Multiple sequence alignment - TraesCS4D01G095100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G095100 chr4D 100.000 3973 0 0 1 3973 70358561 70362533 0.000000e+00 7337.0
1 TraesCS4D01G095100 chr4D 88.820 161 12 4 1500 1656 74079509 74079351 4.050000e-45 193.0
2 TraesCS4D01G095100 chr4B 95.802 2001 56 13 1456 3450 104337413 104339391 0.000000e+00 3205.0
3 TraesCS4D01G095100 chr4B 90.482 851 46 20 454 1298 104336404 104337225 0.000000e+00 1090.0
4 TraesCS4D01G095100 chr4B 90.832 469 30 7 1 457 104335972 104336439 2.030000e-172 616.0
5 TraesCS4D01G095100 chr4B 88.750 160 13 3 1500 1656 106227566 106227409 1.460000e-44 191.0
6 TraesCS4D01G095100 chr4B 98.551 69 1 0 1389 1457 104337263 104337331 5.390000e-24 122.0
7 TraesCS4D01G095100 chr4B 97.143 35 1 0 1334 1368 104337223 104337257 4.290000e-05 60.2
8 TraesCS4D01G095100 chr4A 92.336 1618 85 22 1670 3274 523456778 523458369 0.000000e+00 2265.0
9 TraesCS4D01G095100 chr4A 86.701 767 61 32 747 1506 523456034 523456766 0.000000e+00 813.0
10 TraesCS4D01G095100 chr4A 94.577 461 17 4 1 457 523455314 523455770 0.000000e+00 706.0
11 TraesCS4D01G095100 chr4A 86.979 192 18 3 3269 3453 523458400 523458591 4.020000e-50 209.0
12 TraesCS4D01G095100 chr4A 90.323 155 10 3 1505 1656 460230801 460230649 8.710000e-47 198.0
13 TraesCS4D01G095100 chr4A 94.690 113 6 0 555 667 523455850 523455962 4.080000e-40 176.0
14 TraesCS4D01G095100 chr4A 75.667 300 38 12 3573 3852 523458593 523458877 2.510000e-22 117.0
15 TraesCS4D01G095100 chr5D 86.650 1221 119 25 1789 2972 404035270 404036483 0.000000e+00 1312.0
16 TraesCS4D01G095100 chr5D 88.750 160 14 3 1504 1661 528717429 528717272 4.050000e-45 193.0
17 TraesCS4D01G095100 chr5D 77.333 225 38 9 1671 1885 404035003 404035224 1.940000e-23 121.0
18 TraesCS4D01G095100 chr5A 83.955 1421 153 36 1746 3109 510289118 510290520 0.000000e+00 1291.0
19 TraesCS4D01G095100 chr5A 88.750 160 14 3 1504 1661 656872436 656872279 4.050000e-45 193.0
20 TraesCS4D01G095100 chr5A 77.293 229 35 14 1671 1886 510288885 510289109 6.970000e-23 119.0
21 TraesCS4D01G095100 chr5B 85.843 1222 112 38 1789 2972 484728196 484726998 0.000000e+00 1242.0
22 TraesCS4D01G095100 chr5B 88.750 160 14 3 1504 1661 665744620 665744463 4.050000e-45 193.0
23 TraesCS4D01G095100 chr5B 77.876 226 36 11 1671 1886 484728611 484728390 1.160000e-25 128.0
24 TraesCS4D01G095100 chr7D 80.531 339 47 9 1789 2109 292419764 292420101 3.970000e-60 243.0
25 TraesCS4D01G095100 chr3D 90.385 156 8 5 1506 1656 315480578 315480425 8.710000e-47 198.0
26 TraesCS4D01G095100 chr7B 89.308 159 11 4 1505 1659 369872871 369872715 1.130000e-45 195.0
27 TraesCS4D01G095100 chr2A 84.553 123 16 3 281 403 641392597 641392478 6.970000e-23 119.0
28 TraesCS4D01G095100 chr2D 83.740 123 17 3 281 403 495779367 495779248 3.240000e-21 113.0
29 TraesCS4D01G095100 chr2B 83.740 123 17 3 281 403 583410826 583410707 3.240000e-21 113.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G095100 chr4D 70358561 70362533 3972 False 7337.000000 7337 100.000000 1 3973 1 chr4D.!!$F1 3972
1 TraesCS4D01G095100 chr4B 104335972 104339391 3419 False 1018.640000 3205 94.562000 1 3450 5 chr4B.!!$F1 3449
2 TraesCS4D01G095100 chr4A 523455314 523458877 3563 False 714.333333 2265 88.491667 1 3852 6 chr4A.!!$F1 3851
3 TraesCS4D01G095100 chr5D 404035003 404036483 1480 False 716.500000 1312 81.991500 1671 2972 2 chr5D.!!$F1 1301
4 TraesCS4D01G095100 chr5A 510288885 510290520 1635 False 705.000000 1291 80.624000 1671 3109 2 chr5A.!!$F1 1438
5 TraesCS4D01G095100 chr5B 484726998 484728611 1613 True 685.000000 1242 81.859500 1671 2972 2 chr5B.!!$R2 1301

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
797 856 0.109342 ATGGGCCTAAATGAGAGCCG 59.891 55.0 4.53 0.0 40.56 5.52 F
1296 1364 0.104304 GTGGGACGATGCGTTATCCT 59.896 55.0 8.78 0.0 41.37 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1640 1808 2.029290 CCATTATACTCCCTCCGTTCCG 60.029 54.545 0.00 0.0 0.00 4.30 R
3175 3719 0.404426 GTTTGGGAGCAGGTACCCTT 59.596 55.000 8.74 0.0 45.74 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 1.144716 GTCATCTGCCTCGATGCCA 59.855 57.895 10.31 0.00 40.41 4.92
58 65 9.264719 CTCGATGCCATATAATTGCTTATATCA 57.735 33.333 0.00 0.00 38.09 2.15
114 121 3.071167 ACCTGTTACAGTTTGGAGGACTC 59.929 47.826 11.68 0.00 0.00 3.36
140 147 4.065789 GTCTCCAAACACTAGAAACCAGG 58.934 47.826 0.00 0.00 0.00 4.45
238 249 2.649531 ATGTCGGGAGTTGGTTGAAA 57.350 45.000 0.00 0.00 0.00 2.69
273 288 9.911788 ATGTGGATATATACCATGAAAAGGATC 57.088 33.333 0.00 0.00 39.69 3.36
400 415 0.814457 CACCTGGAGGAAGAGACGAG 59.186 60.000 0.00 0.00 38.94 4.18
411 426 3.433740 GGAAGAGACGAGGCCCAATTATT 60.434 47.826 0.00 0.00 0.00 1.40
418 433 3.650942 ACGAGGCCCAATTATTAGGATCA 59.349 43.478 0.00 0.00 0.00 2.92
450 465 0.323957 ATGCTCTTGCTCTGCACAGA 59.676 50.000 0.00 0.00 38.71 3.41
451 466 0.323957 TGCTCTTGCTCTGCACAGAT 59.676 50.000 0.00 0.00 38.71 2.90
452 467 0.727970 GCTCTTGCTCTGCACAGATG 59.272 55.000 0.00 0.00 38.71 2.90
453 468 1.370609 CTCTTGCTCTGCACAGATGG 58.629 55.000 0.00 0.00 38.71 3.51
454 469 0.675837 TCTTGCTCTGCACAGATGGC 60.676 55.000 0.00 3.02 38.71 4.40
455 470 1.654954 CTTGCTCTGCACAGATGGCC 61.655 60.000 0.00 0.00 38.71 5.36
456 471 2.045634 GCTCTGCACAGATGGCCA 60.046 61.111 8.56 8.56 36.76 5.36
457 472 1.676635 GCTCTGCACAGATGGCCAA 60.677 57.895 10.96 0.00 36.76 4.52
458 473 1.930908 GCTCTGCACAGATGGCCAAC 61.931 60.000 10.96 7.42 36.76 3.77
459 474 0.607217 CTCTGCACAGATGGCCAACA 60.607 55.000 10.96 0.25 36.76 3.33
460 475 0.890542 TCTGCACAGATGGCCAACAC 60.891 55.000 10.96 4.46 31.41 3.32
461 476 1.870055 CTGCACAGATGGCCAACACC 61.870 60.000 10.96 0.00 0.00 4.16
462 477 2.639327 GCACAGATGGCCAACACCC 61.639 63.158 10.96 0.00 0.00 4.61
463 478 1.228521 CACAGATGGCCAACACCCA 60.229 57.895 10.96 0.00 36.66 4.51
464 479 0.612732 CACAGATGGCCAACACCCAT 60.613 55.000 10.96 0.00 45.47 4.00
465 480 0.612732 ACAGATGGCCAACACCCATG 60.613 55.000 10.96 3.22 42.94 3.66
466 481 1.683365 AGATGGCCAACACCCATGC 60.683 57.895 10.96 0.00 42.94 4.06
467 482 1.683365 GATGGCCAACACCCATGCT 60.683 57.895 10.96 0.00 42.94 3.79
468 483 1.669999 GATGGCCAACACCCATGCTC 61.670 60.000 10.96 0.00 42.94 4.26
469 484 2.036256 GGCCAACACCCATGCTCT 59.964 61.111 0.00 0.00 0.00 4.09
