Multiple sequence alignment - TraesCS4D01G094600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G094600 chr4D 100.000 4763 0 0 1 4763 70116988 70121750 0.000000e+00 8796.0
1 TraesCS4D01G094600 chr4D 81.982 111 15 4 321 428 448377180 448377072 6.570000e-14 89.8
2 TraesCS4D01G094600 chr4D 80.556 108 15 5 321 425 416145143 416145247 1.420000e-10 78.7
3 TraesCS4D01G094600 chr4A 96.123 3843 109 19 946 4763 522292962 522296789 0.000000e+00 6235.0
4 TraesCS4D01G094600 chr4A 93.780 418 16 4 426 843 522292436 522292843 1.880000e-173 619.0
5 TraesCS4D01G094600 chr4B 95.888 3307 99 16 928 4213 103771772 103775062 0.000000e+00 5319.0
6 TraesCS4D01G094600 chr4B 96.774 310 10 0 534 843 103771331 103771640 7.070000e-143 518.0
7 TraesCS4D01G094600 chr4B 87.838 148 16 2 4616 4763 103775260 103775405 6.340000e-39 172.0
8 TraesCS4D01G094600 chr5D 79.351 925 172 14 2079 2992 197152615 197151699 2.420000e-177 632.0
9 TraesCS4D01G094600 chr5D 91.166 283 22 3 1 282 5689371 5689651 9.670000e-102 381.0
10 TraesCS4D01G094600 chr5D 83.036 112 10 8 324 430 139149557 139149664 5.080000e-15 93.5
11 TraesCS4D01G094600 chr5D 81.739 115 15 5 321 432 30726049 30726160 1.830000e-14 91.6
12 TraesCS4D01G094600 chr5B 79.158 926 172 16 2076 2989 213250215 213251131 5.240000e-174 621.0
13 TraesCS4D01G094600 chr5B 81.416 113 12 8 325 433 580696757 580696650 3.050000e-12 84.2
14 TraesCS4D01G094600 chr5B 80.342 117 14 8 326 437 429033485 429033373 3.950000e-11 80.5
15 TraesCS4D01G094600 chr5A 78.811 925 177 16 2076 2989 227923540 227924456 5.270000e-169 604.0
16 TraesCS4D01G094600 chr7A 83.174 523 79 8 2290 2809 558756224 558755708 2.010000e-128 470.0
17 TraesCS4D01G094600 chr7A 82.199 191 32 2 3269 3458 558755082 558754893 3.810000e-36 163.0
18 TraesCS4D01G094600 chr6D 89.646 367 33 3 4213 4575 420896061 420896426 3.360000e-126 462.0
19 TraesCS4D01G094600 chr6D 87.945 365 38 4 4212 4572 123967180 123967542 4.410000e-115 425.0
20 TraesCS4D01G094600 chr6D 91.815 281 23 0 1 281 435871857 435871577 4.470000e-105 392.0
21 TraesCS4D01G094600 chr6D 75.566 221 49 4 2485 2703 335375780 335375563 2.340000e-18 104.0
22 TraesCS4D01G094600 chr7D 82.792 523 81 8 2290 2809 492221175 492220659 4.340000e-125 459.0
23 TraesCS4D01G094600 chr7D 89.011 364 36 2 4212 4572 477837312 477836950 9.400000e-122 448.0
24 TraesCS4D01G094600 chr7D 89.326 356 34 2 4220 4572 579247866 579248220 1.220000e-120 444.0
25 TraesCS4D01G094600 chr7D 91.409 291 24 1 1 291 55576475 55576186 9.600000e-107 398.0
26 TraesCS4D01G094600 chr7D 83.246 191 30 2 3269 3458 492219999 492219810 1.760000e-39 174.0
27 TraesCS4D01G094600 chr7B 83.644 483 70 8 2330 2809 521617088 521616612 3.380000e-121 446.0
28 TraesCS4D01G094600 chr7B 81.915 188 32 2 3272 3458 521615960 521615774 1.770000e-34 158.0
29 TraesCS4D01G094600 chr3D 88.430 363 36 4 4214 4572 600110279 600110639 2.630000e-117 433.0
30 TraesCS4D01G094600 chr3D 87.738 367 40 3 4213 4575 590219344 590219709 1.580000e-114 424.0
31 TraesCS4D01G094600 chr2D 87.912 364 39 3 4213 4572 630766301 630766663 1.580000e-114 424.0
32 TraesCS4D01G094600 chr2D 92.527 281 21 0 1 281 634049705 634049425 2.060000e-108 403.0
33 TraesCS4D01G094600 chr2D 90.909 143 10 2 286 425 59702024 59702166 6.290000e-44 189.0
34 TraesCS4D01G094600 chrUn 93.594 281 18 0 1 281 467485601 467485881 2.050000e-113 420.0
35 TraesCS4D01G094600 chrUn 90.780 282 23 3 1 282 365394382 365394660 1.620000e-99 374.0
36 TraesCS4D01G094600 chr2B 87.879 363 36 3 4221 4575 77774732 77774370 2.050000e-113 420.0
37 TraesCS4D01G094600 chr2A 91.166 283 23 2 1 282 143026686 143026967 2.690000e-102 383.0
38 TraesCS4D01G094600 chr1B 91.135 282 22 3 1 282 602539831 602540109 3.480000e-101 379.0
39 TraesCS4D01G094600 chr1B 90.780 282 23 3 1 282 602526898 602527176 1.620000e-99 374.0
40 TraesCS4D01G094600 chr3A 97.917 48 1 0 378 425 719800199 719800246 3.050000e-12 84.2
41 TraesCS4D01G094600 chr3B 95.833 48 2 0 378 425 582468983 582468936 1.420000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G094600 chr4D 70116988 70121750 4762 False 8796.0 8796 100.0000 1 4763 1 chr4D.!!$F1 4762
1 TraesCS4D01G094600 chr4A 522292436 522296789 4353 False 3427.0 6235 94.9515 426 4763 2 chr4A.!!$F1 4337
2 TraesCS4D01G094600 chr4B 103771331 103775405 4074 False 2003.0 5319 93.5000 534 4763 3 chr4B.!!$F1 4229
3 TraesCS4D01G094600 chr5D 197151699 197152615 916 True 632.0 632 79.3510 2079 2992 1 chr5D.!!$R1 913
4 TraesCS4D01G094600 chr5B 213250215 213251131 916 False 621.0 621 79.1580 2076 2989 1 chr5B.!!$F1 913
5 TraesCS4D01G094600 chr5A 227923540 227924456 916 False 604.0 604 78.8110 2076 2989 1 chr5A.!!$F1 913
6 TraesCS4D01G094600 chr7A 558754893 558756224 1331 True 316.5 470 82.6865 2290 3458 2 chr7A.!!$R1 1168
7 TraesCS4D01G094600 chr7D 492219810 492221175 1365 True 316.5 459 83.0190 2290 3458 2 chr7D.!!$R3 1168
8 TraesCS4D01G094600 chr7B 521615774 521617088 1314 True 302.0 446 82.7795 2330 3458 2 chr7B.!!$R1 1128

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
30 31 0.033781 TGTCGTAAGGGTTCCAACGG 59.966 55.000 10.43 0.0 36.36 4.44 F
32 33 0.033781 TCGTAAGGGTTCCAACGGTG 59.966 55.000 0.00 0.0 36.36 4.94 F
239 240 0.099436 GCTAAAAGTGATGGCCGCTG 59.901 55.000 0.00 0.0 35.44 5.18 F
240 241 0.099436 CTAAAAGTGATGGCCGCTGC 59.901 55.000 0.00 0.0 35.44 5.25 F
355 356 0.108615 CGACACGAATCTCCAGCCTT 60.109 55.000 0.00 0.0 0.00 4.35 F
1509 1562 0.532573 TGAAGGAGCAGGCTTCTACG 59.467 55.000 1.78 0.0 30.29 3.51 F
2286 2348 0.533755 GCCGCAGCAAGATCTGGTAT 60.534 55.000 0.00 0.0 39.53 2.73 F
3506 3796 2.016961 CCGATCGCCATTGGACAAG 58.983 57.895 10.32 0.0 35.65 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1509 1562 1.609841 CCTACGGTTTCCTTGGTGTCC 60.610 57.143 0.00 0.00 0.00 4.02 R
1821 1874 1.991121 TCGTATCATCGGGGTTAGCT 58.009 50.000 0.00 0.00 0.00 3.32 R
1822 1875 2.295349 TCTTCGTATCATCGGGGTTAGC 59.705 50.000 0.00 0.00 0.00 3.09 R
1954 2007 2.355481 GTTTGTCGACTCCGCCGT 60.355 61.111 17.92 0.00 35.37 5.68 R
2074 2136 2.356313 CAGCTTCCAGACGTGCGT 60.356 61.111 0.00 0.00 0.00 5.24 R
3213 3371 1.005394 GTTCCGGACGCTCTTCCAA 60.005 57.895 1.83 0.00 35.04 3.53 R
3526 3820 0.107848 ACCTTACACCTACCGCATGC 60.108 55.000 7.91 7.91 0.00 4.06 R
4587 4886 0.034337 GCGGGCGGGATGATAAACTA 59.966 55.000 0.00 0.00 0.00 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.561733 TCGAAGAGCATGTCGTAAGG 57.438 50.000 3.72 0.00 38.41 2.69
21 22 1.134367 TCGAAGAGCATGTCGTAAGGG 59.866 52.381 3.72 0.00 38.41 3.95
22 23 1.135083 CGAAGAGCATGTCGTAAGGGT 60.135 52.381 0.00 0.00 38.47 4.34
23 24 2.674177 CGAAGAGCATGTCGTAAGGGTT 60.674 50.000 0.00 0.00 38.47 4.11
24 25 2.674796 AGAGCATGTCGTAAGGGTTC 57.325 50.000 0.00 0.00 38.47 3.62
25 26 1.207329 AGAGCATGTCGTAAGGGTTCC 59.793 52.381 0.00 0.00 38.47 3.62
26 27 0.981183 AGCATGTCGTAAGGGTTCCA 59.019 50.000 0.00 0.00 38.47 3.53
27 28 1.349688 AGCATGTCGTAAGGGTTCCAA 59.650 47.619 0.00 0.00 38.47 3.53
28 29 1.467342 GCATGTCGTAAGGGTTCCAAC 59.533 52.381 0.00 0.00 38.47 3.77
29 30 1.730064 CATGTCGTAAGGGTTCCAACG 59.270 52.381 5.78 5.78 36.80 4.10
