Multiple sequence alignment - TraesCS4D01G094400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G094400 chr4D 100.000 4294 0 0 1 4294 69681284 69676991 0.000000e+00 7930.0
1 TraesCS4D01G094400 chr4A 91.754 2971 100 49 471 3354 521920605 521917693 0.000000e+00 3995.0
2 TraesCS4D01G094400 chr4A 88.506 435 28 10 3364 3776 521917629 521917195 1.380000e-139 507.0
3 TraesCS4D01G094400 chr4A 88.740 373 25 8 3769 4132 521915569 521915205 1.420000e-119 440.0
4 TraesCS4D01G094400 chr4A 93.548 155 7 3 4142 4294 521912847 521912694 1.200000e-55 228.0
5 TraesCS4D01G094400 chr4B 91.878 1699 67 27 1605 3278 103055895 103054243 0.000000e+00 2307.0
6 TraesCS4D01G094400 chr4B 91.458 679 33 11 285 952 103057561 103056897 0.000000e+00 909.0
7 TraesCS4D01G094400 chr4B 94.805 539 16 3 1073 1604 103056460 103055927 0.000000e+00 830.0
8 TraesCS4D01G094400 chr4B 89.237 511 38 11 3788 4294 103051022 103050525 1.310000e-174 623.0
9 TraesCS4D01G094400 chr4B 92.208 231 14 2 3501 3727 103051241 103051011 1.490000e-84 324.0
10 TraesCS4D01G094400 chr4B 92.670 191 12 1 3166 3356 103054235 103054047 1.520000e-69 274.0
11 TraesCS4D01G094400 chr2B 94.026 1155 26 12 2204 3356 214818215 214819328 0.000000e+00 1711.0
12 TraesCS4D01G094400 chr2B 87.838 74 6 3 1159 1231 799029270 799029341 2.750000e-12 84.2
13 TraesCS4D01G094400 chr2B 92.453 53 4 0 1159 1211 799107558 799107506 4.600000e-10 76.8
14 TraesCS4D01G094400 chr1D 91.915 235 17 2 1327 1560 359665806 359665573 1.150000e-85 327.0
15 TraesCS4D01G094400 chr1A 91.489 235 18 2 1327 1560 459188125 459187892 5.360000e-84 322.0
16 TraesCS4D01G094400 chr1B 91.064 235 19 2 1327 1560 481542083 481541850 2.490000e-82 316.0
17 TraesCS4D01G094400 chr1B 86.885 61 2 3 3732 3786 366270135 366270195 3.580000e-06 63.9
18 TraesCS4D01G094400 chr3D 90.213 235 21 2 1327 1560 515776705 515776938 5.390000e-79 305.0
19 TraesCS4D01G094400 chr3D 84.034 238 26 6 1329 1554 445037938 445037701 7.230000e-53 219.0
20 TraesCS4D01G094400 chr3B 90.213 235 21 2 1327 1560 678548566 678548799 5.390000e-79 305.0
21 TraesCS4D01G094400 chr3A 90.213 235 21 2 1327 1560 650056443 650056676 5.390000e-79 305.0
22 TraesCS4D01G094400 chr3A 76.923 104 17 7 167 269 655078543 655078640 8.000000e-03 52.8
23 TraesCS4D01G094400 chr2D 79.675 246 36 10 1328 1560 175331639 175331883 9.550000e-37 165.0
24 TraesCS4D01G094400 chr7D 97.500 40 1 0 1157 1196 412761583 412761622 7.700000e-08 69.4
25 TraesCS4D01G094400 chr7B 97.500 40 1 0 1157 1196 426972987 426973026 7.700000e-08 69.4
26 TraesCS4D01G094400 chr7B 80.822 73 14 0 26 98 623519688 623519616 1.670000e-04 58.4
27 TraesCS4D01G094400 chr7B 80.822 73 14 0 26 98 623534355 623534283 1.670000e-04 58.4
28 TraesCS4D01G094400 chr7A 97.500 40 1 0 1157 1196 473921377 473921416 7.700000e-08 69.4
