGTCT 60.292 54.545 0.00 0.00 0.00 3.41
2725 4095 3.023832 CCCCTCTCTCTTTCTCTGTCTC 58.976 54.545 0.00 0.00 0.00 3.36
2726 4096 3.023832 CCCTCTCTCTTTCTCTGTCTCC 58.976 54.545 0.00 0.00 0.00 3.71
2727 4097 3.023832 CCTCTCTCTTTCTCTGTCTCCC 58.976 54.545 0.00 0.00 0.00 4.30
2728 4098 3.309121 CCTCTCTCTTTCTCTGTCTCCCT 60.309 52.174 0.00 0.00 0.00 4.20
2729 4099 3.947834 CTCTCTCTTTCTCTGTCTCCCTC 59.052 52.174 0.00 0.00 0.00 4.30
2730 4100 3.023832 CTCTCTTTCTCTGTCTCCCTCC 58.976 54.545 0.00 0.00 0.00 4.30
2731 4101 2.107366 CTCTTTCTCTGTCTCCCTCCC 58.893 57.143 0.00 0.00 0.00 4.30
2732 4102 1.433199 TCTTTCTCTGTCTCCCTCCCA 59.567 52.381 0.00 0.00 0.00 4.37
2733 4103 1.552792 CTTTCTCTGTCTCCCTCCCAC 59.447 57.143 0.00 0.00 0.00 4.61
2734 4104 0.612174 TTCTCTGTCTCCCTCCCACG 60.612 60.000 0.00 0.00 0.00 4.94
2735 4105 2.680352 TCTGTCTCCCTCCCACGC 60.680 66.667 0.00 0.00 0.00 5.34
2736 4106 4.135153 CTGTCTCCCTCCCACGCG 62.135 72.222 3.53 3.53 0.00 6.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 4.265206 CCTGCAGGGGCTTATTGG 57.735 61.111 26.14 0.00 41.91 3.16
49 50 2.651701 CTATGTGTCATACGACGGCTC 58.348 52.381 0.00 0.00 45.80 4.70
56 57 2.536365 ACAACGGCTATGTGTCATACG 58.464 47.619 0.00 0.00 0.00 3.06
101 110 6.088217 GCCTCAAAATTAAAGTTTCTTCGCTC 59.912 38.462 0.00 0.00 0.00 5.03
121 130 2.058593 TAGCGAGATTGAGAGCCTCA 57.941 50.000 0.00 1.25 38.87 3.86
125 134 3.242252 GCAAACTTAGCGAGATTGAGAGC 60.242 47.826 14.26 0.00 39.71 4.09
142 151 7.242914 ACTTATGCCTAAGTTATACGCAAAC 57.757 36.000 8.44 0.00 44.07 2.93
172 181 9.515226 GGGTCATGAGCAATACCTAATAAAATA 57.485 33.333 25.18 0.00 32.38 1.40
173 182 8.004215 TGGGTCATGAGCAATACCTAATAAAAT 58.996 33.333 25.18 0.00 32.38 1.82
174 183 7.350382 TGGGTCATGAGCAATACCTAATAAAA 58.650 34.615 25.18 0.00 32.38 1.52
175 184 6.905736 TGGGTCATGAGCAATACCTAATAAA 58.094 36.000 25.18 0.00 32.38 1.40
176 185 6.508030 TGGGTCATGAGCAATACCTAATAA 57.492 37.500 25.18 0.00 32.38 1.40
177 186 6.508030 TTGGGTCATGAGCAATACCTAATA 57.492 37.500 25.18 0.00 28.74 0.98
178 187 5.387113 TTGGGTCATGAGCAATACCTAAT 57.613 39.130 25.18 0.00 28.74 1.73
179 188 4.853468 TTGGGTCATGAGCAATACCTAA 57.147 40.909 25.18 10.10 30.96 2.69
180 189 4.717877 CATTGGGTCATGAGCAATACCTA 58.282 43.478 25.18 4.12 32.38 3.08
181 190 3.559069 CATTGGGTCATGAGCAATACCT 58.441 45.455 25.18 2.05 32.38 3.08
182 191 2.035066 GCATTGGGTCATGAGCAATACC 59.965 50.000 25.18 8.76 0.00 2.73
183 192 2.954318 AGCATTGGGTCATGAGCAATAC 59.046 45.455 25.18 16.23 0.00 1.89
184 193 3.301794 AGCATTGGGTCATGAGCAATA 57.698 42.857 25.18 10.71 0.00 1.90
185 194 2.154567 AGCATTGGGTCATGAGCAAT 57.845 45.000 25.18 18.40 0.00 3.56
186 195 1.546923 CAAGCATTGGGTCATGAGCAA 59.453 47.619 25.18 12.90 43.94 3.91
187 196 1.179152 CAAGCATTGGGTCATGAGCA 58.821 50.000 25.18 7.31 43.94 4.26
228 239 9.367160 CCCAATAGGAAATACCACTTTATTGAT 57.633 33.333 0.00 0.00 42.04 2.57
230 241 7.433680 GCCCAATAGGAAATACCACTTTATTG 58.566 38.462 0.00 0.00 42.04 1.90
695 778 1.262640 ACTAACGTACTGCCCCCAGG 61.263 60.000 0.00 0.00 43.53 4.45
706 798 3.773404 GGCCGGCCCACTAACGTA 61.773 66.667 36.64 0.00 0.00 3.57
746 843 3.623330 CGCCCGTTAACGATCCGC 61.623 66.667 28.79 20.61 43.02 5.54
776 874 4.713792 ACTTTATTGGGGAGCTCCTATG 57.286 45.455 31.36 14.93 35.95 2.23
817 915 1.539827 CAGTCTTTCGGCCGGATTTTT 59.460 47.619 27.83 4.66 0.00 1.94
818 916 1.165270 CAGTCTTTCGGCCGGATTTT 58.835 50.000 27.83 4.07 0.00 1.82
819 917 0.323629 TCAGTCTTTCGGCCGGATTT 59.676 50.000 27.83 4.73 0.00 2.17
820 918 0.391263 GTCAGTCTTTCGGCCGGATT 60.391 55.000 27.83 8.84 0.00 3.01
821 919 1.218316 GTCAGTCTTTCGGCCGGAT 59.782 57.895 27.83 0.00 0.00 4.18
822 920 2.654877 GTCAGTCTTTCGGCCGGA 59.345 61.111 27.83 16.16 0.00 5.14
845 943 4.996434 GCATCCGGCTCCGATGGG 62.996 72.222 10.28 0.00 42.83 4.00
997 1095 4.794439 CACTCCGCACGGCATCGA 62.794 66.667 3.66 0.00 40.11 3.59
999 1097 3.490759 CACACTCCGCACGGCATC 61.491 66.667 3.66 0.00 34.68 3.91
1205 1303 2.163613 GACCCCGCAAAGAAAATCGATT 59.836 45.455 4.39 4.39 0.00 3.34