30 31 0.033781 TGTCGTAAGGGTTCCAACGG 59.966 55.000 10.43 0.00 36.36 4.44
31 32 0.033920 GTCGTAAGGGTTCCAACGGT 59.966 55.000 10.43 0.00 36.36 4.83
32 33 0.033781 TCGTAAGGGTTCCAACGGTG 59.966 55.000 0.00 0.00 36.36 4.94
33 34 0.033781 CGTAAGGGTTCCAACGGTGA 59.966 55.000 0.00 0.00 33.55 4.02
34 35 1.540797 CGTAAGGGTTCCAACGGTGAA 60.541 52.381 0.00 0.00 33.55 3.18
35 36 2.574450 GTAAGGGTTCCAACGGTGAAA 58.426 47.619 0.00 0.00 0.00 2.69
36 37 1.687563 AAGGGTTCCAACGGTGAAAG 58.312 50.000 0.00 0.00 0.00 2.62
37 38 0.822121 AGGGTTCCAACGGTGAAAGC 60.822 55.000 0.00 0.00 0.00 3.51
52 53 5.949735 GGTGAAAGCGGATCTTAATTTTGA 58.050 37.500 0.00 0.00 33.88 2.69
53 54 6.564328 GGTGAAAGCGGATCTTAATTTTGAT 58.436 36.000 0.00 0.00 33.88 2.57
54 55 6.473455 GGTGAAAGCGGATCTTAATTTTGATG 59.527 38.462 0.00 0.00 33.88 3.07
55 56 7.029563 GTGAAAGCGGATCTTAATTTTGATGT 58.970 34.615 0.00 0.00 33.88 3.06
56 57 7.542130 GTGAAAGCGGATCTTAATTTTGATGTT 59.458 33.333 0.00 0.00 33.88 2.71
57 58 8.087750 TGAAAGCGGATCTTAATTTTGATGTTT 58.912 29.630 0.00 0.00 33.88 2.83
58 59 7.816945 AAGCGGATCTTAATTTTGATGTTTG 57.183 32.000 0.00 0.00 32.10 2.93
59 60 6.332630 AGCGGATCTTAATTTTGATGTTTGG 58.667 36.000 0.00 0.00 0.00 3.28
60 61 6.071391 AGCGGATCTTAATTTTGATGTTTGGT 60.071 34.615 0.00 0.00 0.00 3.67
61 62 6.589907 GCGGATCTTAATTTTGATGTTTGGTT 59.410 34.615 0.00 0.00 0.00 3.67
62 63 7.201435 GCGGATCTTAATTTTGATGTTTGGTTC 60.201 37.037 0.00 0.00 0.00 3.62
63 64 7.812191 CGGATCTTAATTTTGATGTTTGGTTCA 59.188 33.333 0.00 0.00 0.00 3.18
64 65 9.487790 GGATCTTAATTTTGATGTTTGGTTCAA 57.512 29.630 0.00 0.00 0.00 2.69
73 74 8.430801 TTTGATGTTTGGTTCAAAAGTTATGG 57.569 30.769 0.00 0.00 38.52 2.74
74 75 5.988561 TGATGTTTGGTTCAAAAGTTATGGC 59.011 36.000 0.00 0.00 35.03 4.40
75 76 5.606348 TGTTTGGTTCAAAAGTTATGGCT 57.394 34.783 0.00 0.00 35.03 4.75
76 77 5.983540 TGTTTGGTTCAAAAGTTATGGCTT 58.016 33.333 0.00 0.00 35.03 4.35
77 78 6.410540 TGTTTGGTTCAAAAGTTATGGCTTT 58.589 32.000 0.00 0.00 40.07 3.51
78 79 6.881602 TGTTTGGTTCAAAAGTTATGGCTTTT 59.118 30.769 0.00 0.00 46.08 2.27
79 80 8.041323 TGTTTGGTTCAAAAGTTATGGCTTTTA 58.959 29.630 8.19 0.00 44.13 1.52
80 81 8.884726 GTTTGGTTCAAAAGTTATGGCTTTTAA 58.115 29.630 8.19 0.00 44.13 1.52
81 82 9.449719 TTTGGTTCAAAAGTTATGGCTTTTAAA 57.550 25.926 8.19 0.33 44.13 1.52
82 83 9.449719 TTGGTTCAAAAGTTATGGCTTTTAAAA 57.550 25.926 0.00 0.00 44.13 1.52
83 84 9.620259 TGGTTCAAAAGTTATGGCTTTTAAAAT 57.380 25.926 0.09 0.00 44.13 1.82
84 85 9.877137 GGTTCAAAAGTTATGGCTTTTAAAATG 57.123 29.630 0.09 0.00 44.13 2.32
95 96 8.607441 ATGGCTTTTAAAATGAAAAGGAACTC 57.393 30.769 0.09 0.00 43.63 3.01
96 97 6.989759 TGGCTTTTAAAATGAAAAGGAACTCC 59.010 34.615 0.09 3.96 43.63 3.85
97 98 6.989759 GGCTTTTAAAATGAAAAGGAACTCCA 59.010 34.615 0.09 0.00 43.63 3.86
98 99 7.497579 GGCTTTTAAAATGAAAAGGAACTCCAA 59.502 33.333 0.09 0.00 43.63 3.53
99 100 8.888716 GCTTTTAAAATGAAAAGGAACTCCAAA 58.111 29.630 0.09 0.00 43.63 3.28
107 108 9.492973 AATGAAAAGGAACTCCAAATTAATGTG 57.507 29.630 0.00 0.00 38.49 3.21
108 109 8.017418 TGAAAAGGAACTCCAAATTAATGTGT 57.983 30.769 4.91 0.00 38.49 3.72
109 110 8.482128 TGAAAAGGAACTCCAAATTAATGTGTT 58.518 29.630 4.91 0.00 38.49 3.32
110 111 8.887036 AAAAGGAACTCCAAATTAATGTGTTC 57.113 30.769 4.91 7.51 38.49 3.18
111 112 7.595819 AAGGAACTCCAAATTAATGTGTTCA 57.404 32.000 15.39 0.00 38.49 3.18
112 113 6.981722 AGGAACTCCAAATTAATGTGTTCAC 58.018 36.000 15.39 0.00 38.89 3.18
113 114 6.549364 AGGAACTCCAAATTAATGTGTTCACA 59.451 34.615 8.09 8.09 38.89 3.58
114 115 7.233348 AGGAACTCCAAATTAATGTGTTCACAT 59.767 33.333 11.97 11.97 38.89 3.21
115 116 7.542130 GGAACTCCAAATTAATGTGTTCACATC 59.458 37.037 17.02 3.17 35.47 3.06
116 117 7.765695 ACTCCAAATTAATGTGTTCACATCT 57.234 32.000 17.02 10.77 0.00 2.90
117 118 7.596494 ACTCCAAATTAATGTGTTCACATCTG 58.404 34.615 17.02 10.25 0.00 2.90
118 119 7.448161 ACTCCAAATTAATGTGTTCACATCTGA 59.552 33.333 17.02 8.12 0.00 3.27
119 120 7.819644 TCCAAATTAATGTGTTCACATCTGAG 58.180 34.615 17.02 7.24 0.00 3.35
120 121 7.448161 TCCAAATTAATGTGTTCACATCTGAGT 59.552 33.333 17.02 5.78 0.00 3.41
121 122 7.539710 CCAAATTAATGTGTTCACATCTGAGTG 59.460 37.037 17.02 12.67 40.85 3.51
122 123 5.611796 TTAATGTGTTCACATCTGAGTGC 57.388 39.130 17.02 0.00 39.35 4.40
123 124 2.916702 TGTGTTCACATCTGAGTGCT 57.083 45.000 1.23 0.00 39.35 4.40
124 125 3.198409 TGTGTTCACATCTGAGTGCTT 57.802 42.857 1.23 0.00 39.35 3.91
125 126 3.544684 TGTGTTCACATCTGAGTGCTTT 58.455 40.909 1.23 0.00 39.35 3.51
126 127 3.947196 TGTGTTCACATCTGAGTGCTTTT 59.053 39.130 1.23 0.00 39.35 2.27
127 128 4.035558 TGTGTTCACATCTGAGTGCTTTTC 59.964 41.667 1.23 0.00 39.35 2.29
128 129 4.035558 GTGTTCACATCTGAGTGCTTTTCA 59.964 41.667 0.00 0.00 39.35 2.69
129 130 4.639755 TGTTCACATCTGAGTGCTTTTCAA 59.360 37.500 0.00 0.00 39.35 2.69
130 131 5.300034 TGTTCACATCTGAGTGCTTTTCAAT 59.700 36.000 0.00 0.00 39.35 2.57
131 132 5.618056 TCACATCTGAGTGCTTTTCAATC 57.382 39.130 0.00 0.00 40.01 2.67
132 133 4.456911 TCACATCTGAGTGCTTTTCAATCC 59.543 41.667 0.00 0.00 38.91 3.01
133 134 3.438087 ACATCTGAGTGCTTTTCAATCCG 59.562 43.478 0.00 0.00 38.91 4.18
134 135 3.126001 TCTGAGTGCTTTTCAATCCGT 57.874 42.857 0.00 0.00 38.91 4.69
135 136 4.265904 TCTGAGTGCTTTTCAATCCGTA 57.734 40.909 0.00 0.00 38.91 4.02
136 137 4.637276 TCTGAGTGCTTTTCAATCCGTAA 58.363 39.130 0.00 0.00 38.91 3.18
137 138 5.245531 TCTGAGTGCTTTTCAATCCGTAAT 58.754 37.500 0.00 0.00 38.91 1.89
138 139 5.705441 TCTGAGTGCTTTTCAATCCGTAATT 59.295 36.000 0.00 0.00 38.91 1.40
139 140 6.876789 TCTGAGTGCTTTTCAATCCGTAATTA 59.123 34.615 0.00 0.00 38.91 1.40
140 141 7.389330 TCTGAGTGCTTTTCAATCCGTAATTAA 59.611 33.333 0.00 0.00 38.91 1.40
141 142 7.877003 TGAGTGCTTTTCAATCCGTAATTAAA 58.123 30.769 0.00 0.00 38.91 1.52
142 143 8.353684 TGAGTGCTTTTCAATCCGTAATTAAAA 58.646 29.630 0.00 0.00 38.91 1.52
143 144 8.742554 AGTGCTTTTCAATCCGTAATTAAAAG 57.257 30.769 0.00 0.00 34.81 2.27
144 145 7.328493 AGTGCTTTTCAATCCGTAATTAAAAGC 59.672 33.333 18.49 18.49 43.45 3.51
145 146 7.115663 GTGCTTTTCAATCCGTAATTAAAAGCA 59.884 33.333 22.17 22.17 45.89 3.91
146 147 7.115663 TGCTTTTCAATCCGTAATTAAAAGCAC 59.884 33.333 22.17 0.00 44.96 4.40
147 148 7.555639 TTTTCAATCCGTAATTAAAAGCACG 57.444 32.000 0.00 0.00 0.00 5.34
148 149 5.866335 TCAATCCGTAATTAAAAGCACGT 57.134 34.783 0.00 0.00 32.66 4.49
149 150 6.243811 TCAATCCGTAATTAAAAGCACGTT 57.756 33.333 0.00 0.00 32.66 3.99
150 151 6.081049 TCAATCCGTAATTAAAAGCACGTTG 58.919 36.000 0.00 0.00 32.66 4.10
151 152 3.812656 TCCGTAATTAAAAGCACGTTGC 58.187 40.909 2.28 2.28 45.46 4.17
160 161 2.339712 GCACGTTGCATGCCCTTT 59.660 55.556 16.68 0.00 44.26 3.11
161 162 1.300853 GCACGTTGCATGCCCTTTT 60.301 52.632 16.68 0.00 44.26 2.27
162 163 0.879839 GCACGTTGCATGCCCTTTTT 60.880 50.000 16.68 0.00 44.26 1.94
163 164 1.604185 GCACGTTGCATGCCCTTTTTA 60.604 47.619 16.68 0.00 44.26 1.52
164 165 2.058057 CACGTTGCATGCCCTTTTTAC 58.942 47.619 16.68 1.19 0.00 2.01
165 166 1.000394 ACGTTGCATGCCCTTTTTACC 60.000 47.619 16.68 0.00 0.00 2.85
166 167 1.272212 CGTTGCATGCCCTTTTTACCT 59.728 47.619 16.68 0.00 0.00 3.08