470 485 1.607467 GGCCAACACCCATGCTCTT 60.607 57.895 0.00 0.00 0.00 2.85
471 486 1.588082 GCCAACACCCATGCTCTTG 59.412 57.895 0.00 0.00 0.00 3.02
472 487 1.588082 CCAACACCCATGCTCTTGC 59.412 57.895 0.00 0.00 40.20 4.01
473 488 0.896940 CCAACACCCATGCTCTTGCT 60.897 55.000 0.00 0.00 40.48 3.91
474 489 0.242825 CAACACCCATGCTCTTGCTG 59.757 55.000 0.00 0.00 40.48 4.41
475 490 0.178981 AACACCCATGCTCTTGCTGT 60.179 50.000 0.00 0.00 40.48 4.40
476 491 0.892358 ACACCCATGCTCTTGCTGTG 60.892 55.000 0.00 0.00 40.48 3.66
477 492 1.975407 ACCCATGCTCTTGCTGTGC 60.975 57.895 0.00 0.00 40.48 4.57
479 494 1.211969 CCATGCTCTTGCTGTGCAC 59.788 57.895 10.75 10.75 46.07 4.57
480 495 1.520600 CCATGCTCTTGCTGTGCACA 61.521 55.000 20.37 20.37 46.07 4.57
481 496 0.109735 CATGCTCTTGCTGTGCACAG 60.110 55.000 37.09 37.09 46.07 3.66
662 718 3.747529 TGAAAAGGGAAACGTACCGAATC 59.252 43.478 0.00 0.00 0.00 2.52
686 742 0.896226 ACGGGAGAAGCAGAAGTACC 59.104 55.000 0.00 0.00 0.00 3.34
687 743 1.187087 CGGGAGAAGCAGAAGTACCT 58.813 55.000 0.00 0.00 0.00 3.08
691 747 2.567615 GGAGAAGCAGAAGTACCTTCCA 59.432 50.000 5.51 0.00 40.98 3.53
701 759 3.520691 AGTACCTTCCAGGGGAAAAAC 57.479 47.619 0.00 0.00 41.54 2.43
712 770 3.326297 CAGGGGAAAAACAGAGAGAGAGT 59.674 47.826 0.00 0.00 0.00 3.24
716 774 5.701750 GGGGAAAAACAGAGAGAGAGTAAAC 59.298 44.000 0.00 0.00 0.00 2.01
717 775 5.405873 GGGAAAAACAGAGAGAGAGTAAACG 59.594 44.000 0.00 0.00 0.00 3.60
718 776 5.405873 GGAAAAACAGAGAGAGAGTAAACGG 59.594 44.000 0.00 0.00 0.00 4.44
719 777 4.522722 AAACAGAGAGAGAGTAAACGGG 57.477 45.455 0.00 0.00 0.00 5.28
720 778 2.448453 ACAGAGAGAGAGTAAACGGGG 58.552 52.381 0.00 0.00 0.00 5.73
721 779 1.135333 CAGAGAGAGAGTAAACGGGGC 59.865 57.143 0.00 0.00 0.00 5.80
722 780 1.006162 AGAGAGAGAGTAAACGGGGCT 59.994 52.381 0.00 0.00 0.00 5.19
726 784 2.437895 GAGTAAACGGGGCTGGGC 60.438 66.667 0.00 0.00 0.00 5.36
792 851 2.695147 GGTTCCAATGGGCCTAAATGAG 59.305 50.000 4.53 0.00 0.00 2.90
797 856 0.109342 ATGGGCCTAAATGAGAGCCG 59.891 55.000 4.53 0.00 40.56 5.52
803 862 1.983119 CTAAATGAGAGCCGGGCCCA 61.983 60.000 24.92 12.02 0.00 5.36
814 873 3.313791 AGCCGGGCCCATTTAATATTTT 58.686 40.909 24.92 0.00 0.00 1.82
892 960 5.722021 AGGAAGAAAGAAGACAGAGAGAC 57.278 43.478 0.00 0.00 0.00 3.36
903 971 4.096681 AGACAGAGAGACAGAGAGAGAGA 58.903 47.826 0.00 0.00 0.00 3.10
905 973 4.096681 ACAGAGAGACAGAGAGAGAGAGA 58.903 47.826 0.00 0.00 0.00 3.10
906 974 4.161189 ACAGAGAGACAGAGAGAGAGAGAG 59.839 50.000 0.00 0.00 0.00 3.20
908 976 4.648762 AGAGAGACAGAGAGAGAGAGAGAG 59.351 50.000 0.00 0.00 0.00 3.20
909 977 4.614475 AGAGACAGAGAGAGAGAGAGAGA 58.386 47.826 0.00 0.00 0.00 3.10
910 978 4.648762 AGAGACAGAGAGAGAGAGAGAGAG 59.351 50.000 0.00 0.00 0.00 3.20
911 979 4.614475 AGACAGAGAGAGAGAGAGAGAGA 58.386 47.826 0.00 0.00 0.00 3.10
973 1041 0.942410 CTCCGACGAGCGAAACCAAA 60.942 55.000 0.00 0.00 44.57 3.28
988 1056 1.978617 CAAAGCCGCATCAACCCCT 60.979 57.895 0.00 0.00 0.00 4.79
990 1058 2.142292 AAAGCCGCATCAACCCCTCT 62.142 55.000 0.00 0.00 0.00 3.69
995 1063 2.892640 CATCAACCCCTCTCGCGA 59.107 61.111 9.26 9.26 0.00 5.87
997 1065 0.179073 CATCAACCCCTCTCGCGAAT 60.179 55.000 11.33 0.00 0.00 3.34
1010 1078 2.639926 GCGAATCGATGGACGCGAG 61.640 63.158 15.93 0.00 41.49 5.03
1086 1154 2.474816 CGATTCCTCCGATCTGGTTTC 58.525 52.381 3.97 0.00 39.52 2.78
1111 1179 2.486191 CCTTGCTTGTCTGTCTGTTCCT 60.486 50.000 0.00 0.00 0.00 3.36
1118 1186 1.069204 GTCTGTCTGTTCCTGTGCTCA 59.931 52.381 0.00 0.00 0.00 4.26
1216 1284 3.072476 CATGGCGGATCTAGGGGG 58.928 66.667 0.00 0.00 0.00 5.40
1228 1296 0.845102 CTAGGGGGTGGAACAAGGGT 60.845 60.000 0.00 0.00 44.16 4.34
1296 1364 0.104304 GTGGGACGATGCGTTATCCT 59.896 55.000 8.78 0.00 41.37 3.24
1303 1371 4.051922 GACGATGCGTTATCCTTGAGAAT 58.948 43.478 0.00 0.00 41.37 2.40
1364 1432 7.434307 GCATTGACAGTATGGATGAATTTCTTG 59.566 37.037 0.00 0.00 43.62 3.02
1368 1436 6.248433 ACAGTATGGATGAATTTCTTGGTGT 58.752 36.000 0.00 0.00 43.62 4.16
1369 1437 6.721208 ACAGTATGGATGAATTTCTTGGTGTT 59.279 34.615 0.00 0.00 43.62 3.32
1370 1438 7.031372 CAGTATGGATGAATTTCTTGGTGTTG 58.969 38.462 0.00 0.00 0.00 3.33
1373 1441 5.599732 TGGATGAATTTCTTGGTGTTGTTG 58.400 37.500 0.00 0.00 0.00 3.33
1374 1442 5.128499 TGGATGAATTTCTTGGTGTTGTTGT 59.872 36.000 0.00 0.00 0.00 3.32
1375 1443 6.322456 TGGATGAATTTCTTGGTGTTGTTGTA 59.678 34.615 0.00 0.00 0.00 2.41
1376 1444 6.640907 GGATGAATTTCTTGGTGTTGTTGTAC 59.359 38.462 0.00 0.00 0.00 2.90
1377 1445 6.516739 TGAATTTCTTGGTGTTGTTGTACA 57.483 33.333 0.00 0.00 0.00 2.90
1378 1446 6.925211 TGAATTTCTTGGTGTTGTTGTACAA 58.075 32.000 3.59 3.59 35.42 2.41
1379 1447 7.032580 TGAATTTCTTGGTGTTGTTGTACAAG 58.967 34.615 8.98 0.00 39.00 3.16
1380 1448 4.364415 TTCTTGGTGTTGTTGTACAAGC 57.636 40.909 8.98 4.97 39.00 4.01
1381 1449 2.685897 TCTTGGTGTTGTTGTACAAGCC 59.314 45.455 8.98 7.25 39.00 4.35
1382 1450 2.428544 TGGTGTTGTTGTACAAGCCT 57.571 45.000 8.98 0.00 39.00 4.58
1383 1451 2.020720 TGGTGTTGTTGTACAAGCCTG 58.979 47.619 8.98 0.00 39.00 4.85
1384 1452 2.294074 GGTGTTGTTGTACAAGCCTGA 58.706 47.619 8.98 0.00 39.00 3.86
1385 1453 2.685897 GGTGTTGTTGTACAAGCCTGAA 59.314 45.455 8.98 0.00 39.00 3.02
1386 1454 3.243068 GGTGTTGTTGTACAAGCCTGAAG 60.243 47.826 8.98 0.00 39.00 3.02
1387 1455 2.357637 TGTTGTTGTACAAGCCTGAAGC 59.642 45.455 8.98 0.00 39.00 3.86
1526 1694 9.877222 TTGATACTCCCTCTGTTCACTAATATA 57.123 33.333 0.00 0.00 0.00 0.86
1577 1745 4.748892 ACATACGGACTGAAATGAGTGAG 58.251 43.478 7.93 0.00 0.00 3.51
1582 1750 3.364366 CGGACTGAAATGAGTGAGCAAAC 60.364 47.826 0.00 0.00 0.00 2.93
1583 1751 3.565482 GGACTGAAATGAGTGAGCAAACA 59.435 43.478 0.00 0.00 0.00 2.83
1593 1761 4.201773 TGAGTGAGCAAACACACTAAAACG 60.202 41.667 0.00 0.00 46.12 3.60
1594 1762 3.687698 AGTGAGCAAACACACTAAAACGT 59.312 39.130 0.00 0.00 44.60 3.99
1595 1763 3.783943 GTGAGCAAACACACTAAAACGTG 59.216 43.478 0.00 0.00 40.11 4.49
1607 1775 8.615211 ACACACTAAAACGTGTCTATATATCGA 58.385 33.333 0.00 0.00 45.74 3.59
1669 1837 7.985589 ACGGAGGGAGTATAATGGATAATTTT 58.014 34.615 0.00 0.00 0.00 1.82
1721 1890 4.744570 TCTGTCTCAGCTTATGTTAACCG 58.255 43.478 2.48 0.00 0.00 4.44
1742 1917 4.020573 CCGGCCCAACAGATATAATAGTCA 60.021 45.833 0.00 0.00 0.00 3.41
2266 2772 7.667575 TCCTTCTCTCTGCTATGTAAAATCT 57.332 36.000 0.00 0.00 0.00 2.40
2810 3324 5.620879 GCCTAGAAGAAAGTTTGGCAGATTG 60.621 44.000 7.35 0.00 38.79 2.67
