Multiple sequence alignment - TraesCS4D01G095000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G095000 chr4D 100.000 9777 0 0 1 9777 70360092 70350316 0.000000e+00 18055.0
1 TraesCS4D01G095000 chr4D 82.932 498 73 10 6759 7252 70353124 70352635 1.170000e-118 438.0
2 TraesCS4D01G095000 chr4D 82.932 498 73 10 6969 7458 70353334 70352841 1.170000e-118 438.0
3 TraesCS4D01G095000 chr4D 95.588 204 5 2 5691 5891 70354201 70353999 3.410000e-84 324.0
4 TraesCS4D01G095000 chr4D 95.588 204 5 2 5892 6094 70354402 70354202 3.410000e-84 324.0
5 TraesCS4D01G095000 chr4D 95.333 150 5 2 9400 9548 6633594 6633446 4.560000e-58 237.0
6 TraesCS4D01G095000 chr4D 100.000 28 0 0 6171 6198 7186804 7186777 1.800000e-02 52.8
7 TraesCS4D01G095000 chr4A 96.680 3765 74 15 5586 9312 523450274 523446523 0.000000e+00 6213.0
8 TraesCS4D01G095000 chr4A 96.036 2018 64 11 2804 4813 523454075 523452066 0.000000e+00 3269.0
9 TraesCS4D01G095000 chr4A 95.431 1707 35 13 1076 2756 523455770 523454081 0.000000e+00 2680.0
10 TraesCS4D01G095000 chr4A 86.701 767 61 32 27 786 523456766 523456034 0.000000e+00 813.0
11 TraesCS4D01G095000 chr4A 92.424 462 31 4 9319 9777 523446321 523445861 0.000000e+00 656.0
12 TraesCS4D01G095000 chr4A 83.133 498 71 11 6969 7458 523449078 523448586 9.010000e-120 442.0
13 TraesCS4D01G095000 chr4A 82.294 497 76 10 6759 7252 523448868 523448381 4.220000e-113 420.0
14 TraesCS4D01G095000 chr4A 98.238 227 3 1 4813 5038 523450522 523450296 7.120000e-106 396.0
15 TraesCS4D01G095000 chr4A 93.750 208 5 6 5691 5891 523449967 523449761 1.230000e-78 305.0
16 TraesCS4D01G095000 chr4A 93.659 205 8 2 5892 6094 523450169 523449968 1.600000e-77 302.0
17 TraesCS4D01G095000 chr4A 94.690 113 6 0 866 978 523455962 523455850 1.010000e-39 176.0
18 TraesCS4D01G095000 chr4A 91.045 67 4 2 9077 9143 724588091 724588027 1.350000e-13 89.8
19 TraesCS4D01G095000 chr4A 89.552 67 5 2 9077 9143 724679559 724679495 6.290000e-12 84.2
20 TraesCS4D01G095000 chr4B 94.426 2781 119 19 6232 8984 104315415 104312643 0.000000e+00 4244.0
21 TraesCS4D01G095000 chr4B 93.593 2794 117 22 2910 5679 104335172 104332417 0.000000e+00 4111.0
22 TraesCS4D01G095000 chr4B 90.482 851 46 20 235 1079 104337225 104336404 0.000000e+00 1090.0
23 TraesCS4D01G095000 chr4B 90.890 483 31 7 1076 1546 104336439 104335958 3.850000e-178 636.0
24 TraesCS4D01G095000 chr4B 86.643 569 36 13 1788 2347 104335866 104335329 2.350000e-165 593.0
25 TraesCS4D01G095000 chr4B 83.768 499 67 12 6969 7458 104314877 104314384 2.490000e-125 460.0
26 TraesCS4D01G095000 chr4B 83.000 500 70 10 6759 7253 104314668 104314179 1.170000e-118 438.0
27 TraesCS4D01G095000 chr4B 81.560 423 40 15 8985 9402 104312226 104311837 2.050000e-81 315.0
28 TraesCS4D01G095000 chr4B 92.381 210 14 2 5993 6201 104332303 104332095 2.060000e-76 298.0
29 TraesCS4D01G095000 chr4B 95.333 150 5 2 9400 9548 209249209 209249357 4.560000e-58 237.0
30 TraesCS4D01G095000 chr4B 81.116 233 15 15 9546 9776 104311778 104311573 1.020000e-34 159.0
31 TraesCS4D01G095000 chr4B 88.321 137 10 4 2396 2526 104335329 104335193 1.020000e-34 159.0
32 TraesCS4D01G095000 chr4B 93.750 96 6 0 5796 5891 104332297 104332202 2.850000e-30 145.0
33 TraesCS4D01G095000 chr4B 100.000 71 0 0 7 77 104337483 104337413 2.220000e-26 132.0
34 TraesCS4D01G095000 chr4B 98.551 69 1 0 76 144 104337331 104337263 1.330000e-23 122.0
35 TraesCS4D01G095000 chr4B 98.182 55 0 1 9080 9134 454926650 454926597 2.910000e-15 95.3
36 TraesCS4D01G095000 chr4B 96.000 50 2 0 5937 5986 104332408 104332359 2.260000e-11 82.4
37 TraesCS4D01G095000 chr4B 96.000 50 2 0 5737 5786 104332408 104332359 2.260000e-11 82.4
38 TraesCS4D01G095000 chr4B 97.143 35 1 0 165 199 104337257 104337223 1.060000e-04 60.2
39 TraesCS4D01G095000 chr4B 100.000 32 0 0 9567 9598 644830392 644830423 1.060000e-04 60.2
40 TraesCS4D01G095000 chrUn 95.333 150 5 2 9400 9548 186169491 186169639 4.560000e-58 237.0
41 TraesCS4D01G095000 chrUn 95.333 150 5 2 9400 9548 247562387 247562239 4.560000e-58 237.0
42 TraesCS4D01G095000 chrUn 95.333 150 5 2 9400 9548 404402468 404402320 4.560000e-58 237.0
43 TraesCS4D01G095000 chrUn 95.333 150 5 2 9400 9548 438678499 438678351 4.560000e-58 237.0
44 TraesCS4D01G095000 chr2B 76.078 510 90 27 3762 4252 583413228 583413724 4.560000e-58 237.0
45 TraesCS4D01G095000 chr2B 83.740 123 17 3 1130 1252 583410707 583410826 8.030000e-21 113.0
46 TraesCS4D01G095000 chr2B 86.364 66 7 2 9243 9306 733090323 733090258 4.900000e-08 71.3
47 TraesCS4D01G095000 chr2B 95.455 44 1 1 5689 5732 775170245 775170287 1.760000e-07 69.4
48 TraesCS4D01G095000 chr1A 95.333 150 5 2 9400 9548 94613618 94613470 4.560000e-58 237.0
49 TraesCS4D01G095000 chr1A 95.333 150 5 2 9400 9548 94693072 94693220 4.560000e-58 237.0
50 TraesCS4D01G095000 chr1A 91.667 48 2 1 5892 5937 517095964 517095917 2.280000e-06 65.8
51 TraesCS4D01G095000 chr5D 83.117 154 20 5 9160 9309 341262564 341262413 1.710000e-27 135.0
52 TraesCS4D01G095000 chr5D 79.487 117 18 4 6116 6227 283490125 283490240 2.930000e-10 78.7
53 TraesCS4D01G095000 chr2A 84.553 123 16 3 1130 1252 641392478 641392597 1.720000e-22 119.0
54 TraesCS4D01G095000 chr2A 78.261 115 19 6 9198 9308 532046288 532046176 1.760000e-07 69.4
55 TraesCS4D01G095000 chr2D 83.740 123 17 3 1130 1252 495779248 495779367 8.030000e-21 113.0
56 TraesCS4D01G095000 chr2D 100.000 28 0 0 6171 6198 599155545 599155518 1.800000e-02 52.8
57 TraesCS4D01G095000 chr7A 84.946 93 14 0 9309 9401 156102237 156102329 2.910000e-15 95.3
58 TraesCS4D01G095000 chr7A 93.333 45 2 1 5700 5744 78138200 78138157 2.280000e-06 65.8
59 TraesCS4D01G095000 chr7B 83.516 91 15 0 9311 9401 384192905 384192815 1.750000e-12 86.1
60 TraesCS4D01G095000 chr7B 83.333 90 15 0 9312 9401 27958890 27958801 6.290000e-12 84.2
61 TraesCS4D01G095000 chr7B 85.915 71 9 1 9237 9306 144113170 144113240 3.790000e-09 75.0
62 TraesCS4D01G095000 chr6A 82.979 94 14 2 9309 9401 554782029 554782121 6.290000e-12 84.2
63 TraesCS4D01G095000 chr6A 82.609 92 16 0 9310 9401 61042329 61042238 2.260000e-11 82.4
64 TraesCS4D01G095000 chr6A 91.837 49 3 1 5689 5737 158047835 158047788 6.340000e-07 67.6
65 TraesCS4D01G095000 chr7D 89.231 65 6 1 9245 9308 42060470 42060534 8.140000e-11 80.5
66 TraesCS4D01G095000 chr7D 82.418 91 16 0 9311 9401 388996218 388996128 8.140000e-11 80.5
67 TraesCS4D01G095000 chr7D 93.182 44 3 0 5689 5732 217384874 217384917 2.280000e-06 65.8
68 TraesCS4D01G095000 chr5A 86.486 74 9 1 9237 9309 589002191 589002264 8.140000e-11 80.5
69 TraesCS4D01G095000 chr5A 80.645 93 18 0 9309 9401 534256163 534256071 1.360000e-08 73.1
70 TraesCS4D01G095000 chr5A 97.561 41 1 0 5892 5932 453002690 453002730 4.900000e-08 71.3
71 TraesCS4D01G095000 chr5A 95.238 42 2 0 5893 5934 705145094 705145053 6.340000e-07 67.6
72 TraesCS4D01G095000 chr5B 86.111 72 8 2 9237 9306 315942395 315942466 1.050000e-09 76.8
73 TraesCS4D01G095000 chr5B 81.250 96 14 4 9309 9402 506971562 506971469 3.790000e-09 75.0
74 TraesCS4D01G095000 chr5B 77.778 117 20 4 6116 6227 321621216 321621331 6.340000e-07 67.6
75 TraesCS4D01G095000 chr3A 85.135 74 10 1 9237 9309 741621826 741621899 3.790000e-09 75.0
76 TraesCS4D01G095000 chr3A 87.719 57 5 2 9081 9137 468615300 468615354 2.280000e-06 65.8
77 TraesCS4D01G095000 chr6D 93.182 44 3 0 5892 5935 35626776 35626733 2.280000e-06 65.8
78 TraesCS4D01G095000 chr6B 91.667 48 3 1 5689 5736 217159061 217159107 2.280000e-06 65.8
79 TraesCS4D01G095000 chr6B 95.122 41 2 0 5892 5932 229522255 229522215 2.280000e-06 65.8
80 TraesCS4D01G095000 chr1B 100.000 35 0 0 5892 5926 325271770 325271804 2.280000e-06 65.8
81 TraesCS4D01G095000 chr1B 95.000 40 2 0 5695 5734 94188671 94188632 8.200000e-06 63.9
82 TraesCS4D01G095000 chr3D 100.000 30 0 0 6131 6160 105453077 105453106 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G095000 chr4D 70350316 70360092 9776 True 18055.000000 18055 100.000000 1 9777 1 chr4D.!!$R3 9776
1 TraesCS4D01G095000 chr4D 70352635 70354402 1767 True 381.000000 438 89.260000 5691 7458 4 chr4D.!!$R4 1767
2 TraesCS4D01G095000 chr4A 523445861 523456766 10905 True 1424.727273 6213 92.094182 27 9777 11 chr4A.!!$R3 9750
3 TraesCS4D01G095000 chr4B 104311573 104315415 3842 True 1123.200000 4244 84.774000 6232 9776 5 chr4B.!!$R2 3544
4 TraesCS4D01G095000 chr4B 104332095 104337483 5388 True 625.916667 4111 93.646167 7 6201 12 chr4B.!!$R3 6194

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
869 982 0.242825 TTCTGCTTCTCCCGTACACG 59.757 55.000 0.00 0.00 39.44 4.49 F
1058 1171 0.107066 CCTATGGCCATCTGTGCACA 60.107 55.000 24.80 20.37 0.00 4.57 F