167 168 2.288763 CGTTGCATGCCCTTTTTACCTT 60.289 45.455 16.68 0.00 0.00 3.50
168 169 3.738982 GTTGCATGCCCTTTTTACCTTT 58.261 40.909 16.68 0.00 0.00 3.11
169 170 4.133820 GTTGCATGCCCTTTTTACCTTTT 58.866 39.130 16.68 0.00 0.00 2.27
170 171 4.429854 TGCATGCCCTTTTTACCTTTTT 57.570 36.364 16.68 0.00 0.00 1.94
220 221 9.710979 TTTTTGTTTGATAGAGACGTAAACTTG 57.289 29.630 8.75 0.00 33.61 3.16
221 222 6.462073 TGTTTGATAGAGACGTAAACTTGC 57.538 37.500 8.75 0.00 33.61 4.01
222 223 6.220930 TGTTTGATAGAGACGTAAACTTGCT 58.779 36.000 8.75 0.00 33.61 3.91
223 224 7.372714 TGTTTGATAGAGACGTAAACTTGCTA 58.627 34.615 8.75 0.00 33.61 3.49
224 225 7.868922 TGTTTGATAGAGACGTAAACTTGCTAA 59.131 33.333 8.75 0.00 33.61 3.09
225 226 8.706035 GTTTGATAGAGACGTAAACTTGCTAAA 58.294 33.333 0.00 0.00 0.00 1.85
226 227 8.821147 TTGATAGAGACGTAAACTTGCTAAAA 57.179 30.769 0.00 0.00 0.00 1.52
227 228 8.462143 TGATAGAGACGTAAACTTGCTAAAAG 57.538 34.615 0.00 0.00 0.00 2.27
228 229 8.086522 TGATAGAGACGTAAACTTGCTAAAAGT 58.913 33.333 0.00 0.00 0.00 2.66
229 230 6.526566 AGAGACGTAAACTTGCTAAAAGTG 57.473 37.500 0.00 0.00 0.00 3.16
230 231 6.278363 AGAGACGTAAACTTGCTAAAAGTGA 58.722 36.000 0.00 0.00 0.00 3.41
231 232 6.929606 AGAGACGTAAACTTGCTAAAAGTGAT 59.070 34.615 0.00 0.00 0.00 3.06
232 233 6.888430 AGACGTAAACTTGCTAAAAGTGATG 58.112 36.000 0.00 0.00 0.00 3.07
233 234 5.997385 ACGTAAACTTGCTAAAAGTGATGG 58.003 37.500 0.00 0.00 0.00 3.51
234 235 4.851558 CGTAAACTTGCTAAAAGTGATGGC 59.148 41.667 0.00 0.00 0.00 4.40
235 236 3.942130 AACTTGCTAAAAGTGATGGCC 57.058 42.857 0.00 0.00 0.00 5.36
236 237 1.812571 ACTTGCTAAAAGTGATGGCCG 59.187 47.619 0.00 0.00 0.00 6.13
237 238 0.525761 TTGCTAAAAGTGATGGCCGC 59.474 50.000 0.00 0.00 0.00 6.53
238 239 0.322456 TGCTAAAAGTGATGGCCGCT 60.322 50.000 0.00 0.00 37.17 5.52
239 240 0.099436 GCTAAAAGTGATGGCCGCTG 59.901 55.000 0.00 0.00 35.44 5.18
240 241 0.099436 CTAAAAGTGATGGCCGCTGC 59.901 55.000 0.00 0.00 35.44 5.25
241 242 1.643868 TAAAAGTGATGGCCGCTGCG 61.644 55.000 16.34 16.34 38.85 5.18
274 275 4.577246 CCCTGCCGCTCGCTAGAC 62.577 72.222 0.00 0.00 38.78 2.59
275 276 4.914420 CCTGCCGCTCGCTAGACG 62.914 72.222 0.00 0.00 45.62 4.18
286 287 3.237522 GCTAGACGCGTCCAGTAAG 57.762 57.895 34.08 22.90 0.00 2.34
287 288 0.450983 GCTAGACGCGTCCAGTAAGT 59.549 55.000 34.08 17.23 0.00 2.24
288 289 1.667724 GCTAGACGCGTCCAGTAAGTA 59.332 52.381 34.08 17.43 0.00 2.24
289 290 2.096496 GCTAGACGCGTCCAGTAAGTAA 59.904 50.000 34.08 8.80 0.00 2.24
290 291 3.243002 GCTAGACGCGTCCAGTAAGTAAT 60.243 47.826 34.08 15.00 0.00 1.89
291 292 4.024556 GCTAGACGCGTCCAGTAAGTAATA 60.025 45.833 34.08 15.33 0.00 0.98
292 293 4.284378 AGACGCGTCCAGTAAGTAATAC 57.716 45.455 34.08 6.15 34.52 1.89
293 294 3.691118 AGACGCGTCCAGTAAGTAATACA 59.309 43.478 34.08 0.00 36.94 2.29
294 295 3.762779 ACGCGTCCAGTAAGTAATACAC 58.237 45.455 5.58 0.00 36.94 2.90
295 296 3.111098 CGCGTCCAGTAAGTAATACACC 58.889 50.000 0.00 0.00 36.94 4.16
296 297 3.451526 GCGTCCAGTAAGTAATACACCC 58.548 50.000 0.00 0.00 36.94 4.61
297 298 3.699067 CGTCCAGTAAGTAATACACCCG 58.301 50.000 0.00 0.00 36.94 5.28
298 299 3.451526 GTCCAGTAAGTAATACACCCGC 58.548 50.000 0.00 0.00 36.94 6.13
299 300 2.099592 TCCAGTAAGTAATACACCCGCG 59.900 50.000 0.00 0.00 36.94 6.46
300 301 2.159198 CCAGTAAGTAATACACCCGCGT 60.159 50.000 4.92 0.00 36.94 6.01
301 302 3.111098 CAGTAAGTAATACACCCGCGTC 58.889 50.000 4.92 0.00 36.94 5.19
302 303 2.111756 GTAAGTAATACACCCGCGTCG 58.888 52.381 4.92 0.00 34.46 5.12
303 304 0.527565 AAGTAATACACCCGCGTCGT 59.472 50.000 4.92 0.88 0.00 4.34
304 305 0.527565 AGTAATACACCCGCGTCGTT 59.472 50.000 4.92 0.00 0.00 3.85
305 306 0.641783 GTAATACACCCGCGTCGTTG 59.358 55.000 4.92 0.00 0.00 4.10
306 307 1.077645 TAATACACCCGCGTCGTTGC 61.078 55.000 4.92 0.00 0.00 4.17
326 327 3.715618 CGCAGCTCGTATGTGTAAAAA 57.284 42.857 0.00 0.00 0.00 1.94
342 343 1.902840 AAAAACAAACAGCCGACACG 58.097 45.000 0.00 0.00 0.00 4.49
343 344 1.088306 AAAACAAACAGCCGACACGA 58.912 45.000 0.00 0.00 0.00 4.35
344 345 1.088306 AAACAAACAGCCGACACGAA 58.912 45.000 0.00 0.00 0.00 3.85
345 346 1.305201 AACAAACAGCCGACACGAAT 58.695 45.000 0.00 0.00 0.00 3.34
346 347 0.865769 ACAAACAGCCGACACGAATC 59.134 50.000 0.00 0.00 0.00 2.52
347 348 1.148310 CAAACAGCCGACACGAATCT 58.852 50.000 0.00 0.00 0.00 2.40
348 349 1.126846 CAAACAGCCGACACGAATCTC 59.873 52.381 0.00 0.00 0.00 2.75
349 350 0.389948 AACAGCCGACACGAATCTCC 60.390 55.000 0.00 0.00 0.00 3.71
350 351 1.215382 CAGCCGACACGAATCTCCA 59.785 57.895 0.00 0.00 0.00 3.86
351 352 0.803768 CAGCCGACACGAATCTCCAG 60.804 60.000 0.00 0.00 0.00 3.86
352 353 2.167861 GCCGACACGAATCTCCAGC 61.168 63.158 0.00 0.00 0.00 4.85
353 354 1.519455 CCGACACGAATCTCCAGCC 60.519 63.158 0.00 0.00 0.00 4.85
354 355 1.513158 CGACACGAATCTCCAGCCT 59.487 57.895 0.00 0.00 0.00 4.58
355 356 0.108615 CGACACGAATCTCCAGCCTT 60.109 55.000 0.00 0.00 0.00 4.35
356 357 1.134367 CGACACGAATCTCCAGCCTTA 59.866 52.381 0.00 0.00 0.00 2.69
357 358 2.416836 CGACACGAATCTCCAGCCTTAA 60.417 50.000 0.00 0.00 0.00 1.85
358 359 3.190874 GACACGAATCTCCAGCCTTAAG 58.809 50.000 0.00 0.00 0.00 1.85
359 360 2.832129 ACACGAATCTCCAGCCTTAAGA 59.168 45.455 3.36 0.00 0.00 2.10
360 361 3.452627 ACACGAATCTCCAGCCTTAAGAT 59.547 43.478 3.36 0.00 0.00 2.40
361 362 4.054671 CACGAATCTCCAGCCTTAAGATC 58.945 47.826 3.36 0.00 0.00 2.75
362 363 3.706594 ACGAATCTCCAGCCTTAAGATCA 59.293 43.478 3.36 0.00 0.00 2.92
363 364 4.346418 ACGAATCTCCAGCCTTAAGATCAT 59.654 41.667 3.36 0.00 0.00 2.45
364 365 5.540337 ACGAATCTCCAGCCTTAAGATCATA 59.460 40.000 3.36 0.00 0.00 2.15
365 366 5.866633 CGAATCTCCAGCCTTAAGATCATAC 59.133 44.000 3.36 0.00 0.00 2.39
366 367 6.295011 CGAATCTCCAGCCTTAAGATCATACT 60.295 42.308 3.36 0.00 0.00 2.12
367 368 5.798125 TCTCCAGCCTTAAGATCATACTG 57.202 43.478 3.36 1.96 0.00 2.74
368 369 5.211973 TCTCCAGCCTTAAGATCATACTGT 58.788 41.667 3.36 0.00 0.00 3.55
369 370 5.303078 TCTCCAGCCTTAAGATCATACTGTC 59.697 44.000 3.36 0.00 0.00 3.51
370 371 4.962362 TCCAGCCTTAAGATCATACTGTCA 59.038 41.667 3.36 0.00 0.00 3.58
371 372 5.069648 TCCAGCCTTAAGATCATACTGTCAG 59.930 44.000 3.36 0.00 0.00 3.51
372 373 5.069648 CCAGCCTTAAGATCATACTGTCAGA 59.930 44.000 6.91 0.00 0.00 3.27
373 374 6.407412 CCAGCCTTAAGATCATACTGTCAGAA 60.407 42.308 6.91 0.00 0.00 3.02
374 375 7.044181 CAGCCTTAAGATCATACTGTCAGAAA 58.956 38.462 6.91 0.00 0.00 2.52
375 376 7.550551 CAGCCTTAAGATCATACTGTCAGAAAA 59.449 37.037 6.91 0.00 0.00 2.29
376 377 8.103305 AGCCTTAAGATCATACTGTCAGAAAAA 58.897 33.333 6.91 0.00 0.00 1.94
377 378 8.897752 GCCTTAAGATCATACTGTCAGAAAAAT 58.102 33.333 6.91 0.00 0.00 1.82
383 384 9.676861 AGATCATACTGTCAGAAAAATGAATGA 57.323 29.630 6.91 3.35 31.03 2.57
384 385 9.932699 GATCATACTGTCAGAAAAATGAATGAG 57.067 33.333 6.91 0.00 30.37 2.90
385 386 9.676861 ATCATACTGTCAGAAAAATGAATGAGA 57.323 29.630 6.91 0.00 30.37 3.27
386 387 8.939929 TCATACTGTCAGAAAAATGAATGAGAC 58.060 33.333 6.91 0.00 0.00 3.36
387 388 6.566197 ACTGTCAGAAAAATGAATGAGACC 57.434 37.500 6.91 0.00 0.00 3.85
388 389 6.064060 ACTGTCAGAAAAATGAATGAGACCA 58.936 36.000 6.91 0.00 0.00 4.02
389 390 6.547141 ACTGTCAGAAAAATGAATGAGACCAA 59.453 34.615 6.91 0.00 0.00 3.67