1249 1347 4.644103 AATCTACGTTGCGTACAGGTAT 57.356 40.909 0.00 0.00 41.54 2.73
1268 1366 5.772825 AAACTGATGCCGCATGTATAAAT 57.227 34.783 11.49 0.00 0.00 1.40
1284 1475 4.685169 GATGGCAATCGAAGAAAACTGA 57.315 40.909 0.00 0.00 43.58 3.41
1351 1550 7.535489 AACTGCGTCACCTTATTTAATCTAC 57.465 36.000 0.00 0.00 0.00 2.59
1352 1551 8.556213 AAAACTGCGTCACCTTATTTAATCTA 57.444 30.769 0.00 0.00 0.00 1.98
1353 1552 7.361799 GGAAAACTGCGTCACCTTATTTAATCT 60.362 37.037 0.00 0.00 0.00 2.40
1357 1556 4.456566 GGGAAAACTGCGTCACCTTATTTA 59.543 41.667 0.00 0.00 0.00 1.40
1573 2941 5.046448 TGCAGGCAATTGGAATGAAATTACT 60.046 36.000 7.72 0.00 38.26 2.24
1613 2981 0.887933 CCAGCAAATACACCCACACC 59.112 55.000 0.00 0.00 0.00 4.16
1698 3066 2.169769 TCACCGGTAAGGCCATAAGAAG 59.830 50.000 6.87 0.00 46.52 2.85
1730 3098 4.395854 TGCTCACACATGGCAGTAATTAAG 59.604 41.667 0.00 0.00 31.12 1.85
1779 3147 9.964303 AGAGAATGCTTCGCTATATCAATATAG 57.036 33.333 11.20 11.20 43.16 1.31
1816 3184 2.442878 CCAACATGAGGGGATGGTATCA 59.557 50.000 0.00 0.00 0.00 2.15
1819 3187 0.550914 GCCAACATGAGGGGATGGTA 59.449 55.000 0.00 0.00 33.63 3.25
1834 3202 2.884012 CAGTACCAAACATGTCAGCCAA 59.116 45.455 0.00 0.00 0.00 4.52
1836 3204 2.504367 ACAGTACCAAACATGTCAGCC 58.496 47.619 0.00 0.00 0.00 4.85
1846 3214 9.550406 GTACTATATGCCAATAACAGTACCAAA 57.450 33.333 0.00 0.00 33.80 3.28
1867 3235 3.832490 AGGACAGCACATGACAAGTACTA 59.168 43.478 0.00 0.00 0.00 1.82
1877 3247 3.141398 ACACAAAGTAGGACAGCACATG 58.859 45.455 0.00 0.00 0.00 3.21
1891 3261 7.194607 TCAGAGCTCTAAAAATGACACAAAG 57.805 36.000 17.75 0.00 0.00 2.77
1898 3268 6.980978 CGTATTCCTCAGAGCTCTAAAAATGA 59.019 38.462 17.75 8.43 0.00 2.57
1905 3275 3.628032 CACACGTATTCCTCAGAGCTCTA 59.372 47.826 17.75 0.00 0.00 2.43
1915 3285 5.864418 TTATAAGGCTCACACGTATTCCT 57.136 39.130 0.00 0.00 0.00 3.36
1918 3288 5.121105 GGGTTTATAAGGCTCACACGTATT 58.879 41.667 0.00 0.00 0.00 1.89
1919 3289 4.700700 GGGTTTATAAGGCTCACACGTAT 58.299 43.478 0.00 0.00 0.00 3.06
1921 3291 2.675889 CGGGTTTATAAGGCTCACACGT 60.676 50.000 1.56 0.00 29.51 4.49
1922 3292 1.931172 CGGGTTTATAAGGCTCACACG 59.069 52.381 0.00 0.00 0.00 4.49
1923 3293 3.255969 TCGGGTTTATAAGGCTCACAC 57.744 47.619 0.00 0.00 0.00 3.82
1924 3294 3.985019 TTCGGGTTTATAAGGCTCACA 57.015 42.857 0.00 0.00 0.00 3.58
1925 3295 3.063045 CGTTTCGGGTTTATAAGGCTCAC 59.937 47.826 0.00 0.00 0.00 3.51
1926 3296 3.055963 TCGTTTCGGGTTTATAAGGCTCA 60.056 43.478 0.00 0.00 0.00 4.26
1927 3297 3.524541 TCGTTTCGGGTTTATAAGGCTC 58.475 45.455 0.00 0.00 0.00 4.70
1928 3298 3.196254 TCTCGTTTCGGGTTTATAAGGCT 59.804 43.478 0.00 0.00 0.00 4.58
1929 3299 3.524541 TCTCGTTTCGGGTTTATAAGGC 58.475 45.455 0.00 0.00 0.00 4.35
1930 3300 5.002464 TCTCTCGTTTCGGGTTTATAAGG 57.998 43.478 0.00 0.00 0.00 2.69
1931 3301 5.050972 GCATCTCTCGTTTCGGGTTTATAAG 60.051 44.000 0.00 0.00 0.00 1.73
1941 3311 1.189403 GTACGGCATCTCTCGTTTCG 58.811 55.000 0.00 0.00 40.31 3.46
1967 3337 5.195001 ACACCAACATACAACATTGGAAC 57.805 39.130 9.15 0.00 44.84 3.62
1978 3348 7.448748 AGATAGGAAAACAACACCAACATAC 57.551 36.000 0.00 0.00 0.00 2.39
1979 3349 9.173021 CATAGATAGGAAAACAACACCAACATA 57.827 33.333 0.00 0.00 0.00 2.29
1982 3352 7.681939 TCATAGATAGGAAAACAACACCAAC 57.318 36.000 0.00 0.00 0.00 3.77
1996 3366 8.072321 ACAGGCATGTAGTATTCATAGATAGG 57.928 38.462 0.06 0.00 38.09 2.57
2012 3382 7.690301 GCCCAGCTATATATATAACAGGCATGT 60.690 40.741 21.17 0.00 43.15 3.21
2013 3383 6.652481 GCCCAGCTATATATATAACAGGCATG 59.348 42.308 21.17 0.00 31.59 4.06
2015 3385 5.665360 TGCCCAGCTATATATATAACAGGCA 59.335 40.000 23.14 23.14 35.46 4.75
2030 3400 6.945218 ACAAAATTGATTTATTGCCCAGCTA 58.055 32.000 0.00 0.00 0.00 3.32
2031 3401 5.807909 ACAAAATTGATTTATTGCCCAGCT 58.192 33.333 0.00 0.00 0.00 4.24
2032 3402 6.316319 CAACAAAATTGATTTATTGCCCAGC 58.684 36.000 0.00 0.00 0.00 4.85
2033 3403 6.072618 TGCAACAAAATTGATTTATTGCCCAG 60.073 34.615 22.45 2.99 43.80 4.45
2034 3404 5.766670 TGCAACAAAATTGATTTATTGCCCA 59.233 32.000 22.45 11.48 43.80 5.36