1067 1180 0.250597 ATCTGTGCACAGCAAGAGCA 60.251 50.000 36.76 21.21 45.49 4.26 F
1391 1519 0.608308 GATTATAAGTGCCCGGGCCC 60.608 60.000 41.75 32.64 41.09 5.80 F
1779 1928 1.139163 GTGCAGCCGTTCCAAAAATG 58.861 50.000 0.00 0.00 0.00 2.32 F
3092 3273 1.153549 CTCACGCCTTACTCCAGCC 60.154 63.158 0.00 0.00 0.00 4.85 F
3606 3790 0.378610 GCCTCCTGCGCAAAGATAAC 59.621 55.000 13.05 0.25 0.00 1.89 F
5233 6980 0.741221 GCTTCGCTTACCACTCCAGG 60.741 60.000 0.00 0.00 0.00 4.45 F
5897 7906 0.102663 GTAGGGACGGCTAGAACTGC 59.897 60.000 0.00 0.00 0.00 4.40 F
5982 7991 0.764890 AGGCACCTAACACTGAGCAA 59.235 50.000 0.00 0.00 0.00 3.91 F
5983 7992 1.352352 AGGCACCTAACACTGAGCAAT 59.648 47.619 0.00 0.00 0.00 3.56 F
7829 9873 2.095212 GGAAACCTTGAAGACCGCATTC 60.095 50.000 0.00 0.00 0.00 2.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1820 1969 0.941542 GCACGGTACAAGTCTGCAAA 59.058 50.000 0.00 0.00 0.00 3.68 R
2731 2909 0.961019 GGCAGGTGCAACATTTCTCA 59.039 50.000 3.64 0.00 44.36 3.27 R
2863 3041 1.269517 GCTCTCATGACCTAGGAAGCG 60.270 57.143 17.98 0.96 0.00 4.68 R
3044 3225 2.293170 TGCATGGTTCTCGAACAAACA 58.707 42.857 11.47 0.00 42.85 2.83 R
3606 3790 3.952323 AGCATGTCATGGAGAAAATGGAG 59.048 43.478 14.64 0.00 0.00 3.86 R
4157 4341 2.752903 GGTGCAAAACCGTATCCATCTT 59.247 45.455 0.00 0.00 39.81 2.40 R
5504 7252 0.178958 CTAGGTCCGCCATACTCCCT 60.179 60.000 0.00 0.00 37.19 4.20 R
6081 8090 3.056607 TGTTTGTAAGTAGCCGTCCCTAC 60.057 47.826 0.00 0.00 38.34 3.18 R
7883 9927 1.009675 GTGCACAGCAAACCTCACG 60.010 57.895 13.17 0.00 41.47 4.35 R
7945 9989 2.125147 TTGCAAGGCCGGAGATCG 60.125 61.111 5.05 0.00 38.88 3.69 R
8057 10101 4.979204 CGTGTACGGAAGCCTTGA 57.021 55.556 0.00 0.00 35.37 3.02 R
9315 11792 0.034089 AAGGACCAATGCCCTGTAGC 60.034 55.000 0.00 0.00 32.12 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
145 246 5.358442 TCATGAGTTGAGACTAACTAGAGGC 59.642 44.000 0.00 0.00 40.78 4.70
146 247 4.924625 TGAGTTGAGACTAACTAGAGGCT 58.075 43.478 0.00 0.00 40.78 4.58
147 248 5.326069 TGAGTTGAGACTAACTAGAGGCTT 58.674 41.667 0.00 0.00 40.78 4.35
148 249 5.416326 TGAGTTGAGACTAACTAGAGGCTTC 59.584 44.000 0.00 0.00 40.78 3.86
149 250 5.326069 AGTTGAGACTAACTAGAGGCTTCA 58.674 41.667 0.00 0.00 39.03 3.02
150 251 5.417580 AGTTGAGACTAACTAGAGGCTTCAG 59.582 44.000 0.00 0.00 39.03 3.02
151 252 4.274147 TGAGACTAACTAGAGGCTTCAGG 58.726 47.826 0.00 0.00 33.76 3.86
152 253 3.028130 AGACTAACTAGAGGCTTCAGGC 58.972 50.000 0.00 0.00 41.43 4.85
162 263 1.604604 GGCTTCAGGCTTGTACAACA 58.395 50.000 3.59 0.00 41.46 3.33
163 264 1.953686 GGCTTCAGGCTTGTACAACAA 59.046 47.619 3.59 0.00 41.46 2.83
167 268 2.294074 TCAGGCTTGTACAACAACACC 58.706 47.619 3.59 1.81 33.96 4.16
235 336 2.879002 CTCCGCTAGCAGATTCTCAA 57.121 50.000 16.45 0.00 0.00 3.02
303 404 2.490168 GCAAAACCCTAGTTTCCCCTCA 60.490 50.000 0.00 0.00 45.54 3.86
315 416 1.074951 CCCCTCACCCTTGTTCCAC 59.925 63.158 0.00 0.00 0.00 4.02
330 431 2.445845 CACCCCCTAGATCCGCCA 60.446 66.667 0.00 0.00 0.00 5.69
536 637 2.655364 CGCTCGCGTCCATCGATT 60.655 61.111 5.77 0.00 42.86 3.34
558 659 3.011517 AGAGGGGTTGATGCGGCT 61.012 61.111 0.00 0.00 0.00 5.52
620 721 3.661648 GGGATGGTGGTGTGGCCT 61.662 66.667 3.32 0.00 38.35 5.19
621 722 2.044946 GGATGGTGGTGTGGCCTC 60.045 66.667 3.32 0.00 38.35 4.70
622 723 2.606587 GGATGGTGGTGTGGCCTCT 61.607 63.158 3.32 0.00 38.35 3.69
624 725 1.539869 ATGGTGGTGTGGCCTCTCT 60.540 57.895 3.32 0.00 38.35 3.10
625 726 1.557269 ATGGTGGTGTGGCCTCTCTC 61.557 60.000 3.32 0.00 38.35 3.20
626 727 1.915769 GGTGGTGTGGCCTCTCTCT 60.916 63.158 3.32 0.00 38.35 3.10
627 728 1.594310 GTGGTGTGGCCTCTCTCTC 59.406 63.158 3.32 0.00 38.35 3.20
628 729 0.902516 GTGGTGTGGCCTCTCTCTCT 60.903 60.000 3.32 0.00 38.35 3.10
629 730 0.613292 TGGTGTGGCCTCTCTCTCTC 60.613 60.000 3.32 0.00 38.35 3.20
630 731 0.324275 GGTGTGGCCTCTCTCTCTCT 60.324 60.000 3.32 0.00 0.00 3.10
631 732 1.102978 GTGTGGCCTCTCTCTCTCTC 58.897 60.000 3.32 0.00 0.00 3.20
632 733 0.998928 TGTGGCCTCTCTCTCTCTCT 59.001 55.000 3.32 0.00 0.00 3.10
633 734 1.064758 TGTGGCCTCTCTCTCTCTCTC 60.065 57.143 3.32 0.00 0.00 3.20
634 735 1.212935 GTGGCCTCTCTCTCTCTCTCT 59.787 57.143 3.32 0.00 0.00 3.10
635 736 1.490490 TGGCCTCTCTCTCTCTCTCTC 59.510 57.143 3.32 0.00 0.00 3.20
636 737 1.771255 GGCCTCTCTCTCTCTCTCTCT 59.229 57.143 0.00 0.00 0.00 3.10
639 740 3.494048 GCCTCTCTCTCTCTCTCTCTCTG 60.494 56.522 0.00 0.00 0.00 3.35
649 750 4.160439 TCTCTCTCTCTCTGTCTCTCTGTC 59.840 50.000 0.00 0.00 0.00 3.51
651 752 4.532126 TCTCTCTCTCTGTCTCTCTGTCTT 59.468 45.833 0.00 0.00 0.00 3.01
734 844 4.100344 ACACCGAAAATATTAAATGGGCCC 59.900 41.667 17.59 17.59 0.00 5.80
739 849 2.215942 ATATTAAATGGGCCCGGCTC 57.784 50.000 19.37 5.65 0.00 4.70
783 894 2.368221 CTCTCTCTCATTTAGGCCCAGG 59.632 54.545 0.00 0.00 0.00 4.45
795 906 3.089874 CCCAGGCCGATCCCTCAA 61.090 66.667 0.00 0.00 31.24 3.02
796 907 2.679342 CCCAGGCCGATCCCTCAAA 61.679 63.158 0.00 0.00 31.24 2.69
797 908 1.302949 CCAGGCCGATCCCTCAAAA 59.697 57.895 0.00 0.00 31.24 2.44
798 909 0.323360 CCAGGCCGATCCCTCAAAAA 60.323 55.000 0.00 0.00 31.24 1.94
830 941 1.135333 GCCCCGTTTACTCTCTCTCTG 59.865 57.143 0.00 0.00 0.00 3.35
842 953 2.639839 TCTCTCTCTGTTTTTCCCCTGG 59.360 50.000 0.00 0.00 0.00 4.45
843 954 2.639839 CTCTCTCTGTTTTTCCCCTGGA 59.360 50.000 0.00 0.00 0.00 3.86
844 955 3.053077 TCTCTCTGTTTTTCCCCTGGAA 58.947 45.455 0.00 0.00 40.27 3.53
845 956 3.073062 TCTCTCTGTTTTTCCCCTGGAAG 59.927 47.826 0.00 0.00 43.06 3.46
869 982 0.242825 TTCTGCTTCTCCCGTACACG 59.757 55.000 0.00 0.00 39.44 4.49
1051 1164 1.566211 CTCCGATCCTATGGCCATCT 58.434 55.000 24.80 1.70 0.00 2.90
1053 1166 0.979665 CCGATCCTATGGCCATCTGT 59.020 55.000 24.80 7.05 0.00 3.41
1054 1167 1.338484 CCGATCCTATGGCCATCTGTG 60.338 57.143 24.80 11.03 0.00 3.66
1055 1168 1.818642 GATCCTATGGCCATCTGTGC 58.181 55.000 24.80 6.79 0.00 4.57
1056 1169 1.072806 GATCCTATGGCCATCTGTGCA 59.927 52.381 24.80 1.72 0.00 4.57
1057 1170 0.181114 TCCTATGGCCATCTGTGCAC 59.819 55.000 24.80 10.75 0.00 4.57
1058 1171 0.107066 CCTATGGCCATCTGTGCACA 60.107 55.000 24.80 20.37 0.00 4.57
1059 1172 1.306148 CTATGGCCATCTGTGCACAG 58.694 55.000 36.07 36.07 45.08 3.66
1060 1173 0.749091 TATGGCCATCTGTGCACAGC 60.749 55.000 36.76 27.14 43.46 4.40
1061 1174 2.674033 GGCCATCTGTGCACAGCA 60.674 61.111 36.76 26.37 43.46 4.41
1062 1175 2.270257 GGCCATCTGTGCACAGCAA 61.270 57.895 36.76 24.04 41.47 3.91
1063 1176 1.211969 GCCATCTGTGCACAGCAAG 59.788 57.895 36.76 27.14 41.47 4.01
1064 1177 1.239296 GCCATCTGTGCACAGCAAGA 61.239 55.000 36.76 23.14 41.47 3.02
1067 1180 0.250597 ATCTGTGCACAGCAAGAGCA 60.251 50.000 36.76 21.21 45.49 4.26
1068 1181 0.250597 TCTGTGCACAGCAAGAGCAT 60.251 50.000 36.76 0.00 45.47 3.79
1070 1183 1.211969 GTGCACAGCAAGAGCATGG 59.788 57.895 13.17 0.00 45.47 3.66
1071 1184 1.974875 TGCACAGCAAGAGCATGGG 60.975 57.895 0.00 0.00 45.49 4.00
1072 1185 1.975407 GCACAGCAAGAGCATGGGT 60.975 57.895 0.00 0.00 45.49 4.51
1073 1186 1.880894 CACAGCAAGAGCATGGGTG 59.119 57.895 0.00 0.00 45.49 4.61
1074 1187 0.892358 CACAGCAAGAGCATGGGTGT 60.892 55.000 0.00 0.00 45.49 4.16
1113 1235 2.943265 AGCATGGGGGTTGGCTCT 60.943 61.111 0.00 0.00 28.71 4.09
1120 1242 0.694444 GGGGGTTGGCTCTGATCCTA 60.694 60.000 0.00 0.00 0.00 2.94
1131 1253 4.013050 GCTCTGATCCTAATAATTGGGCC 58.987 47.826 0.00 0.00 0.00 5.80
1258 1380 2.970324 CCGGTTGACACCACCGTG 60.970 66.667 15.67 5.65 44.53 4.94
1293 1419 5.551583 TGGTATATATCCACATCCTGCCTTT 59.448 40.000 0.00 0.00 0.00 3.11
1313 1439 2.649531 TTCAACCAACTCCCGACATT 57.350 45.000 0.00 0.00 0.00 2.71
1391 1519 0.608308 GATTATAAGTGCCCGGGCCC 60.608 60.000 41.75 32.64 41.09 5.80
1417 1546 2.724977 TCTAGTGTTTGGAGACGCTG 57.275 50.000 1.66 0.00 40.37 5.18
1559 1707 6.149308 CCCTTGGCATATTTTTGTTTTCCTTC 59.851 38.462 0.00 0.00 0.00 3.46
1779 1928 1.139163 GTGCAGCCGTTCCAAAAATG 58.861 50.000 0.00 0.00 0.00 2.32
1820 1969 8.799367 GTTCAGTATAAAAATAGGTTTGGGTGT 58.201 33.333 0.00 0.00 0.00 4.16
1911 2062 7.065683 TGTGGTACTCATTATGCAATTACAGTG 59.934 37.037 0.00 0.00 0.00 3.66
1934 2085 3.007182 TGACCACCGAAAGTAGTAAAGGG 59.993 47.826 0.00 0.00 0.00 3.95
2053 2205 5.957796 GCTAATCTTGTTTCGAAACGTATGG 59.042 40.000 30.05 18.69 41.74 2.74
2163 2315 4.597507 TGTCCTGTCCTTTTTATCTGACCT 59.402 41.667 0.00 0.00 0.00 3.85
2164 2316 5.073144 TGTCCTGTCCTTTTTATCTGACCTT 59.927 40.000 0.00 0.00 0.00 3.50
2165 2317 5.644206 GTCCTGTCCTTTTTATCTGACCTTC 59.356 44.000 0.00 0.00 0.00 3.46
2166 2318 5.309543 TCCTGTCCTTTTTATCTGACCTTCA 59.690 40.000 0.00 0.00 0.00 3.02
2167 2319 5.645497 CCTGTCCTTTTTATCTGACCTTCAG 59.355 44.000 0.00 0.00 45.59 3.02
2281 2438 9.043079 GGTTAAATTTCTAGTCCTCTTATTCCG 57.957 37.037 0.00 0.00 0.00 4.30
2326 2483 6.429385 CCACTGAATCAAATATAGGAAGGCTC 59.571 42.308 0.00 0.00 0.00 4.70