29 TraesCS4D01G094400 chr6B 100.000 29 0 0 240 268 135359586 135359614 2.000000e-03 54.7
30 TraesCS4D01G094400 chr2A 100.000 28 0 0 242 269 36881314 36881341 8.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G094400 chr4D 69676991 69681284 4293 True 7930.000000 7930 100.000000 1 4294 1 chr4D.!!$R1 4293
1 TraesCS4D01G094400 chr4A 521912694 521920605 7911 True 1292.500000 3995 90.637000 471 4294 4 chr4A.!!$R1 3823
2 TraesCS4D01G094400 chr4B 103050525 103057561 7036 True 877.833333 2307 92.042667 285 4294 6 chr4B.!!$R1 4009
3 TraesCS4D01G094400 chr2B 214818215 214819328 1113 False 1711.000000 1711 94.026000 2204 3356 1 chr2B.!!$F1 1152

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
35 36 0.035152 TCTACTCTTCGCCACCGGTA 60.035 55.000 6.87 0.00 34.56 4.02 F
108 109 0.035915 GGAGGAGAGAGTTTGGTGGC 60.036 60.000 0.00 0.00 0.00 5.01 F
128 129 0.105964 AGGGCAGAGGCGAATCTCTA 60.106 55.000 3.64 0.00 41.76 2.43 F
607 616 0.178958 AGAGACGGACCAAGTGGACT 60.179 55.000 3.83 0.00 38.94 3.85 F
1287 1651 1.373748 TACAAGTTCGAGCCGTGGC 60.374 57.895 1.67 1.67 42.33 5.01 F
3164 3591 0.394938 TGGCTGACGCTTTTAGGTCA 59.605 50.000 0.00 0.00 40.63 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1070 1121 0.460311 CGCTCGGGAGATTGGTTAGT 59.540 55.000 0.00 0.00 38.80 2.24 R
2031 2448 1.352017 TCCAGCTGCAAAGATCAGGAA 59.648 47.619 8.66 0.00 32.41 3.36 R
2614 3031 0.252974 TAGTGGGGGCTGCTAAGGAA 60.253 55.000 0.00 0.00 0.00 3.36 R
2682 3101 0.660300 GGTTTCGGAAGCTTTGCACG 60.660 55.000 0.00 3.93 0.00 5.34 R
3228 3772 0.613777 GATTTCCAGGTCACCCGAGT 59.386 55.000 0.00 0.00 35.12 4.18 R
4065 8927 3.136443 CCCTCCATTACAACCTATCTGCA 59.864 47.826 0.00 0.00 0.00 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.877691 GCACAGGCACCGGAATTC 59.122 61.111 9.46 0.00 40.72 2.17
18 19 1.675641 GCACAGGCACCGGAATTCT 60.676 57.895 9.46 0.00 40.72 2.40
19 20 0.392461 GCACAGGCACCGGAATTCTA 60.392 55.000 9.46 0.00 40.72 2.10
20 21 1.369625 CACAGGCACCGGAATTCTAC 58.630 55.000 9.46 0.00 0.00 2.59
21 22 1.066143 CACAGGCACCGGAATTCTACT 60.066 52.381 9.46 0.00 0.00 2.57
22 23 1.207329 ACAGGCACCGGAATTCTACTC 59.793 52.381 9.46 0.00 0.00 2.59
23 24 1.482593 CAGGCACCGGAATTCTACTCT 59.517 52.381 9.46 0.00 0.00 3.24
24 25 2.093447 CAGGCACCGGAATTCTACTCTT 60.093 50.000 9.46 0.00 0.00 2.85
25 26 2.168728 AGGCACCGGAATTCTACTCTTC 59.831 50.000 9.46 0.00 0.00 2.87
26 27 2.194271 GCACCGGAATTCTACTCTTCG 58.806 52.381 9.46 0.00 0.00 3.79
27 28 2.194271 CACCGGAATTCTACTCTTCGC 58.806 52.381 9.46 0.00 0.00 4.70
28 29 1.136500 ACCGGAATTCTACTCTTCGCC 59.864 52.381 9.46 0.00 0.00 5.54
29 30 1.136305 CCGGAATTCTACTCTTCGCCA 59.864 52.381 5.23 0.00 0.00 5.69
30 31 2.194271 CGGAATTCTACTCTTCGCCAC 58.806 52.381 5.23 0.00 0.00 5.01