390 391 7.232127 ACTGTCAGAAAAATGAATGAGACCAAT 59.768 33.333 6.91 0.00 0.00 3.16
391 392 7.954835 TGTCAGAAAAATGAATGAGACCAATT 58.045 30.769 0.00 0.00 0.00 2.32
392 393 8.423349 TGTCAGAAAAATGAATGAGACCAATTT 58.577 29.630 0.00 0.00 0.00 1.82
393 394 9.912634 GTCAGAAAAATGAATGAGACCAATTTA 57.087 29.630 0.00 0.00 0.00 1.40
402 403 7.765307 TGAATGAGACCAATTTATTTCTCAGC 58.235 34.615 10.79 7.41 45.78 4.26
403 404 7.613022 TGAATGAGACCAATTTATTTCTCAGCT 59.387 33.333 10.79 0.00 45.78 4.24
404 405 9.113838 GAATGAGACCAATTTATTTCTCAGCTA 57.886 33.333 10.79 0.00 45.78 3.32
405 406 8.674263 ATGAGACCAATTTATTTCTCAGCTAG 57.326 34.615 10.79 0.00 45.78 3.42
406 407 6.540189 TGAGACCAATTTATTTCTCAGCTAGC 59.460 38.462 6.62 6.62 39.62 3.42
407 408 6.657875 AGACCAATTTATTTCTCAGCTAGCT 58.342 36.000 12.68 12.68 0.00 3.32
408 409 6.541641 AGACCAATTTATTTCTCAGCTAGCTG 59.458 38.462 34.48 34.48 44.86 4.24
466 467 4.439057 TCGTGCATTTCTGTCCCTATTAC 58.561 43.478 0.00 0.00 0.00 1.89
470 471 5.590259 GTGCATTTCTGTCCCTATTACATGT 59.410 40.000 2.69 2.69 0.00 3.21
471 472 6.095440 GTGCATTTCTGTCCCTATTACATGTT 59.905 38.462 2.30 0.00 0.00 2.71
479 480 9.308000 TCTGTCCCTATTACATGTTCAAATTTT 57.692 29.630 2.30 0.00 0.00 1.82
481 482 8.310382 TGTCCCTATTACATGTTCAAATTTTGG 58.690 33.333 2.30 2.14 0.00 3.28
482 483 8.527810 GTCCCTATTACATGTTCAAATTTTGGA 58.472 33.333 2.30 2.64 0.00 3.53
483 484 9.265862 TCCCTATTACATGTTCAAATTTTGGAT 57.734 29.630 2.30 0.00 0.00 3.41
528 529 9.103861 GGATTTGAAATGTTGGTGAAGTTTTTA 57.896 29.630 0.00 0.00 0.00 1.52
778 779 4.471904 TGTCGCTAGGAATTGAAGTGAT 57.528 40.909 0.00 0.00 0.00 3.06
843 844 4.196971 GTGCCACTAATTCCGAGGTATTT 58.803 43.478 0.00 0.00 0.00 1.40
844 845 4.035208 GTGCCACTAATTCCGAGGTATTTG 59.965 45.833 0.00 1.19 0.00 2.32
845 846 3.003378 GCCACTAATTCCGAGGTATTTGC 59.997 47.826 0.00 0.00 0.00 3.68
846 847 4.451900 CCACTAATTCCGAGGTATTTGCT 58.548 43.478 0.00 0.00 0.00 3.91
847 848 4.273480 CCACTAATTCCGAGGTATTTGCTG 59.727 45.833 0.00 1.07 0.00 4.41
849 850 5.354234 CACTAATTCCGAGGTATTTGCTGTT 59.646 40.000 0.00 0.00 0.00 3.16
850 851 4.965119 AATTCCGAGGTATTTGCTGTTC 57.035 40.909 0.00 0.00 0.00 3.18
853 854 3.596214 TCCGAGGTATTTGCTGTTCTTC 58.404 45.455 0.00 0.00 0.00 2.87
854 855 3.007506 TCCGAGGTATTTGCTGTTCTTCA 59.992 43.478 0.00 0.00 0.00 3.02
855 856 3.941483 CCGAGGTATTTGCTGTTCTTCAT 59.059 43.478 0.00 0.00 0.00 2.57
856 857 5.105106 TCCGAGGTATTTGCTGTTCTTCATA 60.105 40.000 0.00 0.00 0.00 2.15
857 858 5.006746 CCGAGGTATTTGCTGTTCTTCATAC 59.993 44.000 0.00 0.00 0.00 2.39
858 859 5.812642 CGAGGTATTTGCTGTTCTTCATACT 59.187 40.000 0.00 0.00 0.00 2.12
860 861 7.168302 CGAGGTATTTGCTGTTCTTCATACTAG 59.832 40.741 0.00 0.00 0.00 2.57
861 862 7.275920 AGGTATTTGCTGTTCTTCATACTAGG 58.724 38.462 0.00 0.00 0.00 3.02
862 863 7.125811 AGGTATTTGCTGTTCTTCATACTAGGA 59.874 37.037 0.00 0.00 0.00 2.94
863 864 7.769044 GGTATTTGCTGTTCTTCATACTAGGAA 59.231 37.037 0.00 0.00 0.00 3.36
870 905 6.749139 TGTTCTTCATACTAGGAATCATCGG 58.251 40.000 0.00 0.00 0.00 4.18
876 911 2.050144 ACTAGGAATCATCGGCATGGT 58.950 47.619 0.00 0.00 0.00 3.55
890 925 2.616001 GGCATGGTGGCATTTTGAATGT 60.616 45.455 0.00 0.00 43.14 2.71
891 926 2.674357 GCATGGTGGCATTTTGAATGTC 59.326 45.455 0.00 0.00 0.00 3.06
892 927 3.865302 GCATGGTGGCATTTTGAATGTCA 60.865 43.478 4.00 4.00 0.00 3.58
899 934 5.640357 GTGGCATTTTGAATGTCATGATGTT 59.360 36.000 10.68 0.00 35.96 2.71
900 935 6.148150 GTGGCATTTTGAATGTCATGATGTTT 59.852 34.615 10.68 0.00 35.96 2.83
901 936 6.369340 TGGCATTTTGAATGTCATGATGTTTC 59.631 34.615 0.00 3.64 0.00 2.78
902 937 6.183360 GGCATTTTGAATGTCATGATGTTTCC 60.183 38.462 0.00 0.00 0.00 3.13
903 938 6.183360 GCATTTTGAATGTCATGATGTTTCCC 60.183 38.462 0.00 0.00 0.00 3.97
924 959 1.039785 TCAGGATCTGACCTCTGCGG 61.040 60.000 0.00 0.00 38.32 5.69
925 960 2.107953 GGATCTGACCTCTGCGGC 59.892 66.667 0.00 0.00 35.61 6.53
945 998 1.336332 CCAGAGAGTGAGGACGTTGTG 60.336 57.143 0.00 0.00 0.00 3.33
946 999 1.609072 CAGAGAGTGAGGACGTTGTGA 59.391 52.381 0.00 0.00 0.00 3.58
947 1000 1.883275 AGAGAGTGAGGACGTTGTGAG 59.117 52.381 0.00 0.00 0.00 3.51
948 1001 0.962489 AGAGTGAGGACGTTGTGAGG 59.038 55.000 0.00 0.00 0.00 3.86
949 1002 0.959553 GAGTGAGGACGTTGTGAGGA 59.040 55.000 0.00 0.00 0.00 3.71
950 1003 1.340248 GAGTGAGGACGTTGTGAGGAA 59.660 52.381 0.00 0.00 0.00 3.36
962 1015 3.895232 TGTGAGGAAGAGGAAGCATAC 57.105 47.619 0.00 0.00 0.00 2.39
1206 1259 1.758906 GGAGAAGGAGGAGGACCGG 60.759 68.421 0.00 0.00 41.83 5.28
1463 1516 4.432741 GGCTGCTTCCCAGGGGAC 62.433 72.222 6.55 0.00 45.11 4.46
1509 1562 0.532573 TGAAGGAGCAGGCTTCTACG 59.467 55.000 1.78 0.00 30.29 3.51
1707 1760 1.812571 GTGAAGGATGACGGCAACAAT 59.187 47.619 0.00 0.00 0.00 2.71
1822 1875 4.570663 CCGAAGCCTCCGCCGTAG 62.571 72.222 0.00 0.00 34.57 3.51
1827 1880 2.279318 GCCTCCGCCGTAGCTAAC 60.279 66.667 0.00 0.00 36.60 2.34
1833 1886 2.853290 CGCCGTAGCTAACCCCGAT 61.853 63.158 0.00 0.00 36.60 4.18
1885 1938 0.742635 GCAGAAGCTTCTTCCGGAGG 60.743 60.000 26.44 14.07 42.98 4.30
2286 2348 0.533755 GCCGCAGCAAGATCTGGTAT 60.534 55.000 0.00 0.00 39.53 2.73
3504 3794 2.513666 GCCGATCGCCATTGGACA 60.514 61.111 10.32 0.00 35.65 4.02
3506 3796 2.016961 CCGATCGCCATTGGACAAG 58.983 57.895 10.32 0.00 35.65 3.16
3523 3817 6.503524 TGGACAAGAACTAAGAAATTTGTGC 58.496 36.000 0.00 0.00 37.38 4.57
3524 3818 6.096141 TGGACAAGAACTAAGAAATTTGTGCA 59.904 34.615 0.00 5.47 42.04 4.57
3525 3819 7.147976 GGACAAGAACTAAGAAATTTGTGCAT 58.852 34.615 0.00 0.00 37.02 3.96
3526 3820 7.115378 GGACAAGAACTAAGAAATTTGTGCATG 59.885 37.037 0.00 0.00 37.02 4.06
3527 3821 6.421801 ACAAGAACTAAGAAATTTGTGCATGC 59.578 34.615 11.82 11.82 0.00 4.06
3528 3822 6.088016 AGAACTAAGAAATTTGTGCATGCA 57.912 33.333 18.46 18.46 0.00 3.96
3546 3840 1.677820 GCATGCGGTAGGTGTAAGGTT 60.678 52.381 0.00 0.00 0.00 3.50
3806 4100 1.146358 GGAGTTAACAGCTAGCGCGG 61.146 60.000 8.83 5.80 42.32 6.46
3840 4134 1.466856 TGGTCTGATTGATTGGCTGC 58.533 50.000 0.00 0.00 0.00 5.25
3908 4202 4.164843 ACATAGGTTCTGTGTTGGTGTT 57.835 40.909 0.00 0.00 32.04 3.32
4000 4294 5.683859 CGATGGAATAGTACGTAGGTGTAC 58.316 45.833 0.00 0.00 44.00 2.90
4107 4401 6.390504 TGATCCCCACTTAGTTACATCCTAT 58.609 40.000 0.00 0.00 0.00 2.57
4131 4425 5.899547 TGGTTTCTCTGCTCTCCTATGATTA 59.100 40.000 0.00 0.00 0.00 1.75
4172 4466 2.047179 GCACCTCTCCACGGTTCC 60.047 66.667 0.00 0.00 30.82 3.62
4220 4514 0.029300 CATTTATCGCAACGGGCCTG 59.971 55.000 11.02 11.02 40.31 4.85
4229 4523 1.474879 GCAACGGGCCTGCTAAAAATA 59.525 47.619 12.89 0.00 36.84 1.40
4236 4530 4.272748 CGGGCCTGCTAAAAATAAGTCTAC 59.727 45.833 0.84 0.00 0.00 2.59
4260 4554 5.470368 TGAGATTTAACCAAGTCTCAGTCG 58.530 41.667 8.09 0.00 46.61 4.18
4276 4570 2.419673 CAGTCGACCATGCAGCATTTTA 59.580 45.455 13.01 0.00 0.00 1.52
4279 4573 3.016031 TCGACCATGCAGCATTTTATGT 58.984 40.909 4.69 0.00 0.00 2.29
4284 4578 3.978855 CCATGCAGCATTTTATGTCATCG 59.021 43.478 4.69 0.00 0.00 3.84
4319 4614 1.366111 CCTACCGGTTGCAACATCCG 61.366 60.000 29.55 23.23 43.71 4.18
4325 4620 0.951558 GGTTGCAACATCCGTCTTGT 59.048 50.000 29.55 0.00 0.00 3.16