2442 2599 4.444876 GCTTGTGCCTTCCCTGAATATCTA 60.445 45.833 0.00 0.00 0.00 1.98
2680 2858 5.235186 ACATTAATGATCACGAGCTTGCTAC 59.765 40.000 22.16 0.00 0.00 3.58
2756 2934 1.473497 ATGTTGCACCTGCCATTGCA 61.473 50.000 0.00 0.00 46.93 4.08
2767 2945 3.957591 TGCCATTGCATATTGTTGTGT 57.042 38.095 0.00 0.00 44.23 3.72
2768 2946 4.268797 TGCCATTGCATATTGTTGTGTT 57.731 36.364 0.00 0.00 44.23 3.32
2769 2947 4.639334 TGCCATTGCATATTGTTGTGTTT 58.361 34.783 0.00 0.00 44.23 2.83
2770 2948 4.451435 TGCCATTGCATATTGTTGTGTTTG 59.549 37.500 0.00 0.00 44.23 2.93
2771 2949 4.669708 GCCATTGCATATTGTTGTGTTTGC 60.670 41.667 0.00 0.00 37.47 3.68
2772 2950 4.142859 CCATTGCATATTGTTGTGTTTGCC 60.143 41.667 0.00 0.00 0.00 4.52
2773 2951 3.740631 TGCATATTGTTGTGTTTGCCA 57.259 38.095 0.00 0.00 0.00 4.92
2774 2952 3.388308 TGCATATTGTTGTGTTTGCCAC 58.612 40.909 0.00 0.00 44.78 5.01
2775 2953 3.069300 TGCATATTGTTGTGTTTGCCACT 59.931 39.130 0.00 0.00 44.81 4.00
2776 2954 4.279420 TGCATATTGTTGTGTTTGCCACTA 59.721 37.500 0.00 0.00 44.81 2.74
2777 2955 5.221322 TGCATATTGTTGTGTTTGCCACTAA 60.221 36.000 0.00 0.00 44.81 2.24
2778 2956 5.868801 GCATATTGTTGTGTTTGCCACTAAT 59.131 36.000 0.00 0.00 44.81 1.73
2779 2957 7.032580 GCATATTGTTGTGTTTGCCACTAATA 58.967 34.615 0.00 0.00 44.81 0.98
2780 2958 7.543868 GCATATTGTTGTGTTTGCCACTAATAA 59.456 33.333 0.00 0.00 44.81 1.40
2781 2959 9.416794 CATATTGTTGTGTTTGCCACTAATAAA 57.583 29.630 0.00 0.00 44.81 1.40
2784 2962 8.804688 TTGTTGTGTTTGCCACTAATAAATAC 57.195 30.769 0.00 0.00 44.81 1.89
2785 2963 7.941919 TGTTGTGTTTGCCACTAATAAATACA 58.058 30.769 0.00 0.00 44.81 2.29
2786 2964 8.580720 TGTTGTGTTTGCCACTAATAAATACAT 58.419 29.630 0.00 0.00 44.81 2.29
2787 2965 8.859156 GTTGTGTTTGCCACTAATAAATACATG 58.141 33.333 0.00 0.00 44.81 3.21
2788 2966 8.116651 TGTGTTTGCCACTAATAAATACATGT 57.883 30.769 2.69 2.69 44.81 3.21
2789 2967 8.240682 TGTGTTTGCCACTAATAAATACATGTC 58.759 33.333 0.00 0.00 44.81 3.06
2790 2968 8.240682 GTGTTTGCCACTAATAAATACATGTCA 58.759 33.333 0.00 0.00 41.11 3.58
2791 2969 8.458052 TGTTTGCCACTAATAAATACATGTCAG 58.542 33.333 0.00 0.00 0.00 3.51
2792 2970 6.618287 TGCCACTAATAAATACATGTCAGC 57.382 37.500 0.00 0.00 0.00 4.26
2793 2971 6.118852 TGCCACTAATAAATACATGTCAGCA 58.881 36.000 0.00 0.00 0.00 4.41
2794 2972 6.601217 TGCCACTAATAAATACATGTCAGCAA 59.399 34.615 0.00 0.00 0.00 3.91
2795 2973 7.285172 TGCCACTAATAAATACATGTCAGCAAT 59.715 33.333 0.00 0.00 0.00 3.56
2796 2974 7.592533 GCCACTAATAAATACATGTCAGCAATG 59.407 37.037 0.00 0.00 0.00 2.82
2797 2975 7.592533 CCACTAATAAATACATGTCAGCAATGC 59.407 37.037 0.00 0.00 0.00 3.56
2798 2976 8.347771 CACTAATAAATACATGTCAGCAATGCT 58.652 33.333 0.00 0.00 40.77 3.79
2799 2977 8.562892 ACTAATAAATACATGTCAGCAATGCTC 58.437 33.333 4.03 0.00 36.40 4.26
2800 2978 7.578310 AATAAATACATGTCAGCAATGCTCT 57.422 32.000 4.03 0.00 36.40 4.09
2801 2979 5.909621 AAATACATGTCAGCAATGCTCTT 57.090 34.783 4.03 0.00 36.40 2.85
2802 2980 5.909621 AATACATGTCAGCAATGCTCTTT 57.090 34.783 4.03 0.00 36.40 2.52
2814 2992 5.655532 AGCAATGCTCTTTATCACTTCCAAT 59.344 36.000 0.00 0.00 30.62 3.16
2836 3014 5.255397 TGGTCAACAGTGGATTTATTCCT 57.745 39.130 0.00 0.00 45.68 3.36
2838 3016 5.010282 GGTCAACAGTGGATTTATTCCTGT 58.990 41.667 0.00 0.00 45.68 4.00
2839 3017 5.106157 GGTCAACAGTGGATTTATTCCTGTG 60.106 44.000 0.00 0.00 45.68 3.66
2840 3018 5.705441 GTCAACAGTGGATTTATTCCTGTGA 59.295 40.000 0.00 0.00 45.68 3.58
2863 3041 8.543774 GTGATGATGCTATGTAACAAACTAGAC 58.456 37.037 0.00 0.00 0.00 2.59
2896 3074 5.098211 GTCATGAGAGCTTGTTTAATTGGC 58.902 41.667 0.00 0.00 0.00 4.52
2958 3139 3.522343 GGGAAACTACCAAGACACCCTAT 59.478 47.826 0.00 0.00 32.86 2.57
3044 3225 4.600111 TGTGGGAAAACTACCAAGATACCT 59.400 41.667 0.00 0.00 38.73 3.08
3092 3273 1.153549 CTCACGCCTTACTCCAGCC 60.154 63.158 0.00 0.00 0.00 4.85
3102 3283 3.282885 CTTACTCCAGCCCCATTCTTTC 58.717 50.000 0.00 0.00 0.00 2.62
3180 3361 4.286032 GCCCCTGGAATAAAGTTTCCTTTT 59.714 41.667 0.00 0.00 44.63 2.27
3321 3502 6.162777 AGCAGATAAAAGTGTCTCTCTGTTC 58.837 40.000 0.00 0.00 34.13 3.18
3352 3533 5.184892 AGCCTATTGTTTCTCATGGTTCT 57.815 39.130 0.00 0.00 0.00 3.01
3606 3790 0.378610 GCCTCCTGCGCAAAGATAAC 59.621 55.000 13.05 0.25 0.00 1.89
3617 3801 5.030936 GCGCAAAGATAACTCCATTTTCTC 58.969 41.667 0.30 0.00 29.27 2.87
3720 3904 2.270434 TCCTAAAGCCCACAGATCCT 57.730 50.000 0.00 0.00 0.00 3.24
3775 3959 5.576447 TGTTTGTGAAAGGACCTTTCTTC 57.424 39.130 35.59 28.90 46.84 2.87
3834 4018 7.998964 CCCTCAATATTAATTCCTTGTAGGTGT 59.001 37.037 0.00 0.00 36.53 4.16
4021 4205 5.126384 TGTGACACACAGATATATCGGAACA 59.874 40.000 18.24 9.70 39.62 3.18
4156 4340 1.601430 GCAAGCTGCTACTCCTAATGC 59.399 52.381 0.90 2.38 40.96 3.56
4157 4341 2.910199 CAAGCTGCTACTCCTAATGCA 58.090 47.619 0.90 0.00 0.00 3.96
4860 6592 8.593945 ACATGGTTTGTTAGGAATGTTGATAT 57.406 30.769 0.00 0.00 33.74 1.63
5140 6887 5.847111 AGTTTTCTTGGTAAAAGGGACAC 57.153 39.130 0.00 0.00 0.00 3.67
5142 6889 7.035876 AAGTTTTCTTGGTAAAAGGGACACCT 61.036 38.462 0.00 0.00 43.64 4.00
5158 6905 6.443792 GGGACACCTTTTACTTGTTTATGTG 58.556 40.000 0.00 0.00 0.00 3.21
5161 6908 6.801575 ACACCTTTTACTTGTTTATGTGTGG 58.198 36.000 0.00 0.00 33.55 4.17
5162 6909 6.183360 ACACCTTTTACTTGTTTATGTGTGGG 60.183 38.462 0.00 0.00 33.55 4.61
5163 6910 5.894964 ACCTTTTACTTGTTTATGTGTGGGT 59.105 36.000 0.00 0.00 0.00 4.51
5164 6911 6.381707 ACCTTTTACTTGTTTATGTGTGGGTT 59.618 34.615 0.00 0.00 0.00 4.11
5165 6912 7.560626 ACCTTTTACTTGTTTATGTGTGGGTTA 59.439 33.333 0.00 0.00 0.00 2.85
5166 6913 8.414778 CCTTTTACTTGTTTATGTGTGGGTTAA 58.585 33.333 0.00 0.00 0.00 2.01
5167 6914 9.240159 CTTTTACTTGTTTATGTGTGGGTTAAC 57.760 33.333 0.00 0.00 0.00 2.01
5168 6915 5.777850 ACTTGTTTATGTGTGGGTTAACC 57.222 39.130 16.85 16.85 40.81 2.85
5169 6916 4.276431 ACTTGTTTATGTGTGGGTTAACCG 59.724 41.667 18.39 1.99 44.64 4.44
5233 6980 0.741221 GCTTCGCTTACCACTCCAGG 60.741 60.000 0.00 0.00 0.00 4.45
5250 6997 1.152881 GGATTAGGCCCTGCTGTGG 60.153 63.158 0.00 0.00 0.00 4.17
5296 7043 3.555527 GGTATCTGACCCTTACCAACC 57.444 52.381 1.27 0.00 43.25 3.77
5297 7044 2.841881 GGTATCTGACCCTTACCAACCA 59.158 50.000 1.27 0.00 43.25 3.67
5349 7096 6.886178 AGGTTAGTGGTACAATGTTATCCT 57.114 37.500 0.00 0.00 44.16 3.24
5352 7099 6.704937 GGTTAGTGGTACAATGTTATCCTAGC 59.295 42.308 0.00 0.00 44.16 3.42
5353 7100 5.950544 AGTGGTACAATGTTATCCTAGCA 57.049 39.130 0.00 0.00 44.16 3.49
5364 7111 8.469200 CAATGTTATCCTAGCAATTTGGAAAGA 58.531 33.333 0.00 0.00 34.31 2.52
5366 7113 9.866655 ATGTTATCCTAGCAATTTGGAAAGATA 57.133 29.630 0.00 0.00 34.31 1.98
5383 7130 8.576442 TGGAAAGATAATTTCTTGTTTGACCTC 58.424 33.333 0.86 0.00 44.09 3.85
5387 7134 8.329203 AGATAATTTCTTGTTTGACCTCAGAC 57.671 34.615 0.00 0.00 0.00 3.51
5411 7158 9.687717 GACGATTGCATTGTTTATTTTATTTGG 57.312 29.630 0.00 0.00 0.00 3.28
5412 7159 9.213799 ACGATTGCATTGTTTATTTTATTTGGT 57.786 25.926 0.00 0.00 0.00 3.67
5481 7229 2.951229 AACCTTCCACGGATGAGTTT 57.049 45.000 0.65 0.00 0.00 2.66
5488 7236 4.561500 TCCACGGATGAGTTTTATCCAA 57.438 40.909 0.00 0.00 43.46 3.53
5504 7252 2.863484 AATCCCACCTGGCCCACA 60.863 61.111 0.00 0.00 0.00 4.17
5517 7265 2.505982 CCACAGGGAGTATGGCGG 59.494 66.667 0.00 0.00 35.59 6.13
5530 7278 0.469917 ATGGCGGACCTAGAACATGG 59.530 55.000 0.00 0.00 36.63 3.66
5557 7305 6.073447 TGGTTGGACATGTTATGGAAGTAT 57.927 37.500 0.00 0.00 33.60 2.12
5573 7321 6.338146 TGGAAGTATAGTATTGATATGCGGC 58.662 40.000 0.00 0.00 0.00 6.53
5741 7694 6.183360 GGAACAGAGGGAGTAGATCTTTAGTG 60.183 46.154 0.00 0.00 0.00 2.74
5887 7896 8.502105 AAAAACTATCATAAAAGTAGGGACGG 57.498 34.615 0.00 0.00 0.00 4.79
5888 7897 5.211174 ACTATCATAAAAGTAGGGACGGC 57.789 43.478 0.00 0.00 0.00 5.68
5889 7898 4.900054 ACTATCATAAAAGTAGGGACGGCT 59.100 41.667 0.00 0.00 0.00 5.52
5890 7899 6.073314 ACTATCATAAAAGTAGGGACGGCTA 58.927 40.000 0.00 0.00 0.00 3.93
5891 7900 4.931661 TCATAAAAGTAGGGACGGCTAG 57.068 45.455 0.00 0.00 0.00 3.42
5892 7901 4.539726 TCATAAAAGTAGGGACGGCTAGA 58.460 43.478 0.00 0.00 0.00 2.43
5893 7902 4.957954 TCATAAAAGTAGGGACGGCTAGAA 59.042 41.667 0.00 0.00 0.00 2.10
5894 7903 3.606595 AAAAGTAGGGACGGCTAGAAC 57.393 47.619 0.00 0.00 0.00 3.01
5895 7904 2.528673 AAGTAGGGACGGCTAGAACT 57.471 50.000 0.00 0.00 0.00 3.01
5896 7905 1.765230 AGTAGGGACGGCTAGAACTG 58.235 55.000 0.00 0.00 0.00 3.16
5897 7906 0.102663 GTAGGGACGGCTAGAACTGC 59.897 60.000 0.00 0.00 0.00 4.40
5898 7907 1.041447 TAGGGACGGCTAGAACTGCC 61.041 60.000 0.00 0.00 46.42 4.85
5908 7917 4.773323 GCTAGAACTGCCAAAACATCTT 57.227 40.909 0.00 0.00 0.00 2.40
5909 7918 5.880054 GCTAGAACTGCCAAAACATCTTA 57.120 39.130 0.00 0.00 0.00 2.10