31 32 2.552031 GGAATTCTACTCTTCGCCACC 58.448 52.381 5.23 0.00 0.00 4.61
32 33 2.194271 GAATTCTACTCTTCGCCACCG 58.806 52.381 0.00 0.00 0.00 4.94
33 34 0.460311 ATTCTACTCTTCGCCACCGG 59.540 55.000 0.00 0.00 34.56 5.28
34 35 0.896940 TTCTACTCTTCGCCACCGGT 60.897 55.000 0.00 0.00 34.56 5.28
35 36 0.035152 TCTACTCTTCGCCACCGGTA 60.035 55.000 6.87 0.00 34.56 4.02
36 37 0.381089 CTACTCTTCGCCACCGGTAG 59.619 60.000 6.87 0.00 34.56 3.18
37 38 1.660560 TACTCTTCGCCACCGGTAGC 61.661 60.000 15.65 15.65 34.56 3.58
38 39 3.718210 CTCTTCGCCACCGGTAGCC 62.718 68.421 19.63 3.85 34.56 3.93
39 40 4.077184 CTTCGCCACCGGTAGCCA 62.077 66.667 19.63 3.28 34.56 4.75
40 41 4.077184 TTCGCCACCGGTAGCCAG 62.077 66.667 19.63 6.49 34.56 4.85
42 43 4.514577 CGCCACCGGTAGCCAGAG 62.515 72.222 19.63 1.04 0.00 3.35
43 44 4.840005 GCCACCGGTAGCCAGAGC 62.840 72.222 14.68 1.65 40.32 4.09
44 45 4.514577 CCACCGGTAGCCAGAGCG 62.515 72.222 6.87 0.00 46.67 5.03
65 66 4.496336 GGCAGGGCAGAGGCGAAT 62.496 66.667 0.00 0.00 42.47 3.34
66 67 2.899339 GCAGGGCAGAGGCGAATC 60.899 66.667 0.00 0.00 42.47 2.52
67 68 2.203126 CAGGGCAGAGGCGAATCC 60.203 66.667 0.00 0.00 42.47 3.01
68 69 2.688666 AGGGCAGAGGCGAATCCA 60.689 61.111 0.00 0.00 42.47 3.41
69 70 2.514824 GGGCAGAGGCGAATCCAC 60.515 66.667 0.00 0.00 42.47 4.02
70 71 2.892425 GGCAGAGGCGAATCCACG 60.892 66.667 0.00 0.00 42.47 4.94
71 72 2.892425 GCAGAGGCGAATCCACGG 60.892 66.667 0.00 0.00 37.29 4.94
72 73 2.202932 CAGAGGCGAATCCACGGG 60.203 66.667 0.00 0.00 37.29 5.28
73 74 4.162690 AGAGGCGAATCCACGGGC 62.163 66.667 0.00 0.00 37.29 6.13
74 75 4.162690 GAGGCGAATCCACGGGCT 62.163 66.667 0.00 0.00 39.50 5.19
75 76 4.162690 AGGCGAATCCACGGGCTC 62.163 66.667 0.00 0.00 37.29 4.70
76 77 4.467084 GGCGAATCCACGGGCTCA 62.467 66.667 0.00 0.00 34.01 4.26
77 78 2.203070 GCGAATCCACGGGCTCAT 60.203 61.111 0.00 0.00 0.00 2.90
78 79 2.247437 GCGAATCCACGGGCTCATC 61.247 63.158 0.00 0.00 0.00 2.92
79 80 1.951130 CGAATCCACGGGCTCATCG 60.951 63.158 0.00 0.00 0.00 3.84
80 81 1.595382 GAATCCACGGGCTCATCGG 60.595 63.158 0.00 0.00 0.00 4.18
81 82 2.311688 GAATCCACGGGCTCATCGGT 62.312 60.000 0.00 0.00 0.00 4.69
82 83 2.593468 AATCCACGGGCTCATCGGTG 62.593 60.000 0.00 0.00 37.60 4.94
83 84 3.770040 CCACGGGCTCATCGGTGA 61.770 66.667 0.00 0.00 39.39 4.02
84 85 2.264480 CACGGGCTCATCGGTGAA 59.736 61.111 0.00 0.00 39.39 3.18
85 86 1.811266 CACGGGCTCATCGGTGAAG 60.811 63.158 0.00 0.00 39.39 3.02
86 87 2.892425 CGGGCTCATCGGTGAAGC 60.892 66.667 0.00 5.70 33.05 3.86
87 88 2.586792 GGGCTCATCGGTGAAGCT 59.413 61.111 16.23 0.00 33.05 3.74
88 89 1.078143 GGGCTCATCGGTGAAGCTT 60.078 57.895 16.23 0.00 33.05 3.74
89 90 1.372087 GGGCTCATCGGTGAAGCTTG 61.372 60.000 2.10 0.00 33.05 4.01
90 91 1.372087 GGCTCATCGGTGAAGCTTGG 61.372 60.000 2.10 0.00 33.05 3.61