4340 4635 3.003275 CGTCTTGTTGGTTGTAGCATGTT 59.997 43.478 0.00 0.00 0.00 2.71
4341 4636 4.290155 GTCTTGTTGGTTGTAGCATGTTG 58.710 43.478 0.00 0.00 0.00 3.33
4358 4653 4.380843 TGTTGTCCCTCATTGGTTGTAT 57.619 40.909 0.00 0.00 0.00 2.29
4359 4654 4.735369 TGTTGTCCCTCATTGGTTGTATT 58.265 39.130 0.00 0.00 0.00 1.89
4360 4655 5.144100 TGTTGTCCCTCATTGGTTGTATTT 58.856 37.500 0.00 0.00 0.00 1.40
4362 4657 4.991776 TGTCCCTCATTGGTTGTATTTCA 58.008 39.130 0.00 0.00 0.00 2.69
4364 4659 5.418524 TGTCCCTCATTGGTTGTATTTCATG 59.581 40.000 0.00 0.00 0.00 3.07
4365 4660 5.418840 GTCCCTCATTGGTTGTATTTCATGT 59.581 40.000 0.00 0.00 0.00 3.21
4366 4661 5.652014 TCCCTCATTGGTTGTATTTCATGTC 59.348 40.000 0.00 0.00 0.00 3.06
4367 4662 5.418524 CCCTCATTGGTTGTATTTCATGTCA 59.581 40.000 0.00 0.00 0.00 3.58
4368 4663 6.324819 CCTCATTGGTTGTATTTCATGTCAC 58.675 40.000 0.00 0.00 0.00 3.67
4371 4666 5.703978 TTGGTTGTATTTCATGTCACCAG 57.296 39.130 0.00 0.00 35.49 4.00
4401 4699 2.734606 TCTTTCATTGACGGTTGTAGCG 59.265 45.455 0.00 0.00 45.69 4.26
4448 4746 6.777526 TTTATTGTTGTTGCTTGCAATACC 57.222 33.333 11.32 2.16 34.70 2.73
4484 4783 1.705337 CCGCCGTTTGTAGCATCCAG 61.705 60.000 0.00 0.00 0.00 3.86
4495 4794 3.200593 CATCCAGCCGTGCAGCTC 61.201 66.667 0.00 0.00 42.61 4.09
4531 4830 2.016704 GCTCACGTCACACGACTGG 61.017 63.158 2.48 0.00 46.05 4.00
4546 4845 3.006110 ACGACTGGGACTTCGTTAAATCA 59.994 43.478 0.00 0.00 43.16 2.57
4572 4871 2.814919 CGACTGAGTTCTAGACACACCT 59.185 50.000 0.00 0.00 0.00 4.00
4578 4877 5.950883 TGAGTTCTAGACACACCTTTATCG 58.049 41.667 0.00 0.00 0.00 2.92
4579 4878 4.745649 AGTTCTAGACACACCTTTATCGC 58.254 43.478 0.00 0.00 0.00 4.58
4587 4886 4.134563 ACACACCTTTATCGCAAACTCTT 58.865 39.130 0.00 0.00 0.00 2.85
4588 4887 5.302360 ACACACCTTTATCGCAAACTCTTA 58.698 37.500 0.00 0.00 0.00 2.10
4599 4898 6.903883 TCGCAAACTCTTAGTTTATCATCC 57.096 37.500 4.81 0.00 45.84 3.51
4600 4899 5.815740 TCGCAAACTCTTAGTTTATCATCCC 59.184 40.000 4.81 0.00 45.84 3.85
4643 5108 5.241403 TCACCTTTCATATCAACCACAGT 57.759 39.130 0.00 0.00 0.00 3.55
4660 5125 0.548031 AGTTCCATGCCACCGATCAT 59.452 50.000 0.00 0.00 0.00 2.45
4677 5142 5.404366 CCGATCATGATTTTCATTTCCATGC 59.596 40.000 10.14 0.00 34.28 4.06
4685 5150 7.485810 TGATTTTCATTTCCATGCATCTAGTG 58.514 34.615 0.00 0.00 0.00 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.416836 CCCTTACGACATGCTCTTCGAA 60.417 50.000 10.08 0.00 38.63 3.71
1 2 1.134367 CCCTTACGACATGCTCTTCGA 59.866 52.381 10.08 0.00 38.63 3.71
2 3 1.135083 ACCCTTACGACATGCTCTTCG 60.135 52.381 2.22 2.22 41.14 3.79
3 4 2.674796 ACCCTTACGACATGCTCTTC 57.325 50.000 0.00 0.00 0.00 2.87
4 5 2.354805 GGAACCCTTACGACATGCTCTT 60.355 50.000 0.00 0.00 0.00 2.85
5 6 1.207329 GGAACCCTTACGACATGCTCT 59.793 52.381 0.00 0.00 0.00 4.09
6 7 1.066430 TGGAACCCTTACGACATGCTC 60.066 52.381 0.00 0.00 0.00 4.26
7 8 0.981183 TGGAACCCTTACGACATGCT 59.019 50.000 0.00 0.00 0.00 3.79
8 9 1.467342 GTTGGAACCCTTACGACATGC 59.533 52.381 0.00 0.00 0.00 4.06
9 10 1.730064 CGTTGGAACCCTTACGACATG 59.270 52.381 0.00 0.00 35.48 3.21
10 11 1.338389 CCGTTGGAACCCTTACGACAT 60.338 52.381 10.96 0.00 35.48 3.06
11 12 0.033781 CCGTTGGAACCCTTACGACA 59.966 55.000 10.96 0.00 35.48 4.35
12 13 0.033920 ACCGTTGGAACCCTTACGAC 59.966 55.000 10.96 0.00 35.48 4.34
13 14 0.033781 CACCGTTGGAACCCTTACGA 59.966 55.000 10.96 0.00 35.48 3.43
14 15 0.033781 TCACCGTTGGAACCCTTACG 59.966 55.000 0.00 0.00 34.13 3.18
15 16 2.259266 TTCACCGTTGGAACCCTTAC 57.741 50.000 0.00 0.00 0.00 2.34
16 17 2.853705 CTTTCACCGTTGGAACCCTTA 58.146 47.619 0.00 0.00 0.00 2.69
17 18 1.687563 CTTTCACCGTTGGAACCCTT 58.312 50.000 0.00 0.00 0.00 3.95
18 19 0.822121 GCTTTCACCGTTGGAACCCT 60.822 55.000 0.00 0.00 0.00 4.34
19 20 1.658114 GCTTTCACCGTTGGAACCC 59.342 57.895 0.00 0.00 0.00 4.11
20 21 1.281656 CGCTTTCACCGTTGGAACC 59.718 57.895 0.00 0.00 0.00 3.62
21 22 1.161563 TCCGCTTTCACCGTTGGAAC 61.162 55.000 0.00 0.00 0.00 3.62
22 23 0.250553 ATCCGCTTTCACCGTTGGAA 60.251 50.000 0.00 0.00 0.00 3.53
23 24 0.672401 GATCCGCTTTCACCGTTGGA 60.672 55.000 0.00 0.00 0.00 3.53
24 25 0.673644 AGATCCGCTTTCACCGTTGG 60.674 55.000 0.00 0.00 0.00 3.77
25 26 1.156736 AAGATCCGCTTTCACCGTTG 58.843 50.000 0.00 0.00 31.11 4.10
26 27 2.754946 TAAGATCCGCTTTCACCGTT 57.245 45.000 0.00 0.00 38.05 4.44
27 28 2.754946 TTAAGATCCGCTTTCACCGT 57.245 45.000 0.00 0.00 38.05 4.83
28 29 4.616181 AAATTAAGATCCGCTTTCACCG 57.384 40.909 0.00 0.00 38.05 4.94
29 30 5.949735 TCAAAATTAAGATCCGCTTTCACC 58.050 37.500 0.00 0.00 38.05 4.02
30 31 7.029563 ACATCAAAATTAAGATCCGCTTTCAC 58.970 34.615 0.00 0.00 38.05 3.18
31 32 7.156876 ACATCAAAATTAAGATCCGCTTTCA 57.843 32.000 0.00 0.00 38.05 2.69
32 33 8.375465 CAAACATCAAAATTAAGATCCGCTTTC 58.625 33.333 0.00 0.00 38.05 2.62
33 34 7.331687 CCAAACATCAAAATTAAGATCCGCTTT 59.668 33.333 0.00 0.00 38.05 3.51
34 35 6.813152 CCAAACATCAAAATTAAGATCCGCTT 59.187 34.615 0.00 0.00 40.68 4.68
35 36 6.071391 ACCAAACATCAAAATTAAGATCCGCT 60.071 34.615 0.00 0.00 0.00 5.52
36 37 6.099341 ACCAAACATCAAAATTAAGATCCGC 58.901 36.000 0.00 0.00 0.00 5.54
37 38 7.812191 TGAACCAAACATCAAAATTAAGATCCG 59.188 33.333 0.00 0.00 0.00 4.18
38 39 9.487790 TTGAACCAAACATCAAAATTAAGATCC 57.512 29.630 0.00 0.00 32.89 3.36
48 49 7.011857 GCCATAACTTTTGAACCAAACATCAAA 59.988 33.333 0.00 0.00 42.17 2.69
49 50 6.481644 GCCATAACTTTTGAACCAAACATCAA 59.518 34.615 0.00 0.00 32.79 2.57
50 51 5.988561 GCCATAACTTTTGAACCAAACATCA 59.011 36.000 0.00 0.00 32.79 3.07
51 52 6.223120 AGCCATAACTTTTGAACCAAACATC 58.777 36.000 0.00 0.00 32.79 3.06
52 53 6.173427 AGCCATAACTTTTGAACCAAACAT 57.827 33.333 0.00 0.00 32.79 2.71
53 54 5.606348 AGCCATAACTTTTGAACCAAACA 57.394 34.783 0.00 0.00 32.79 2.83
54 55 6.918892 AAAGCCATAACTTTTGAACCAAAC 57.081 33.333 0.00 0.00 36.47 2.93
55 56 9.449719 TTTAAAAGCCATAACTTTTGAACCAAA 57.550 25.926 11.46 2.70 46.56 3.28
56 57 9.449719 TTTTAAAAGCCATAACTTTTGAACCAA 57.550 25.926 11.46 0.00 46.56 3.67
57 58 9.620259 ATTTTAAAAGCCATAACTTTTGAACCA 57.380 25.926 6.79 0.00 46.56 3.67
58 59 9.877137 CATTTTAAAAGCCATAACTTTTGAACC 57.123 29.630 6.79 0.00 46.56 3.62
69 70 9.705290 GAGTTCCTTTTCATTTTAAAAGCCATA 57.295 29.630 6.79 0.00 42.54 2.74
70 71 7.661437 GGAGTTCCTTTTCATTTTAAAAGCCAT 59.339 33.333 6.79 0.00 42.54 4.40
71 72 6.989759 GGAGTTCCTTTTCATTTTAAAAGCCA 59.010 34.615 6.79 0.00 42.54 4.75
72 73 6.989759 TGGAGTTCCTTTTCATTTTAAAAGCC 59.010 34.615 6.79 1.32 42.54 4.35
73 74 8.432110 TTGGAGTTCCTTTTCATTTTAAAAGC 57.568 30.769 6.79 0.00 42.54 3.51
81 82 9.492973 CACATTAATTTGGAGTTCCTTTTCATT 57.507 29.630 0.00 0.00 36.82 2.57
82 83 8.650490 ACACATTAATTTGGAGTTCCTTTTCAT 58.350 29.630 6.56 0.00 36.82 2.57
83 84 8.017418 ACACATTAATTTGGAGTTCCTTTTCA 57.983 30.769 6.56 0.00 36.82 2.69
84 85 8.887036 AACACATTAATTTGGAGTTCCTTTTC 57.113 30.769 6.56 0.00 36.82 2.29
85 86 8.482128 TGAACACATTAATTTGGAGTTCCTTTT 58.518 29.630 6.56 0.00 36.10 2.27
86 87 7.926018 GTGAACACATTAATTTGGAGTTCCTTT 59.074 33.333 6.56 0.00 36.10 3.11
87 88 7.069331 TGTGAACACATTAATTTGGAGTTCCTT 59.931 33.333 6.56 0.00 36.10 3.36
88 89 6.549364 TGTGAACACATTAATTTGGAGTTCCT 59.451 34.615 6.56 0.00 36.10 3.36