5910 7919 6.442513 GCTAGAACTGCCAAAACATCTTAT 57.557 37.500 0.00 0.00 0.00 1.73
5911 7920 7.553881 GCTAGAACTGCCAAAACATCTTATA 57.446 36.000 0.00 0.00 0.00 0.98
5912 7921 8.159344 GCTAGAACTGCCAAAACATCTTATAT 57.841 34.615 0.00 0.00 0.00 0.86
5913 7922 8.624776 GCTAGAACTGCCAAAACATCTTATATT 58.375 33.333 0.00 0.00 0.00 1.28
5917 7926 9.736023 GAACTGCCAAAACATCTTATATTTAGG 57.264 33.333 0.00 0.00 0.00 2.69
5918 7927 9.474313 AACTGCCAAAACATCTTATATTTAGGA 57.526 29.630 0.00 0.00 0.00 2.94
5919 7928 9.474313 ACTGCCAAAACATCTTATATTTAGGAA 57.526 29.630 0.00 0.00 0.00 3.36
5920 7929 9.736023 CTGCCAAAACATCTTATATTTAGGAAC 57.264 33.333 0.00 0.00 0.00 3.62
5921 7930 9.249053 TGCCAAAACATCTTATATTTAGGAACA 57.751 29.630 0.00 0.00 0.00 3.18
5922 7931 9.736023 GCCAAAACATCTTATATTTAGGAACAG 57.264 33.333 0.00 0.00 0.00 3.16
5935 7944 9.890915 ATATTTAGGAACAGAGGAAGTAGATCT 57.109 33.333 0.00 0.00 0.00 2.75
5936 7945 8.616799 ATTTAGGAACAGAGGAAGTAGATCTT 57.383 34.615 0.00 0.00 39.32 2.40
5937 7946 8.437274 TTTAGGAACAGAGGAAGTAGATCTTT 57.563 34.615 0.00 0.00 36.40 2.52
5938 7947 9.543231 TTTAGGAACAGAGGAAGTAGATCTTTA 57.457 33.333 0.00 0.00 36.40 1.85
5939 7948 7.654022 AGGAACAGAGGAAGTAGATCTTTAG 57.346 40.000 0.00 0.00 36.40 1.85
5940 7949 7.186268 AGGAACAGAGGAAGTAGATCTTTAGT 58.814 38.462 0.00 0.00 36.40 2.24
5941 7950 7.340999 AGGAACAGAGGAAGTAGATCTTTAGTC 59.659 40.741 0.00 0.00 36.40 2.59
5942 7951 7.122948 GGAACAGAGGAAGTAGATCTTTAGTCA 59.877 40.741 0.00 0.00 36.40 3.41
5943 7952 8.423906 AACAGAGGAAGTAGATCTTTAGTCAA 57.576 34.615 0.00 0.00 36.40 3.18
5944 7953 8.423906 ACAGAGGAAGTAGATCTTTAGTCAAA 57.576 34.615 0.00 0.00 36.40 2.69
5945 7954 8.308207 ACAGAGGAAGTAGATCTTTAGTCAAAC 58.692 37.037 0.00 0.00 36.40 2.93
5946 7955 8.307483 CAGAGGAAGTAGATCTTTAGTCAAACA 58.693 37.037 0.00 0.00 36.40 2.83
5947 7956 9.041354 AGAGGAAGTAGATCTTTAGTCAAACAT 57.959 33.333 0.00 0.00 36.40 2.71
5948 7957 9.092876 GAGGAAGTAGATCTTTAGTCAAACATG 57.907 37.037 0.00 0.00 36.40 3.21
5949 7958 7.550906 AGGAAGTAGATCTTTAGTCAAACATGC 59.449 37.037 0.00 0.00 36.40 4.06
5950 7959 7.334421 GGAAGTAGATCTTTAGTCAAACATGCA 59.666 37.037 0.00 0.00 36.40 3.96
5951 7960 8.798859 AAGTAGATCTTTAGTCAAACATGCAT 57.201 30.769 0.00 0.00 31.57 3.96
5952 7961 8.798859 AGTAGATCTTTAGTCAAACATGCATT 57.201 30.769 0.00 0.00 0.00 3.56
5953 7962 8.887717 AGTAGATCTTTAGTCAAACATGCATTC 58.112 33.333 0.00 0.00 0.00 2.67
5954 7963 7.934855 AGATCTTTAGTCAAACATGCATTCT 57.065 32.000 0.00 0.00 0.00 2.40
5955 7964 8.345724 AGATCTTTAGTCAAACATGCATTCTT 57.654 30.769 0.00 0.00 0.00 2.52
5956 7965 8.457261 AGATCTTTAGTCAAACATGCATTCTTC 58.543 33.333 0.00 0.00 0.00 2.87
5957 7966 7.750229 TCTTTAGTCAAACATGCATTCTTCT 57.250 32.000 0.00 0.00 0.00 2.85
5958 7967 7.810658 TCTTTAGTCAAACATGCATTCTTCTC 58.189 34.615 0.00 0.00 0.00 2.87
5959 7968 6.500684 TTAGTCAAACATGCATTCTTCTCC 57.499 37.500 0.00 0.00 0.00 3.71
5960 7969 4.660168 AGTCAAACATGCATTCTTCTCCT 58.340 39.130 0.00 0.00 0.00 3.69
5961 7970 4.699257 AGTCAAACATGCATTCTTCTCCTC 59.301 41.667 0.00 0.00 0.00 3.71
5962 7971 4.699257 GTCAAACATGCATTCTTCTCCTCT 59.301 41.667 0.00 0.00 0.00 3.69
5963 7972 5.877012 GTCAAACATGCATTCTTCTCCTCTA 59.123 40.000 0.00 0.00 0.00 2.43
5964 7973 6.036953 GTCAAACATGCATTCTTCTCCTCTAG 59.963 42.308 0.00 0.00 0.00 2.43
5965 7974 4.686191 ACATGCATTCTTCTCCTCTAGG 57.314 45.455 0.00 0.00 0.00 3.02
5966 7975 3.181456 ACATGCATTCTTCTCCTCTAGGC 60.181 47.826 0.00 0.00 34.44 3.93
5967 7976 2.470990 TGCATTCTTCTCCTCTAGGCA 58.529 47.619 0.00 0.00 34.44 4.75
5968 7977 2.169352 TGCATTCTTCTCCTCTAGGCAC 59.831 50.000 0.00 0.00 34.44 5.01
5969 7978 2.484594 GCATTCTTCTCCTCTAGGCACC 60.485 54.545 0.00 0.00 34.44 5.01
5970 7979 2.930109 TTCTTCTCCTCTAGGCACCT 57.070 50.000 0.00 0.00 34.44 4.00
5971 7980 4.219115 CATTCTTCTCCTCTAGGCACCTA 58.781 47.826 0.00 0.00 34.44 3.08
5972 7981 4.332683 TTCTTCTCCTCTAGGCACCTAA 57.667 45.455 0.00 0.00 34.44 2.69
5973 7982 3.633418 TCTTCTCCTCTAGGCACCTAAC 58.367 50.000 0.00 0.00 34.44 2.34
5974 7983 3.011369 TCTTCTCCTCTAGGCACCTAACA 59.989 47.826 0.00 0.00 34.44 2.41
5975 7984 2.736347 TCTCCTCTAGGCACCTAACAC 58.264 52.381 0.00 0.00 34.44 3.32
5976 7985 2.312140 TCTCCTCTAGGCACCTAACACT 59.688 50.000 0.00 0.00 34.44 3.55
5977 7986 2.428890 CTCCTCTAGGCACCTAACACTG 59.571 54.545 0.00 0.00 34.44 3.66
5978 7987 2.042569 TCCTCTAGGCACCTAACACTGA 59.957 50.000 0.00 0.00 34.44 3.41
5979 7988 2.428890 CCTCTAGGCACCTAACACTGAG 59.571 54.545 0.00 1.09 0.00 3.35
5980 7989 1.825474 TCTAGGCACCTAACACTGAGC 59.175 52.381 0.00 0.00 0.00 4.26
5981 7990 1.550524 CTAGGCACCTAACACTGAGCA 59.449 52.381 0.00 0.00 0.00 4.26
5982 7991 0.764890 AGGCACCTAACACTGAGCAA 59.235 50.000 0.00 0.00 0.00 3.91
5983 7992 1.352352 AGGCACCTAACACTGAGCAAT 59.648 47.619 0.00 0.00 0.00 3.56
5984 7993 2.162681 GGCACCTAACACTGAGCAATT 58.837 47.619 0.00 0.00 0.00 2.32
5985 7994 2.162408 GGCACCTAACACTGAGCAATTC 59.838 50.000 0.00 0.00 0.00 2.17
5986 7995 3.077359 GCACCTAACACTGAGCAATTCT 58.923 45.455 0.00 0.00 0.00 2.40
5987 7996 4.253685 GCACCTAACACTGAGCAATTCTA 58.746 43.478 0.00 0.00 0.00 2.10
5988 7997 4.878397 GCACCTAACACTGAGCAATTCTAT 59.122 41.667 0.00 0.00 0.00 1.98
5989 7998 5.220739 GCACCTAACACTGAGCAATTCTATG 60.221 44.000 0.00 0.00 0.00 2.23
5990 7999 4.878397 ACCTAACACTGAGCAATTCTATGC 59.122 41.667 0.00 0.00 46.78 3.14
6001 8010 5.368256 GCAATTCTATGCAGTAGGAATGG 57.632 43.478 0.00 0.00 45.70 3.16
6002 8011 4.320788 GCAATTCTATGCAGTAGGAATGGC 60.321 45.833 13.43 13.43 45.70 4.40
6003 8012 4.989875 ATTCTATGCAGTAGGAATGGCT 57.010 40.909 0.00 0.00 0.00 4.75
6004 8013 6.233434 CAATTCTATGCAGTAGGAATGGCTA 58.767 40.000 0.00 0.00 0.00 3.93
6005 8014 4.873746 TCTATGCAGTAGGAATGGCTAC 57.126 45.455 0.00 0.00 0.00 3.58
6006 8015 4.223144 TCTATGCAGTAGGAATGGCTACA 58.777 43.478 0.00 0.00 0.00 2.74
6007 8016 4.840680 TCTATGCAGTAGGAATGGCTACAT 59.159 41.667 0.00 0.00 39.54 2.29
6008 8017 6.016555 TCTATGCAGTAGGAATGGCTACATA 58.983 40.000 0.00 0.00 35.94 2.29
6009 8018 4.336889 TGCAGTAGGAATGGCTACATAC 57.663 45.455 0.00 0.00 35.94 2.39
6010 8019 3.709141 TGCAGTAGGAATGGCTACATACA 59.291 43.478 0.00 0.00 35.94 2.29
6011 8020 4.202253 TGCAGTAGGAATGGCTACATACAG 60.202 45.833 0.00 0.00 35.94 2.74
6012 8021 4.039245 GCAGTAGGAATGGCTACATACAGA 59.961 45.833 0.00 0.00 35.94 3.41
6013 8022 5.777802 CAGTAGGAATGGCTACATACAGAG 58.222 45.833 0.00 0.00 35.94 3.35
6014 8023 5.303078 CAGTAGGAATGGCTACATACAGAGT 59.697 44.000 0.00 0.00 35.94 3.24
6015 8024 4.679373 AGGAATGGCTACATACAGAGTG 57.321 45.455 0.00 0.00 35.94 3.51
6016 8025 3.134458 GGAATGGCTACATACAGAGTGC 58.866 50.000 0.00 0.00 35.94 4.40
6017 8026 3.432186 GGAATGGCTACATACAGAGTGCA 60.432 47.826 0.00 0.00 35.94 4.57
6018 8027 2.967599 TGGCTACATACAGAGTGCAG 57.032 50.000 0.00 0.00 0.00 4.41
6019 8028 2.456577 TGGCTACATACAGAGTGCAGA 58.543 47.619 0.00 0.00 0.00 4.26
6020 8029 3.033909 TGGCTACATACAGAGTGCAGAT 58.966 45.455 0.00 0.00 0.00 2.90
6021 8030 3.452264 TGGCTACATACAGAGTGCAGATT 59.548 43.478 0.00 0.00 0.00 2.40
6022 8031 3.806521 GGCTACATACAGAGTGCAGATTG 59.193 47.826 0.00 0.00 0.00 2.67
6023 8032 3.247173 GCTACATACAGAGTGCAGATTGC 59.753 47.826 0.00 0.00 45.29 3.56
6041 8050 9.817365 GCAGATTGCAACTAGTGTAATATTATG 57.183 33.333 0.00 0.00 42.00 1.90
6045 8054 9.627123 ATTGCAACTAGTGTAATATTATGTGGT 57.373 29.630 0.00 0.00 40.37 4.16
6046 8055 8.657074 TGCAACTAGTGTAATATTATGTGGTC 57.343 34.615 0.00 0.00 0.00 4.02
6047 8056 7.713507 TGCAACTAGTGTAATATTATGTGGTCC 59.286 37.037 0.00 0.00 0.00 4.46
6048 8057 7.713507 GCAACTAGTGTAATATTATGTGGTCCA 59.286 37.037 0.00 0.00 0.00 4.02
6049 8058 9.607988 CAACTAGTGTAATATTATGTGGTCCAA 57.392 33.333 0.00 0.00 0.00 3.53
6054 8063 8.413229 AGTGTAATATTATGTGGTCCAAAATGC 58.587 33.333 0.00 0.00 0.00 3.56
6055 8064 8.194104 GTGTAATATTATGTGGTCCAAAATGCA 58.806 33.333 0.00 0.00 0.00 3.96
6056 8065 8.753133 TGTAATATTATGTGGTCCAAAATGCAA 58.247 29.630 0.00 0.00 0.00 4.08
6057 8066 9.762933 GTAATATTATGTGGTCCAAAATGCAAT 57.237 29.630 0.00 0.00 0.00 3.56
6061 8070 7.897575 TTATGTGGTCCAAAATGCAATTAAC 57.102 32.000 0.00 0.00 33.67 2.01
6062 8071 5.543507 TGTGGTCCAAAATGCAATTAACT 57.456 34.783 0.00 0.00 33.67 2.24
6063 8072 5.537188 TGTGGTCCAAAATGCAATTAACTC 58.463 37.500 0.00 0.00 33.67 3.01
6064 8073 5.304101 TGTGGTCCAAAATGCAATTAACTCT 59.696 36.000 0.00 0.00 33.67 3.24
6065 8074 6.491745 TGTGGTCCAAAATGCAATTAACTCTA 59.508 34.615 0.00 0.00 33.67 2.43
6066 8075 7.014711 TGTGGTCCAAAATGCAATTAACTCTAA 59.985 33.333 0.00 0.00 33.67 2.10
6067 8076 7.870445 GTGGTCCAAAATGCAATTAACTCTAAA 59.130 33.333 0.00 0.00 33.67 1.85
6068 8077 8.424918 TGGTCCAAAATGCAATTAACTCTAAAA 58.575 29.630 0.00 0.00 33.67 1.52
6069 8078 9.267084 GGTCCAAAATGCAATTAACTCTAAAAA 57.733 29.630 0.00 0.00 33.67 1.94