91 92 0.391661 GCTCATCGGTGAAGCTTGGA 60.392 55.000 2.10 0.00 33.05 3.53
92 93 1.649664 CTCATCGGTGAAGCTTGGAG 58.350 55.000 2.10 0.00 33.05 3.86
93 94 0.250234 TCATCGGTGAAGCTTGGAGG 59.750 55.000 2.10 0.00 0.00 4.30
94 95 0.250234 CATCGGTGAAGCTTGGAGGA 59.750 55.000 2.10 0.00 0.00 3.71
95 96 0.539051 ATCGGTGAAGCTTGGAGGAG 59.461 55.000 2.10 0.00 0.00 3.69
96 97 0.541998 TCGGTGAAGCTTGGAGGAGA 60.542 55.000 2.10 0.00 0.00 3.71
97 98 0.108424 CGGTGAAGCTTGGAGGAGAG 60.108 60.000 2.10 0.00 0.00 3.20
98 99 1.270907 GGTGAAGCTTGGAGGAGAGA 58.729 55.000 2.10 0.00 0.00 3.10
99 100 1.206849 GGTGAAGCTTGGAGGAGAGAG 59.793 57.143 2.10 0.00 0.00 3.20
100 101 1.899142 GTGAAGCTTGGAGGAGAGAGT 59.101 52.381 2.10 0.00 0.00 3.24
101 102 2.301583 GTGAAGCTTGGAGGAGAGAGTT 59.698 50.000 2.10 0.00 0.00 3.01
102 103 2.975489 TGAAGCTTGGAGGAGAGAGTTT 59.025 45.455 2.10 0.00 0.00 2.66
103 104 3.244353 TGAAGCTTGGAGGAGAGAGTTTG 60.244 47.826 2.10 0.00 0.00 2.93
104 105 1.627834 AGCTTGGAGGAGAGAGTTTGG 59.372 52.381 0.00 0.00 0.00 3.28
105 106 1.349357 GCTTGGAGGAGAGAGTTTGGT 59.651 52.381 0.00 0.00 0.00 3.67
106 107 2.873649 GCTTGGAGGAGAGAGTTTGGTG 60.874 54.545 0.00 0.00 0.00 4.17
107 108 1.352083 TGGAGGAGAGAGTTTGGTGG 58.648 55.000 0.00 0.00 0.00 4.61
108 109 0.035915 GGAGGAGAGAGTTTGGTGGC 60.036 60.000 0.00 0.00 0.00 5.01
109 110 0.687354 GAGGAGAGAGTTTGGTGGCA 59.313 55.000 0.00 0.00 0.00 4.92
110 111 0.689623 AGGAGAGAGTTTGGTGGCAG 59.310 55.000 0.00 0.00 0.00 4.85
111 112 0.322008 GGAGAGAGTTTGGTGGCAGG 60.322 60.000 0.00 0.00 0.00 4.85
112 113 0.322008 GAGAGAGTTTGGTGGCAGGG 60.322 60.000 0.00 0.00 0.00 4.45
113 114 1.973812 GAGAGTTTGGTGGCAGGGC 60.974 63.158 0.00 0.00 0.00 5.19
114 115 2.203480 GAGTTTGGTGGCAGGGCA 60.203 61.111 0.00 0.00 0.00 5.36
115 116 2.203538 AGTTTGGTGGCAGGGCAG 60.204 61.111 0.00 0.00 0.00 4.85
116 117 2.203480 GTTTGGTGGCAGGGCAGA 60.203 61.111 0.00 0.00 0.00 4.26
117 118 2.115910 TTTGGTGGCAGGGCAGAG 59.884 61.111 0.00 0.00 0.00 3.35
118 119 3.512154 TTTGGTGGCAGGGCAGAGG 62.512 63.158 0.00 0.00 0.00 3.69
123 124 4.496336 GGCAGGGCAGAGGCGAAT 62.496 66.667 0.00 0.00 42.47 3.34
124 125 2.899339 GCAGGGCAGAGGCGAATC 60.899 66.667 0.00 0.00 42.47 2.52
125 126 2.906458 CAGGGCAGAGGCGAATCT 59.094 61.111 0.00 0.00 42.47 2.40
126 127 1.227497 CAGGGCAGAGGCGAATCTC 60.227 63.158 0.00 0.00 42.47 2.75
127 128 1.382420 AGGGCAGAGGCGAATCTCT 60.382 57.895 0.00 0.00 44.25 3.10
128 129 0.105964 AGGGCAGAGGCGAATCTCTA 60.106 55.000 3.64 0.00 41.76 2.43
129 130 0.972883 GGGCAGAGGCGAATCTCTAT 59.027 55.000 3.64 0.00 41.76 1.98
130 131 1.337635 GGGCAGAGGCGAATCTCTATG 60.338 57.143 3.64 0.00 41.76 2.23
131 132 1.342819 GGCAGAGGCGAATCTCTATGT 59.657 52.381 3.64 0.00 41.76 2.29
132 133 2.609244 GGCAGAGGCGAATCTCTATGTC 60.609 54.545 3.64 0.00 41.76 3.06