89 90 6.744112 TGTGAACACATTAATTTGGAGTTCC 58.256 36.000 6.56 0.00 36.10 3.62
104 105 2.916702 AGCACTCAGATGTGAACACA 57.083 45.000 10.04 10.04 46.44 3.72
105 106 4.035558 TGAAAAGCACTCAGATGTGAACAC 59.964 41.667 0.00 0.00 40.12 3.32
106 107 4.198530 TGAAAAGCACTCAGATGTGAACA 58.801 39.130 0.00 0.00 40.12 3.18
107 108 4.818534 TGAAAAGCACTCAGATGTGAAC 57.181 40.909 0.00 0.00 40.12 3.18
108 109 5.048504 GGATTGAAAAGCACTCAGATGTGAA 60.049 40.000 0.00 0.00 40.12 3.18
109 110 4.456911 GGATTGAAAAGCACTCAGATGTGA 59.543 41.667 0.00 0.00 40.12 3.58
110 111 4.670992 CGGATTGAAAAGCACTCAGATGTG 60.671 45.833 0.00 0.00 40.62 3.21
111 112 3.438087 CGGATTGAAAAGCACTCAGATGT 59.562 43.478 0.00 0.00 30.69 3.06
112 113 3.438087 ACGGATTGAAAAGCACTCAGATG 59.562 43.478 0.00 0.00 30.69 2.90
113 114 3.679389 ACGGATTGAAAAGCACTCAGAT 58.321 40.909 0.00 0.00 30.69 2.90
114 115 3.126001 ACGGATTGAAAAGCACTCAGA 57.874 42.857 0.00 0.00 30.69 3.27
115 116 5.551760 ATTACGGATTGAAAAGCACTCAG 57.448 39.130 0.00 0.00 30.69 3.35
116 117 5.957842 AATTACGGATTGAAAAGCACTCA 57.042 34.783 0.00 0.00 30.69 3.41
117 118 8.736751 TTTTAATTACGGATTGAAAAGCACTC 57.263 30.769 0.00 0.00 32.29 3.51
118 119 7.328493 GCTTTTAATTACGGATTGAAAAGCACT 59.672 33.333 23.56 0.00 43.22 4.40
119 120 7.115663 TGCTTTTAATTACGGATTGAAAAGCAC 59.884 33.333 25.86 8.44 45.00 4.40
120 121 7.115663 GTGCTTTTAATTACGGATTGAAAAGCA 59.884 33.333 25.86 25.86 45.92 3.91
121 122 7.445040 GTGCTTTTAATTACGGATTGAAAAGC 58.555 34.615 22.43 22.43 43.51 3.51
122 123 7.325097 ACGTGCTTTTAATTACGGATTGAAAAG 59.675 33.333 7.50 7.50 40.56 2.27
123 124 7.140048 ACGTGCTTTTAATTACGGATTGAAAA 58.860 30.769 0.00 0.00 40.56 2.29
124 125 6.670233 ACGTGCTTTTAATTACGGATTGAAA 58.330 32.000 0.00 0.00 40.56 2.69
125 126 6.243811 ACGTGCTTTTAATTACGGATTGAA 57.756 33.333 0.00 0.00 40.56 2.69
126 127 5.866335 ACGTGCTTTTAATTACGGATTGA 57.134 34.783 0.00 0.00 40.56 2.57
127 128 5.219951 GCAACGTGCTTTTAATTACGGATTG 60.220 40.000 0.00 0.00 40.96 2.67
128 129 4.854839 GCAACGTGCTTTTAATTACGGATT 59.145 37.500 0.00 0.00 40.96 3.01
129 130 4.083217 TGCAACGTGCTTTTAATTACGGAT 60.083 37.500 10.54 0.00 45.31 4.18
130 131 3.250280 TGCAACGTGCTTTTAATTACGGA 59.750 39.130 10.54 0.00 45.31 4.69
131 132 3.556513 TGCAACGTGCTTTTAATTACGG 58.443 40.909 10.54 0.00 45.31 4.02
132 133 4.488573 GCATGCAACGTGCTTTTAATTACG 60.489 41.667 14.21 0.00 45.31 3.18
133 134 4.201580 GGCATGCAACGTGCTTTTAATTAC 60.202 41.667 21.36 0.00 45.31 1.89
134 135 3.923461 GGCATGCAACGTGCTTTTAATTA 59.077 39.130 21.36 0.00 45.31 1.40
135 136 2.736192 GGCATGCAACGTGCTTTTAATT 59.264 40.909 21.36 0.00 45.31 1.40
136 137 2.336667 GGCATGCAACGTGCTTTTAAT 58.663 42.857 21.36 0.00 45.31 1.40
137 138 1.604185 GGGCATGCAACGTGCTTTTAA 60.604 47.619 21.36 0.00 45.31 1.52
138 139 0.038709 GGGCATGCAACGTGCTTTTA 60.039 50.000 21.36 0.00 45.31 1.52
139 140 1.300853 GGGCATGCAACGTGCTTTT 60.301 52.632 21.36 0.00 45.31 2.27
140 141 1.747325 AAGGGCATGCAACGTGCTTT 61.747 50.000 21.36 0.11 45.31 3.51
141 142 1.747325 AAAGGGCATGCAACGTGCTT 61.747 50.000 21.36 0.00 45.31 3.91
142 143 1.747325 AAAAGGGCATGCAACGTGCT 61.747 50.000 21.36 0.00 45.31 4.40
143 144 0.879839 AAAAAGGGCATGCAACGTGC 60.880 50.000 21.36 2.03 45.29 5.34
144 145 2.058057 GTAAAAAGGGCATGCAACGTG 58.942 47.619 21.36 0.00 0.00 4.49
145 146 1.000394 GGTAAAAAGGGCATGCAACGT 60.000 47.619 21.36 7.15 0.00 3.99
146 147 1.272212 AGGTAAAAAGGGCATGCAACG 59.728 47.619 21.36 0.00 0.00 4.10
147 148 3.401033 AAGGTAAAAAGGGCATGCAAC 57.599 42.857 21.36 11.90 0.00 4.17
148 149 4.429854 AAAAGGTAAAAAGGGCATGCAA 57.570 36.364 21.36 0.00 0.00 4.08
149 150 4.429854 AAAAAGGTAAAAAGGGCATGCA 57.570 36.364 21.36 0.00 0.00 3.96
194 195 9.710979 CAAGTTTACGTCTCTATCAAACAAAAA 57.289 29.630 9.72 0.00 32.75 1.94
195 196 7.853929 GCAAGTTTACGTCTCTATCAAACAAAA 59.146 33.333 9.72 0.00 32.75 2.44
196 197 7.225931 AGCAAGTTTACGTCTCTATCAAACAAA 59.774 33.333 9.72 0.00 32.75 2.83
197 198 6.704493 AGCAAGTTTACGTCTCTATCAAACAA 59.296 34.615 9.72 0.00 32.75 2.83
198 199 6.220930 AGCAAGTTTACGTCTCTATCAAACA 58.779 36.000 9.72 0.00 32.75 2.83
199 200 6.707599 AGCAAGTTTACGTCTCTATCAAAC 57.292 37.500 0.00 0.00 0.00 2.93
200 201 8.821147 TTTAGCAAGTTTACGTCTCTATCAAA 57.179 30.769 0.00 0.00 0.00 2.69
201 202 8.821147 TTTTAGCAAGTTTACGTCTCTATCAA 57.179 30.769 0.00 0.00 0.00 2.57
202 203 8.086522 ACTTTTAGCAAGTTTACGTCTCTATCA 58.913 33.333 0.00 0.00 0.00 2.15
203 204 8.373992 CACTTTTAGCAAGTTTACGTCTCTATC 58.626 37.037 0.00 0.00 0.00 2.08
204 205 8.086522 TCACTTTTAGCAAGTTTACGTCTCTAT 58.913 33.333 0.00 0.00 0.00 1.98
205 206 7.428020 TCACTTTTAGCAAGTTTACGTCTCTA 58.572 34.615 0.00 0.00 0.00 2.43
206 207 6.278363 TCACTTTTAGCAAGTTTACGTCTCT 58.722 36.000 0.00 0.00 0.00 3.10
207 208 6.520792 TCACTTTTAGCAAGTTTACGTCTC 57.479 37.500 0.00 0.00 0.00 3.36
208 209 6.073222 CCATCACTTTTAGCAAGTTTACGTCT 60.073 38.462 0.00 0.00 0.00 4.18
209 210 6.077838 CCATCACTTTTAGCAAGTTTACGTC 58.922 40.000 0.00 0.00 0.00 4.34
210 211 5.562113 GCCATCACTTTTAGCAAGTTTACGT 60.562 40.000 0.00 0.00 0.00 3.57
211 212 4.851558 GCCATCACTTTTAGCAAGTTTACG 59.148 41.667 0.00 0.00 0.00 3.18
212 213 5.161358 GGCCATCACTTTTAGCAAGTTTAC 58.839 41.667 0.00 0.00 0.00 2.01
213 214 4.083003 CGGCCATCACTTTTAGCAAGTTTA 60.083 41.667 2.24 0.00 0.00 2.01
214 215 3.305335 CGGCCATCACTTTTAGCAAGTTT 60.305 43.478 2.24 0.00 0.00 2.66
215 216 2.228822 CGGCCATCACTTTTAGCAAGTT 59.771 45.455 2.24 0.00 0.00 2.66
216 217 1.812571 CGGCCATCACTTTTAGCAAGT 59.187 47.619 2.24 0.00 0.00 3.16
217 218 1.468054 GCGGCCATCACTTTTAGCAAG 60.468 52.381 2.24 0.00 0.00 4.01
218 219 0.525761 GCGGCCATCACTTTTAGCAA 59.474 50.000 2.24 0.00 0.00 3.91
219 220 0.322456 AGCGGCCATCACTTTTAGCA 60.322 50.000 2.24 0.00 0.00 3.49
220 221 0.099436 CAGCGGCCATCACTTTTAGC 59.901 55.000 2.24 0.00 0.00 3.09
221 222 0.099436 GCAGCGGCCATCACTTTTAG 59.901 55.000 2.24 0.00 0.00 1.85
222 223 1.643868 CGCAGCGGCCATCACTTTTA 61.644 55.000 7.00 0.00 36.38 1.52
223 224 2.964978 GCAGCGGCCATCACTTTT 59.035 55.556 2.24 0.00 0.00 2.27
224 225 3.434319 CGCAGCGGCCATCACTTT 61.434 61.111 7.00 0.00 36.38 2.66
268 269 0.450983 ACTTACTGGACGCGTCTAGC 59.549 55.000 41.24 25.59 41.25 3.42
269 270 4.548991 ATTACTTACTGGACGCGTCTAG 57.451 45.455 40.16 40.16 42.92 2.43
270 271 4.875536 TGTATTACTTACTGGACGCGTCTA 59.124 41.667 35.50 30.10 0.00 2.59
271 272 3.691118 TGTATTACTTACTGGACGCGTCT 59.309 43.478 35.50 20.70 0.00 4.18
272 273 3.788163 GTGTATTACTTACTGGACGCGTC 59.212 47.826 30.67 30.67 0.00 5.19
273 274 3.428045 GGTGTATTACTTACTGGACGCGT 60.428 47.826 13.85 13.85 0.00 6.01
274 275 3.111098 GGTGTATTACTTACTGGACGCG 58.889 50.000 3.53 3.53 0.00 6.01
275 276 3.451526 GGGTGTATTACTTACTGGACGC 58.548 50.000 0.00 0.00 0.00 5.19
276 277 3.699067 CGGGTGTATTACTTACTGGACG 58.301 50.000 0.00 0.00 0.00 4.79
277 278 3.451526 GCGGGTGTATTACTTACTGGAC 58.548 50.000 0.00 0.00 0.00 4.02
278 279 2.099592 CGCGGGTGTATTACTTACTGGA 59.900 50.000 0.00 0.00 0.00 3.86
279 280 2.159198 ACGCGGGTGTATTACTTACTGG 60.159 50.000 12.47 0.00 0.00 4.00
280 281 3.111098 GACGCGGGTGTATTACTTACTG 58.889 50.000 10.96 0.00 0.00 2.74