7673 9717 6.321945 TCGCCTATTGTGATAGTGGTACTTAA 59.678 38.462 0.00 0.00 34.62 1.85
7674 9718 7.014905 TCGCCTATTGTGATAGTGGTACTTAAT 59.985 37.037 0.00 0.00 34.62 1.40
7829 9873 2.095212 GGAAACCTTGAAGACCGCATTC 60.095 50.000 0.00 0.00 0.00 2.67
7883 9927 3.384668 CACATCCGTACACAGATCATCC 58.615 50.000 0.00 0.00 0.00 3.51
7945 9989 3.379865 TAATGCCTCGGTCCACGGC 62.380 63.158 10.76 10.76 44.45 5.68
8057 10101 2.108250 AGCTGTCCACCAAACCTAACAT 59.892 45.455 0.00 0.00 0.00 2.71
8138 10182 4.412843 TGATGTCTACTCACTGGGTGTTA 58.587 43.478 0.00 0.00 34.79 2.41
8205 10249 7.322222 CACAAAGAAAGTTAGAGAAGCATTTCG 59.678 37.037 0.00 0.00 38.38 3.46
8221 10265 4.201950 GCATTTCGAAGTGATAACCTGCAT 60.202 41.667 23.17 0.00 0.00 3.96
8484 10528 9.167311 GGACACATGTTTCTGAAACTTCTATAT 57.833 33.333 27.75 13.30 41.90 0.86
8593 10638 1.961394 CCTCAAATGGCATCTGATGGG 59.039 52.381 18.60 0.00 0.00 4.00
8662 10707 4.130118 GCAATAGGTCTCCAATGACGAAT 58.870 43.478 0.00 0.00 37.81 3.34
8755 10800 1.080995 CAGTAGCGAAGGCAGTCAGC 61.081 60.000 0.00 0.00 43.41 4.26
9162 11638 1.384191 GGGATTTGGCTGACCTGGT 59.616 57.895 0.00 0.00 36.63 4.00
9200 11676 2.046938 CCTCGGCTCCGGCTATTAA 58.953 57.895 8.59 0.00 40.25 1.40
9207 11683 3.194116 CGGCTCCGGCTATTAAATAGGTA 59.806 47.826 0.00 0.00 38.73 3.08
9217 11693 8.771766 CGGCTATTAAATAGGTAGGAGTTTTTC 58.228 37.037 0.00 0.00 33.43 2.29
9285 11762 1.186200 CCTCCTCAGGTTCATCGTCA 58.814 55.000 0.00 0.00 34.60 4.35
9309 11786 1.961394 CGGATTAGATGGAGTTCCGGA 59.039 52.381 0.00 0.00 44.24 5.14
9312 11789 3.243907 GGATTAGATGGAGTTCCGGACTG 60.244 52.174 1.83 0.00 39.19 3.51
9313 11790 1.112113 TAGATGGAGTTCCGGACTGC 58.888 55.000 1.83 11.14 46.03 4.40
9326 11998 3.391665 GACTGCGGCTACAGGGCAT 62.392 63.158 0.00 0.00 42.21 4.40
9359 12031 1.259507 GCACGTGCACGAAGACTTTTA 59.740 47.619 42.94 0.00 43.02 1.52
9369 12042 6.261381 TGCACGAAGACTTTTAGGTTGTTATT 59.739 34.615 0.00 0.00 0.00 1.40
9464 12138 0.106519 AAATGGGGGAAGGCTCGATG 60.107 55.000 0.00 0.00 0.00 3.84
9470 12144 0.727398 GGGAAGGCTCGATGAAAACG 59.273 55.000 0.00 0.00 0.00 3.60
9483 12157 4.623167 CGATGAAAACGAGCTGGGATATAG 59.377 45.833 0.00 0.00 31.90 1.31
9484 12158 5.564848 CGATGAAAACGAGCTGGGATATAGA 60.565 44.000 0.00 0.00 31.90 1.98
9490 12164 7.497925 AAACGAGCTGGGATATAGATTTTTC 57.502 36.000 0.00 0.00 0.00 2.29
9496 12170 6.774656 AGCTGGGATATAGATTTTTCACAAGG 59.225 38.462 0.00 0.00 0.00 3.61
9502 12176 9.620259 GGATATAGATTTTTCACAAGGAAGAGT 57.380 33.333 0.00 0.00 36.72 3.24
9522 12196 3.095332 GTTAGTTACCCTCGGTCTTCCT 58.905 50.000 0.00 0.00 37.09 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.865090 ACTCCCTCTGTTCACTAATATAAGATG 58.135 37.037 0.00 0.00 0.00 2.90
4 5 9.877222 TGATACTCCCTCTGTTCACTAATATAA 57.123 33.333 0.00 0.00 0.00 0.98
5 6 9.877222 TTGATACTCCCTCTGTTCACTAATATA 57.123 33.333 0.00 0.00 0.00 0.86
145 246 3.243068 GGTGTTGTTGTACAAGCCTGAAG 60.243 47.826 8.98 0.00 39.00 3.02
146 247 2.685897 GGTGTTGTTGTACAAGCCTGAA 59.314 45.455 8.98 0.00 39.00 3.02
147 248 2.294074 GGTGTTGTTGTACAAGCCTGA 58.706 47.619 8.98 0.00 39.00 3.86
148 249 2.020720 TGGTGTTGTTGTACAAGCCTG 58.979 47.619 8.98 0.00 39.00 4.85
149 250 2.428544 TGGTGTTGTTGTACAAGCCT 57.571 45.000 8.98 0.00 39.00 4.58
150 251 2.685897 TCTTGGTGTTGTTGTACAAGCC 59.314 45.455 8.98 7.25 39.00 4.35
151 252 4.364415 TTCTTGGTGTTGTTGTACAAGC 57.636 40.909 8.98 4.97 39.00 4.01
152 253 7.032580 TGAATTTCTTGGTGTTGTTGTACAAG 58.967 34.615 8.98 0.00 39.00 3.16
153 254 6.925211 TGAATTTCTTGGTGTTGTTGTACAA 58.075 32.000 3.59 3.59 35.42 2.41
154 255 6.516739 TGAATTTCTTGGTGTTGTTGTACA 57.483 33.333 0.00 0.00 0.00 2.90
155 256 6.640907 GGATGAATTTCTTGGTGTTGTTGTAC 59.359 38.462 0.00 0.00 0.00 2.90
156 257 6.322456 TGGATGAATTTCTTGGTGTTGTTGTA 59.678 34.615 0.00 0.00 0.00 2.41
157 258 5.128499 TGGATGAATTTCTTGGTGTTGTTGT 59.872 36.000 0.00 0.00 0.00 3.32
158 259 5.599732 TGGATGAATTTCTTGGTGTTGTTG 58.400 37.500 0.00 0.00 0.00 3.33
159 260 5.867903 TGGATGAATTTCTTGGTGTTGTT 57.132 34.783 0.00 0.00 0.00 2.83
160 261 6.721208 AGTATGGATGAATTTCTTGGTGTTGT 59.279 34.615 0.00 0.00 0.00 3.32
161 262 7.031372 CAGTATGGATGAATTTCTTGGTGTTG 58.969 38.462 0.00 0.00 0.00 3.33
162 263 6.721208 ACAGTATGGATGAATTTCTTGGTGTT 59.279 34.615 0.00 0.00 43.62 3.32
163 264 6.248433 ACAGTATGGATGAATTTCTTGGTGT 58.752 36.000 0.00 0.00 43.62 4.16
167 268 7.434307 GCATTGACAGTATGGATGAATTTCTTG 59.566 37.037 0.00 0.00 43.62 3.02
228 329 4.051922 GACGATGCGTTATCCTTGAGAAT 58.948 43.478 0.00 0.00 41.37 2.40
235 336 0.104304 GTGGGACGATGCGTTATCCT 59.896 55.000 8.78 0.00 41.37 3.24
303 404 0.845102 CTAGGGGGTGGAACAAGGGT 60.845 60.000 0.00 0.00 44.16 4.34
315 416 3.072476 CATGGCGGATCTAGGGGG 58.928 66.667 0.00 0.00 0.00 5.40
413 514 1.069204 GTCTGTCTGTTCCTGTGCTCA 59.931 52.381 0.00 0.00 0.00 4.26
420 521 2.486191 CCTTGCTTGTCTGTCTGTTCCT 60.486 50.000 0.00 0.00 0.00 3.36
445 546 2.474816 CGATTCCTCCGATCTGGTTTC 58.525 52.381 3.97 0.00 39.52 2.78
521 622 2.639926 GCGAATCGATGGACGCGAG 61.640 63.158 15.93 0.00 41.49 5.03
534 635 0.179073 CATCAACCCCTCTCGCGAAT 60.179 55.000 11.33 0.00 0.00 3.34
536 637 2.892640 CATCAACCCCTCTCGCGA 59.107 61.111 9.26 9.26 0.00 5.87
541 642 2.142292 AAAGCCGCATCAACCCCTCT 62.142 55.000 0.00 0.00 0.00 3.69
543 644 1.978617 CAAAGCCGCATCAACCCCT 60.979 57.895 0.00 0.00 0.00 4.79
558 659 0.942410 CTCCGACGAGCGAAACCAAA 60.942 55.000 0.00 0.00 44.57 3.28
620 721 4.614475 AGACAGAGAGAGAGAGAGAGAGA 58.386 47.826 0.00 0.00 0.00 3.10
621 722 4.648762 AGAGACAGAGAGAGAGAGAGAGAG 59.351 50.000 0.00 0.00 0.00 3.20
622 723 4.614475 AGAGACAGAGAGAGAGAGAGAGA 58.386 47.826 0.00 0.00 0.00 3.10
624 725 4.403752 CAGAGAGACAGAGAGAGAGAGAGA 59.596 50.000 0.00 0.00 0.00 3.10
625 726 4.161189 ACAGAGAGACAGAGAGAGAGAGAG 59.839 50.000 0.00 0.00 0.00 3.20
626 727 4.096681 ACAGAGAGACAGAGAGAGAGAGA 58.903 47.826 0.00 0.00 0.00 3.10
627 728 4.161189 AGACAGAGAGACAGAGAGAGAGAG 59.839 50.000 0.00 0.00 0.00 3.20
628 729 4.096681 AGACAGAGAGACAGAGAGAGAGA 58.903 47.826 0.00 0.00 0.00 3.10
629 730 4.478206 AGACAGAGAGACAGAGAGAGAG 57.522 50.000 0.00 0.00 0.00 3.20
630 731 4.532126 AGAAGACAGAGAGACAGAGAGAGA 59.468 45.833 0.00 0.00 0.00 3.10
631 732 4.836825 AGAAGACAGAGAGACAGAGAGAG 58.163 47.826 0.00 0.00 0.00 3.20
632 733 4.908601 AGAAGACAGAGAGACAGAGAGA 57.091 45.455 0.00 0.00 0.00 3.10
633 734 5.707298 AGAAAGAAGACAGAGAGACAGAGAG 59.293 44.000 0.00 0.00 0.00 3.20
634 735 5.630121 AGAAAGAAGACAGAGAGACAGAGA 58.370 41.667 0.00 0.00 0.00 3.10
635 736 5.964958 AGAAAGAAGACAGAGAGACAGAG 57.035 43.478 0.00 0.00 0.00 3.35
636 737 5.242838 GGAAGAAAGAAGACAGAGAGACAGA 59.757 44.000 0.00 0.00 0.00 3.41
639 740 5.722021 AGGAAGAAAGAAGACAGAGAGAC 57.278 43.478 0.00 0.00 0.00 3.36
717 827 3.313791 AGCCGGGCCCATTTAATATTTT 58.686 40.909 24.92 0.00 0.00 1.82
728 838 1.983119 CTAAATGAGAGCCGGGCCCA 61.983 60.000 24.92 12.02 0.00 5.36
734 844 0.109342 ATGGGCCTAAATGAGAGCCG 59.891 55.000 4.53 0.00 40.56 5.52
739 849 2.695147 GGTTCCAATGGGCCTAAATGAG 59.305 50.000 4.53 0.00 0.00 2.90
805 916 2.437895 GAGTAAACGGGGCTGGGC 60.438 66.667 0.00 0.00 0.00 5.36
806 917 1.221021 GAGAGTAAACGGGGCTGGG 59.779 63.158 0.00 0.00 0.00 4.45
807 918 0.175989 GAGAGAGTAAACGGGGCTGG 59.824 60.000 0.00 0.00 0.00 4.85
808 919 1.135333 GAGAGAGAGTAAACGGGGCTG 59.865 57.143 0.00 0.00 0.00 4.85
809 920 1.006162 AGAGAGAGAGTAAACGGGGCT 59.994 52.381 0.00 0.00 0.00 5.19
810 921 1.135333 CAGAGAGAGAGTAAACGGGGC 59.865 57.143 0.00 0.00 0.00 5.80
812 923 4.522722 AAACAGAGAGAGAGTAAACGGG 57.477 45.455 0.00 0.00 0.00 5.28
813 924 5.405873 GGAAAAACAGAGAGAGAGTAAACGG 59.594 44.000 0.00 0.00 0.00 4.44
814 925 5.405873 GGGAAAAACAGAGAGAGAGTAAACG 59.594 44.000 0.00 0.00 0.00 3.60
816 927 5.607171 AGGGGAAAAACAGAGAGAGAGTAAA 59.393 40.000 0.00 0.00 0.00 2.01
818 929 4.528596 CAGGGGAAAAACAGAGAGAGAGTA 59.471 45.833 0.00 0.00 0.00 2.59
819 930 3.326297 CAGGGGAAAAACAGAGAGAGAGT 59.674 47.826 0.00 0.00 0.00 3.24
830 941 3.520691 AGTACCTTCCAGGGGAAAAAC 57.479 47.619 0.00 0.00 41.54 2.43
842 953 2.417515 CGGGAGAAGCAGAAGTACCTTC 60.418 54.545 1.76 1.76 40.45 3.46
843 954 1.550976 CGGGAGAAGCAGAAGTACCTT 59.449 52.381 0.00 0.00 0.00 3.50
844 955 1.187087 CGGGAGAAGCAGAAGTACCT 58.813 55.000 0.00 0.00 0.00 3.08
845 956 0.896226 ACGGGAGAAGCAGAAGTACC 59.104 55.000 0.00 0.00 0.00 3.34
847 958 2.490903 GTGTACGGGAGAAGCAGAAGTA 59.509 50.000 0.00 0.00 0.00 2.24
849 960 1.732732 CGTGTACGGGAGAAGCAGAAG 60.733 57.143 0.00 0.00 35.37 2.85
850 961 0.242825 CGTGTACGGGAGAAGCAGAA 59.757 55.000 0.00 0.00 35.37 3.02
851 962 0.607217 TCGTGTACGGGAGAAGCAGA 60.607 55.000 4.44 0.00 40.29 4.26
869 982 3.747529 TGAAAAGGGAAACGTACCGAATC 59.252 43.478 0.00 0.00 0.00 2.52