2035 3405 6.072563 AGTGCAACAAAATTGATTTATTGCCC 60.073 34.615 22.45 16.63 43.80 5.36
2036 3406 6.797995 CAGTGCAACAAAATTGATTTATTGCC 59.202 34.615 22.45 17.26 43.80 4.52
2037 3407 7.574496 TCAGTGCAACAAAATTGATTTATTGC 58.426 30.769 20.49 20.49 44.21 3.56
2038 3408 9.749490 GATCAGTGCAACAAAATTGATTTATTG 57.251 29.630 0.00 8.13 41.43 1.90
2039 3409 9.491675 TGATCAGTGCAACAAAATTGATTTATT 57.508 25.926 0.00 0.00 41.43 1.40
2040 3410 9.491675 TTGATCAGTGCAACAAAATTGATTTAT 57.508 25.926 0.00 0.00 41.43 1.40
2041 3411 8.763356 GTTGATCAGTGCAACAAAATTGATTTA 58.237 29.630 8.29 0.00 43.77 1.40
2042 3412 7.254863 GGTTGATCAGTGCAACAAAATTGATTT 60.255 33.333 13.47 0.00 45.58 2.17
2043 3413 6.203338 GGTTGATCAGTGCAACAAAATTGATT 59.797 34.615 13.47 0.00 45.58 2.57
2044 3414 5.697633 GGTTGATCAGTGCAACAAAATTGAT 59.302 36.000 13.47 0.00 45.58 2.57
2045 3415 5.049167 GGTTGATCAGTGCAACAAAATTGA 58.951 37.500 13.47 0.00 45.58 2.57
2046 3416 4.809958 TGGTTGATCAGTGCAACAAAATTG 59.190 37.500 13.47 0.00 45.58 2.32
2047 3417 4.810491 GTGGTTGATCAGTGCAACAAAATT 59.190 37.500 13.47 0.00 45.58 1.82
2048 3418 4.141981 TGTGGTTGATCAGTGCAACAAAAT 60.142 37.500 13.47 0.00 45.58 1.82
2049 3419 3.194329 TGTGGTTGATCAGTGCAACAAAA 59.806 39.130 13.47 0.00 45.58 2.44
2050 3420 2.757314 TGTGGTTGATCAGTGCAACAAA 59.243 40.909 13.47 1.69 45.58 2.83
2051 3421 2.373224 TGTGGTTGATCAGTGCAACAA 58.627 42.857 13.47 2.16 45.58 2.83
2052 3422 2.049888 TGTGGTTGATCAGTGCAACA 57.950 45.000 13.47 0.00 45.58 3.33
2053 3423 3.115554 GTTTGTGGTTGATCAGTGCAAC 58.884 45.455 0.00 5.35 43.64 4.17
2054 3424 2.757314 TGTTTGTGGTTGATCAGTGCAA 59.243 40.909 0.00 0.00 0.00 4.08
2055 3425 2.098934 GTGTTTGTGGTTGATCAGTGCA 59.901 45.455 0.00 0.00 0.00 4.57
2056 3426 2.731217 GTGTTTGTGGTTGATCAGTGC 58.269 47.619 0.00 0.00 0.00 4.40
2057 3427 2.611751 TCGTGTTTGTGGTTGATCAGTG 59.388 45.455 0.00 0.00 0.00 3.66
2058 3428 2.872245 CTCGTGTTTGTGGTTGATCAGT 59.128 45.455 0.00 0.00 0.00 3.41
2059 3429 2.872245 ACTCGTGTTTGTGGTTGATCAG 59.128 45.455 0.00 0.00 0.00 2.90
2060 3430 2.869801 GACTCGTGTTTGTGGTTGATCA 59.130 45.455 0.00 0.00 0.00 2.92
2061 3431 2.096909 CGACTCGTGTTTGTGGTTGATC 60.097 50.000 0.00 0.00 0.00 2.92
2062 3432 1.864711 CGACTCGTGTTTGTGGTTGAT 59.135 47.619 0.00 0.00 0.00 2.57
2063 3433 1.282817 CGACTCGTGTTTGTGGTTGA 58.717 50.000 0.00 0.00 0.00 3.18
2064 3434 1.003851 ACGACTCGTGTTTGTGGTTG 58.996 50.000 2.53 0.00 39.18 3.77
2065 3435 1.729284 AACGACTCGTGTTTGTGGTT 58.271 45.000 4.50 0.00 39.99 3.67
2066 3436 1.395608 CAAACGACTCGTGTTTGTGGT 59.604 47.619 4.50 0.00 46.87 4.16
2067 3437 2.085532 CAAACGACTCGTGTTTGTGG 57.914 50.000 4.50 0.00 46.87 4.17
2071 3441 1.263217 GATGCCAAACGACTCGTGTTT 59.737 47.619 4.50 0.00 39.99 2.83
2072 3442 0.865769 GATGCCAAACGACTCGTGTT 59.134 50.000 4.50 0.00 39.99 3.32
2073 3443 0.033504 AGATGCCAAACGACTCGTGT 59.966 50.000 4.50 0.00 39.99 4.49
2074 3444 1.990799 TAGATGCCAAACGACTCGTG 58.009 50.000 4.50 0.00 39.99 4.35
2075 3445 2.094182 ACATAGATGCCAAACGACTCGT 60.094 45.455 0.00 0.00 43.97 4.18
2076 3446 2.540515 ACATAGATGCCAAACGACTCG 58.459 47.619 0.00 0.00 0.00 4.18
2077 3447 4.504461 CAGTACATAGATGCCAAACGACTC 59.496 45.833 0.00 0.00 0.00 3.36
2078 3448 4.433615 CAGTACATAGATGCCAAACGACT 58.566 43.478 0.00 0.00 0.00 4.18
2079 3449 3.555956 CCAGTACATAGATGCCAAACGAC 59.444 47.826 0.00 0.00 0.00 4.34
2080 3450 3.431626 CCCAGTACATAGATGCCAAACGA 60.432 47.826 0.00 0.00 0.00 3.85
2081 3451 2.872245 CCCAGTACATAGATGCCAAACG 59.128 50.000 0.00 0.00 0.00 3.60
2082 3452 3.214328 CCCCAGTACATAGATGCCAAAC 58.786 50.000 0.00 0.00 0.00 2.93
2083 3453 2.849943 ACCCCAGTACATAGATGCCAAA 59.150 45.455 0.00 0.00 0.00 3.28
2084 3454 2.487775 ACCCCAGTACATAGATGCCAA 58.512 47.619 0.00 0.00 0.00 4.52
2085 3455 2.190398 ACCCCAGTACATAGATGCCA 57.810 50.000 0.00 0.00 0.00 4.92
2086 3456 3.258622 GTCTACCCCAGTACATAGATGCC 59.741 52.174 0.00 0.00 0.00 4.40
2087 3457 4.153411 AGTCTACCCCAGTACATAGATGC 58.847 47.826 0.00 0.00 0.00 3.91
2088 3458 5.598830 ACAAGTCTACCCCAGTACATAGATG 59.401 44.000 0.00 0.00 0.00 2.90