2826 3343 2.359531 AGATTGCGGTCTGTAGCTACTC 59.640 50.000 23.84 13.86 0.00 2.59
2930 3456 1.152546 GACCAACTGGGGGTTTGCT 60.153 57.895 0.00 0.00 42.91 3.91
3014 3555 2.857592 CAAACTGTGCTGCTGAAAGT 57.142 45.000 0.00 0.00 35.30 2.66
3028 3569 1.408702 TGAAAGTGTTTCAGCCCTTGC 59.591 47.619 0.00 0.00 44.21 4.01
3052 3593 4.495422 AGCGTTTGATCTGAATACGACTT 58.505 39.130 0.00 0.00 34.36 3.01
3130 3674 8.579006 TGAACGTTTAAGGTAGATCTTGTCTTA 58.421 33.333 0.46 4.44 38.42 2.10
3145 3689 6.705302 TCTTGTCTTATATGATGATGCCTCC 58.295 40.000 0.00 0.00 0.00 4.30
3175 3719 1.001764 CAATCTGGAGTGCTGGCCA 60.002 57.895 4.71 4.71 0.00 5.36
3181 3725 2.602676 GGAGTGCTGGCCAAGGGTA 61.603 63.158 7.01 0.00 0.00 3.69
3195 3744 4.296265 GGTACCTGCTCCCAAACG 57.704 61.111 4.06 0.00 0.00 3.60
3340 3925 2.008329 CAATCTGGAGCAAGAGTCAGC 58.992 52.381 0.00 0.00 0.00 4.26
3342 3927 1.078567 CTGGAGCAAGAGTCAGCCC 60.079 63.158 4.20 6.19 0.00 5.19
3361 3952 1.895131 CCCCCTCCACAACAAAAGATG 59.105 52.381 0.00 0.00 0.00 2.90
3364 3955 2.564062 CCCTCCACAACAAAAGATGCAT 59.436 45.455 0.00 0.00 0.00 3.96
3412 4003 6.009589 TCTCCTTAGAAATTTGGAACATGCA 58.990 36.000 0.00 0.00 39.30 3.96
3416 4007 1.726248 GAAATTTGGAACATGCACGGC 59.274 47.619 0.00 0.00 39.30 5.68
3451 4042 8.725405 TGTGTAACATATACCGTCAAATTGAT 57.275 30.769 0.00 0.00 45.67 2.57
3452 4043 8.822855 TGTGTAACATATACCGTCAAATTGATC 58.177 33.333 0.00 0.00 45.67 2.92
3454 4045 8.208224 TGTAACATATACCGTCAAATTGATCCT 58.792 33.333 0.00 0.00 0.00 3.24
3455 4046 9.052759 GTAACATATACCGTCAAATTGATCCTT 57.947 33.333 0.00 0.00 0.00 3.36
3457 4048 9.621629 AACATATACCGTCAAATTGATCCTTAA 57.378 29.630 0.00 0.00 0.00 1.85
3458 4049 9.273016 ACATATACCGTCAAATTGATCCTTAAG 57.727 33.333 0.00 0.00 0.00 1.85
3459 4050 8.721478 CATATACCGTCAAATTGATCCTTAAGG 58.279 37.037 15.98 15.98 0.00 2.69
3460 4051 3.694566 ACCGTCAAATTGATCCTTAAGGC 59.305 43.478 17.32 4.37 34.44 4.35
3461 4052 3.066760 CCGTCAAATTGATCCTTAAGGCC 59.933 47.826 17.32 11.23 34.44 5.19
3462 4053 3.947834 CGTCAAATTGATCCTTAAGGCCT 59.052 43.478 17.32 0.00 34.44 5.19
3463 4054 4.201950 CGTCAAATTGATCCTTAAGGCCTG 60.202 45.833 17.32 0.00 34.44 4.85
3464 4055 4.706962 GTCAAATTGATCCTTAAGGCCTGT 59.293 41.667 17.32 0.00 34.44 4.00
3465 4056 5.185828 GTCAAATTGATCCTTAAGGCCTGTT 59.814 40.000 17.32 5.08 34.44 3.16
3466 4057 5.418840 TCAAATTGATCCTTAAGGCCTGTTC 59.581 40.000 17.32 8.57 34.44 3.18
3467 4058 2.691409 TGATCCTTAAGGCCTGTTCG 57.309 50.000 17.32 0.00 34.44 3.95
3468 4059 1.209504 TGATCCTTAAGGCCTGTTCGG 59.790 52.381 17.32 5.02 34.44 4.30
3469 4060 1.485066 GATCCTTAAGGCCTGTTCGGA 59.515 52.381 17.32 11.08 34.44 4.55
3470 4061 0.902531 TCCTTAAGGCCTGTTCGGAG 59.097 55.000 17.32 0.00 34.44 4.63
3471 4062 0.613777 CCTTAAGGCCTGTTCGGAGT 59.386 55.000 5.69 0.00 33.16 3.85
3472 4063 1.405661 CCTTAAGGCCTGTTCGGAGTC 60.406 57.143 5.69 0.00 33.16 3.36
3473 4064 0.611714 TTAAGGCCTGTTCGGAGTCC 59.388 55.000 5.69 0.00 33.16 3.85
3474 4065 1.262640 TAAGGCCTGTTCGGAGTCCC 61.263 60.000 5.69 0.00 33.16 4.46
3475 4066 3.003763 GGCCTGTTCGGAGTCCCT 61.004 66.667 2.80 0.00 33.16 4.20
3476 4067 2.579738 GCCTGTTCGGAGTCCCTC 59.420 66.667 2.80 0.00 33.16 4.30
3477 4068 2.283529 GCCTGTTCGGAGTCCCTCA 61.284 63.158 2.80 0.00 33.16 3.86
3478 4069 1.893786 CCTGTTCGGAGTCCCTCAG 59.106 63.158 2.80 9.40 33.16 3.35
3479 4070 1.216710 CTGTTCGGAGTCCCTCAGC 59.783 63.158 2.80 0.00 31.08 4.26
3480 4071 1.228894 TGTTCGGAGTCCCTCAGCT 60.229 57.895 2.80 0.00 31.08 4.24
3481 4072 1.251527 TGTTCGGAGTCCCTCAGCTC 61.252 60.000 2.80 0.00 31.08 4.09
3482 4073 1.682684 TTCGGAGTCCCTCAGCTCC 60.683 63.158 2.80 0.00 45.78 4.70
3483 4074 3.151022 CGGAGTCCCTCAGCTCCC 61.151 72.222 2.80 0.00 46.35 4.30
3484 4075 3.151022 GGAGTCCCTCAGCTCCCG 61.151 72.222 0.00 0.00 44.06 5.14
3485 4076 3.151022 GAGTCCCTCAGCTCCCGG 61.151 72.222 0.00 0.00 0.00 5.73
3486 4077 3.663815 GAGTCCCTCAGCTCCCGGA 62.664 68.421 0.73 0.00 0.00 5.14
3487 4078 3.151022 GTCCCTCAGCTCCCGGAG 61.151 72.222 10.41 10.41 33.69 4.63
3519 4110 5.776744 AGTTTCAGTTGAAAATCATGGAGC 58.223 37.500 8.74 0.00 44.58 4.70
3520 4111 4.424061 TTCAGTTGAAAATCATGGAGCG 57.576 40.909 0.00 0.00 0.00 5.03
3521 4112 2.162208 TCAGTTGAAAATCATGGAGCGC 59.838 45.455 0.00 0.00 0.00 5.92
3522 4113 2.163010 CAGTTGAAAATCATGGAGCGCT 59.837 45.455 11.27 11.27 0.00 5.92
3523 4114 2.163010 AGTTGAAAATCATGGAGCGCTG 59.837 45.455 18.48 0.00 0.00 5.18
3524 4115 0.452987 TGAAAATCATGGAGCGCTGC 59.547 50.000 23.36 23.36 0.00 5.25
3525 4116 0.737219 GAAAATCATGGAGCGCTGCT 59.263 50.000 29.46 12.53 43.88 4.24
3545 4136 6.017400 TGCTCCACAGATTCTTTGATTTTC 57.983 37.500 1.31 0.00 0.00 2.29
3546 4137 5.535783 TGCTCCACAGATTCTTTGATTTTCA 59.464 36.000 1.31 0.00 0.00 2.69
3547 4138 5.860716 GCTCCACAGATTCTTTGATTTTCAC 59.139 40.000 1.31 0.00 0.00 3.18
3548 4139 6.000891 TCCACAGATTCTTTGATTTTCACG 57.999 37.500 1.31 0.00 0.00 4.35
3549 4140 5.048782 TCCACAGATTCTTTGATTTTCACGG 60.049 40.000 1.31 0.00 0.00 4.94
3550 4141 5.048782 CCACAGATTCTTTGATTTTCACGGA 60.049 40.000 1.31 0.00 0.00 4.69
3551 4142 6.082338 CACAGATTCTTTGATTTTCACGGAG 58.918 40.000 0.00 0.00 0.00 4.63
3552 4143 5.091431 CAGATTCTTTGATTTTCACGGAGC 58.909 41.667 0.00 0.00 0.00 4.70
3553 4144 3.915437 TTCTTTGATTTTCACGGAGCC 57.085 42.857 0.00 0.00 0.00 4.70
3554 4145 1.804151 TCTTTGATTTTCACGGAGCCG 59.196 47.619 7.48 7.48 46.03 5.52
3555 4146 0.878416 TTTGATTTTCACGGAGCCGG 59.122 50.000 14.07 0.00 44.69 6.13
3556 4147 0.250553 TTGATTTTCACGGAGCCGGT 60.251 50.000 14.07 0.00 44.69 5.28
3557 4148 0.609151 TGATTTTCACGGAGCCGGTA 59.391 50.000 14.07 0.00 44.69 4.02
3558 4149 1.287425 GATTTTCACGGAGCCGGTAG 58.713 55.000 14.07 3.10 44.69 3.18
3559 4150 0.899720 ATTTTCACGGAGCCGGTAGA 59.100 50.000 14.07 5.46 44.69 2.59
3560 4151 0.899720 TTTTCACGGAGCCGGTAGAT 59.100 50.000 14.07 0.00 44.69 1.98
3561 4152 0.899720 TTTCACGGAGCCGGTAGATT 59.100 50.000 14.07 0.00 44.69 2.40
3562 4153 0.174845 TTCACGGAGCCGGTAGATTG 59.825 55.000 14.07 1.35 44.69 2.67
3563 4154 1.883084 CACGGAGCCGGTAGATTGC 60.883 63.158 14.07 0.00 44.69 3.56
3564 4155 2.280186 CGGAGCCGGTAGATTGCC 60.280 66.667 1.90 0.00 35.56 4.52
3579 4170 0.685097 TTGCCGAACAGCTCCTTAGT 59.315 50.000 0.00 0.00 0.00 2.24
3581 4172 0.460459 GCCGAACAGCTCCTTAGTCC 60.460 60.000 0.00 0.00 0.00 3.85