1051 1164 1.520600 CCATGCTCTTGCTGTGCACA 61.521 55.000 20.37 20.37 46.07 4.57
1054 1167 1.975407 ACCCATGCTCTTGCTGTGC 60.975 57.895 0.00 0.00 40.48 4.57
1055 1168 0.892358 ACACCCATGCTCTTGCTGTG 60.892 55.000 0.00 0.00 40.48 3.66
1056 1169 0.178981 AACACCCATGCTCTTGCTGT 60.179 50.000 0.00 0.00 40.48 4.40
1057 1170 0.242825 CAACACCCATGCTCTTGCTG 59.757 55.000 0.00 0.00 40.48 4.41
1058 1171 0.896940 CCAACACCCATGCTCTTGCT 60.897 55.000 0.00 0.00 40.48 3.91
1059 1172 1.588082 CCAACACCCATGCTCTTGC 59.412 57.895 0.00 0.00 40.20 4.01
1060 1173 1.588082 GCCAACACCCATGCTCTTG 59.412 57.895 0.00 0.00 0.00 3.02
1061 1174 1.607467 GGCCAACACCCATGCTCTT 60.607 57.895 0.00 0.00 0.00 2.85
1062 1175 2.036256 GGCCAACACCCATGCTCT 59.964 61.111 0.00 0.00 0.00 4.09
1063 1176 1.669999 GATGGCCAACACCCATGCTC 61.670 60.000 10.96 0.00 42.94 4.26
1064 1177 1.683365 GATGGCCAACACCCATGCT 60.683 57.895 10.96 0.00 42.94 3.79
1067 1180 0.612732 CACAGATGGCCAACACCCAT 60.613 55.000 10.96 0.00 45.47 4.00
1068 1181 1.228521 CACAGATGGCCAACACCCA 60.229 57.895 10.96 0.00 36.66 4.51
1070 1183 1.870055 CTGCACAGATGGCCAACACC 61.870 60.000 10.96 0.00 0.00 4.16
1071 1184 0.890542 TCTGCACAGATGGCCAACAC 60.891 55.000 10.96 4.46 31.41 3.32
1072 1185 0.607217 CTCTGCACAGATGGCCAACA 60.607 55.000 10.96 0.25 36.76 3.33
1073 1186 1.930908 GCTCTGCACAGATGGCCAAC 61.931 60.000 10.96 7.42 36.76 3.77
1074 1187 1.676635 GCTCTGCACAGATGGCCAA 60.677 57.895 10.96 0.00 36.76 4.52
1113 1235 3.650942 ACGAGGCCCAATTATTAGGATCA 59.349 43.478 0.00 0.00 0.00 2.92
1120 1242 3.433740 GGAAGAGACGAGGCCCAATTATT 60.434 47.826 0.00 0.00 0.00 1.40
1131 1253 0.814457 CACCTGGAGGAAGAGACGAG 59.186 60.000 0.00 0.00 38.94 4.18
1258 1380 9.911788 ATGTGGATATATACCATGAAAAGGATC 57.088 33.333 0.00 0.00 39.69 3.36
1293 1419 2.649531 ATGTCGGGAGTTGGTTGAAA 57.350 45.000 0.00 0.00 0.00 2.69
1391 1519 4.065789 GTCTCCAAACACTAGAAACCAGG 58.934 47.826 0.00 0.00 0.00 4.45
1417 1546 3.071167 ACCTGTTACAGTTTGGAGGACTC 59.929 47.826 11.68 0.00 0.00 3.36
1473 1602 9.264719 CTCGATGCCATATAATTGCTTATATCA 57.735 33.333 0.00 0.00 38.09 2.15
1490 1625 1.144716 GTCATCTGCCTCGATGCCA 59.855 57.895 10.31 0.00 40.41 4.92
1513 1648 6.646267 AGGGACGTCAATTGCTACTTAATTA 58.354 36.000 18.91 0.00 0.00 1.40
1577 1726 8.458573 AACACCAACACAAAAATACTATCTCA 57.541 30.769 0.00 0.00 0.00 3.27
1779 1928 3.477530 ACTGAACTAAAGCAAGGTGGAC 58.522 45.455 0.00 0.00 0.00 4.02
1820 1969 0.941542 GCACGGTACAAGTCTGCAAA 59.058 50.000 0.00 0.00 0.00 3.68
1878 2029 7.929941 TGCATAATGAGTACCACAATAAACA 57.070 32.000 0.00 0.00 0.00 2.83
1911 2062 3.992427 CCTTTACTACTTTCGGTGGTCAC 59.008 47.826 0.00 0.00 40.18 3.67
1934 2085 2.427095 AGGAACAGAAACAACAGGTTGC 59.573 45.455 11.84 0.00 44.03 4.17
2163 2315 1.996798 AGGTCCGTCTGAACTCTGAA 58.003 50.000 0.00 0.00 35.57 3.02
2164 2316 2.040012 AGTAGGTCCGTCTGAACTCTGA 59.960 50.000 0.00 0.00 41.27 3.27
2165 2317 2.438411 AGTAGGTCCGTCTGAACTCTG 58.562 52.381 0.00 0.00 41.27 3.35
2166 2318 2.883122 AGTAGGTCCGTCTGAACTCT 57.117 50.000 0.00 0.00 41.27 3.24
2167 2319 3.938289 AAAGTAGGTCCGTCTGAACTC 57.062 47.619 0.00 0.00 41.27 3.01
2168 2320 5.715753 AGATAAAAGTAGGTCCGTCTGAACT 59.284 40.000 0.00 0.00 45.27 3.01
2169 2321 5.963594 AGATAAAAGTAGGTCCGTCTGAAC 58.036 41.667 0.00 0.00 0.00 3.18
2254 2411 9.339850 GGAATAAGAGGACTAGAAATTTAACCC 57.660 37.037 0.00 0.00 0.00 4.11
2281 2438 3.706594 TGGAGATGAACAGACCTCATACC 59.293 47.826 0.00 0.00 33.63 2.73
2326 2483 1.822990 ACATGCTTTCAAGGGCTCATG 59.177 47.619 0.00 0.00 37.78 3.07
2442 2599 5.488341 AGACCTACATTAAGTTCGCACATT 58.512 37.500 0.00 0.00 0.00 2.71
2576 2739 3.365364 GCAGTGTTAAGCTTGCCAAGTAG 60.365 47.826 9.86 0.00 0.00 2.57
2660 2838 4.385358 TGTAGCAAGCTCGTGATCATTA 57.615 40.909 0.00 0.00 0.00 1.90
2669 2847 2.886081 AGAGTCAATGTAGCAAGCTCG 58.114 47.619 0.00 0.00 0.00 5.03
2680 2858 6.521151 AAAAAGGCCTGATTAGAGTCAATG 57.479 37.500 5.69 0.00 0.00 2.82
2726 2904 4.685924 CAGGTGCAACATTTCTCAAACTT 58.314 39.130 3.64 0.00 39.98 2.66
2731 2909 0.961019 GGCAGGTGCAACATTTCTCA 59.039 50.000 3.64 0.00 44.36 3.27
2765 2943 8.341892 TGACATGTATTTATTAGTGGCAAACA 57.658 30.769 0.00 0.00 0.00 2.83
2766 2944 7.432252 GCTGACATGTATTTATTAGTGGCAAAC 59.568 37.037 0.00 0.00 0.00 2.93
2767 2945 7.121907 TGCTGACATGTATTTATTAGTGGCAAA 59.878 33.333 0.00 0.00 0.00 3.68
2768 2946 6.601217 TGCTGACATGTATTTATTAGTGGCAA 59.399 34.615 0.00 0.00 0.00 4.52
2769 2947 6.118852 TGCTGACATGTATTTATTAGTGGCA 58.881 36.000 0.00 0.00 0.00 4.92
2770 2948 6.618287 TGCTGACATGTATTTATTAGTGGC 57.382 37.500 0.00 0.00 0.00 5.01
2771 2949 7.592533 GCATTGCTGACATGTATTTATTAGTGG 59.407 37.037 0.00 0.00 0.00 4.00
2772 2950 8.347771 AGCATTGCTGACATGTATTTATTAGTG 58.652 33.333 11.09 0.00 37.57 2.74
2773 2951 8.455903 AGCATTGCTGACATGTATTTATTAGT 57.544 30.769 11.09 0.00 37.57 2.24
2774 2952 8.781196 AGAGCATTGCTGACATGTATTTATTAG 58.219 33.333 17.51 0.00 39.88 1.73
2775 2953 8.681486 AGAGCATTGCTGACATGTATTTATTA 57.319 30.769 17.51 0.00 39.88 0.98
2776 2954 7.578310 AGAGCATTGCTGACATGTATTTATT 57.422 32.000 17.51 0.00 39.88 1.40
2777 2955 7.578310 AAGAGCATTGCTGACATGTATTTAT 57.422 32.000 17.51 0.00 39.88 1.40
2778 2956 7.395190 AAAGAGCATTGCTGACATGTATTTA 57.605 32.000 17.51 0.00 39.88 1.40
2779 2957 5.909621 AAGAGCATTGCTGACATGTATTT 57.090 34.783 17.51 0.00 39.88 1.40
2780 2958 5.909621 AAAGAGCATTGCTGACATGTATT 57.090 34.783 17.51 0.00 39.88 1.89
2781 2959 6.769341 TGATAAAGAGCATTGCTGACATGTAT 59.231 34.615 17.51 4.27 39.88 2.29
2782 2960 6.037500 GTGATAAAGAGCATTGCTGACATGTA 59.962 38.462 17.51 0.00 39.88 2.29
2783 2961 4.945543 TGATAAAGAGCATTGCTGACATGT 59.054 37.500 17.51 0.00 39.88 3.21
2784 2962 5.066117 AGTGATAAAGAGCATTGCTGACATG 59.934 40.000 17.51 0.00 39.88 3.21
2785 2963 5.191426 AGTGATAAAGAGCATTGCTGACAT 58.809 37.500 17.51 3.70 39.88 3.06
2786 2964 4.582869 AGTGATAAAGAGCATTGCTGACA 58.417 39.130 17.51 4.19 39.88 3.58
2787 2965 5.448360 GGAAGTGATAAAGAGCATTGCTGAC 60.448 44.000 17.51 2.18 39.88 3.51
2788 2966 4.637534 GGAAGTGATAAAGAGCATTGCTGA 59.362 41.667 17.51 0.00 39.88 4.26
2789 2967 4.397103 TGGAAGTGATAAAGAGCATTGCTG 59.603 41.667 17.51 0.00 39.88 4.41
2790 2968 4.592942 TGGAAGTGATAAAGAGCATTGCT 58.407 39.130 11.79 11.79 43.88 3.91
2791 2969 4.970662 TGGAAGTGATAAAGAGCATTGC 57.029 40.909 0.00 0.00 0.00 3.56
2792 2970 6.127535 ACCATTGGAAGTGATAAAGAGCATTG 60.128 38.462 10.37 0.00 0.00 2.82
2793 2971 5.954150 ACCATTGGAAGTGATAAAGAGCATT 59.046 36.000 10.37 0.00 0.00 3.56
2794 2972 5.513233 ACCATTGGAAGTGATAAAGAGCAT 58.487 37.500 10.37 0.00 0.00 3.79
2795 2973 4.922206 ACCATTGGAAGTGATAAAGAGCA 58.078 39.130 10.37 0.00 0.00 4.26
2796 2974 4.943705 TGACCATTGGAAGTGATAAAGAGC 59.056 41.667 10.37 0.00 0.00 4.09
2797 2975 6.430925 TGTTGACCATTGGAAGTGATAAAGAG 59.569 38.462 10.37 0.00 0.00 2.85
2798 2976 6.303054 TGTTGACCATTGGAAGTGATAAAGA 58.697 36.000 10.37 0.00 0.00 2.52
2799 2977 6.207417 ACTGTTGACCATTGGAAGTGATAAAG 59.793 38.462 10.37 0.00 0.00 1.85
2800 2978 6.016360 CACTGTTGACCATTGGAAGTGATAAA 60.016 38.462 10.37 0.00 36.51 1.40
2801 2979 5.473162 CACTGTTGACCATTGGAAGTGATAA 59.527 40.000 10.37 0.00 36.51 1.75
2802 2980 5.003160 CACTGTTGACCATTGGAAGTGATA 58.997 41.667 10.37 0.00 36.51 2.15
2836 3014 8.257306 TCTAGTTTGTTACATAGCATCATCACA 58.743 33.333 0.00 0.00 0.00 3.58
2838 3016 7.435192 CGTCTAGTTTGTTACATAGCATCATCA 59.565 37.037 0.00 0.00 0.00 3.07
2839 3017 7.567771 GCGTCTAGTTTGTTACATAGCATCATC 60.568 40.741 0.00 0.00 0.00 2.92
2840 3018 6.201044 GCGTCTAGTTTGTTACATAGCATCAT 59.799 38.462 0.00 0.00 0.00 2.45
2863 3041 1.269517 GCTCTCATGACCTAGGAAGCG 60.270 57.143 17.98 0.96 0.00 4.68
2938 3119 5.183969 GGAATAGGGTGTCTTGGTAGTTTC 58.816 45.833 0.00 0.00 0.00 2.78
3044 3225 2.293170 TGCATGGTTCTCGAACAAACA 58.707 42.857 11.47 0.00 42.85 2.83
3092 3273 6.810182 CAGTAAGAAGCATTTGAAAGAATGGG 59.190 38.462 0.00 0.00 37.47 4.00
3102 3283 5.886960 AGGCTAACAGTAAGAAGCATTTG 57.113 39.130 0.00 0.00 36.68 2.32
3321 3502 6.586344 TGAGAAACAATAGGCTAGAGGAATG 58.414 40.000 0.00 0.00 0.00 2.67
3606 3790 3.952323 AGCATGTCATGGAGAAAATGGAG 59.048 43.478 14.64 0.00 0.00 3.86
3720 3904 7.121168 CCACAAAGGAAATGATAGAACTAGCAA 59.879 37.037 3.98 0.00 41.22 3.91
3775 3959 7.636150 AAATACAAAGATCACTGGATGGAAG 57.364 36.000 0.00 0.00 32.67 3.46
4021 4205 5.163622 CCTTGATGAACAACTCACAAACAGT 60.164 40.000 0.00 0.00 36.69 3.55
4156 4340 3.427503 GGTGCAAAACCGTATCCATCTTG 60.428 47.826 0.00 0.00 39.81 3.02
4157 4341 2.752903 GGTGCAAAACCGTATCCATCTT 59.247 45.455 0.00 0.00 39.81 2.40
4204 4388 7.695480 TGGTTCGAATTTGATTTCCTGAATA 57.305 32.000 0.00 0.00 0.00 1.75
4317 4502 5.092259 AGTAAGTACTTGGGCTTAGGAGTT 58.908 41.667 18.56 0.00 31.13 3.01