281 282 2.223340 CGACGCGGGTGTATTACTTACT 60.223 50.000 10.96 0.00 0.00 2.24
282 283 2.111756 CGACGCGGGTGTATTACTTAC 58.888 52.381 10.96 0.00 0.00 2.34
283 284 1.742831 ACGACGCGGGTGTATTACTTA 59.257 47.619 10.96 0.00 0.00 2.24
284 285 0.527565 ACGACGCGGGTGTATTACTT 59.472 50.000 10.96 0.00 0.00 2.24
285 286 0.527565 AACGACGCGGGTGTATTACT 59.472 50.000 10.96 0.00 0.00 2.24
286 287 0.641783 CAACGACGCGGGTGTATTAC 59.358 55.000 10.96 0.00 0.00 1.89
287 288 1.077645 GCAACGACGCGGGTGTATTA 61.078 55.000 10.96 0.00 0.00 0.98
288 289 2.385091 GCAACGACGCGGGTGTATT 61.385 57.895 10.96 0.00 0.00 1.89
289 290 2.812178 GCAACGACGCGGGTGTAT 60.812 61.111 10.96 0.00 0.00 2.29
299 300 2.158959 ATACGAGCTGCGCAACGAC 61.159 57.895 28.25 16.28 46.04 4.34
300 301 2.158330 CATACGAGCTGCGCAACGA 61.158 57.895 28.25 16.73 46.04 3.85
301 302 2.317689 CATACGAGCTGCGCAACG 59.682 61.111 22.78 22.78 46.04 4.10
302 303 1.059369 CACATACGAGCTGCGCAAC 59.941 57.895 13.05 7.27 46.04 4.17
303 304 0.109039 TACACATACGAGCTGCGCAA 60.109 50.000 13.05 0.00 46.04 4.85
304 305 0.109039 TTACACATACGAGCTGCGCA 60.109 50.000 10.98 10.98 46.04 6.09
305 306 0.996462 TTTACACATACGAGCTGCGC 59.004 50.000 0.00 0.00 46.04 6.09
323 324 1.469308 TCGTGTCGGCTGTTTGTTTTT 59.531 42.857 0.00 0.00 0.00 1.94
324 325 1.088306 TCGTGTCGGCTGTTTGTTTT 58.912 45.000 0.00 0.00 0.00 2.43
325 326 1.088306 TTCGTGTCGGCTGTTTGTTT 58.912 45.000 0.00 0.00 0.00 2.83
326 327 1.263217 GATTCGTGTCGGCTGTTTGTT 59.737 47.619 0.00 0.00 0.00 2.83
327 328 0.865769 GATTCGTGTCGGCTGTTTGT 59.134 50.000 0.00 0.00 0.00 2.83
328 329 1.126846 GAGATTCGTGTCGGCTGTTTG 59.873 52.381 0.00 0.00 0.00 2.93
329 330 1.429463 GAGATTCGTGTCGGCTGTTT 58.571 50.000 0.00 0.00 0.00 2.83
330 331 0.389948 GGAGATTCGTGTCGGCTGTT 60.390 55.000 0.00 0.00 0.00 3.16
331 332 1.215647 GGAGATTCGTGTCGGCTGT 59.784 57.895 0.00 0.00 0.00 4.40
332 333 0.803768 CTGGAGATTCGTGTCGGCTG 60.804 60.000 0.00 0.00 0.00 4.85
333 334 1.513158 CTGGAGATTCGTGTCGGCT 59.487 57.895 0.00 0.00 0.00 5.52
334 335 2.167861 GCTGGAGATTCGTGTCGGC 61.168 63.158 0.00 0.00 0.00 5.54
335 336 1.519455 GGCTGGAGATTCGTGTCGG 60.519 63.158 0.00 0.00 0.00 4.79
336 337 0.108615 AAGGCTGGAGATTCGTGTCG 60.109 55.000 0.00 0.00 0.00 4.35
337 338 2.961526 TAAGGCTGGAGATTCGTGTC 57.038 50.000 0.00 0.00 0.00 3.67
338 339 2.832129 TCTTAAGGCTGGAGATTCGTGT 59.168 45.455 1.85 0.00 0.00 4.49
339 340 3.526931 TCTTAAGGCTGGAGATTCGTG 57.473 47.619 1.85 0.00 0.00 4.35
340 341 3.706594 TGATCTTAAGGCTGGAGATTCGT 59.293 43.478 12.49 0.00 30.64 3.85
341 342 4.327982 TGATCTTAAGGCTGGAGATTCG 57.672 45.455 12.49 0.00 30.64 3.34
342 343 6.873076 CAGTATGATCTTAAGGCTGGAGATTC 59.127 42.308 12.49 7.93 39.69 2.52
343 344 6.328672 ACAGTATGATCTTAAGGCTGGAGATT 59.671 38.462 12.49 3.22 39.69 2.40
344 345 5.843421 ACAGTATGATCTTAAGGCTGGAGAT 59.157 40.000 11.41 11.41 39.69 2.75
345 346 5.211973 ACAGTATGATCTTAAGGCTGGAGA 58.788 41.667 1.85 2.97 39.69 3.71
346 347 5.069648 TGACAGTATGATCTTAAGGCTGGAG 59.930 44.000 1.85 0.00 39.69 3.86
347 348 4.962362 TGACAGTATGATCTTAAGGCTGGA 59.038 41.667 1.85 0.00 39.69 3.86
348 349 5.069648 TCTGACAGTATGATCTTAAGGCTGG 59.930 44.000 1.85 0.00 39.69 4.85
349 350 6.154203 TCTGACAGTATGATCTTAAGGCTG 57.846 41.667 1.85 4.96 39.69 4.85
350 351 6.798427 TTCTGACAGTATGATCTTAAGGCT 57.202 37.500 1.85 0.00 39.69 4.58
351 352 7.849804 TTTTCTGACAGTATGATCTTAAGGC 57.150 36.000 1.85 0.00 39.69 4.35
357 358 9.676861 TCATTCATTTTTCTGACAGTATGATCT 57.323 29.630 1.59 0.00 39.69 2.75
358 359 9.932699 CTCATTCATTTTTCTGACAGTATGATC 57.067 33.333 1.59 0.00 39.69 2.92
359 360 9.676861 TCTCATTCATTTTTCTGACAGTATGAT 57.323 29.630 1.59 0.00 39.69 2.45
360 361 8.939929 GTCTCATTCATTTTTCTGACAGTATGA 58.060 33.333 1.59 5.51 39.69 2.15
361 362 8.180267 GGTCTCATTCATTTTTCTGACAGTATG 58.820 37.037 1.59 3.39 46.00 2.39
362 363 7.884877 TGGTCTCATTCATTTTTCTGACAGTAT 59.115 33.333 1.59 0.00 0.00 2.12
363 364 7.223584 TGGTCTCATTCATTTTTCTGACAGTA 58.776 34.615 1.59 0.00 0.00 2.74
364 365 6.064060 TGGTCTCATTCATTTTTCTGACAGT 58.936 36.000 1.59 0.00 0.00 3.55
365 366 6.564709 TGGTCTCATTCATTTTTCTGACAG 57.435 37.500 0.00 0.00 0.00 3.51
366 367 6.957920 TTGGTCTCATTCATTTTTCTGACA 57.042 33.333 0.00 0.00 0.00 3.58
367 368 8.822652 AAATTGGTCTCATTCATTTTTCTGAC 57.177 30.769 0.00 0.00 0.00 3.51
376 377 8.411683 GCTGAGAAATAAATTGGTCTCATTCAT 58.588 33.333 7.29 0.00 44.06 2.57
377 378 7.613022 AGCTGAGAAATAAATTGGTCTCATTCA 59.387 33.333 7.29 0.00 44.06 2.57
378 379 7.994194 AGCTGAGAAATAAATTGGTCTCATTC 58.006 34.615 7.29 4.38 44.06 2.67
379 380 7.951347 AGCTGAGAAATAAATTGGTCTCATT 57.049 32.000 7.29 0.00 44.06 2.57
380 381 7.228308 GCTAGCTGAGAAATAAATTGGTCTCAT 59.772 37.037 7.70 0.00 44.06 2.90
381 382 6.540189 GCTAGCTGAGAAATAAATTGGTCTCA 59.460 38.462 7.70 6.82 43.17 3.27
382 383 6.765512 AGCTAGCTGAGAAATAAATTGGTCTC 59.234 38.462 18.57 0.00 37.59 3.36
383 384 6.541641 CAGCTAGCTGAGAAATAAATTGGTCT 59.458 38.462 36.47 0.00 46.30 3.85
384 385 6.540189 TCAGCTAGCTGAGAAATAAATTGGTC 59.460 38.462 37.64 0.00 46.80 4.02
385 386 6.418101 TCAGCTAGCTGAGAAATAAATTGGT 58.582 36.000 37.64 0.00 46.80 3.67
386 387 6.932356 TCAGCTAGCTGAGAAATAAATTGG 57.068 37.500 37.64 12.39 46.80 3.16
406 407 3.691049 TTCGGTTTTGCTGAAACTCAG 57.309 42.857 13.41 0.00 46.90 3.35
407 408 3.629855 TCATTCGGTTTTGCTGAAACTCA 59.370 39.130 13.41 1.86 44.76 3.41
408 409 4.223320 TCATTCGGTTTTGCTGAAACTC 57.777 40.909 13.41 5.84 44.76 3.01
409 410 4.853924 ATCATTCGGTTTTGCTGAAACT 57.146 36.364 13.41 0.00 44.76 2.66
410 411 6.806249 TGATAATCATTCGGTTTTGCTGAAAC 59.194 34.615 7.48 7.48 44.76 2.78
411 412 6.918626 TGATAATCATTCGGTTTTGCTGAAA 58.081 32.000 0.00 0.00 44.76 2.69
412 413 6.507958 TGATAATCATTCGGTTTTGCTGAA 57.492 33.333 0.00 0.00 45.57 3.02
413 414 6.095300 ACATGATAATCATTCGGTTTTGCTGA 59.905 34.615 0.00 0.00 34.28 4.26
414 415 6.267817 ACATGATAATCATTCGGTTTTGCTG 58.732 36.000 0.00 0.00 34.28 4.41
415 416 6.455360 ACATGATAATCATTCGGTTTTGCT 57.545 33.333 0.00 0.00 34.28 3.91
416 417 7.524294 AAACATGATAATCATTCGGTTTTGC 57.476 32.000 0.00 0.00 34.28 3.68
420 421 9.663904 CGAATAAAACATGATAATCATTCGGTT 57.336 29.630 0.00 0.00 39.64 4.44
421 422 8.836413 ACGAATAAAACATGATAATCATTCGGT 58.164 29.630 22.51 13.12 44.60 4.69
422 423 9.106286 CACGAATAAAACATGATAATCATTCGG 57.894 33.333 22.51 14.31 44.60 4.30
423 424 8.621487 GCACGAATAAAACATGATAATCATTCG 58.379 33.333 19.75 19.75 45.35 3.34
424 425 9.449550 TGCACGAATAAAACATGATAATCATTC 57.550 29.630 0.00 0.13 34.28 2.67
479 480 9.699410 ATCCATACTTTCAGTTTTTCATATCCA 57.301 29.630 0.00 0.00 0.00 3.41
528 529 5.178061 CCAAGCTTTTCAGGTTTCAACTTT 58.822 37.500 0.00 0.00 38.76 2.66
530 531 3.430790 GCCAAGCTTTTCAGGTTTCAACT 60.431 43.478 0.00 0.00 38.76 3.16
566 567 2.864946 CTGTATGTGCATGTGCTCTCTC 59.135 50.000 6.55 0.00 42.66 3.20
778 779 2.821685 CCCGCAATGATCTCCCGA 59.178 61.111 0.00 0.00 0.00 5.14
819 820 1.559682 ACCTCGGAATTAGTGGCACAT 59.440 47.619 21.41 7.59 44.52 3.21
820 821 0.981183 ACCTCGGAATTAGTGGCACA 59.019 50.000 21.41 0.00 0.00 4.57
843 844 6.544928 TGATTCCTAGTATGAAGAACAGCA 57.455 37.500 0.00 0.00 0.00 4.41