3582 4173 0.895530 CCGAACAGCTCCTTAGTCCA 59.104 55.000 0.00 0.00 0.00 4.02
3611 4202 1.795286 GAACAGAGAAACAGACGCTGG 59.205 52.381 10.80 0.00 38.95 4.85
3617 4208 4.690748 CAGAGAAACAGACGCTGGAAATTA 59.309 41.667 10.80 0.00 35.51 1.40
3619 4210 4.642429 AGAAACAGACGCTGGAAATTAGT 58.358 39.130 10.80 0.00 35.51 2.24
3620 4211 5.790593 AGAAACAGACGCTGGAAATTAGTA 58.209 37.500 10.80 0.00 35.51 1.82
3621 4212 6.228258 AGAAACAGACGCTGGAAATTAGTAA 58.772 36.000 10.80 0.00 35.51 2.24
3650 4241 5.414454 ACAACAGAACTTGCTACTCAAAACA 59.586 36.000 0.00 0.00 33.65 2.83
3653 4244 6.058183 ACAGAACTTGCTACTCAAAACAGAT 58.942 36.000 0.00 0.00 33.65 2.90
3655 4246 7.880195 ACAGAACTTGCTACTCAAAACAGATAT 59.120 33.333 0.00 0.00 33.65 1.63
3674 4265 8.766476 ACAGATATTGAGAATTTCAGAGAAGGA 58.234 33.333 0.00 0.00 37.07 3.36
3678 4269 9.917887 ATATTGAGAATTTCAGAGAAGGAATGT 57.082 29.630 0.00 0.00 37.07 2.71
3679 4270 8.647256 ATTGAGAATTTCAGAGAAGGAATGTT 57.353 30.769 0.00 0.00 37.07 2.71
3680 4271 7.444629 TGAGAATTTCAGAGAAGGAATGTTG 57.555 36.000 0.00 0.00 0.00 3.33
3681 4272 7.000472 TGAGAATTTCAGAGAAGGAATGTTGT 59.000 34.615 0.00 0.00 0.00 3.32
3683 4274 8.242729 AGAATTTCAGAGAAGGAATGTTGTTT 57.757 30.769 0.00 0.00 0.00 2.83
3684 4275 8.699130 AGAATTTCAGAGAAGGAATGTTGTTTT 58.301 29.630 0.00 0.00 0.00 2.43
3686 4277 7.645058 TTTCAGAGAAGGAATGTTGTTTTCT 57.355 32.000 0.00 0.00 0.00 2.52
3687 4278 6.624352 TCAGAGAAGGAATGTTGTTTTCTG 57.376 37.500 0.00 0.00 0.00 3.02
3688 4279 6.356556 TCAGAGAAGGAATGTTGTTTTCTGA 58.643 36.000 0.00 0.00 36.97 3.27
3689 4280 6.260936 TCAGAGAAGGAATGTTGTTTTCTGAC 59.739 38.462 0.00 0.00 35.08 3.51
3690 4281 6.038603 CAGAGAAGGAATGTTGTTTTCTGACA 59.961 38.462 0.00 0.00 33.22 3.58
3691 4282 6.038714 AGAGAAGGAATGTTGTTTTCTGACAC 59.961 38.462 0.00 0.00 0.00 3.67
3692 4283 4.918810 AGGAATGTTGTTTTCTGACACC 57.081 40.909 0.00 0.00 0.00 4.16
3693 4284 4.277476 AGGAATGTTGTTTTCTGACACCA 58.723 39.130 0.00 0.00 0.00 4.17
3702 4293 2.281761 CTGACACCACACCCAGGC 60.282 66.667 0.00 0.00 0.00 4.85
3725 4316 6.200854 GGCTTGTTGTTCCACTATTTTTCTTG 59.799 38.462 0.00 0.00 0.00 3.02
3729 4320 7.831753 TGTTGTTCCACTATTTTTCTTGTTCA 58.168 30.769 0.00 0.00 0.00 3.18
3730 4321 7.757624 TGTTGTTCCACTATTTTTCTTGTTCAC 59.242 33.333 0.00 0.00 0.00 3.18
3731 4322 6.491394 TGTTCCACTATTTTTCTTGTTCACG 58.509 36.000 0.00 0.00 0.00 4.35
3732 4323 5.682943 TCCACTATTTTTCTTGTTCACGG 57.317 39.130 0.00 0.00 0.00 4.94
3733 4324 5.369833 TCCACTATTTTTCTTGTTCACGGA 58.630 37.500 0.00 0.00 0.00 4.69
3734 4325 5.468746 TCCACTATTTTTCTTGTTCACGGAG 59.531 40.000 0.00 0.00 0.00 4.63
3735 4326 5.468746 CCACTATTTTTCTTGTTCACGGAGA 59.531 40.000 0.00 0.00 0.00 3.71
3736 4327 6.017440 CCACTATTTTTCTTGTTCACGGAGAA 60.017 38.462 0.00 0.00 0.00 2.87
3737 4328 7.414436 CACTATTTTTCTTGTTCACGGAGAAA 58.586 34.615 4.90 4.90 38.13 2.52
3739 4330 7.913821 ACTATTTTTCTTGTTCACGGAGAAAAC 59.086 33.333 15.27 0.00 44.48 2.43
3740 4331 5.890424 TTTTCTTGTTCACGGAGAAAACT 57.110 34.783 13.09 0.00 41.72 2.66
3741 4332 4.875544 TTCTTGTTCACGGAGAAAACTG 57.124 40.909 0.00 0.00 38.13 3.16
3743 4334 3.869246 TCTTGTTCACGGAGAAAACTGTC 59.131 43.478 0.00 0.00 38.13 3.51
3744 4335 2.557317 TGTTCACGGAGAAAACTGTCC 58.443 47.619 0.00 0.00 38.13 4.02
3745 4336 2.093394 TGTTCACGGAGAAAACTGTCCA 60.093 45.455 0.00 0.00 38.13 4.02
3762 4369 1.659794 CAGCCGTTGTTCAAAGGGG 59.340 57.895 16.44 6.84 0.00 4.79
3763 4370 1.106944 CAGCCGTTGTTCAAAGGGGT 61.107 55.000 16.44 10.04 36.47 4.95
3764 4371 0.396556 AGCCGTTGTTCAAAGGGGTT 60.397 50.000 16.44 2.15 32.71 4.11
3765 4372 1.133730 AGCCGTTGTTCAAAGGGGTTA 60.134 47.619 16.44 0.00 32.71 2.85
3772 4379 6.544564 CCGTTGTTCAAAGGGGTTATATATGT 59.455 38.462 9.10 0.00 0.00 2.29
3776 4383 5.554437 TCAAAGGGGTTATATATGTGCGA 57.446 39.130 0.00 0.00 0.00 5.10
3780 4387 7.604927 TCAAAGGGGTTATATATGTGCGATTAC 59.395 37.037 0.00 0.00 0.00 1.89
3781 4388 5.657474 AGGGGTTATATATGTGCGATTACG 58.343 41.667 0.00 0.00 42.93 3.18
3808 4415 6.692232 GCGTCTGCGATTCTACTATATTTT 57.308 37.500 0.00 0.00 41.33 1.82
3809 4416 7.792383 GCGTCTGCGATTCTACTATATTTTA 57.208 36.000 0.00 0.00 41.33 1.52
3852 4463 3.190535 ACAAATGCCTAACAACTAAGCGG 59.809 43.478 0.00 0.00 0.00 5.52
3853 4464 2.781681 ATGCCTAACAACTAAGCGGT 57.218 45.000 0.00 0.00 0.00 5.68
3854 4465 1.803334 TGCCTAACAACTAAGCGGTG 58.197 50.000 0.00 0.00 0.00 4.94
3855 4466 1.084289 GCCTAACAACTAAGCGGTGG 58.916 55.000 0.00 0.00 0.00 4.61
3856 4467 1.734163 CCTAACAACTAAGCGGTGGG 58.266 55.000 0.00 0.00 0.00 4.61
3857 4468 1.002773 CCTAACAACTAAGCGGTGGGT 59.997 52.381 0.00 0.00 0.00 4.51
3858 4469 2.073816 CTAACAACTAAGCGGTGGGTG 58.926 52.381 4.66 4.66 0.00 4.61
3859 4470 0.181824 AACAACTAAGCGGTGGGTGT 59.818 50.000 5.83 5.83 0.00 4.16
3860 4471 0.534203 ACAACTAAGCGGTGGGTGTG 60.534 55.000 10.08 6.04 0.00 3.82
3861 4472 0.250124 CAACTAAGCGGTGGGTGTGA 60.250 55.000 0.00 0.00 0.00 3.58
3862 4473 0.470766 AACTAAGCGGTGGGTGTGAA 59.529 50.000 0.00 0.00 0.00 3.18
3863 4474 0.470766 ACTAAGCGGTGGGTGTGAAA 59.529 50.000 0.00 0.00 0.00 2.69
3864 4475 1.134037 ACTAAGCGGTGGGTGTGAAAA 60.134 47.619 0.00 0.00 0.00 2.29
3865 4476 1.265905 CTAAGCGGTGGGTGTGAAAAC 59.734 52.381 0.00 0.00 0.00 2.43
3866 4477 1.720694 AAGCGGTGGGTGTGAAAACG 61.721 55.000 0.00 0.00 0.00 3.60
3867 4478 2.181521 GCGGTGGGTGTGAAAACGA 61.182 57.895 0.00 0.00 0.00 3.85
3868 4479 1.938861 CGGTGGGTGTGAAAACGAG 59.061 57.895 0.00 0.00 0.00 4.18
3869 4480 0.812412 CGGTGGGTGTGAAAACGAGT 60.812 55.000 0.00 0.00 0.00 4.18
3870 4481 1.538634 CGGTGGGTGTGAAAACGAGTA 60.539 52.381 0.00 0.00 0.00 2.59
3871 4482 2.140717 GGTGGGTGTGAAAACGAGTAG 58.859 52.381 0.00 0.00 0.00 2.57
3872 4483 2.484241 GGTGGGTGTGAAAACGAGTAGT 60.484 50.000 0.00 0.00 0.00 2.73
3873 4484 3.200483 GTGGGTGTGAAAACGAGTAGTT 58.800 45.455 0.00 0.00 46.76 2.24
3880 4491 3.961729 AACGAGTAGTTTGCCGGC 58.038 55.556 22.73 22.73 40.88 6.13
3881 4492 1.370064 AACGAGTAGTTTGCCGGCT 59.630 52.632 29.70 9.99 40.88 5.52
3882 4493 0.949105 AACGAGTAGTTTGCCGGCTG 60.949 55.000 29.70 8.19 40.88 4.85
3883 4494 2.100631 CGAGTAGTTTGCCGGCTGG 61.101 63.158 29.70 7.41 38.77 4.85
3884 4495 1.745489 GAGTAGTTTGCCGGCTGGG 60.745 63.158 29.70 1.19 39.58 4.45
3893 4504 3.164269 CCGGCTGGGCTAGTCCAT 61.164 66.667 18.38 0.00 36.05 3.41
3894 4505 2.423446 CGGCTGGGCTAGTCCATC 59.577 66.667 18.38 13.28 36.05 3.51