4771 4958 8.569641 CAGTAGATACCCTTACTAACTAAGCAG 58.430 40.741 0.00 0.00 31.71 4.24
4830 6562 5.300792 ACATTCCTAACAAACCATGTCGTTT 59.699 36.000 0.00 0.00 42.99 3.60
4833 6565 5.049060 TCAACATTCCTAACAAACCATGTCG 60.049 40.000 0.00 0.00 42.99 4.35
4860 6592 2.764010 TGCAGACGCCCTAAGAATAGAA 59.236 45.455 0.00 0.00 37.32 2.10
5062 6795 7.657761 GTGTGGTAGAATATGACCTTAAGATGG 59.342 40.741 3.36 0.00 36.62 3.51
5068 6801 7.914427 ATCTGTGTGGTAGAATATGACCTTA 57.086 36.000 3.98 0.00 36.62 2.69
5069 6802 6.814954 ATCTGTGTGGTAGAATATGACCTT 57.185 37.500 3.98 0.00 36.62 3.50
5070 6803 6.156949 ACAATCTGTGTGGTAGAATATGACCT 59.843 38.462 3.98 0.00 39.72 3.85
5071 6804 6.349300 ACAATCTGTGTGGTAGAATATGACC 58.651 40.000 0.00 0.00 39.72 4.02
5138 6885 6.183360 ACCCACACATAAACAAGTAAAAGGTG 60.183 38.462 0.00 0.00 0.00 4.00
5140 6887 6.399639 ACCCACACATAAACAAGTAAAAGG 57.600 37.500 0.00 0.00 0.00 3.11
5142 6889 8.196103 GGTTAACCCACACATAAACAAGTAAAA 58.804 33.333 14.16 0.00 0.00 1.52
5158 6905 4.396790 TCATTGCTTAATCGGTTAACCCAC 59.603 41.667 19.09 1.70 0.00 4.61
5161 6908 9.233232 CTAAATTCATTGCTTAATCGGTTAACC 57.767 33.333 15.13 15.13 0.00 2.85
5162 6909 9.783256 ACTAAATTCATTGCTTAATCGGTTAAC 57.217 29.630 0.00 0.00 0.00 2.01
5163 6910 9.997482 GACTAAATTCATTGCTTAATCGGTTAA 57.003 29.630 0.10 0.10 0.00 2.01
5164 6911 9.168451 TGACTAAATTCATTGCTTAATCGGTTA 57.832 29.630 0.00 0.00 0.00 2.85
5165 6912 8.050778 TGACTAAATTCATTGCTTAATCGGTT 57.949 30.769 0.00 0.00 0.00 4.44
5166 6913 7.624360 TGACTAAATTCATTGCTTAATCGGT 57.376 32.000 0.00 0.00 0.00 4.69
5167 6914 8.909708 TTTGACTAAATTCATTGCTTAATCGG 57.090 30.769 0.00 0.00 0.00 4.18
5233 6980 1.825622 GCCACAGCAGGGCCTAATC 60.826 63.158 5.28 0.00 45.87 1.75
5250 6997 1.221414 AAAGTTCTCAGCACTCACGC 58.779 50.000 0.00 0.00 0.00 5.34
5252 6999 3.935828 GGGATAAAGTTCTCAGCACTCAC 59.064 47.826 0.00 0.00 0.00 3.51
5253 7000 3.840666 AGGGATAAAGTTCTCAGCACTCA 59.159 43.478 0.00 0.00 0.00 3.41
5364 7111 6.934645 TCGTCTGAGGTCAAACAAGAAATTAT 59.065 34.615 0.00 0.00 0.00 1.28
5366 7113 5.123227 TCGTCTGAGGTCAAACAAGAAATT 58.877 37.500 0.00 0.00 0.00 1.82
5380 7127 3.837213 AAACAATGCAATCGTCTGAGG 57.163 42.857 0.00 0.00 0.00 3.86
5481 7229 0.555769 GGCCAGGTGGGATTGGATAA 59.444 55.000 0.00 0.00 40.01 1.75
5488 7236 3.341629 CTGTGGGCCAGGTGGGAT 61.342 66.667 6.40 0.00 40.01 3.85
5504 7252 0.178958 CTAGGTCCGCCATACTCCCT 60.179 60.000 0.00 0.00 37.19 4.20
5514 7262 1.523938 GCCCATGTTCTAGGTCCGC 60.524 63.158 0.00 0.00 0.00 5.54
5517 7265 0.181350 CCAGGCCCATGTTCTAGGTC 59.819 60.000 0.00 0.00 0.00 3.85
5530 7278 1.750778 CATAACATGTCCAACCAGGCC 59.249 52.381 0.00 0.00 37.29 5.19
5557 7305 4.100963 CCTATGGGCCGCATATCAATACTA 59.899 45.833 12.60 0.00 0.00 1.82
5741 7694 5.526846 CCTAGAGGAGAAGAATGCATGTTTC 59.473 44.000 0.00 7.64 37.39 2.78
5880 7889 2.359967 GGCAGTTCTAGCCGTCCCT 61.360 63.158 0.00 0.00 43.15 4.20
5881 7890 2.187163 GGCAGTTCTAGCCGTCCC 59.813 66.667 0.00 0.00 43.15 4.46
5887 7896 4.773323 AAGATGTTTTGGCAGTTCTAGC 57.227 40.909 0.00 0.00 0.00 3.42
5891 7900 9.736023 CCTAAATATAAGATGTTTTGGCAGTTC 57.264 33.333 0.00 0.00 32.04 3.01
5892 7901 9.474313 TCCTAAATATAAGATGTTTTGGCAGTT 57.526 29.630 4.92 0.00 36.65 3.16
5893 7902 9.474313 TTCCTAAATATAAGATGTTTTGGCAGT 57.526 29.630 4.92 0.00 36.65 4.40
5894 7903 9.736023 GTTCCTAAATATAAGATGTTTTGGCAG 57.264 33.333 4.92 0.00 36.65 4.85
5895 7904 9.249053 TGTTCCTAAATATAAGATGTTTTGGCA 57.751 29.630 4.92 0.00 36.65 4.92
5896 7905 9.736023 CTGTTCCTAAATATAAGATGTTTTGGC 57.264 33.333 4.92 0.00 36.65 4.52
5909 7918 9.890915 AGATCTACTTCCTCTGTTCCTAAATAT 57.109 33.333 0.00 0.00 0.00 1.28
5910 7919 9.716556 AAGATCTACTTCCTCTGTTCCTAAATA 57.283 33.333 0.00 0.00 32.91 1.40
5911 7920 8.616799 AAGATCTACTTCCTCTGTTCCTAAAT 57.383 34.615 0.00 0.00 32.91 1.40
5912 7921 8.437274 AAAGATCTACTTCCTCTGTTCCTAAA 57.563 34.615 0.00 0.00 37.93 1.85
5913 7922 9.191479 CTAAAGATCTACTTCCTCTGTTCCTAA 57.809 37.037 0.00 0.00 37.93 2.69
5914 7923 8.337739 ACTAAAGATCTACTTCCTCTGTTCCTA 58.662 37.037 0.00 0.00 37.93 2.94
5915 7924 7.186268 ACTAAAGATCTACTTCCTCTGTTCCT 58.814 38.462 0.00 0.00 37.93 3.36
5916 7925 7.122948 TGACTAAAGATCTACTTCCTCTGTTCC 59.877 40.741 0.00 0.00 37.93 3.62
5917 7926 8.057536 TGACTAAAGATCTACTTCCTCTGTTC 57.942 38.462 0.00 0.00 37.93 3.18
5918 7927 8.423906 TTGACTAAAGATCTACTTCCTCTGTT 57.576 34.615 0.00 0.00 37.93 3.16
5919 7928 8.308207 GTTTGACTAAAGATCTACTTCCTCTGT 58.692 37.037 0.00 0.00 37.93 3.41
5920 7929 8.307483 TGTTTGACTAAAGATCTACTTCCTCTG 58.693 37.037 0.00 0.00 37.93 3.35
5921 7930 8.423906 TGTTTGACTAAAGATCTACTTCCTCT 57.576 34.615 0.00 0.00 37.93 3.69
5922 7931 9.092876 CATGTTTGACTAAAGATCTACTTCCTC 57.907 37.037 0.00 0.00 37.93 3.71
5923 7932 7.550906 GCATGTTTGACTAAAGATCTACTTCCT 59.449 37.037 0.00 0.00 37.93 3.36
5924 7933 7.334421 TGCATGTTTGACTAAAGATCTACTTCC 59.666 37.037 0.00 0.00 37.93 3.46
5925 7934 8.256611 TGCATGTTTGACTAAAGATCTACTTC 57.743 34.615 0.00 0.00 37.93 3.01
5926 7935 8.798859 ATGCATGTTTGACTAAAGATCTACTT 57.201 30.769 0.00 0.00 40.98 2.24
5927 7936 8.798859 AATGCATGTTTGACTAAAGATCTACT 57.201 30.769 0.00 0.00 28.23 2.57
5928 7937 8.887717 AGAATGCATGTTTGACTAAAGATCTAC 58.112 33.333 0.00 0.00 28.23 2.59
5929 7938 9.453572 AAGAATGCATGTTTGACTAAAGATCTA 57.546 29.630 0.00 0.00 28.23 1.98
5930 7939 7.934855 AGAATGCATGTTTGACTAAAGATCT 57.065 32.000 0.00 0.00 28.23 2.75
5931 7940 8.457261 AGAAGAATGCATGTTTGACTAAAGATC 58.543 33.333 0.00 0.00 28.23 2.75
5932 7941 8.345724 AGAAGAATGCATGTTTGACTAAAGAT 57.654 30.769 0.00 0.00 30.61 2.40
5933 7942 7.094634 GGAGAAGAATGCATGTTTGACTAAAGA 60.095 37.037 0.00 0.00 0.00 2.52
5934 7943 7.025963 GGAGAAGAATGCATGTTTGACTAAAG 58.974 38.462 0.00 0.00 0.00 1.85
5935 7944 6.716628 AGGAGAAGAATGCATGTTTGACTAAA 59.283 34.615 0.00 0.00 0.00 1.85
5936 7945 6.240894 AGGAGAAGAATGCATGTTTGACTAA 58.759 36.000 0.00 0.00 0.00 2.24
5937 7946 5.809001 AGGAGAAGAATGCATGTTTGACTA 58.191 37.500 0.00 0.00 0.00 2.59
5938 7947 4.660168 AGGAGAAGAATGCATGTTTGACT 58.340 39.130 0.00 0.00 0.00 3.41
5939 7948 4.699257 AGAGGAGAAGAATGCATGTTTGAC 59.301 41.667 0.00 0.00 0.00 3.18
5940 7949 4.914983 AGAGGAGAAGAATGCATGTTTGA 58.085 39.130 0.00 0.00 0.00 2.69
5941 7950 5.296283 CCTAGAGGAGAAGAATGCATGTTTG 59.704 44.000 0.00 0.00 37.39 2.93
5942 7951 5.435291 CCTAGAGGAGAAGAATGCATGTTT 58.565 41.667 0.00 0.00 37.39 2.83
5943 7952 4.685575 GCCTAGAGGAGAAGAATGCATGTT 60.686 45.833 0.00 0.00 37.39 2.71
5944 7953 3.181456 GCCTAGAGGAGAAGAATGCATGT 60.181 47.826 0.00 0.00 37.39 3.21
5945 7954 3.181457 TGCCTAGAGGAGAAGAATGCATG 60.181 47.826 0.00 0.00 37.39 4.06
5946 7955 3.044156 TGCCTAGAGGAGAAGAATGCAT 58.956 45.455 0.00 0.00 37.39 3.96
5947 7956 2.169352 GTGCCTAGAGGAGAAGAATGCA 59.831 50.000 0.00 0.00 37.39 3.96
5948 7957 2.484594 GGTGCCTAGAGGAGAAGAATGC 60.485 54.545 0.00 0.00 37.39 3.56
5949 7958 3.037549 AGGTGCCTAGAGGAGAAGAATG 58.962 50.000 0.00 0.00 37.39 2.67
5950 7959 3.413105 AGGTGCCTAGAGGAGAAGAAT 57.587 47.619 0.00 0.00 37.39 2.40
5951 7960 2.930109 AGGTGCCTAGAGGAGAAGAA 57.070 50.000 0.00 0.00 37.39 2.52
5952 7961 3.011369 TGTTAGGTGCCTAGAGGAGAAGA 59.989 47.826 0.00 0.00 37.39 2.87
5953 7962 3.131400 GTGTTAGGTGCCTAGAGGAGAAG 59.869 52.174 0.00 0.00 37.39 2.85
5954 7963 3.097614 GTGTTAGGTGCCTAGAGGAGAA 58.902 50.000 0.00 0.00 37.39 2.87
5955 7964 2.312140 AGTGTTAGGTGCCTAGAGGAGA 59.688 50.000 0.00 0.00 37.39 3.71
5956 7965 2.428890 CAGTGTTAGGTGCCTAGAGGAG 59.571 54.545 0.00 0.00 37.39 3.69
5957 7966 2.042569 TCAGTGTTAGGTGCCTAGAGGA 59.957 50.000 0.00 0.00 37.39 3.71
5958 7967 2.428890 CTCAGTGTTAGGTGCCTAGAGG 59.571 54.545 0.00 0.00 38.53 3.69
5959 7968 2.159170 GCTCAGTGTTAGGTGCCTAGAG 60.159 54.545 0.00 3.26 0.00 2.43
5960 7969 1.825474 GCTCAGTGTTAGGTGCCTAGA 59.175 52.381 0.00 0.00 0.00 2.43
5961 7970 1.550524 TGCTCAGTGTTAGGTGCCTAG 59.449 52.381 0.00 0.00 0.00 3.02
5962 7971 1.639722 TGCTCAGTGTTAGGTGCCTA 58.360 50.000 0.00 0.00 0.00 3.93
5963 7972 0.764890 TTGCTCAGTGTTAGGTGCCT 59.235 50.000 0.00 0.00 0.00 4.75
5964 7973 1.826385 ATTGCTCAGTGTTAGGTGCC 58.174 50.000 0.00 0.00 0.00 5.01
5965 7974 3.077359 AGAATTGCTCAGTGTTAGGTGC 58.923 45.455 0.00 0.00 0.00 5.01
5966 7975 5.220739 GCATAGAATTGCTCAGTGTTAGGTG 60.221 44.000 0.00 0.00 39.57 4.00
5967 7976 4.878397 GCATAGAATTGCTCAGTGTTAGGT 59.122 41.667 0.00 0.00 39.57 3.08
5968 7977 4.877823 TGCATAGAATTGCTCAGTGTTAGG 59.122 41.667 0.00 0.00 43.18 2.69
5969 7978 5.583854 ACTGCATAGAATTGCTCAGTGTTAG 59.416 40.000 0.00 0.00 43.18 2.34
5970 7979 5.491070 ACTGCATAGAATTGCTCAGTGTTA 58.509 37.500 0.00 0.00 43.18 2.41
5971 7980 4.330250 ACTGCATAGAATTGCTCAGTGTT 58.670 39.130 0.00 0.00 43.18 3.32
5972 7981 3.947868 ACTGCATAGAATTGCTCAGTGT 58.052 40.909 0.00 0.00 43.18 3.55