133 134 2.035193 GCAGAGGCGAATCTCTATGTCA 59.965 50.000 3.64 0.00 41.76 3.58
134 135 3.491619 GCAGAGGCGAATCTCTATGTCAA 60.492 47.826 3.64 0.00 41.76 3.18
135 136 4.798924 GCAGAGGCGAATCTCTATGTCAAT 60.799 45.833 3.64 0.00 41.76 2.57
136 137 4.685165 CAGAGGCGAATCTCTATGTCAATG 59.315 45.833 3.64 0.00 41.76 2.82
137 138 3.397482 AGGCGAATCTCTATGTCAATGC 58.603 45.455 0.00 0.00 0.00 3.56
138 139 3.133691 GGCGAATCTCTATGTCAATGCA 58.866 45.455 0.00 0.00 0.00 3.96
139 140 3.561310 GGCGAATCTCTATGTCAATGCAA 59.439 43.478 0.00 0.00 0.00 4.08
140 141 4.319333 GGCGAATCTCTATGTCAATGCAAG 60.319 45.833 0.00 0.00 0.00 4.01
141 142 4.272018 GCGAATCTCTATGTCAATGCAAGT 59.728 41.667 0.00 0.00 0.00 3.16
142 143 5.220739 GCGAATCTCTATGTCAATGCAAGTT 60.221 40.000 0.00 0.00 0.00 2.66
143 144 6.417327 CGAATCTCTATGTCAATGCAAGTTC 58.583 40.000 0.00 0.00 0.00 3.01
144 145 6.257411 CGAATCTCTATGTCAATGCAAGTTCT 59.743 38.462 0.00 0.00 0.00 3.01
145 146 7.201591 CGAATCTCTATGTCAATGCAAGTTCTT 60.202 37.037 0.00 0.00 0.00 2.52
146 147 7.934855 ATCTCTATGTCAATGCAAGTTCTTT 57.065 32.000 0.00 0.00 0.00 2.52
147 148 7.750229 TCTCTATGTCAATGCAAGTTCTTTT 57.250 32.000 0.00 0.00 0.00 2.27
148 149 8.169977 TCTCTATGTCAATGCAAGTTCTTTTT 57.830 30.769 0.00 0.00 0.00 1.94
149 150 9.283768 TCTCTATGTCAATGCAAGTTCTTTTTA 57.716 29.630 0.00 0.00 0.00 1.52
150 151 9.897744 CTCTATGTCAATGCAAGTTCTTTTTAA 57.102 29.630 0.00 0.00 0.00 1.52
151 152 9.897744 TCTATGTCAATGCAAGTTCTTTTTAAG 57.102 29.630 0.00 0.00 0.00 1.85
152 153 9.683069 CTATGTCAATGCAAGTTCTTTTTAAGT 57.317 29.630 0.00 0.00 0.00 2.24
214 215 9.495572 AACTTGGTTGATGTTTAAAAAGTTTGA 57.504 25.926 5.11 0.00 33.97 2.69
215 216 8.931775 ACTTGGTTGATGTTTAAAAAGTTTGAC 58.068 29.630 0.00 0.00 0.00 3.18
216 217 9.150348 CTTGGTTGATGTTTAAAAAGTTTGACT 57.850 29.630 0.00 0.00 0.00 3.41
217 218 8.696410 TGGTTGATGTTTAAAAAGTTTGACTC 57.304 30.769 0.00 0.00 0.00 3.36
218 219 7.486551 TGGTTGATGTTTAAAAAGTTTGACTCG 59.513 33.333 0.00 0.00 0.00 4.18
219 220 7.698970 GGTTGATGTTTAAAAAGTTTGACTCGA 59.301 33.333 0.00 0.00 0.00 4.04
220 221 8.734030 GTTGATGTTTAAAAAGTTTGACTCGAG 58.266 33.333 11.84 11.84 0.00 4.04
221 222 8.203937 TGATGTTTAAAAAGTTTGACTCGAGA 57.796 30.769 21.68 0.00 0.00 4.04
222 223 8.120465 TGATGTTTAAAAAGTTTGACTCGAGAC 58.880 33.333 21.68 14.43 0.00 3.36
223 224 6.471839 TGTTTAAAAAGTTTGACTCGAGACG 58.528 36.000 21.68 0.00 0.00 4.18
224 225 6.310956 TGTTTAAAAAGTTTGACTCGAGACGA 59.689 34.615 21.68 10.50 0.00 4.20
225 226 6.890663 TTAAAAAGTTTGACTCGAGACGAA 57.109 33.333 21.68 16.55 34.74 3.85
226 227 5.391060 AAAAAGTTTGACTCGAGACGAAG 57.609 39.130 21.68 0.00 34.74 3.79
227 228 2.053282 AGTTTGACTCGAGACGAAGC 57.947 50.000 21.68 13.02 34.74 3.86
228 229 1.609555 AGTTTGACTCGAGACGAAGCT 59.390 47.619 21.68 14.86 34.74 3.74