3895 4506 2.423446 GGCTGGGCTAGTCCATCG 59.577 66.667 18.38 7.46 36.05 3.84
3896 4507 2.134287 GGCTGGGCTAGTCCATCGA 61.134 63.158 18.38 0.00 36.05 3.59
3897 4508 1.068250 GCTGGGCTAGTCCATCGAC 59.932 63.158 18.38 3.21 39.50 4.20
3898 4509 1.742768 CTGGGCTAGTCCATCGACC 59.257 63.158 18.38 0.00 40.12 4.79
3899 4510 0.757188 CTGGGCTAGTCCATCGACCT 60.757 60.000 18.38 0.00 40.12 3.85
3900 4511 0.554305 TGGGCTAGTCCATCGACCTA 59.446 55.000 13.40 0.00 40.12 3.08
3901 4512 0.960286 GGGCTAGTCCATCGACCTAC 59.040 60.000 9.01 0.00 40.12 3.18
3902 4513 1.688772 GGCTAGTCCATCGACCTACA 58.311 55.000 0.00 0.00 40.12 2.74
3903 4514 1.609555 GGCTAGTCCATCGACCTACAG 59.390 57.143 0.00 0.00 40.12 2.74
3904 4515 1.001158 GCTAGTCCATCGACCTACAGC 60.001 57.143 0.00 0.00 40.12 4.40
3905 4516 1.609555 CTAGTCCATCGACCTACAGCC 59.390 57.143 0.00 0.00 40.12 4.85
3906 4517 1.065928 GTCCATCGACCTACAGCCG 59.934 63.158 0.00 0.00 32.40 5.52
3907 4518 2.279517 CCATCGACCTACAGCCGC 60.280 66.667 0.00 0.00 0.00 6.53
3908 4519 2.279517 CATCGACCTACAGCCGCC 60.280 66.667 0.00 0.00 0.00 6.13
3909 4520 2.758327 ATCGACCTACAGCCGCCA 60.758 61.111 0.00 0.00 0.00 5.69
3910 4521 3.077519 ATCGACCTACAGCCGCCAC 62.078 63.158 0.00 0.00 0.00 5.01
3911 4522 4.814294 CGACCTACAGCCGCCACC 62.814 72.222 0.00 0.00 0.00 4.61
3912 4523 3.391382 GACCTACAGCCGCCACCT 61.391 66.667 0.00 0.00 0.00 4.00
3913 4524 2.038329 ACCTACAGCCGCCACCTA 59.962 61.111 0.00 0.00 0.00 3.08
3914 4525 2.294132 GACCTACAGCCGCCACCTAC 62.294 65.000 0.00 0.00 0.00 3.18
3915 4526 2.499685 CTACAGCCGCCACCTACC 59.500 66.667 0.00 0.00 0.00 3.18
3916 4527 3.078836 TACAGCCGCCACCTACCC 61.079 66.667 0.00 0.00 0.00 3.69
3917 4528 3.612115 TACAGCCGCCACCTACCCT 62.612 63.158 0.00 0.00 0.00 4.34
3918 4529 2.227494 TACAGCCGCCACCTACCCTA 62.227 60.000 0.00 0.00 0.00 3.53
3919 4530 2.039951 AGCCGCCACCTACCCTAA 59.960 61.111 0.00 0.00 0.00 2.69
3920 4531 1.614226 AGCCGCCACCTACCCTAAA 60.614 57.895 0.00 0.00 0.00 1.85
3921 4532 1.202769 AGCCGCCACCTACCCTAAAA 61.203 55.000 0.00 0.00 0.00 1.52
3922 4533 0.322726 GCCGCCACCTACCCTAAAAA 60.323 55.000 0.00 0.00 0.00 1.94
3923 4534 1.746470 CCGCCACCTACCCTAAAAAG 58.254 55.000 0.00 0.00 0.00 2.27
3924 4535 1.003928 CCGCCACCTACCCTAAAAAGT 59.996 52.381 0.00 0.00 0.00 2.66
3925 4536 2.553685 CCGCCACCTACCCTAAAAAGTT 60.554 50.000 0.00 0.00 0.00 2.66
3926 4537 3.307621 CCGCCACCTACCCTAAAAAGTTA 60.308 47.826 0.00 0.00 0.00 2.24
3927 4538 3.937079 CGCCACCTACCCTAAAAAGTTAG 59.063 47.826 0.00 0.00 37.12 2.34
3940 4551 7.908827 CTAAAAAGTTAGGGTTTCTCTCCTC 57.091 40.000 0.00 0.00 34.21 3.71
3941 4552 4.912317 AAAGTTAGGGTTTCTCTCCTCC 57.088 45.455 0.00 0.00 34.75 4.30
3942 4553 2.835389 AGTTAGGGTTTCTCTCCTCCC 58.165 52.381 0.00 0.00 40.16 4.30
3943 4554 1.481363 GTTAGGGTTTCTCTCCTCCCG 59.519 57.143 0.00 0.00 44.13 5.14
3944 4555 0.686769 TAGGGTTTCTCTCCTCCCGC 60.687 60.000 0.00 0.00 44.13 6.13
3945 4556 2.585153 GGTTTCTCTCCTCCCGCC 59.415 66.667 0.00 0.00 0.00 6.13
3946 4557 2.184579 GTTTCTCTCCTCCCGCCG 59.815 66.667 0.00 0.00 0.00 6.46
3947 4558 3.771160 TTTCTCTCCTCCCGCCGC 61.771 66.667 0.00 0.00 0.00 6.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
114 121 2.724977 TCTAGTGTTTGGAGACGCTG 57.275 50.000 1.66 0.00 40.37 5.18
140 147 0.608308 GATTATAAGTGCCCGGGCCC 60.608 60.000 41.75 32.64 41.09 5.80
218 229 2.649531 TTCAACCAACTCCCGACATT 57.350 45.000 0.00 0.00 0.00 2.71
238 249 5.551583 TGGTATATATCCACATCCTGCCTTT 59.448 40.000 0.00 0.00 0.00 3.11
273 288 2.970324 CCGGTTGACACCACCGTG 60.970 66.667 15.67 5.65 44.53 4.94
400 415 4.013050 GCTCTGATCCTAATAATTGGGCC 58.987 47.826 0.00 0.00 0.00 5.80
411 426 0.694444 GGGGGTTGGCTCTGATCCTA 60.694 60.000 0.00 0.00 0.00 2.94
418 433 2.943265 AGCATGGGGGTTGGCTCT 60.943 61.111 0.00 0.00 28.71 4.09
450 465 1.683365 GAGCATGGGTGTTGGCCAT 60.683 57.895 6.09 0.00 0.00 4.40
451 466 2.283101 GAGCATGGGTGTTGGCCA 60.283 61.111 0.00 0.00 0.00 5.36
452 467 1.607467 AAGAGCATGGGTGTTGGCC 60.607 57.895 0.00 0.00 0.00 5.36
453 468 1.588082 CAAGAGCATGGGTGTTGGC 59.412 57.895 0.00 0.00 32.06 4.52
454 469 0.896940 AGCAAGAGCATGGGTGTTGG 60.897 55.000 7.30 0.00 45.49 3.77
455 470 0.242825 CAGCAAGAGCATGGGTGTTG 59.757 55.000 0.00 1.49 45.49 3.33
456 471 0.178981 ACAGCAAGAGCATGGGTGTT 60.179 50.000 0.00 0.00 45.49 3.32
457 472 0.892358 CACAGCAAGAGCATGGGTGT 60.892 55.000 0.00 0.00 45.49 4.16
458 473 1.880894 CACAGCAAGAGCATGGGTG 59.119 57.895 0.00 0.00 45.49 4.61
459 474 1.975407 GCACAGCAAGAGCATGGGT 60.975 57.895 0.00 0.00 45.49 4.51
460 475 1.974875 TGCACAGCAAGAGCATGGG 60.975 57.895 0.00 0.00 45.49 4.00
461 476 1.211969 GTGCACAGCAAGAGCATGG 59.788 57.895 13.17 0.00 45.47 3.66
462 477 0.109735 CTGTGCACAGCAAGAGCATG 60.110 55.000 32.39 7.46 45.47 4.06
463 478 0.250597 TCTGTGCACAGCAAGAGCAT 60.251 50.000 36.76 0.00 45.47 3.79
464 479 0.250597 ATCTGTGCACAGCAAGAGCA 60.251 50.000 36.76 21.21 45.49 4.26
465 480 0.168348 CATCTGTGCACAGCAAGAGC 59.832 55.000 36.76 0.00 41.47 4.09
466 481 0.803117 CCATCTGTGCACAGCAAGAG 59.197 55.000 36.76 23.51 41.47 2.85
467 482 1.239296 GCCATCTGTGCACAGCAAGA 61.239 55.000 36.76 23.14 41.47 3.02
468 483 1.211969 GCCATCTGTGCACAGCAAG 59.788 57.895 36.76 27.14 41.47 4.01
469 484 2.270257 GGCCATCTGTGCACAGCAA 61.270 57.895 36.76 24.04 41.47 3.91
470 485 2.674033 GGCCATCTGTGCACAGCA 60.674 61.111 36.76 26.37 43.46 4.41
471 486 0.749091 TATGGCCATCTGTGCACAGC 60.749 55.000 36.76 27.14 43.46 4.40
472 487 1.306148 CTATGGCCATCTGTGCACAG 58.694 55.000 36.07 36.07 45.08 3.66
473 488 0.107066 CCTATGGCCATCTGTGCACA 60.107 55.000 24.80 20.37 0.00 4.57
474 489 0.181114 TCCTATGGCCATCTGTGCAC 59.819 55.000 24.80 10.75 0.00 4.57
475 490 1.072806 GATCCTATGGCCATCTGTGCA 59.927 52.381 24.80 1.72 0.00 4.57
476 491 1.818642 GATCCTATGGCCATCTGTGC 58.181 55.000 24.80 6.79 0.00 4.57
477 492 1.338484 CCGATCCTATGGCCATCTGTG 60.338 57.143 24.80 11.03 0.00 3.66
478 493 0.979665 CCGATCCTATGGCCATCTGT 59.020 55.000 24.80 7.05 0.00 3.41
479 494 1.206610 CTCCGATCCTATGGCCATCTG 59.793 57.143 24.80 16.31 0.00 2.90
480 495 1.566211 CTCCGATCCTATGGCCATCT 58.434 55.000 24.80 1.70 0.00 2.90
481 496 0.107945 GCTCCGATCCTATGGCCATC 60.108 60.000 24.80 7.47 0.00 3.51
662 718 0.242825 TTCTGCTTCTCCCGTACACG 59.757 55.000 0.00 0.00 39.44 4.49
686 742 3.073062 TCTCTCTGTTTTTCCCCTGGAAG 59.927 47.826 0.00 0.00 43.06 3.46