5973 7982 4.510711 CCTACTGCATAGAATTGCTCAGTG 59.489 45.833 0.00 0.00 43.18 3.66
5974 7983 4.406972 TCCTACTGCATAGAATTGCTCAGT 59.593 41.667 0.00 0.00 43.18 3.41
5975 7984 4.953667 TCCTACTGCATAGAATTGCTCAG 58.046 43.478 0.00 0.00 43.18 3.35
5976 7985 5.357742 TTCCTACTGCATAGAATTGCTCA 57.642 39.130 0.00 0.00 43.18 4.26
5977 7986 5.180868 CCATTCCTACTGCATAGAATTGCTC 59.819 44.000 0.00 0.00 43.18 4.26
5978 7987 5.068636 CCATTCCTACTGCATAGAATTGCT 58.931 41.667 0.00 0.00 43.18 3.91
5979 7988 4.320788 GCCATTCCTACTGCATAGAATTGC 60.321 45.833 0.00 0.00 43.07 3.56
5980 7989 5.068636 AGCCATTCCTACTGCATAGAATTG 58.931 41.667 0.00 0.00 31.83 2.32
5981 7990 5.316158 AGCCATTCCTACTGCATAGAATT 57.684 39.130 0.00 0.00 31.83 2.17
5982 7991 4.989875 AGCCATTCCTACTGCATAGAAT 57.010 40.909 0.00 0.00 31.83 2.40
5983 7992 4.653801 TGTAGCCATTCCTACTGCATAGAA 59.346 41.667 0.00 0.00 38.75 2.10
5984 7993 4.223144 TGTAGCCATTCCTACTGCATAGA 58.777 43.478 0.00 0.00 38.75 1.98
5985 7994 4.607293 TGTAGCCATTCCTACTGCATAG 57.393 45.455 0.00 0.00 38.75 2.23
5986 7995 5.542251 TGTATGTAGCCATTCCTACTGCATA 59.458 40.000 0.00 0.00 37.77 3.14
5987 7996 4.347876 TGTATGTAGCCATTCCTACTGCAT 59.652 41.667 0.00 0.00 39.58 3.96
5988 7997 3.709141 TGTATGTAGCCATTCCTACTGCA 59.291 43.478 0.00 0.00 38.75 4.41
5989 7998 4.039245 TCTGTATGTAGCCATTCCTACTGC 59.961 45.833 0.00 0.00 38.75 4.40
5990 7999 5.303078 ACTCTGTATGTAGCCATTCCTACTG 59.697 44.000 0.00 0.00 38.75 2.74
5991 8000 5.303078 CACTCTGTATGTAGCCATTCCTACT 59.697 44.000 0.00 0.00 38.75 2.57
5992 8001 5.533482 CACTCTGTATGTAGCCATTCCTAC 58.467 45.833 0.00 0.00 38.50 3.18
5993 8002 4.039245 GCACTCTGTATGTAGCCATTCCTA 59.961 45.833 0.00 0.00 32.29 2.94
5994 8003 3.181461 GCACTCTGTATGTAGCCATTCCT 60.181 47.826 0.00 0.00 32.29 3.36
5995 8004 3.134458 GCACTCTGTATGTAGCCATTCC 58.866 50.000 0.00 0.00 32.29 3.01
5996 8005 3.797039 TGCACTCTGTATGTAGCCATTC 58.203 45.455 0.00 0.00 32.29 2.67
5997 8006 3.452264 TCTGCACTCTGTATGTAGCCATT 59.548 43.478 0.00 0.00 32.29 3.16
5998 8007 3.033909 TCTGCACTCTGTATGTAGCCAT 58.966 45.455 0.00 0.00 34.97 4.40
5999 8008 2.456577 TCTGCACTCTGTATGTAGCCA 58.543 47.619 0.00 0.00 30.59 4.75
6000 8009 3.742433 ATCTGCACTCTGTATGTAGCC 57.258 47.619 0.00 0.00 30.59 3.93
6001 8010 3.247173 GCAATCTGCACTCTGTATGTAGC 59.753 47.826 0.00 0.00 44.26 3.58
6015 8024 9.817365 CATAATATTACACTAGTTGCAATCTGC 57.183 33.333 0.59 0.00 45.29 4.26
6019 8028 9.627123 ACCACATAATATTACACTAGTTGCAAT 57.373 29.630 0.59 0.00 0.00 3.56
6020 8029 9.104965 GACCACATAATATTACACTAGTTGCAA 57.895 33.333 0.00 0.00 0.00 4.08
6021 8030 7.713507 GGACCACATAATATTACACTAGTTGCA 59.286 37.037 0.00 0.00 0.00 4.08
6022 8031 7.713507 TGGACCACATAATATTACACTAGTTGC 59.286 37.037 0.00 0.00 0.00 4.17
6023 8032 9.607988 TTGGACCACATAATATTACACTAGTTG 57.392 33.333 0.00 0.00 0.00 3.16
6028 8037 8.413229 GCATTTTGGACCACATAATATTACACT 58.587 33.333 0.00 0.00 30.89 3.55
6029 8038 8.194104 TGCATTTTGGACCACATAATATTACAC 58.806 33.333 0.00 0.00 30.89 2.90
6030 8039 8.298729 TGCATTTTGGACCACATAATATTACA 57.701 30.769 0.00 0.00 30.89 2.41
6031 8040 9.762933 ATTGCATTTTGGACCACATAATATTAC 57.237 29.630 0.00 0.00 30.89 1.89
6035 8044 9.593134 GTTAATTGCATTTTGGACCACATAATA 57.407 29.630 0.00 0.00 30.89 0.98
6036 8045 8.320617 AGTTAATTGCATTTTGGACCACATAAT 58.679 29.630 0.00 0.00 31.98 1.28
6037 8046 7.675062 AGTTAATTGCATTTTGGACCACATAA 58.325 30.769 0.00 0.00 0.00 1.90
6038 8047 7.178274 AGAGTTAATTGCATTTTGGACCACATA 59.822 33.333 0.00 0.00 0.00 2.29
6039 8048 6.014327 AGAGTTAATTGCATTTTGGACCACAT 60.014 34.615 0.00 0.00 0.00 3.21
6040 8049 5.304101 AGAGTTAATTGCATTTTGGACCACA 59.696 36.000 0.00 0.00 0.00 4.17
6041 8050 5.783111 AGAGTTAATTGCATTTTGGACCAC 58.217 37.500 0.00 0.00 0.00 4.16
6042 8051 7.531857 TTAGAGTTAATTGCATTTTGGACCA 57.468 32.000 0.00 0.00 0.00 4.02
6043 8052 8.825667 TTTTAGAGTTAATTGCATTTTGGACC 57.174 30.769 0.00 0.00 0.00 4.46
6065 8074 7.876582 GCCGTCCCTACTATTATGATAGTTTTT 59.123 37.037 14.68 0.00 44.73 1.94
6066 8075 7.234988 AGCCGTCCCTACTATTATGATAGTTTT 59.765 37.037 14.68 0.00 44.73 2.43
6067 8076 6.724905 AGCCGTCCCTACTATTATGATAGTTT 59.275 38.462 14.68 0.00 44.73 2.66
6068 8077 6.254522 AGCCGTCCCTACTATTATGATAGTT 58.745 40.000 14.68 1.21 44.73 2.24
6070 8079 7.055378 AGTAGCCGTCCCTACTATTATGATAG 58.945 42.308 3.05 3.05 44.57 2.08
6071 8080 6.966751 AGTAGCCGTCCCTACTATTATGATA 58.033 40.000 6.03 0.00 44.57 2.15
6072 8081 5.828871 AGTAGCCGTCCCTACTATTATGAT 58.171 41.667 6.03 0.00 44.57 2.45
6073 8082 5.252586 AGTAGCCGTCCCTACTATTATGA 57.747 43.478 6.03 0.00 44.57 2.15
6074 8083 5.979288 AAGTAGCCGTCCCTACTATTATG 57.021 43.478 7.73 0.00 45.40 1.90
6075 8084 6.546484 TGTAAGTAGCCGTCCCTACTATTAT 58.454 40.000 7.73 0.00 45.40 1.28
6076 8085 5.940617 TGTAAGTAGCCGTCCCTACTATTA 58.059 41.667 7.73 0.00 45.40 0.98
6077 8086 4.796606 TGTAAGTAGCCGTCCCTACTATT 58.203 43.478 7.73 0.00 45.40 1.73
6078 8087 4.443978 TGTAAGTAGCCGTCCCTACTAT 57.556 45.455 7.73 3.31 45.40 2.12
6079 8088 3.931907 TGTAAGTAGCCGTCCCTACTA 57.068 47.619 7.73 0.00 45.40 1.82
6081 8090 3.056607 TGTTTGTAAGTAGCCGTCCCTAC 60.057 47.826 0.00 0.00 38.34 3.18
6082 8091 3.164268 TGTTTGTAAGTAGCCGTCCCTA 58.836 45.455 0.00 0.00 0.00 3.53
7520 9564 2.363306 TGCACAGGTCCTTGAAATGT 57.637 45.000 0.00 0.00 0.00 2.71
7829 9873 1.016130 GGAGTGTCATCGGCACACAG 61.016 60.000 12.86 0.00 45.67 3.66
7883 9927 1.009675 GTGCACAGCAAACCTCACG 60.010 57.895 13.17 0.00 41.47 4.35
7945 9989 2.125147 TTGCAAGGCCGGAGATCG 60.125 61.111 5.05 0.00 38.88 3.69
8057 10101 4.979204 CGTGTACGGAAGCCTTGA 57.021 55.556 0.00 0.00 35.37 3.02
8138 10182 3.947834 CCAGTCAAAAGGCGAAGGATAAT 59.052 43.478 0.00 0.00 0.00 1.28
8180 10224 7.226720 TCGAAATGCTTCTCTAACTTTCTTTGT 59.773 33.333 0.00 0.00 0.00 2.83
8205 10249 4.156556 TCAGCAAATGCAGGTTATCACTTC 59.843 41.667 8.28 0.00 45.16 3.01
8484 10528 6.148150 GGGAAATGTTGATAACTTGTACGACA 59.852 38.462 0.00 0.00 0.00 4.35
8506 10551 7.413446 ACATCATCATTTAGAAAGAAAGGGGA 58.587 34.615 0.00 0.00 0.00 4.81
8593 10638 1.666189 GCTTCCGCTTCATAGGTGAAC 59.334 52.381 0.00 0.00 39.36 3.18
8629 10674 1.056700 ACCTATTGCTCCCGCCATCT 61.057 55.000 0.00 0.00 34.43 2.90
8653 10698 2.890311 TGGAAGTGCCAAATTCGTCATT 59.110 40.909 0.00 0.00 45.87 2.57
8755 10800 7.308450 TCATCATAGATTAAGGTTCAGGGAG 57.692 40.000 0.00 0.00 0.00 4.30
8767 10812 7.414429 GCGGCAAATAAGCATCATCATAGATTA 60.414 37.037 0.00 0.00 35.83 1.75
9043 11518 5.915196 GCAGACAAAGTTTGACCATAAAGAC 59.085 40.000 22.23 1.28 0.00 3.01
9162 11638 1.879575 CACTAGGATTCCCCTCACCA 58.120 55.000 0.00 0.00 43.31 4.17
9200 11676 5.393896 CGAGGACGAAAAACTCCTACCTATT 60.394 44.000 0.00 0.00 42.66 1.73
9217 11693 1.134901 CGTCACTCCTTCGAGGACG 59.865 63.158 13.05 13.05 45.06 4.79
9285 11762 2.966516 GGAACTCCATCTAATCCGTCCT 59.033 50.000 0.00 0.00 35.64 3.85
9290 11767 2.966516 AGTCCGGAACTCCATCTAATCC 59.033 50.000 5.23 0.00 30.02 3.01
9309 11786 2.971598 AATGCCCTGTAGCCGCAGT 61.972 57.895 0.00 0.00 35.66 4.40
9312 11789 3.211963 CCAATGCCCTGTAGCCGC 61.212 66.667 0.00 0.00 0.00 6.53
9313 11790 1.819632 GACCAATGCCCTGTAGCCG 60.820 63.158 0.00 0.00 0.00 5.52
9314 11791 1.453928 GGACCAATGCCCTGTAGCC 60.454 63.158 0.00 0.00 0.00 3.93
9315 11792 0.034089 AAGGACCAATGCCCTGTAGC 60.034 55.000 0.00 0.00 32.12 3.58
9316 11793 3.545703 CTTAAGGACCAATGCCCTGTAG 58.454 50.000 0.00 0.00 32.12 2.74
9326 11998 0.250553 CACGTGCCCTTAAGGACCAA 60.251 55.000 23.74 2.26 38.24 3.67
9359 12031 4.765339 GCCAGACCTTGTTAATAACAACCT 59.235 41.667 13.93 8.99 45.79 3.50
9369 12042 0.246635 GAGCGAGCCAGACCTTGTTA 59.753 55.000 0.00 0.00 0.00 2.41
9379 12052 3.536917 CCATACCGGAGCGAGCCA 61.537 66.667 9.46 0.00 36.56 4.75
9464 12138 7.497925 AAAATCTATATCCCAGCTCGTTTTC 57.502 36.000 0.00 0.00 0.00 2.29
9470 12144 7.040823 CCTTGTGAAAAATCTATATCCCAGCTC 60.041 40.741 0.00 0.00 0.00 4.09
9483 12157 9.880064 GTAACTAACTCTTCCTTGTGAAAAATC 57.120 33.333 0.00 0.00 31.06 2.17
9484 12158 8.847196 GGTAACTAACTCTTCCTTGTGAAAAAT 58.153 33.333 0.00 0.00 31.06 1.82
9490 12164 5.480205 GAGGGTAACTAACTCTTCCTTGTG 58.520 45.833 0.00 0.00 39.82 3.33
9496 12170 4.015764 AGACCGAGGGTAACTAACTCTTC 58.984 47.826 0.00 0.00 39.82 2.87
9502 12176 3.463048 AGGAAGACCGAGGGTAACTAA 57.537 47.619 0.00 0.00 41.83 2.24
9527 12201 1.447140 CGTTCCTTGATTCGCGGGA 60.447 57.895 6.13 0.00 0.00 5.14
9559 12233 7.282224 TCACTAGAAGTACAAAGCACACAAAAT 59.718 33.333 0.00 0.00 0.00 1.82
9598 12272 8.857694 TTATGTTTTCGAAAAGGACCTAGATT 57.142 30.769 23.08 0.29 0.00 2.40
9604 12278 9.687210 AAATAGTTTATGTTTTCGAAAAGGACC 57.313 29.630 23.08 12.10 0.00 4.46
9613 12288 7.273164 TGCATGCAGAAATAGTTTATGTTTTCG 59.727 33.333 18.46 0.00 34.50 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.