2089 3459 5.598830 CACAAGTCTACCCCAGTACATAGAT 59.401 44.000 0.00 0.00 0.00 1.98
2090 3460 4.954202 CACAAGTCTACCCCAGTACATAGA 59.046 45.833 0.00 0.00 0.00 1.98
2091 3461 4.710375 ACACAAGTCTACCCCAGTACATAG 59.290 45.833 0.00 0.00 0.00 2.23
2092 3462 4.464951 CACACAAGTCTACCCCAGTACATA 59.535 45.833 0.00 0.00 0.00 2.29
2093 3463 3.260884 CACACAAGTCTACCCCAGTACAT 59.739 47.826 0.00 0.00 0.00 2.29
2094 3464 2.631062 CACACAAGTCTACCCCAGTACA 59.369 50.000 0.00 0.00 0.00 2.90
2095 3465 2.895404 TCACACAAGTCTACCCCAGTAC 59.105 50.000 0.00 0.00 0.00 2.73
2096 3466 3.162666 CTCACACAAGTCTACCCCAGTA 58.837 50.000 0.00 0.00 0.00 2.74
2097 3467 1.971357 CTCACACAAGTCTACCCCAGT 59.029 52.381 0.00 0.00 0.00 4.00
2098 3468 2.248248 TCTCACACAAGTCTACCCCAG 58.752 52.381 0.00 0.00 0.00 4.45
2099 3469 2.391926 TCTCACACAAGTCTACCCCA 57.608 50.000 0.00 0.00 0.00 4.96
2100 3470 2.832129 TGATCTCACACAAGTCTACCCC 59.168 50.000 0.00 0.00 0.00 4.95
2101 3471 3.851098 GTGATCTCACACAAGTCTACCC 58.149 50.000 5.46 0.00 45.75 3.69
2185 3555 9.598517 AACATTGATGTGTGTCTACAAATTTTT 57.401 25.926 0.00 0.00 41.61 1.94
2186 3556 9.598517 AAACATTGATGTGTGTCTACAAATTTT 57.401 25.926 0.00 0.00 41.61 1.82
2187 3557 9.033481 CAAACATTGATGTGTGTCTACAAATTT 57.967 29.630 6.19 0.00 40.37 1.82
2188 3558 8.412456 TCAAACATTGATGTGTGTCTACAAATT 58.588 29.630 12.68 0.00 44.50 1.82
2189 3559 7.939782 TCAAACATTGATGTGTGTCTACAAAT 58.060 30.769 12.68 0.00 44.50 2.32
2190 3560 7.326968 TCAAACATTGATGTGTGTCTACAAA 57.673 32.000 12.68 0.00 44.50 2.83
2191 3561 6.934048 TCAAACATTGATGTGTGTCTACAA 57.066 33.333 12.68 0.00 44.50 2.41
2212 3582 9.624697 GCTGAATTTTTGTAAGATTGTACATCA 57.375 29.630 0.00 0.00 34.05 3.07
2213 3583 9.846248 AGCTGAATTTTTGTAAGATTGTACATC 57.154 29.630 0.00 0.00 34.05 3.06
2214 3584 9.846248 GAGCTGAATTTTTGTAAGATTGTACAT 57.154 29.630 0.00 0.00 34.05 2.29
2215 3585 8.296713 GGAGCTGAATTTTTGTAAGATTGTACA 58.703 33.333 0.00 0.00 32.11 2.90
2216 3586 8.515414 AGGAGCTGAATTTTTGTAAGATTGTAC 58.485 33.333 0.00 0.00 0.00 2.90
2217 3587 8.635765 AGGAGCTGAATTTTTGTAAGATTGTA 57.364 30.769 0.00 0.00 0.00 2.41
2218 3588 7.530426 AGGAGCTGAATTTTTGTAAGATTGT 57.470 32.000 0.00 0.00 0.00 2.71
2222 3592 9.295825 TGAATTAGGAGCTGAATTTTTGTAAGA 57.704 29.630 0.00 0.00 0.00 2.10
2223 3593 9.912634 TTGAATTAGGAGCTGAATTTTTGTAAG 57.087 29.630 0.00 0.00 0.00 2.34
2224 3594 9.691362 GTTGAATTAGGAGCTGAATTTTTGTAA 57.309 29.630 0.00 0.00 0.00 2.41
2225 3595 9.077885 AGTTGAATTAGGAGCTGAATTTTTGTA 57.922 29.630 0.00 0.00 0.00 2.41
2226 3596 7.955918 AGTTGAATTAGGAGCTGAATTTTTGT 58.044 30.769 0.00 0.00 0.00 2.83
2227 3597 8.822652 AAGTTGAATTAGGAGCTGAATTTTTG 57.177 30.769 0.00 0.00 0.00 2.44
2228 3598 9.914131 GTAAGTTGAATTAGGAGCTGAATTTTT 57.086 29.630 0.00 0.00 0.00 1.94
2229 3599 9.077885 TGTAAGTTGAATTAGGAGCTGAATTTT 57.922 29.630 0.00 0.00 0.00 1.82
2230 3600 8.515414 GTGTAAGTTGAATTAGGAGCTGAATTT 58.485 33.333 0.00 0.00 0.00 1.82
2231 3601 7.885399 AGTGTAAGTTGAATTAGGAGCTGAATT 59.115 33.333 0.00 0.00 0.00 2.17
2232 3602 7.398024 AGTGTAAGTTGAATTAGGAGCTGAAT 58.602 34.615 0.00 0.00 0.00 2.57
2233 3603 6.769512 AGTGTAAGTTGAATTAGGAGCTGAA 58.230 36.000 0.00 0.00 0.00 3.02
2234 3604 6.360370 AGTGTAAGTTGAATTAGGAGCTGA 57.640 37.500 0.00 0.00 0.00 4.26
2235 3605 8.723942 ATTAGTGTAAGTTGAATTAGGAGCTG 57.276 34.615 0.00 0.00 0.00 4.24
2265 3635 9.341078 ACTATTCACATTTGATTTTGCCTTTTT 57.659 25.926 0.00 0.00 0.00 1.94
2266 3636 8.776470 CACTATTCACATTTGATTTTGCCTTTT 58.224 29.630 0.00 0.00 0.00 2.27
2267 3637 7.933033 ACACTATTCACATTTGATTTTGCCTTT 59.067 29.630 0.00 0.00 0.00 3.11
2268 3638 7.444299 ACACTATTCACATTTGATTTTGCCTT 58.556 30.769 0.00 0.00 0.00 4.35
2269 3639 6.996509 ACACTATTCACATTTGATTTTGCCT 58.003 32.000 0.00 0.00 0.00 4.75
2270 3640 7.656707 AACACTATTCACATTTGATTTTGCC 57.343 32.000 0.00 0.00 0.00 4.52
2288 3658 9.715121 CTTTGGGTGAATAGTACTTTAACACTA 57.285 33.333 0.00 0.00 0.00 2.74
2289 3659 7.174426 GCTTTGGGTGAATAGTACTTTAACACT 59.826 37.037 0.00 0.00 0.00 3.55
2290 3660 7.174426 AGCTTTGGGTGAATAGTACTTTAACAC 59.826 37.037 0.00 7.72 0.00 3.32