687 743 3.053077 TCTCTCTGTTTTTCCCCTGGAA 58.947 45.455 0.00 0.00 40.27 3.53
691 747 3.592865 ACTCTCTCTCTGTTTTTCCCCT 58.407 45.455 0.00 0.00 0.00 4.79
701 759 1.135333 GCCCCGTTTACTCTCTCTCTG 59.865 57.143 0.00 0.00 0.00 3.35
733 791 0.323360 CCAGGCCGATCCCTCAAAAA 60.323 55.000 0.00 0.00 31.24 1.94
734 792 1.302949 CCAGGCCGATCCCTCAAAA 59.697 57.895 0.00 0.00 31.24 2.44
735 793 2.679342 CCCAGGCCGATCCCTCAAA 61.679 63.158 0.00 0.00 31.24 2.69
736 794 3.089874 CCCAGGCCGATCCCTCAA 61.090 66.667 0.00 0.00 31.24 3.02
748 806 2.368221 CTCTCTCTCATTTAGGCCCAGG 59.632 54.545 0.00 0.00 0.00 4.45
792 851 2.215942 ATATTAAATGGGCCCGGCTC 57.784 50.000 19.37 5.65 0.00 4.70
797 856 4.100344 ACACCGAAAATATTAAATGGGCCC 59.900 41.667 17.59 17.59 0.00 5.80
880 948 4.532126 TCTCTCTCTCTGTCTCTCTGTCTT 59.468 45.833 0.00 0.00 0.00 3.01
882 950 4.160439 TCTCTCTCTCTCTGTCTCTCTGTC 59.840 50.000 0.00 0.00 0.00 3.51
892 960 3.494048 GCCTCTCTCTCTCTCTCTCTCTG 60.494 56.522 0.00 0.00 0.00 3.35
903 971 0.902516 GTGGTGTGGCCTCTCTCTCT 60.903 60.000 3.32 0.00 38.35 3.10
905 973 1.915769 GGTGGTGTGGCCTCTCTCT 60.916 63.158 3.32 0.00 38.35 3.10
906 974 1.557269 ATGGTGGTGTGGCCTCTCTC 61.557 60.000 3.32 0.00 38.35 3.20
908 976 1.078143 GATGGTGGTGTGGCCTCTC 60.078 63.158 3.32 0.28 38.35 3.20
909 977 2.606587 GGATGGTGGTGTGGCCTCT 61.607 63.158 3.32 0.00 38.35 3.69
910 978 2.044946 GGATGGTGGTGTGGCCTC 60.045 66.667 3.32 0.00 38.35 4.70
911 979 3.661648 GGGATGGTGGTGTGGCCT 61.662 66.667 3.32 0.00 38.35 5.19
973 1041 3.011517 AGAGGGGTTGATGCGGCT 61.012 61.111 0.00 0.00 0.00 5.52
995 1063 2.655364 CGCTCGCGTCCATCGATT 60.655 61.111 5.77 0.00 42.86 3.34
1201 1269 2.445845 CACCCCCTAGATCCGCCA 60.446 66.667 0.00 0.00 0.00 5.69
1216 1284 1.074951 CCCCTCACCCTTGTTCCAC 59.925 63.158 0.00 0.00 0.00 4.02
1228 1296 2.490168 GCAAAACCCTAGTTTCCCCTCA 60.490 50.000 0.00 0.00 45.54 3.86
1296 1364 2.879002 CTCCGCTAGCAGATTCTCAA 57.121 50.000 16.45 0.00 0.00 3.02
1364 1432 2.294074 TCAGGCTTGTACAACAACACC 58.706 47.619 3.59 1.81 33.96 4.16
1368 1436 1.953686 GGCTTCAGGCTTGTACAACAA 59.046 47.619 3.59 0.00 41.46 2.83
1369 1437 1.604604 GGCTTCAGGCTTGTACAACA 58.395 50.000 3.59 0.00 41.46 3.33
1379 1447 3.028130 AGACTAACTAGAGGCTTCAGGC 58.972 50.000 0.00 0.00 41.43 4.85
1380 1448 4.274147 TGAGACTAACTAGAGGCTTCAGG 58.726 47.826 0.00 0.00 33.76 3.86
1381 1449 5.417580 AGTTGAGACTAACTAGAGGCTTCAG 59.582 44.000 0.00 0.00 39.03 3.02
1382 1450 5.326069 AGTTGAGACTAACTAGAGGCTTCA 58.674 41.667 0.00 0.00 39.03 3.02
1383 1451 5.416326 TGAGTTGAGACTAACTAGAGGCTTC 59.584 44.000 0.00 0.00 40.78 3.86
1384 1452 5.326069 TGAGTTGAGACTAACTAGAGGCTT 58.674 41.667 0.00 0.00 40.78 4.35
1385 1453 4.924625 TGAGTTGAGACTAACTAGAGGCT 58.075 43.478 0.00 0.00 40.78 4.58
1386 1454 5.358442 TCATGAGTTGAGACTAACTAGAGGC 59.642 44.000 0.00 0.00 40.78 4.70
1640 1808 2.029290 CCATTATACTCCCTCCGTTCCG 60.029 54.545 0.00 0.00 0.00 4.30
1676 1844 8.409371 CAGATGAGAAGCTTCTATACTAACACA 58.591 37.037 28.53 18.20 37.73 3.72
1721 1890 6.820656 CAGATGACTATTATATCTGTTGGGCC 59.179 42.308 0.00 0.00 41.66 5.80
2266 2772 5.070981 GGAAGGGAGATGAAGATGTCACATA 59.929 44.000 0.00 0.00 39.72 2.29
2637 3151 2.032634 GCGCCATTCACCACGAAGA 61.033 57.895 0.00 0.00 36.95 2.87
2810 3324 2.860735 CAATTGAGTAGCTACAGACCGC 59.139 50.000 25.28 8.01 0.00 5.68
2826 3343 8.986847 TCCAAAAGCATAATGTTACAACAATTG 58.013 29.630 3.24 3.24 43.03 2.32
2930 3456 0.776810 TGGATGGGTTCTCAAAGGCA 59.223 50.000 0.00 0.00 0.00 4.75
3013 3554 1.576421 CTCGCAAGGGCTGAAACAC 59.424 57.895 0.00 0.00 38.10 3.32
3014 3555 4.063529 CTCGCAAGGGCTGAAACA 57.936 55.556 0.00 0.00 38.10 2.83
3028 3569 3.061797 GTCGTATTCAGATCAAACGCTCG 60.062 47.826 0.00 0.00 33.75 5.03
3052 3593 2.936919 ACAGAGCAAATGTGGAGTCA 57.063 45.000 0.00 0.00 0.00 3.41
3130 3674 4.223255 CAGAGTGAGGAGGCATCATCATAT 59.777 45.833 19.26 10.94 46.92 1.78
3145 3689 3.705579 ACTCCAGATTGATCCAGAGTGAG 59.294 47.826 10.86 0.00 37.91 3.51
3175 3719 0.404426 GTTTGGGAGCAGGTACCCTT 59.596 55.000 8.74 0.00 45.74 3.95
3195 3744 0.598065 AACAAGTCAAATGGAGCGCC 59.402 50.000 2.29 0.00 0.00 6.53
3342 3927 1.273327 GCATCTTTTGTTGTGGAGGGG 59.727 52.381 0.00 0.00 0.00 4.79
3361 3952 7.094506 TAATCATGATTACAGAGGCAATGATGC 60.095 37.037 21.67 0.00 40.69 3.91
3364 3955 8.380867 AGATAATCATGATTACAGAGGCAATGA 58.619 33.333 26.51 5.82 36.24 2.57
3412 4003 0.956633 TACACAGAAGAGAACGCCGT 59.043 50.000 0.00 0.00 0.00 5.68
3416 4007 6.414109 CGGTATATGTTACACAGAAGAGAACG 59.586 42.308 0.00 0.00 0.00 3.95
3436 4027 5.531287 GCCTTAAGGATCAATTTGACGGTAT 59.469 40.000 26.21 0.00 37.39 2.73
3450 4041 1.486726 CTCCGAACAGGCCTTAAGGAT 59.513 52.381 26.21 9.80 40.77 3.24
3451 4042 0.902531 CTCCGAACAGGCCTTAAGGA 59.097 55.000 26.21 9.27 40.77 3.36
3452 4043 0.613777 ACTCCGAACAGGCCTTAAGG 59.386 55.000 17.81 17.81 40.77 2.69
3454 4045 0.611714 GGACTCCGAACAGGCCTTAA 59.388 55.000 0.00 0.00 38.78 1.85
3455 4046 1.262640 GGGACTCCGAACAGGCCTTA 61.263 60.000 0.00 0.00 42.12 2.69
3456 4047 2.593956 GGGACTCCGAACAGGCCTT 61.594 63.158 0.00 0.00 42.12 4.35
3457 4048 3.003763 GGGACTCCGAACAGGCCT 61.004 66.667 0.00 0.00 42.12 5.19
3458 4049 3.003763 AGGGACTCCGAACAGGCC 61.004 66.667 0.00 0.00 41.65 5.19
3470 4061 3.151022 CTCCGGGAGCTGAGGGAC 61.151 72.222 11.83 0.00 0.00 4.46
3491 4082 3.895041 TGATTTTCAACTGAAACTCCCCC 59.105 43.478 15.76 0.00 43.01 5.40
3492 4083 5.473039 CATGATTTTCAACTGAAACTCCCC 58.527 41.667 15.76 2.63 43.01 4.81
3493 4084 5.243730 TCCATGATTTTCAACTGAAACTCCC 59.756 40.000 15.76 3.93 43.01 4.30
3494 4085 6.331369 TCCATGATTTTCAACTGAAACTCC 57.669 37.500 15.76 5.76 43.01 3.85
3495 4086 5.860716 GCTCCATGATTTTCAACTGAAACTC 59.139 40.000 12.98 12.98 43.01 3.01
3496 4087 5.563475 CGCTCCATGATTTTCAACTGAAACT 60.563 40.000 4.38 0.00 43.01 2.66
3497 4088 4.618489 CGCTCCATGATTTTCAACTGAAAC 59.382 41.667 4.38 0.00 43.01 2.78
3498 4089 4.797471 CGCTCCATGATTTTCAACTGAAA 58.203 39.130 0.69 0.69 41.77 2.69
3499 4090 3.366273 GCGCTCCATGATTTTCAACTGAA 60.366 43.478 0.00 0.00 0.00 3.02
3500 4091 2.162208 GCGCTCCATGATTTTCAACTGA 59.838 45.455 0.00 0.00 0.00 3.41
3501 4092 2.163010 AGCGCTCCATGATTTTCAACTG 59.837 45.455 2.64 0.00 0.00 3.16
3502 4093 2.163010 CAGCGCTCCATGATTTTCAACT 59.837 45.455 7.13 0.00 0.00 3.16
3503 4094 2.523015 CAGCGCTCCATGATTTTCAAC 58.477 47.619 7.13 0.00 0.00 3.18