229 230 2.812591 AGTTTGACTCGAGACGAAGCTA 59.187 45.455 21.68 0.00 34.74 3.32
230 231 3.252701 AGTTTGACTCGAGACGAAGCTAA 59.747 43.478 21.68 0.00 34.74 3.09
231 232 4.082679 AGTTTGACTCGAGACGAAGCTAAT 60.083 41.667 21.68 0.00 34.74 1.73
232 233 5.123502 AGTTTGACTCGAGACGAAGCTAATA 59.876 40.000 21.68 0.00 34.74 0.98
233 234 5.752892 TTGACTCGAGACGAAGCTAATAT 57.247 39.130 21.68 0.00 34.74 1.28
234 235 6.856135 TTGACTCGAGACGAAGCTAATATA 57.144 37.500 21.68 0.00 34.74 0.86
235 236 7.436430 TTGACTCGAGACGAAGCTAATATAT 57.564 36.000 21.68 0.00 34.74 0.86
236 237 6.832804 TGACTCGAGACGAAGCTAATATATG 58.167 40.000 21.68 0.00 34.74 1.78
237 238 6.649557 TGACTCGAGACGAAGCTAATATATGA 59.350 38.462 21.68 0.00 34.74 2.15
238 239 7.172703 TGACTCGAGACGAAGCTAATATATGAA 59.827 37.037 21.68 0.00 34.74 2.57
239 240 7.523219 ACTCGAGACGAAGCTAATATATGAAG 58.477 38.462 21.68 0.00 34.74 3.02
240 241 7.173562 ACTCGAGACGAAGCTAATATATGAAGT 59.826 37.037 21.68 0.00 34.74 3.01
241 242 8.543862 TCGAGACGAAGCTAATATATGAAGTA 57.456 34.615 0.00 0.00 31.06 2.24
242 243 8.657729 TCGAGACGAAGCTAATATATGAAGTAG 58.342 37.037 0.00 0.00 31.06 2.57
243 244 8.657729 CGAGACGAAGCTAATATATGAAGTAGA 58.342 37.037 0.00 0.00 0.00 2.59
244 245 9.982291 GAGACGAAGCTAATATATGAAGTAGAG 57.018 37.037 0.00 0.00 0.00 2.43
245 246 9.509956 AGACGAAGCTAATATATGAAGTAGAGT 57.490 33.333 0.00 0.00 0.00 3.24
261 262 9.211485 TGAAGTAGAGTAAATAAAAACGGAAGG 57.789 33.333 0.00 0.00 0.00 3.46
262 263 9.428097 GAAGTAGAGTAAATAAAAACGGAAGGA 57.572 33.333 0.00 0.00 0.00 3.36
263 264 8.999220 AGTAGAGTAAATAAAAACGGAAGGAG 57.001 34.615 0.00 0.00 0.00 3.69
264 265 8.591940 AGTAGAGTAAATAAAAACGGAAGGAGT 58.408 33.333 0.00 0.00 0.00 3.85
265 266 9.860898 GTAGAGTAAATAAAAACGGAAGGAGTA 57.139 33.333 0.00 0.00 0.00 2.59
266 267 8.768957 AGAGTAAATAAAAACGGAAGGAGTAC 57.231 34.615 0.00 0.00 0.00 2.73
267 268 8.370182 AGAGTAAATAAAAACGGAAGGAGTACA 58.630 33.333 0.00 0.00 0.00 2.90
268 269 8.907222 AGTAAATAAAAACGGAAGGAGTACAA 57.093 30.769 0.00 0.00 0.00 2.41
269 270 9.511272 AGTAAATAAAAACGGAAGGAGTACAAT 57.489 29.630 0.00 0.00 0.00 2.71
270 271 9.550811 GTAAATAAAAACGGAAGGAGTACAATG 57.449 33.333 0.00 0.00 0.00 2.82
271 272 7.754851 AATAAAAACGGAAGGAGTACAATGT 57.245 32.000 0.00 0.00 0.00 2.71
272 273 7.754851 ATAAAAACGGAAGGAGTACAATGTT 57.245 32.000 0.00 0.00 0.00 2.71
273 274 8.851541 ATAAAAACGGAAGGAGTACAATGTTA 57.148 30.769 0.00 0.00 0.00 2.41
274 275 7.571080 AAAAACGGAAGGAGTACAATGTTAA 57.429 32.000 0.00 0.00 0.00 2.01
275 276 7.571080 AAAACGGAAGGAGTACAATGTTAAA 57.429 32.000 0.00 0.00 0.00 1.52
276 277 7.754851 AAACGGAAGGAGTACAATGTTAAAT 57.245 32.000 0.00 0.00 0.00 1.40
277 278 7.754851 AACGGAAGGAGTACAATGTTAAATT 57.245 32.000 0.00 0.00 0.00 1.82
278 279 7.754851 ACGGAAGGAGTACAATGTTAAATTT 57.245 32.000 0.00 0.00 0.00 1.82