2291 3661 7.174253 CAGCTTTGGGTGAATAGTACTTTAACA 59.826 37.037 0.00 0.00 42.91 2.41
2292 3662 7.527457 CAGCTTTGGGTGAATAGTACTTTAAC 58.473 38.462 0.00 0.00 42.91 2.01
2293 3663 6.150474 GCAGCTTTGGGTGAATAGTACTTTAA 59.850 38.462 0.00 0.00 42.91 1.52
2294 3664 5.646360 GCAGCTTTGGGTGAATAGTACTTTA 59.354 40.000 0.00 0.00 42.91 1.85
2295 3665 4.459337 GCAGCTTTGGGTGAATAGTACTTT 59.541 41.667 0.00 0.00 42.91 2.66
2296 3666 4.010349 GCAGCTTTGGGTGAATAGTACTT 58.990 43.478 0.00 0.00 42.91 2.24
2297 3667 3.264450 AGCAGCTTTGGGTGAATAGTACT 59.736 43.478 0.00 0.00 42.91 2.73
2298 3668 3.610911 AGCAGCTTTGGGTGAATAGTAC 58.389 45.455 0.00 0.00 42.91 2.73
2299 3669 4.469945 AGTAGCAGCTTTGGGTGAATAGTA 59.530 41.667 0.00 0.00 42.91 1.82
2300 3670 2.887151 AGCAGCTTTGGGTGAATAGT 57.113 45.000 0.00 0.00 42.91 2.12
2301 3671 3.878778 AGTAGCAGCTTTGGGTGAATAG 58.121 45.455 0.00 0.00 42.91 1.73
2302 3672 5.630415 ATAGTAGCAGCTTTGGGTGAATA 57.370 39.130 0.00 0.00 42.91 1.75
2303 3673 2.887151 AGTAGCAGCTTTGGGTGAAT 57.113 45.000 0.00 0.00 42.91 2.57
2304 3674 4.301072 AATAGTAGCAGCTTTGGGTGAA 57.699 40.909 0.00 0.00 42.91 3.18
2305 3675 4.301072 AAATAGTAGCAGCTTTGGGTGA 57.699 40.909 0.00 0.00 42.91 4.02
2306 3676 4.941263 TGTAAATAGTAGCAGCTTTGGGTG 59.059 41.667 0.00 0.00 43.11 4.61
2307 3677 5.174037 TGTAAATAGTAGCAGCTTTGGGT 57.826 39.130 0.00 0.00 0.00 4.51
2308 3678 6.511767 CGAATGTAAATAGTAGCAGCTTTGGG 60.512 42.308 0.00 0.00 0.00 4.12
2309 3679 6.257849 TCGAATGTAAATAGTAGCAGCTTTGG 59.742 38.462 0.00 0.00 0.00 3.28
2310 3680 7.234187 TCGAATGTAAATAGTAGCAGCTTTG 57.766 36.000 0.00 0.00 0.00 2.77
2311 3681 7.843490 TTCGAATGTAAATAGTAGCAGCTTT 57.157 32.000 0.00 0.00 0.00 3.51
2312 3682 8.438676 AATTCGAATGTAAATAGTAGCAGCTT 57.561 30.769 12.25 0.00 0.00 3.74
2313 3683 8.338259 CAAATTCGAATGTAAATAGTAGCAGCT 58.662 33.333 12.25 0.00 0.00 4.24
2314 3684 8.122952 ACAAATTCGAATGTAAATAGTAGCAGC 58.877 33.333 12.25 0.00 0.00 5.25
2315 3685 9.988350 AACAAATTCGAATGTAAATAGTAGCAG 57.012 29.630 12.25 0.00 0.00 4.24
2346 3716 9.512435 GCTCAAAACTCAGTACGTTTATAGATA 57.488 33.333 0.00 0.00 33.76 1.98
2347 3717 8.251721 AGCTCAAAACTCAGTACGTTTATAGAT 58.748 33.333 0.00 0.00 33.76 1.98
2348 3718 7.541091 CAGCTCAAAACTCAGTACGTTTATAGA 59.459 37.037 0.00 0.00 33.76 1.98
2349 3719 7.541091 TCAGCTCAAAACTCAGTACGTTTATAG 59.459 37.037 0.00 0.00 33.76 1.31
2350 3720 7.372714 TCAGCTCAAAACTCAGTACGTTTATA 58.627 34.615 0.00 0.00 33.76 0.98
2351 3721 6.220930 TCAGCTCAAAACTCAGTACGTTTAT 58.779 36.000 0.00 0.00 33.76 1.40
2352 3722 5.593968 TCAGCTCAAAACTCAGTACGTTTA 58.406 37.500 0.00 0.00 33.76 2.01
2353 3723 4.439057 TCAGCTCAAAACTCAGTACGTTT 58.561 39.130 0.00 0.00 36.22 3.60
2354 3724 4.054780 TCAGCTCAAAACTCAGTACGTT 57.945 40.909 0.00 0.00 0.00 3.99
2355 3725 3.728076 TCAGCTCAAAACTCAGTACGT 57.272 42.857 0.00 0.00 0.00 3.57
2356 3726 5.597813 AAATCAGCTCAAAACTCAGTACG 57.402 39.130 0.00 0.00 0.00 3.67
2378 3748 6.585695 AGTAGTGTCTACAGATCCGAAAAA 57.414 37.500 9.16 0.00 0.00 1.94
2379 3749 7.108194 TCTAGTAGTGTCTACAGATCCGAAAA 58.892 38.462 9.16 0.00 0.00 2.29
2380 3750 6.647229 TCTAGTAGTGTCTACAGATCCGAAA 58.353 40.000 9.16 0.00 0.00 3.46
2381 3751 6.231258 TCTAGTAGTGTCTACAGATCCGAA 57.769 41.667 9.16 0.00 0.00 4.30
2382 3752 5.866159 TCTAGTAGTGTCTACAGATCCGA 57.134 43.478 9.16 0.00 0.00 4.55
2383 3753 6.932400 AGATTCTAGTAGTGTCTACAGATCCG 59.068 42.308 9.16 0.00 0.00 4.18
2384 3754 7.174253 CCAGATTCTAGTAGTGTCTACAGATCC 59.826 44.444 9.16 5.65 0.00 3.36
2385 3755 7.308348 GCCAGATTCTAGTAGTGTCTACAGATC 60.308 44.444 9.16 0.00 0.00 2.75
2386 3756 6.488683 GCCAGATTCTAGTAGTGTCTACAGAT 59.511 42.308 9.16 0.00 0.00 2.90
2387 3757 5.823570 GCCAGATTCTAGTAGTGTCTACAGA 59.176 44.000 9.16 7.12 0.00 3.41
2388 3758 5.590663 TGCCAGATTCTAGTAGTGTCTACAG 59.409 44.000 9.16 5.35 0.00 2.74
2389 3759 5.506708 TGCCAGATTCTAGTAGTGTCTACA 58.493 41.667 9.16 2.38 0.00 2.74
2390 3760 6.452494 TTGCCAGATTCTAGTAGTGTCTAC 57.548 41.667 0.00 0.00 0.00 2.59