3504 4095 1.135315 GCAGCGCTCCATGATTTTCAA 60.135 47.619 7.13 0.00 0.00 2.69
3505 4096 0.452987 GCAGCGCTCCATGATTTTCA 59.547 50.000 7.13 0.00 0.00 2.69
3506 4097 0.737219 AGCAGCGCTCCATGATTTTC 59.263 50.000 7.13 0.00 30.62 2.29
3507 4098 2.877975 AGCAGCGCTCCATGATTTT 58.122 47.368 7.13 0.00 30.62 1.82
3508 4099 4.651867 AGCAGCGCTCCATGATTT 57.348 50.000 7.13 0.00 30.62 2.17
3517 4108 1.449246 GAATCTGTGGAGCAGCGCT 60.449 57.895 2.64 2.64 44.66 5.92
3518 4109 1.023513 AAGAATCTGTGGAGCAGCGC 61.024 55.000 0.00 0.00 44.66 5.92
3519 4110 1.129998 CAAAGAATCTGTGGAGCAGCG 59.870 52.381 0.00 0.00 44.66 5.18
3520 4111 2.430465 TCAAAGAATCTGTGGAGCAGC 58.570 47.619 0.00 0.00 44.66 5.25
3521 4112 5.640189 AAATCAAAGAATCTGTGGAGCAG 57.360 39.130 0.00 0.00 46.34 4.24
3522 4113 5.535783 TGAAAATCAAAGAATCTGTGGAGCA 59.464 36.000 0.00 0.00 0.00 4.26
3523 4114 5.860716 GTGAAAATCAAAGAATCTGTGGAGC 59.139 40.000 0.00 0.00 0.00 4.70
3524 4115 6.082338 CGTGAAAATCAAAGAATCTGTGGAG 58.918 40.000 0.00 0.00 0.00 3.86
3525 4116 5.048782 CCGTGAAAATCAAAGAATCTGTGGA 60.049 40.000 0.00 0.00 0.00 4.02
3526 4117 5.048782 TCCGTGAAAATCAAAGAATCTGTGG 60.049 40.000 0.00 0.00 0.00 4.17
3527 4118 6.000891 TCCGTGAAAATCAAAGAATCTGTG 57.999 37.500 0.00 0.00 0.00 3.66
3528 4119 5.335191 GCTCCGTGAAAATCAAAGAATCTGT 60.335 40.000 0.00 0.00 0.00 3.41
3529 4120 5.091431 GCTCCGTGAAAATCAAAGAATCTG 58.909 41.667 0.00 0.00 0.00 2.90
3530 4121 4.156739 GGCTCCGTGAAAATCAAAGAATCT 59.843 41.667 0.00 0.00 0.00 2.40
3531 4122 4.415735 GGCTCCGTGAAAATCAAAGAATC 58.584 43.478 0.00 0.00 0.00 2.52
3532 4123 3.119849 CGGCTCCGTGAAAATCAAAGAAT 60.120 43.478 0.00 0.00 34.35 2.40
3533 4124 2.225491 CGGCTCCGTGAAAATCAAAGAA 59.775 45.455 0.00 0.00 34.35 2.52
3534 4125 1.804151 CGGCTCCGTGAAAATCAAAGA 59.196 47.619 0.00 0.00 34.35 2.52
3535 4126 1.135689 CCGGCTCCGTGAAAATCAAAG 60.136 52.381 7.59 0.00 37.81 2.77
3536 4127 0.878416 CCGGCTCCGTGAAAATCAAA 59.122 50.000 7.59 0.00 37.81 2.69
3537 4128 0.250553 ACCGGCTCCGTGAAAATCAA 60.251 50.000 0.00 0.00 37.81 2.57
3538 4129 0.609151 TACCGGCTCCGTGAAAATCA 59.391 50.000 0.00 0.00 37.81 2.57
3539 4130 1.134907 TCTACCGGCTCCGTGAAAATC 60.135 52.381 0.00 0.00 37.81 2.17
3540 4131 0.899720 TCTACCGGCTCCGTGAAAAT 59.100 50.000 0.00 0.00 37.81 1.82
3541 4132 0.899720 ATCTACCGGCTCCGTGAAAA 59.100 50.000 0.00 0.00 37.81 2.29
3542 4133 0.899720 AATCTACCGGCTCCGTGAAA 59.100 50.000 0.00 0.00 37.81 2.69
3543 4134 0.174845 CAATCTACCGGCTCCGTGAA 59.825 55.000 0.00 0.00 37.81 3.18
3544 4135 1.813859 CAATCTACCGGCTCCGTGA 59.186 57.895 0.00 3.38 37.81 4.35
3545 4136 1.883084 GCAATCTACCGGCTCCGTG 60.883 63.158 0.00 0.00 37.81 4.94
3546 4137 2.499685 GCAATCTACCGGCTCCGT 59.500 61.111 0.00 0.00 37.81 4.69
3547 4138 2.280186 GGCAATCTACCGGCTCCG 60.280 66.667 0.00 0.48 39.44 4.63
3554 4145 1.291132 GAGCTGTTCGGCAATCTACC 58.709 55.000 0.00 0.00 34.17 3.18
3555 4146 1.134670 AGGAGCTGTTCGGCAATCTAC 60.135 52.381 0.00 0.00 34.17 2.59
3556 4147 1.195115 AGGAGCTGTTCGGCAATCTA 58.805 50.000 0.00 0.00 34.17 1.98
3557 4148 0.326264 AAGGAGCTGTTCGGCAATCT 59.674 50.000 0.00 0.00 34.17 2.40
3558 4149 1.936547 CTAAGGAGCTGTTCGGCAATC 59.063 52.381 0.00 0.00 34.17 2.67
3559 4150 1.279271 ACTAAGGAGCTGTTCGGCAAT 59.721 47.619 0.00 0.00 34.17 3.56
3560 4151 0.685097 ACTAAGGAGCTGTTCGGCAA 59.315 50.000 0.00 0.00 34.17 4.52
3561 4152 0.246635 GACTAAGGAGCTGTTCGGCA 59.753 55.000 0.00 0.00 34.17 5.69
3562 4153 0.460459 GGACTAAGGAGCTGTTCGGC 60.460 60.000 0.00 0.00 0.00 5.54
3563 4154 0.895530 TGGACTAAGGAGCTGTTCGG 59.104 55.000 0.00 0.00 0.00 4.30
3564 4155 1.546476 AGTGGACTAAGGAGCTGTTCG 59.454 52.381 0.00 0.00 0.00 3.95
3565 4156 2.300437 ACAGTGGACTAAGGAGCTGTTC 59.700 50.000 0.00 0.00 34.02 3.18
3566 4157 2.300437 GACAGTGGACTAAGGAGCTGTT 59.700 50.000 0.00 0.00 37.32 3.16
3567 4158 1.896465 GACAGTGGACTAAGGAGCTGT 59.104 52.381 0.00 0.00 39.51 4.40
3568 4159 1.895798 TGACAGTGGACTAAGGAGCTG 59.104 52.381 0.00 0.00 0.00 4.24
3569 4160 2.310779 TGACAGTGGACTAAGGAGCT 57.689 50.000 0.00 0.00 0.00 4.09
3570 4161 2.419297 CCATGACAGTGGACTAAGGAGC 60.419 54.545 0.00 0.00 42.02 4.70
3571 4162 3.099905 TCCATGACAGTGGACTAAGGAG 58.900 50.000 0.00 0.00 43.20 3.69
3579 4170 2.608623 TCTCTGTTCCATGACAGTGGA 58.391 47.619 12.77 10.08 46.28 4.02
3581 4172 4.129380 TGTTTCTCTGTTCCATGACAGTG 58.871 43.478 12.77 10.96 45.64 3.66
3582 4173 4.101585 TCTGTTTCTCTGTTCCATGACAGT 59.898 41.667 12.77 0.00 45.64 3.55
3594 4185 2.154854 TTCCAGCGTCTGTTTCTCTG 57.845 50.000 6.19 0.00 0.00 3.35
3596 4187 4.691216 ACTAATTTCCAGCGTCTGTTTCTC 59.309 41.667 6.19 0.00 0.00 2.87
3602 4193 6.961554 GTGATTTTACTAATTTCCAGCGTCTG 59.038 38.462 0.52 0.52 0.00 3.51
3603 4194 6.653320 TGTGATTTTACTAATTTCCAGCGTCT 59.347 34.615 0.00 0.00 0.00 4.18
3606 4197 7.081349 TGTTGTGATTTTACTAATTTCCAGCG 58.919 34.615 0.00 0.00 0.00 5.18
3617 4208 6.699575 AGCAAGTTCTGTTGTGATTTTACT 57.300 33.333 0.00 0.00 0.00 2.24
3619 4210 7.497579 TGAGTAGCAAGTTCTGTTGTGATTTTA 59.502 33.333 0.00 0.00 0.00 1.52
3620 4211 6.318648 TGAGTAGCAAGTTCTGTTGTGATTTT 59.681 34.615 0.00 0.00 0.00 1.82
3621 4212 5.822519 TGAGTAGCAAGTTCTGTTGTGATTT 59.177 36.000 0.00 0.00 0.00 2.17
3653 4244 9.745018 AACATTCCTTCTCTGAAATTCTCAATA 57.255 29.630 0.00 0.00 32.17 1.90
3655 4246 7.503566 ACAACATTCCTTCTCTGAAATTCTCAA 59.496 33.333 0.00 0.00 32.17 3.02
3678 4269 2.096248 GGGTGTGGTGTCAGAAAACAA 58.904 47.619 0.00 0.00 0.00 2.83
3679 4270 1.004862 TGGGTGTGGTGTCAGAAAACA 59.995 47.619 0.00 0.00 0.00 2.83
3680 4271 1.676006 CTGGGTGTGGTGTCAGAAAAC 59.324 52.381 0.00 0.00 0.00 2.43
3681 4272 1.409521 CCTGGGTGTGGTGTCAGAAAA 60.410 52.381 0.00 0.00 0.00 2.29
3683 4274 1.836391 CCTGGGTGTGGTGTCAGAA 59.164 57.895 0.00 0.00 0.00 3.02
3684 4275 2.818169 GCCTGGGTGTGGTGTCAGA 61.818 63.158 0.00 0.00 0.00 3.27
3686 4277 2.382770 AAGCCTGGGTGTGGTGTCA 61.383 57.895 0.00 0.00 0.00 3.58
3687 4278 1.898574 CAAGCCTGGGTGTGGTGTC 60.899 63.158 0.00 0.00 0.00 3.67
3688 4279 2.195683 CAAGCCTGGGTGTGGTGT 59.804 61.111 0.00 0.00 0.00 4.16
3689 4280 1.455587 AACAAGCCTGGGTGTGGTG 60.456 57.895 0.00 0.00 0.00 4.17
3690 4281 1.455587 CAACAAGCCTGGGTGTGGT 60.456 57.895 0.00 0.00 0.00 4.16
3691 4282 1.042559 AACAACAAGCCTGGGTGTGG 61.043 55.000 0.00 0.29 0.00 4.17
3692 4283 0.385390 GAACAACAAGCCTGGGTGTG 59.615 55.000 0.00 2.94 0.00 3.82