279 280 8.173542 ACGGAAGGAGTACAATGTTAAATTTT 57.826 30.769 0.00 0.00 0.00 1.82
280 281 8.635328 ACGGAAGGAGTACAATGTTAAATTTTT 58.365 29.630 0.00 0.00 0.00 1.94
301 302 4.713824 TTATATCTTATCGCCGAGGGTG 57.286 45.455 0.00 0.00 33.99 4.61
336 337 9.859427 TTCAAAAGATTAGATTTACCATTGCAG 57.141 29.630 0.00 0.00 0.00 4.41
337 338 9.241919 TCAAAAGATTAGATTTACCATTGCAGA 57.758 29.630 0.00 0.00 0.00 4.26
374 375 7.066307 AGATCAAACTTGCCCAAAAAGTTAT 57.934 32.000 2.26 0.00 44.93 1.89
418 419 2.291190 GCACTTAGTCGCCTAGGAGTAG 59.709 54.545 14.75 8.78 0.00 2.57
436 437 5.312120 AGTAGGTGACAGTACAGATTTCG 57.688 43.478 0.00 0.00 0.00 3.46
439 440 4.748892 AGGTGACAGTACAGATTTCGATG 58.251 43.478 0.00 0.00 0.00 3.84
440 441 3.307242 GGTGACAGTACAGATTTCGATGC 59.693 47.826 0.00 0.00 0.00 3.91
441 442 3.926527 GTGACAGTACAGATTTCGATGCA 59.073 43.478 0.00 0.00 0.00 3.96
442 443 4.388773 GTGACAGTACAGATTTCGATGCAA 59.611 41.667 0.00 0.00 0.00 4.08
443 444 4.627035 TGACAGTACAGATTTCGATGCAAG 59.373 41.667 0.00 0.00 0.00 4.01
444 445 4.569943 ACAGTACAGATTTCGATGCAAGT 58.430 39.130 0.00 0.00 0.00 3.16
445 446 4.997395 ACAGTACAGATTTCGATGCAAGTT 59.003 37.500 0.00 0.00 0.00 2.66
446 447 5.120830 ACAGTACAGATTTCGATGCAAGTTC 59.879 40.000 0.00 0.00 0.00 3.01
447 448 5.120674 CAGTACAGATTTCGATGCAAGTTCA 59.879 40.000 0.00 0.00 0.00 3.18
448 449 5.700832 AGTACAGATTTCGATGCAAGTTCAA 59.299 36.000 0.00 0.00 0.00 2.69
607 616 0.178958 AGAGACGGACCAAGTGGACT 60.179 55.000 3.83 0.00 38.94 3.85
1013 1064 3.128589 GCGAGCTTATGTTCCATTCCAAA 59.871 43.478 0.00 0.00 0.00 3.28
1065 1116 4.522971 GATCAGTCGAACCAGCCC 57.477 61.111 0.00 0.00 0.00 5.19
1068 1119 3.322466 CAGTCGAACCAGCCCCCT 61.322 66.667 0.00 0.00 0.00 4.79
1069 1120 3.003763 AGTCGAACCAGCCCCCTC 61.004 66.667 0.00 0.00 0.00 4.30
1070 1121 3.319198 GTCGAACCAGCCCCCTCA 61.319 66.667 0.00 0.00 0.00 3.86
1287 1651 1.373748 TACAAGTTCGAGCCGTGGC 60.374 57.895 1.67 1.67 42.33 5.01
1421 1785 2.203877 TACTGGAAGGCCACGGGT 60.204 61.111 5.01 0.00 39.92 5.28
1653 2048 5.581479 GTCTCGTTTAATCCCTTCCTCTTTC 59.419 44.000 0.00 0.00 0.00 2.62
1677 2072 3.802685 GCATTAGCGAGAGATTTACCGTT 59.197 43.478 0.00 0.00 0.00 4.44
1684 2079 6.103997 AGCGAGAGATTTACCGTTCATTTAA 58.896 36.000 0.00 0.00 0.00 1.52
1685 2080 6.592607 AGCGAGAGATTTACCGTTCATTTAAA 59.407 34.615 0.00 0.00 0.00 1.52
1771 2167 2.048503 AGGTTAGGTGCGTCGTGC 60.049 61.111 0.00 0.00 46.70 5.34
1797 2193 5.017294 TGCGAAAAAGAACAAGGGAAAAT 57.983 34.783 0.00 0.00 0.00 1.82
2614 3031 2.060980 GCATCCGTCAGACCCCTCT 61.061 63.158 0.00 0.00 0.00 3.69
2665 3084 2.921754 CAGGTCTCGTGTAATTCGGTTC 59.078 50.000 0.00 0.00 0.00 3.62
2666 3085 2.559668 AGGTCTCGTGTAATTCGGTTCA 59.440 45.455 0.00 0.00 0.00 3.18
2667 3086 2.921754 GGTCTCGTGTAATTCGGTTCAG 59.078 50.000 0.00 0.00 0.00 3.02