2391 3761 7.661536 AATTGCCAGATTCTAGTAGTGTCTA 57.338 36.000 0.00 0.00 0.00 2.59
2392 3762 6.552445 AATTGCCAGATTCTAGTAGTGTCT 57.448 37.500 0.00 0.00 0.00 3.41
2393 3763 6.457528 GCAAATTGCCAGATTCTAGTAGTGTC 60.458 42.308 6.72 0.00 37.42 3.67
2394 3764 5.355350 GCAAATTGCCAGATTCTAGTAGTGT 59.645 40.000 6.72 0.00 37.42 3.55
2395 3765 5.814783 GCAAATTGCCAGATTCTAGTAGTG 58.185 41.667 6.72 0.00 37.42 2.74
2410 3780 2.650196 TGGCAGACGGCAAATTGC 59.350 55.556 9.87 9.87 46.20 3.56
2417 3787 2.032681 AAAGAGGTGGCAGACGGC 59.967 61.111 0.00 0.00 43.74 5.68
2418 3788 2.328099 GCAAAGAGGTGGCAGACGG 61.328 63.158 0.00 0.00 0.00 4.79
2419 3789 2.328099 GGCAAAGAGGTGGCAGACG 61.328 63.158 0.00 0.00 43.33 4.18
2420 3790 2.328099 CGGCAAAGAGGTGGCAGAC 61.328 63.158 0.00 0.00 44.02 3.51
2421 3791 2.032528 CGGCAAAGAGGTGGCAGA 59.967 61.111 0.00 0.00 44.02 4.26
2422 3792 2.281761 ACGGCAAAGAGGTGGCAG 60.282 61.111 0.00 0.00 44.02 4.85
2423 3793 2.281484 GACGGCAAAGAGGTGGCA 60.281 61.111 0.00 0.00 44.02 4.92
2424 3794 3.056328 GGACGGCAAAGAGGTGGC 61.056 66.667 0.00 0.00 40.55 5.01
2425 3795 2.742372 CGGACGGCAAAGAGGTGG 60.742 66.667 0.00 0.00 0.00 4.61
2426 3796 3.423154 GCGGACGGCAAAGAGGTG 61.423 66.667 0.00 0.00 42.87 4.00
2427 3797 4.699522 GGCGGACGGCAAAGAGGT 62.700 66.667 13.57 0.00 46.16 3.85
2443 3813 2.684843 GCTCTTTGCCGTCAGCTGG 61.685 63.158 15.13 0.00 44.23 4.85
2444 3814 2.866028 GCTCTTTGCCGTCAGCTG 59.134 61.111 7.63 7.63 44.23 4.24
2454 3824 0.890996 AACGGCAAGGAGGCTCTTTG 60.891 55.000 29.00 29.00 41.46 2.77
2455 3825 0.606673 GAACGGCAAGGAGGCTCTTT 60.607 55.000 15.23 10.66 41.46 2.52
2456 3826 1.003233 GAACGGCAAGGAGGCTCTT 60.003 57.895 15.23 3.23 41.46 2.85
2457 3827 2.665603 GAACGGCAAGGAGGCTCT 59.334 61.111 15.23 0.00 41.46 4.09
2458 3828 2.815647 CGAACGGCAAGGAGGCTC 60.816 66.667 5.78 5.78 41.46 4.70
2468 3838 1.082104 CTTTGTGGAAGCGAACGGC 60.082 57.895 0.00 0.00 44.05 5.68
2476 3846 2.966309 GCCGTCCGCTTTGTGGAAG 61.966 63.158 1.09 3.96 44.24 3.46
2477 3847 2.975799 GCCGTCCGCTTTGTGGAA 60.976 61.111 1.09 0.00 44.24 3.53
2478 3848 3.758973 TTGCCGTCCGCTTTGTGGA 62.759 57.895 0.00 0.00 40.17 4.02
2479 3849 2.731587 CTTTGCCGTCCGCTTTGTGG 62.732 60.000 0.00 0.00 38.78 4.17
2480 3850 1.370414 CTTTGCCGTCCGCTTTGTG 60.370 57.895 0.00 0.00 38.78 3.33
2481 3851 1.098712 TTCTTTGCCGTCCGCTTTGT 61.099 50.000 0.00 0.00 38.78 2.83
2482 3852 0.030101 TTTCTTTGCCGTCCGCTTTG 59.970 50.000 0.00 0.00 38.78 2.77
2483 3853 0.310854 CTTTCTTTGCCGTCCGCTTT 59.689 50.000 0.00 0.00 38.78 3.51
2484 3854 0.818040 ACTTTCTTTGCCGTCCGCTT 60.818 50.000 0.00 0.00 38.78 4.68
2485 3855 1.227853 ACTTTCTTTGCCGTCCGCT 60.228 52.632 0.00 0.00 38.78 5.52
2486 3856 1.082104 CACTTTCTTTGCCGTCCGC 60.082 57.895 0.00 0.00 38.31 5.54
2487 3857 1.082104 GCACTTTCTTTGCCGTCCG 60.082 57.895 0.00 0.00 33.58 4.79
2488 3858 0.383949 TTGCACTTTCTTTGCCGTCC 59.616 50.000 0.00 0.00 39.39 4.79
2489 3859 2.202295 TTTGCACTTTCTTTGCCGTC 57.798 45.000 0.00 0.00 39.39 4.79
2490 3860 2.472816 CATTTGCACTTTCTTTGCCGT 58.527 42.857 0.00 0.00 39.39 5.68
2491 3861 1.794116 CCATTTGCACTTTCTTTGCCG 59.206 47.619 0.00 0.00 39.39 5.69
2492 3862 1.532437 GCCATTTGCACTTTCTTTGCC 59.468 47.619 0.00 0.00 39.39 4.52
2493 3863 2.955607 GCCATTTGCACTTTCTTTGC 57.044 45.000 0.00 0.00 40.77 3.68
2504 3874 6.783892 TCAAATAGACTTTTTGCCATTTGC 57.216 33.333 12.10 0.00 41.77 3.68
2505 3875 7.442062 ACCTTCAAATAGACTTTTTGCCATTTG 59.558 33.333 12.10 6.04 34.73 2.32
2506 3876 7.508687 ACCTTCAAATAGACTTTTTGCCATTT 58.491 30.769 12.10 0.00 34.73 2.32
2507 3877 7.066307 ACCTTCAAATAGACTTTTTGCCATT 57.934 32.000 12.10 0.00 34.73 3.16
2508 3878 6.670695 ACCTTCAAATAGACTTTTTGCCAT 57.329 33.333 12.10 0.00 34.73 4.40
2509 3879 7.001674 TCTACCTTCAAATAGACTTTTTGCCA 58.998 34.615 12.10 2.95 34.73 4.92
2510 3880 7.306213 GTCTACCTTCAAATAGACTTTTTGCC 58.694 38.462 12.10 0.00 42.67 4.52
2511 3881 7.015877 CGTCTACCTTCAAATAGACTTTTTGC 58.984 38.462 12.10 0.00 43.43 3.68
2512 3882 7.519002 CCGTCTACCTTCAAATAGACTTTTTG 58.481 38.462 11.01 11.01 43.43 2.44