3693 4284 0.755327 GGAACAACAAGCCTGGGTGT 60.755 55.000 0.00 0.00 0.00 4.16
3702 4293 8.702163 AACAAGAAAAATAGTGGAACAACAAG 57.298 30.769 0.00 0.00 44.16 3.16
3725 4316 2.544267 CTGGACAGTTTTCTCCGTGAAC 59.456 50.000 0.00 0.00 33.88 3.18
3729 4320 0.250338 GGCTGGACAGTTTTCTCCGT 60.250 55.000 0.82 0.00 0.00 4.69
3730 4321 1.291877 CGGCTGGACAGTTTTCTCCG 61.292 60.000 0.82 0.76 0.00 4.63
3731 4322 0.250338 ACGGCTGGACAGTTTTCTCC 60.250 55.000 0.00 0.00 0.00 3.71
3732 4323 1.264288 CAACGGCTGGACAGTTTTCTC 59.736 52.381 0.00 0.00 34.16 2.87
3733 4324 1.308998 CAACGGCTGGACAGTTTTCT 58.691 50.000 0.00 0.00 34.16 2.52
3734 4325 1.021968 ACAACGGCTGGACAGTTTTC 58.978 50.000 0.00 0.00 34.16 2.29
3735 4326 1.404035 GAACAACGGCTGGACAGTTTT 59.596 47.619 0.00 0.00 34.16 2.43
3736 4327 1.021968 GAACAACGGCTGGACAGTTT 58.978 50.000 0.00 0.00 34.16 2.66
3737 4328 0.107410 TGAACAACGGCTGGACAGTT 60.107 50.000 0.00 0.00 37.12 3.16
3739 4330 1.002468 CTTTGAACAACGGCTGGACAG 60.002 52.381 0.00 0.00 0.00 3.51
3740 4331 1.021202 CTTTGAACAACGGCTGGACA 58.979 50.000 0.00 0.00 0.00 4.02
3741 4332 0.310854 CCTTTGAACAACGGCTGGAC 59.689 55.000 0.00 0.00 0.00 4.02
3743 4334 1.659794 CCCTTTGAACAACGGCTGG 59.340 57.895 0.00 0.00 0.00 4.85
3744 4335 1.106944 ACCCCTTTGAACAACGGCTG 61.107 55.000 4.82 0.00 0.00 4.85
3745 4336 0.396556 AACCCCTTTGAACAACGGCT 60.397 50.000 4.82 0.00 0.00 5.52
3762 4369 6.504335 CGCTCACGTAATCGCACATATATAAC 60.504 42.308 0.00 0.00 41.18 1.89
3763 4370 5.510323 CGCTCACGTAATCGCACATATATAA 59.490 40.000 0.00 0.00 41.18 0.98
3764 4371 5.025826 CGCTCACGTAATCGCACATATATA 58.974 41.667 0.00 0.00 41.18 0.86
3765 4372 3.851969 CGCTCACGTAATCGCACATATAT 59.148 43.478 0.00 0.00 41.18 0.86
3780 4387 0.248094 TAGAATCGCAGACGCTCACG 60.248 55.000 0.00 0.00 42.51 4.35
3781 4388 1.192793 GTAGAATCGCAGACGCTCAC 58.807 55.000 0.00 0.00 42.51 3.51
3837 4448 1.002773 ACCCACCGCTTAGTTGTTAGG 59.997 52.381 0.00 0.00 0.00 2.69
3838 4449 2.073816 CACCCACCGCTTAGTTGTTAG 58.926 52.381 0.00 0.00 0.00 2.34
3852 4463 2.830104 ACTACTCGTTTTCACACCCAC 58.170 47.619 0.00 0.00 0.00 4.61
3853 4464 3.547054 AACTACTCGTTTTCACACCCA 57.453 42.857 0.00 0.00 29.63 4.51
3854 4465 3.547413 GCAAACTACTCGTTTTCACACCC 60.547 47.826 0.00 0.00 43.06 4.61
3855 4466 3.547413 GGCAAACTACTCGTTTTCACACC 60.547 47.826 0.00 0.00 43.06 4.16
3856 4467 3.614588 GGCAAACTACTCGTTTTCACAC 58.385 45.455 0.00 0.00 43.06 3.82
3857 4468 2.285756 CGGCAAACTACTCGTTTTCACA 59.714 45.455 0.00 0.00 43.06 3.58
3858 4469 2.349155 CCGGCAAACTACTCGTTTTCAC 60.349 50.000 0.00 0.00 43.06 3.18
3859 4470 1.868498 CCGGCAAACTACTCGTTTTCA 59.132 47.619 0.00 0.00 43.06 2.69
3860 4471 1.399343 GCCGGCAAACTACTCGTTTTC 60.399 52.381 24.80 0.00 43.06 2.29
3861 4472 0.589708 GCCGGCAAACTACTCGTTTT 59.410 50.000 24.80 0.00 43.06 2.43
3862 4473 0.250166 AGCCGGCAAACTACTCGTTT 60.250 50.000 31.54 0.00 46.41 3.60
3863 4474 0.949105 CAGCCGGCAAACTACTCGTT 60.949 55.000 31.54 0.00 37.47 3.85
3864 4475 1.374252 CAGCCGGCAAACTACTCGT 60.374 57.895 31.54 0.00 0.00 4.18
3865 4476 2.100631 CCAGCCGGCAAACTACTCG 61.101 63.158 31.54 4.58 0.00 4.18
3866 4477 1.745489 CCCAGCCGGCAAACTACTC 60.745 63.158 31.54 0.00 0.00 2.59
3867 4478 2.351276 CCCAGCCGGCAAACTACT 59.649 61.111 31.54 1.71 0.00 2.57
3876 4487 3.164269 ATGGACTAGCCCAGCCGG 61.164 66.667 3.49 0.00 39.97 6.13
3877 4488 2.423446 GATGGACTAGCCCAGCCG 59.577 66.667 1.20 0.00 39.97 5.52
3878 4489 2.134287 TCGATGGACTAGCCCAGCC 61.134 63.158 7.82 0.00 39.32 4.85
3879 4490 1.068250 GTCGATGGACTAGCCCAGC 59.932 63.158 2.80 2.80 39.97 4.85
3880 4491 0.757188 AGGTCGATGGACTAGCCCAG 60.757 60.000 3.49 0.00 42.97 4.45
3881 4492 0.554305 TAGGTCGATGGACTAGCCCA 59.446 55.000 0.00 0.00 42.97 5.36
3882 4493 0.960286 GTAGGTCGATGGACTAGCCC 59.040 60.000 7.84 0.00 42.97 5.19
3883 4494 1.609555 CTGTAGGTCGATGGACTAGCC 59.390 57.143 7.84 0.00 42.97 3.93
3884 4495 1.001158 GCTGTAGGTCGATGGACTAGC 60.001 57.143 7.84 8.91 42.97 3.42
3885 4496 1.609555 GGCTGTAGGTCGATGGACTAG 59.390 57.143 7.84 3.40 42.97 2.57
3886 4497 1.688772 GGCTGTAGGTCGATGGACTA 58.311 55.000 7.84 0.00 42.97 2.59
3887 4498 2.506065 GGCTGTAGGTCGATGGACT 58.494 57.895 7.84 0.00 42.97 3.85
3894 4505 4.814294 GGTGGCGGCTGTAGGTCG 62.814 72.222 11.43 0.00 46.93 4.79
3895 4506 2.056223 TAGGTGGCGGCTGTAGGTC 61.056 63.158 11.43 0.00 0.00 3.85
3896 4507 2.038329 TAGGTGGCGGCTGTAGGT 59.962 61.111 11.43 0.00 0.00 3.08
3897 4508 2.499685 GTAGGTGGCGGCTGTAGG 59.500 66.667 11.43 0.00 0.00 3.18
3898 4509 2.499685 GGTAGGTGGCGGCTGTAG 59.500 66.667 11.43 0.00 0.00 2.74
3899 4510 2.227494 TAGGGTAGGTGGCGGCTGTA 62.227 60.000 11.43 0.00 0.00 2.74
3900 4511 3.612115 TAGGGTAGGTGGCGGCTGT 62.612 63.158 11.43 0.00 0.00 4.40
3901 4512 1.906105 TTTAGGGTAGGTGGCGGCTG 61.906 60.000 11.43 0.00 0.00 4.85
3902 4513 1.202769 TTTTAGGGTAGGTGGCGGCT 61.203 55.000 11.43 0.00 0.00 5.52
3903 4514 0.322726 TTTTTAGGGTAGGTGGCGGC 60.323 55.000 0.00 0.00 0.00 6.53
3904 4515 1.003928 ACTTTTTAGGGTAGGTGGCGG 59.996 52.381 0.00 0.00 0.00 6.13
3905 4516 2.484742 ACTTTTTAGGGTAGGTGGCG 57.515 50.000 0.00 0.00 0.00 5.69
3916 4527 6.879993 GGAGGAGAGAAACCCTAACTTTTTAG 59.120 42.308 0.00 0.00 35.35 1.85
3917 4528 6.240089 GGGAGGAGAGAAACCCTAACTTTTTA 60.240 42.308 0.00 0.00 39.28 1.52
3918 4529 5.457778 GGGAGGAGAGAAACCCTAACTTTTT 60.458 44.000 0.00 0.00 39.28 1.94
3919 4530 4.043059 GGGAGGAGAGAAACCCTAACTTTT 59.957 45.833 0.00 0.00 39.28 2.27
3920 4531 3.587951 GGGAGGAGAGAAACCCTAACTTT 59.412 47.826 0.00 0.00 39.28 2.66
3921 4532 3.182976 GGGAGGAGAGAAACCCTAACTT 58.817 50.000 0.00 0.00 39.28 2.66
3922 4533 2.835389 GGGAGGAGAGAAACCCTAACT 58.165 52.381 0.00 0.00 39.28 2.24
3923 4534 1.481363 CGGGAGGAGAGAAACCCTAAC 59.519 57.143 0.00 0.00 40.12 2.34
3924 4535 1.861982 CGGGAGGAGAGAAACCCTAA 58.138 55.000 0.00 0.00 40.12 2.69
3925 4536 0.686769 GCGGGAGGAGAGAAACCCTA 60.687 60.000 0.00 0.00 40.12 3.53
3926 4537 1.990614 GCGGGAGGAGAGAAACCCT 60.991 63.158 0.00 0.00 40.12 4.34
3927 4538 2.585153 GCGGGAGGAGAGAAACCC 59.415 66.667 0.00 0.00 39.02 4.11
3928 4539 2.585153 GGCGGGAGGAGAGAAACC 59.415 66.667 0.00 0.00 0.00 3.27
3929 4540 2.184579 CGGCGGGAGGAGAGAAAC 59.815 66.667 0.00 0.00 0.00 2.78
3930 4541 3.771160 GCGGCGGGAGGAGAGAAA 61.771 66.667 9.78 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.