844 845 6.364706 CGATGATTCCTAGTATGAAGAACAGC 59.635 42.308 0.00 0.00 0.00 4.40
845 846 6.865726 CCGATGATTCCTAGTATGAAGAACAG 59.134 42.308 0.00 0.00 0.00 3.16
846 847 6.738731 GCCGATGATTCCTAGTATGAAGAACA 60.739 42.308 0.00 0.00 0.00 3.18
847 848 5.635700 GCCGATGATTCCTAGTATGAAGAAC 59.364 44.000 0.00 0.00 0.00 3.01
849 850 4.832823 TGCCGATGATTCCTAGTATGAAGA 59.167 41.667 0.00 0.00 0.00 2.87
850 851 5.139435 TGCCGATGATTCCTAGTATGAAG 57.861 43.478 0.00 0.00 0.00 3.02
853 854 4.186926 CCATGCCGATGATTCCTAGTATG 58.813 47.826 0.00 0.00 0.00 2.39
854 855 3.840666 ACCATGCCGATGATTCCTAGTAT 59.159 43.478 0.00 0.00 0.00 2.12
855 856 3.006859 CACCATGCCGATGATTCCTAGTA 59.993 47.826 0.00 0.00 0.00 1.82
856 857 2.050144 ACCATGCCGATGATTCCTAGT 58.950 47.619 0.00 0.00 0.00 2.57
857 858 2.420642 CACCATGCCGATGATTCCTAG 58.579 52.381 0.00 0.00 0.00 3.02
858 859 1.072173 CCACCATGCCGATGATTCCTA 59.928 52.381 0.00 0.00 0.00 2.94
860 861 1.799258 GCCACCATGCCGATGATTCC 61.799 60.000 0.00 0.00 0.00 3.01
861 862 1.102809 TGCCACCATGCCGATGATTC 61.103 55.000 0.00 0.00 0.00 2.52
862 863 0.468585 ATGCCACCATGCCGATGATT 60.469 50.000 0.00 0.00 0.00 2.57
863 864 0.468585 AATGCCACCATGCCGATGAT 60.469 50.000 0.00 0.00 0.00 2.45
870 905 2.674357 GACATTCAAAATGCCACCATGC 59.326 45.455 0.00 0.00 0.00 4.06
876 911 5.408880 ACATCATGACATTCAAAATGCCA 57.591 34.783 0.00 0.00 30.24 4.92
901 936 1.761784 CAGAGGTCAGATCCTGAAGGG 59.238 57.143 0.00 0.00 42.46 3.95
902 937 1.138661 GCAGAGGTCAGATCCTGAAGG 59.861 57.143 0.00 0.00 42.46 3.46
903 938 1.202394 CGCAGAGGTCAGATCCTGAAG 60.202 57.143 0.00 0.00 42.46 3.02
924 959 0.389166 CAACGTCCTCACTCTCTGGC 60.389 60.000 0.00 0.00 0.00 4.85
925 960 0.962489 ACAACGTCCTCACTCTCTGG 59.038 55.000 0.00 0.00 0.00 3.86
933 986 1.613925 CTCTTCCTCACAACGTCCTCA 59.386 52.381 0.00 0.00 0.00 3.86
945 998 4.679373 TCATGTATGCTTCCTCTTCCTC 57.321 45.455 0.00 0.00 0.00 3.71
946 999 4.681781 CGTTCATGTATGCTTCCTCTTCCT 60.682 45.833 0.00 0.00 0.00 3.36
947 1000 3.557595 CGTTCATGTATGCTTCCTCTTCC 59.442 47.826 0.00 0.00 0.00 3.46
948 1001 3.557595 CCGTTCATGTATGCTTCCTCTTC 59.442 47.826 0.00 0.00 0.00 2.87
949 1002 3.197766 TCCGTTCATGTATGCTTCCTCTT 59.802 43.478 0.00 0.00 0.00 2.85
950 1003 2.766263 TCCGTTCATGTATGCTTCCTCT 59.234 45.455 0.00 0.00 0.00 3.69
962 1015 1.399440 CCTCATGCAACTCCGTTCATG 59.601 52.381 0.00 10.29 35.04 3.07
1206 1259 2.047655 TTGGTGGCGTCGATGGAC 60.048 61.111 6.79 0.00 39.89 4.02
1509 1562 1.609841 CCTACGGTTTCCTTGGTGTCC 60.610 57.143 0.00 0.00 0.00 4.02
1707 1760 4.678044 GCATTGTCCTCTGAGATGAACGTA 60.678 45.833 6.17 0.00 0.00 3.57
1821 1874 1.991121 TCGTATCATCGGGGTTAGCT 58.009 50.000 0.00 0.00 0.00 3.32
1822 1875 2.295349 TCTTCGTATCATCGGGGTTAGC 59.705 50.000 0.00 0.00 0.00 3.09
1827 1880 3.474007 CGTCTTCGTATCATCGGGG 57.526 57.895 0.00 0.00 0.00 5.73
1954 2007 2.355481 GTTTGTCGACTCCGCCGT 60.355 61.111 17.92 0.00 35.37 5.68
2074 2136 2.356313 CAGCTTCCAGACGTGCGT 60.356 61.111 0.00 0.00 0.00 5.24
3213 3371 1.005394 GTTCCGGACGCTCTTCCAA 60.005 57.895 1.83 0.00 35.04 3.53
3489 3764 1.062587 GTTCTTGTCCAATGGCGATCG 59.937 52.381 11.69 11.69 0.00 3.69
3504 3794 6.514947 TGCATGCACAAATTTCTTAGTTCTT 58.485 32.000 18.46 0.00 0.00 2.52
3506 3796 6.758149 CATGCATGCACAAATTTCTTAGTTC 58.242 36.000 25.37 0.00 0.00 3.01
3523 3817 1.599071 CTTACACCTACCGCATGCATG 59.401 52.381 22.70 22.70 0.00 4.06
3524 3818 1.475034 CCTTACACCTACCGCATGCAT 60.475 52.381 19.57 7.65 0.00 3.96
3525 3819 0.107897 CCTTACACCTACCGCATGCA 60.108 55.000 19.57 0.00 0.00 3.96
3526 3820 0.107848 ACCTTACACCTACCGCATGC 60.108 55.000 7.91 7.91 0.00 4.06
3527 3821 2.396590 AACCTTACACCTACCGCATG 57.603 50.000 0.00 0.00 0.00 4.06
3528 3822 3.078837 CAAAACCTTACACCTACCGCAT 58.921 45.455 0.00 0.00 0.00 4.73
3531 3825 1.808343 GGCAAAACCTTACACCTACCG 59.192 52.381 0.00 0.00 34.51 4.02
3546 3840 4.196778 TCCACCAGCACCGGCAAA 62.197 61.111 0.00 0.00 44.61 3.68
3806 4100 0.645868 GACCAATTACTCGCGAGTGC 59.354 55.000 43.41 22.68 42.52 4.40
3908 4202 2.835764 AGAACTAATTAGACACCGGCCA 59.164 45.455 19.38 0.00 0.00 5.36
4000 4294 0.167908 ACATACAAACATGCCGCACG 59.832 50.000 0.00 0.00 0.00 5.34
4004 4298 5.049474 AGCATACATACATACAAACATGCCG 60.049 40.000 0.00 0.00 38.59 5.69
4064 4358 8.325046 GGGGATCAATCTCTTAGCTATGTATTT 58.675 37.037 6.53 0.00 0.00 1.40
4107 4401 3.713003 TCATAGGAGAGCAGAGAAACCA 58.287 45.455 0.00 0.00 0.00 3.67
4172 4466 1.157870 ACCGAAAGTGGAAGTGCACG 61.158 55.000 12.01 0.00 0.00 5.34
4229 4523 8.196378 AGACTTGGTTAAATCTCAGTAGACTT 57.804 34.615 0.00 0.00 33.57 3.01
4257 4551 3.181497 ACATAAAATGCTGCATGGTCGAC 60.181 43.478 17.00 7.13 0.00 4.20
4260 4554 4.374843 TGACATAAAATGCTGCATGGTC 57.625 40.909 17.00 17.17 0.00 4.02
4319 4614 4.202010 ACAACATGCTACAACCAACAAGAC 60.202 41.667 0.00 0.00 0.00 3.01
4325 4620 2.158534 AGGGACAACATGCTACAACCAA 60.159 45.455 0.00 0.00 0.00 3.67
4340 4635 4.991776 TGAAATACAACCAATGAGGGACA 58.008 39.130 0.00 0.00 43.89 4.02
4341 4636 5.418840 ACATGAAATACAACCAATGAGGGAC 59.581 40.000 0.00 0.00 43.89 4.46
4358 4653 1.337703 GTTGCAGCTGGTGACATGAAA 59.662 47.619 17.12 0.00 41.51 2.69
4359 4654 0.953727 GTTGCAGCTGGTGACATGAA 59.046 50.000 17.12 0.00 41.51 2.57
4360 4655 0.179023 TGTTGCAGCTGGTGACATGA 60.179 50.000 17.12 0.00 41.51 3.07
4362 4657 1.171308 GATGTTGCAGCTGGTGACAT 58.829 50.000 17.12 12.00 41.51 3.06
4364 4659 1.242076 AAGATGTTGCAGCTGGTGAC 58.758 50.000 17.12 1.27 27.64 3.67
4365 4660 1.881973 GAAAGATGTTGCAGCTGGTGA 59.118 47.619 17.12 0.00 27.64 4.02
4366 4661 1.610038 TGAAAGATGTTGCAGCTGGTG 59.390 47.619 17.12 1.76 27.64 4.17
4367 4662 1.985473 TGAAAGATGTTGCAGCTGGT 58.015 45.000 17.12 0.00 27.64 4.00
4368 4663 3.057104 TCAATGAAAGATGTTGCAGCTGG 60.057 43.478 17.12 0.00 27.64 4.85
4371 4666 2.912967 CGTCAATGAAAGATGTTGCAGC 59.087 45.455 0.00 0.00 0.00 5.25
4401 4699 4.508861 TGCTACAACCGTTCTAACTGAAAC 59.491 41.667 0.00 0.00 36.30 2.78
4448 4746 0.158511 CGGCGAAAAATGTTGCAACG 59.841 50.000 23.79 11.66 0.00 4.10
4528 4827 4.315803 ACTGTGATTTAACGAAGTCCCAG 58.684 43.478 0.00 0.00 45.00 4.45
4531 4830 4.089636 GTCGACTGTGATTTAACGAAGTCC 59.910 45.833 8.70 0.00 45.00 3.85
4546 4845 3.499157 GTGTCTAGAACTCAGTCGACTGT 59.501 47.826 37.21 23.45 44.12 3.55
4578 4877 5.504173 GCGGGATGATAAACTAAGAGTTTGC 60.504 44.000 13.55 7.17 46.83 3.68
4579 4878 5.007724 GGCGGGATGATAAACTAAGAGTTTG 59.992 44.000 13.55 0.00 46.83 2.93
4587 4886 0.034337 GCGGGCGGGATGATAAACTA 59.966 55.000 0.00 0.00 0.00 2.24
4588 4887 1.227853 GCGGGCGGGATGATAAACT 60.228 57.895 0.00 0.00 0.00 2.66
4599 4898 4.137872 TTCGGAGTAAGCGGGCGG 62.138 66.667 0.00 0.00 0.00 6.13
4600 4899 2.884207 GTTCGGAGTAAGCGGGCG 60.884 66.667 0.00 0.00 0.00 6.13
4643 5108 0.545646 TCATGATCGGTGGCATGGAA 59.454 50.000 0.00 0.00 41.60 3.53
4660 5125 7.485810 CACTAGATGCATGGAAATGAAAATCA 58.514 34.615 2.46 0.00 0.00 2.57
4685 5150 8.372521 CCGTTCTGAAATTATGTAAACATTTGC 58.627 33.333 0.12 0.00 37.76 3.68
4686 5151 8.859156 CCCGTTCTGAAATTATGTAAACATTTG 58.141 33.333 0.12 0.00 37.76 2.32
4705 5170 4.215613 GCAAACTCATAAAAGACCCGTTCT 59.784 41.667 0.00 0.00 35.32 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.