2513 3883 6.148976 GCCGTCTACCTTCAAATAGACTTTTT 59.851 38.462 9.15 0.00 43.43 1.94
2514 3884 5.642491 GCCGTCTACCTTCAAATAGACTTTT 59.358 40.000 9.15 0.00 43.43 2.27
2515 3885 5.176592 GCCGTCTACCTTCAAATAGACTTT 58.823 41.667 9.15 0.00 43.43 2.66
2516 3886 4.222145 TGCCGTCTACCTTCAAATAGACTT 59.778 41.667 9.15 0.00 43.43 3.01
2517 3887 3.767673 TGCCGTCTACCTTCAAATAGACT 59.232 43.478 9.15 0.00 43.43 3.24
2518 3888 4.119442 TGCCGTCTACCTTCAAATAGAC 57.881 45.455 2.02 2.02 42.58 2.59
2519 3889 4.811969 TTGCCGTCTACCTTCAAATAGA 57.188 40.909 0.00 0.00 0.00 1.98
2520 3890 4.332819 CCTTTGCCGTCTACCTTCAAATAG 59.667 45.833 0.00 0.00 0.00 1.73
2521 3891 4.258543 CCTTTGCCGTCTACCTTCAAATA 58.741 43.478 0.00 0.00 0.00 1.40
2522 3892 3.081804 CCTTTGCCGTCTACCTTCAAAT 58.918 45.455 0.00 0.00 0.00 2.32
2523 3893 2.500229 CCTTTGCCGTCTACCTTCAAA 58.500 47.619 0.00 0.00 0.00 2.69
2524 3894 1.271163 CCCTTTGCCGTCTACCTTCAA 60.271 52.381 0.00 0.00 0.00 2.69
2525 3895 0.323629 CCCTTTGCCGTCTACCTTCA 59.676 55.000 0.00 0.00 0.00 3.02
2526 3896 1.025113 GCCCTTTGCCGTCTACCTTC 61.025 60.000 0.00 0.00 0.00 3.46
2527 3897 1.002502 GCCCTTTGCCGTCTACCTT 60.003 57.895 0.00 0.00 0.00 3.50
2528 3898 2.669240 GCCCTTTGCCGTCTACCT 59.331 61.111 0.00 0.00 0.00 3.08
2564 3934 3.989698 CTGACCTAGCCACGCCGTG 62.990 68.421 10.95 10.95 0.00 4.94
2565 3935 3.760035 CTGACCTAGCCACGCCGT 61.760 66.667 0.00 0.00 0.00 5.68
2566 3936 4.514577 CCTGACCTAGCCACGCCG 62.515 72.222 0.00 0.00 0.00 6.46
2567 3937 2.854187 GAACCTGACCTAGCCACGCC 62.854 65.000 0.00 0.00 0.00 5.68
2568 3938 1.448013 GAACCTGACCTAGCCACGC 60.448 63.158 0.00 0.00 0.00 5.34
2569 3939 0.608640 AAGAACCTGACCTAGCCACG 59.391 55.000 0.00 0.00 0.00 4.94
2570 3940 2.427506 CAAAGAACCTGACCTAGCCAC 58.572 52.381 0.00 0.00 0.00 5.01
2571 3941 1.271379 GCAAAGAACCTGACCTAGCCA 60.271 52.381 0.00 0.00 0.00 4.75
2572 3942 1.454201 GCAAAGAACCTGACCTAGCC 58.546 55.000 0.00 0.00 0.00 3.93
2573 3943 1.454201 GGCAAAGAACCTGACCTAGC 58.546 55.000 0.00 0.00 0.00 3.42
2574 3944 1.002087 ACGGCAAAGAACCTGACCTAG 59.998 52.381 0.00 0.00 0.00 3.02
2575 3945 1.001633 GACGGCAAAGAACCTGACCTA 59.998 52.381 0.00 0.00 0.00 3.08
2576 3946 0.250338 GACGGCAAAGAACCTGACCT 60.250 55.000 0.00 0.00 0.00 3.85
2577 3947 1.235281 GGACGGCAAAGAACCTGACC 61.235 60.000 0.00 0.00 0.00 4.02
2578 3948 1.566018 CGGACGGCAAAGAACCTGAC 61.566 60.000 0.00 0.00 0.00 3.51
2579 3949 1.301401 CGGACGGCAAAGAACCTGA 60.301 57.895 0.00 0.00 0.00 3.86
2580 3950 2.966309 GCGGACGGCAAAGAACCTG 61.966 63.158 0.00 0.00 42.87 4.00
2581 3951 2.668550 GCGGACGGCAAAGAACCT 60.669 61.111 0.00 0.00 42.87 3.50
2582 3952 3.733960 GGCGGACGGCAAAGAACC 61.734 66.667 13.57 0.00 46.16 3.62
2598 3968 3.121030 CTCTTTGCCGTCCGCTGG 61.121 66.667 0.00 0.00 38.78 4.85
2599 3969 3.121030 CCTCTTTGCCGTCCGCTG 61.121 66.667 0.00 0.00 38.78 5.18
2600 3970 3.302347 CTCCTCTTTGCCGTCCGCT 62.302 63.158 0.00 0.00 38.78 5.52
2601 3971 2.815647 CTCCTCTTTGCCGTCCGC 60.816 66.667 0.00 0.00 38.31 5.54
2602 3972 1.446272 GTCTCCTCTTTGCCGTCCG 60.446 63.158 0.00 0.00 0.00 4.79
2603 3973 1.446272 CGTCTCCTCTTTGCCGTCC 60.446 63.158 0.00 0.00 0.00 4.79
2604 3974 1.009389 CACGTCTCCTCTTTGCCGTC 61.009 60.000 0.00 0.00 0.00 4.79
2605 3975 1.006102 CACGTCTCCTCTTTGCCGT 60.006 57.895 0.00 0.00 0.00 5.68
2606 3976 1.738099 CCACGTCTCCTCTTTGCCG 60.738 63.158 0.00 0.00 0.00 5.69
2607 3977 1.376037 CCCACGTCTCCTCTTTGCC 60.376 63.158 0.00 0.00 0.00 4.52
2608 3978 2.035442 GCCCACGTCTCCTCTTTGC 61.035 63.158 0.00 0.00 0.00 3.68
2609 3979 1.376037 GGCCCACGTCTCCTCTTTG 60.376 63.158 0.00 0.00 0.00 2.77
2610 3980 1.831652 CTGGCCCACGTCTCCTCTTT 61.832 60.000 0.00 0.00 0.00 2.52
2611 3981 2.203788 TGGCCCACGTCTCCTCTT 60.204 61.111 0.00 0.00 0.00 2.85
2612 3982 2.681778 CTGGCCCACGTCTCCTCT 60.682 66.667 0.00 0.00 0.00 3.69
2613 3983 4.459089 GCTGGCCCACGTCTCCTC 62.459 72.222 0.00 0.00 0.00 3.71
2630 4000 2.202892 GAGAGCGGCCGTTTAGGG 60.203 66.667 28.70 0.00 41.48 3.53
2631 4001 0.391263 AAAGAGAGCGGCCGTTTAGG 60.391 55.000 28.70 0.00 44.97 2.69
2632 4002 0.721718 CAAAGAGAGCGGCCGTTTAG 59.278 55.000 28.70 9.59 0.00 1.85
2633 4003 1.296056 GCAAAGAGAGCGGCCGTTTA 61.296 55.000 28.70 0.00 0.00 2.01
2634 4004 2.617274 GCAAAGAGAGCGGCCGTTT 61.617 57.895 28.70 16.01 0.00 3.60
2635 4005 3.050275 GCAAAGAGAGCGGCCGTT 61.050 61.111 28.70 23.32 0.00 4.44
2639 4009 3.491652 GACGGCAAAGAGAGCGGC 61.492 66.667 0.00 0.00 35.96 6.53
2640 4010 2.097038 CAGACGGCAAAGAGAGCGG 61.097 63.158 0.00 0.00 38.17 5.52
2641 4011 2.734673 GCAGACGGCAAAGAGAGCG 61.735 63.158 0.00 0.00 43.97 5.03
2642 4012 3.172919 GCAGACGGCAAAGAGAGC 58.827 61.111 0.00 0.00 43.97 4.09
2645 4015 4.604913 TCTGCTAGCAGACGGCAAAGAG 62.605 54.545 37.64 13.84 46.80 2.85
2646 4016 2.769270 TCTGCTAGCAGACGGCAAAGA 61.769 52.381 37.64 17.11 46.80 2.52
2647 4017 0.390340 TCTGCTAGCAGACGGCAAAG 60.390 55.000 37.64 15.06 46.80 2.77
2648 4018 1.671166 TCTGCTAGCAGACGGCAAA 59.329 52.632 37.64 18.34 46.80 3.68
2649 4019 3.376546 TCTGCTAGCAGACGGCAA 58.623 55.556 37.64 19.05 46.80 4.52
2656 4026 2.354109 TCTTTGTCGTCTGCTAGCAG 57.646 50.000 34.48 34.48 44.86 4.24
2657 4027 2.610479 CCTTCTTTGTCGTCTGCTAGCA 60.610 50.000 18.22 18.22 0.00 3.49
2658 4028 1.996191 CCTTCTTTGTCGTCTGCTAGC 59.004 52.381 8.10 8.10 0.00 3.42
2659 4029 1.996191 GCCTTCTTTGTCGTCTGCTAG 59.004 52.381 0.00 0.00 0.00 3.42
2660 4030 1.337823 GGCCTTCTTTGTCGTCTGCTA 60.338 52.381 0.00 0.00 0.00 3.49
2661 4031 0.603975 GGCCTTCTTTGTCGTCTGCT 60.604 55.000 0.00 0.00 0.00 4.24
2662 4032 1.578206 GGGCCTTCTTTGTCGTCTGC 61.578 60.000 0.84 0.00 0.00 4.26
2663 4033 0.250295 TGGGCCTTCTTTGTCGTCTG 60.250 55.000 4.53 0.00 0.00 3.51
2664 4034 0.250338 GTGGGCCTTCTTTGTCGTCT 60.250 55.000 4.53 0.00 0.00 4.18
2665 4035 0.250338 AGTGGGCCTTCTTTGTCGTC 60.250 55.000 4.53 0.00 0.00 4.20
2666 4036 0.182775 AAGTGGGCCTTCTTTGTCGT 59.817 50.000 4.53 0.00 0.00 4.34
2667 4037 2.178912 TAAGTGGGCCTTCTTTGTCG 57.821 50.000 16.71 0.00 34.46 4.35
2668 4038 3.193479 CCATTAAGTGGGCCTTCTTTGTC 59.807 47.826 16.71 0.00 44.79 3.18
2669 4039 3.165071 CCATTAAGTGGGCCTTCTTTGT 58.835 45.455 16.71 6.50 44.79 2.83
2670 4040 3.874392 CCATTAAGTGGGCCTTCTTTG 57.126 47.619 16.71 11.27 44.79 2.77
2681 4051 3.827634 GGCTCGGCCCATTAAGTG 58.172 61.111 0.00 0.00 44.06 3.16
2697 4067 3.687828 AAGAGAGAGGGGGAGCCGG 62.688 68.421 0.00 0.00 0.00 6.13
2698 4068 1.681486 GAAAGAGAGAGGGGGAGCCG 61.681 65.000 0.00 0.00 0.00 5.52
2699 4069 0.326143 AGAAAGAGAGAGGGGGAGCC 60.326 60.000 0.00 0.00 0.00 4.70
2700 4070 1.119684 GAGAAAGAGAGAGGGGGAGC 58.880 60.000 0.00 0.00 0.00 4.70
2701 4071 2.292192 ACAGAGAAAGAGAGAGGGGGAG 60.292 54.545 0.00 0.00 0.00 4.30
2702 4072 1.719378 ACAGAGAAAGAGAGAGGGGGA 59.281 52.381 0.00 0.00 0.00 4.81
2703 4073 2.107366 GACAGAGAAAGAGAGAGGGGG 58.893 57.143 0.00 0.00 0.00 5.40
2704 4074 3.023832 GAGACAGAGAAAGAGAGAGGGG 58.976 54.545 0.00 0.00 0.00 4.79
2705 4075 3.023832 GGAGACAGAGAAAGAGAGAGGG 58.976 54.545 0.00 0.00 0.00 4.30
2706 4076 3.023832 GGGAGACAGAGAAAGAGAGAGG 58.976 54.545 0.00 0.00 0.00 3.69
2707 4077 3.947834 GAGGGAGACAGAGAAAGAGAGAG 59.052 52.174 0.00 0.00 0.00 3.20
2708 4078 3.308832 GGAGGGAGACAGAGAAAGAGAGA 60.309 52.174 0.00 0.00 0.00 3.10
2709 4079 3.023832 GGAGGGAGACAGAGAAAGAGAG 58.976 54.545 0.00 0.00 0.00 3.20
2710 4080 2.291930 GGGAGGGAGACAGAGAAAGAGA 60.292 54.545 0.00 0.00 0.00 3.10
2711 4081 2.107366 GGGAGGGAGACAGAGAAAGAG 58.893 57.143 0.00 0.00 0.00 2.85
2712 4082 1.433199 TGGGAGGGAGACAGAGAAAGA 59.567 52.381 0.00 0.00 0.00 2.52
2713 4083 1.552792 GTGGGAGGGAGACAGAGAAAG 59.447 57.143 0.00 0.00 0.00 2.62
2714 4084 1.645710 GTGGGAGGGAGACAGAGAAA 58.354 55.000 0.00 0.00 0.00 2.52
2715 4085 0.612174 CGTGGGAGGGAGACAGAGAA 60.612 60.000 0.00 0.00 0.00 2.87
2716 4086 1.000771 CGTGGGAGGGAGACAGAGA 60.001 63.158 0.00 0.00 0.00 3.10
2717 4087 2.716017 GCGTGGGAGGGAGACAGAG 61.716 68.421 0.00 0.00 0.00 3.35
2718 4088 2.680352 GCGTGGGAGGGAGACAGA 60.680 66.667 0.00 0.00 0.00 3.41
2719 4089 4.135153 CGCGTGGGAGGGAGACAG 62.135 72.222 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.