2668 3087 2.921754 GTCTCGTGTAATTCGGTTCAGG 59.078 50.000 0.00 0.00 0.00 3.86
2669 3088 2.821378 TCTCGTGTAATTCGGTTCAGGA 59.179 45.455 0.00 0.00 0.00 3.86
2670 3089 3.256383 TCTCGTGTAATTCGGTTCAGGAA 59.744 43.478 0.00 0.00 0.00 3.36
2671 3090 3.991773 CTCGTGTAATTCGGTTCAGGAAA 59.008 43.478 0.00 0.00 0.00 3.13
2672 3091 4.378774 TCGTGTAATTCGGTTCAGGAAAA 58.621 39.130 0.00 0.00 0.00 2.29
2673 3092 4.211794 TCGTGTAATTCGGTTCAGGAAAAC 59.788 41.667 0.00 0.00 0.00 2.43
2674 3093 4.212636 CGTGTAATTCGGTTCAGGAAAACT 59.787 41.667 0.00 0.00 0.00 2.66
2686 3105 2.084546 AGGAAAACTGATTAGGCGTGC 58.915 47.619 0.00 0.00 0.00 5.34
2687 3106 1.810151 GGAAAACTGATTAGGCGTGCA 59.190 47.619 0.00 0.00 0.00 4.57
2702 3121 0.668535 GTGCAAAGCTTCCGAAACCT 59.331 50.000 0.00 0.00 0.00 3.50
2716 3135 4.039245 TCCGAAACCTATGCAGATTAGAGG 59.961 45.833 0.00 0.00 32.84 3.69
2764 3183 5.244178 ACAAATCTGATACCCCTAGATCGAC 59.756 44.000 0.00 0.00 31.16 4.20
2987 3409 6.403866 TTCAACTTTTGCTGTGGTCATATT 57.596 33.333 0.00 0.00 0.00 1.28
3040 3462 5.629435 GGTCATCAAACGAGAAAATGAAACC 59.371 40.000 0.00 0.00 0.00 3.27
3163 3590 1.079503 CTGGCTGACGCTTTTAGGTC 58.920 55.000 0.00 0.00 36.09 3.85
3164 3591 0.394938 TGGCTGACGCTTTTAGGTCA 59.605 50.000 0.00 0.00 40.63 4.02
3228 3772 0.531974 GTCGCTTTCAGTGGTGGTCA 60.532 55.000 0.00 0.00 0.00 4.02
3432 4302 3.667960 GCATGCCACTTTTGAACTACTCG 60.668 47.826 6.36 0.00 0.00 4.18
3442 4312 6.761714 ACTTTTGAACTACTCGAAGTGTGATT 59.238 34.615 0.00 0.00 33.91 2.57
3456 4326 5.053978 AGTGTGATTCCTTCTCTTTTGGT 57.946 39.130 0.00 0.00 0.00 3.67
3465 4335 3.865164 CCTTCTCTTTTGGTTGTTGTTGC 59.135 43.478 0.00 0.00 0.00 4.17
3562 6777 8.889717 TGCATATACTAAGTTTTAAGCAGGTTC 58.110 33.333 0.00 0.00 0.00 3.62
3636 6852 9.834628 TTCTGAATGTTTCAAATAAATCGTACC 57.165 29.630 0.00 0.00 39.58 3.34
3656 6875 6.530534 CGTACCTGTTTCAGAAAATACGATCT 59.469 38.462 17.36 0.00 34.33 2.75
3663 6882 8.067784 TGTTTCAGAAAATACGATCTTGACAAC 58.932 33.333 0.00 0.00 0.00 3.32
3758 6978 6.750501 TCTTCAAGGTTACGTCAAGAATATCG 59.249 38.462 0.00 0.00 0.00 2.92
3767 6987 9.268255 GTTACGTCAAGAATATCGAGATCATAG 57.732 37.037 0.00 0.00 0.00 2.23
3786 8639 5.840693 TCATAGATAGAAGGTGCCAAGATGA 59.159 40.000 0.00 0.00 0.00 2.92
3827 8680 5.163301 TGGAGATCTACTATTTCCAAGCACC 60.163 44.000 6.49 0.00 35.13 5.01
3845 8698 7.818930 CCAAGCACCAAATATCTACACAAATTT 59.181 33.333 0.00 0.00 0.00 1.82
3849 8702 9.023967 GCACCAAATATCTACACAAATTTGATC 57.976 33.333 24.64 0.00 40.24 2.92
3850 8703 9.520204 CACCAAATATCTACACAAATTTGATCC 57.480 33.333 24.64 0.00 40.24 3.36
3928 8789 3.388024 TGGACAAGACCTATCATAGCACC 59.612 47.826 0.00 0.00 0.00 5.01
3969 8830 0.468214 TATCCCGCCTCCTCAGTCTG 60.468 60.000 0.00 0.00 0.00 3.51
4025 8886 3.657398 TCCTCGGTCTACCAGTATTCA 57.343 47.619 0.00 0.00 35.14 2.57
4061 8923 2.426738 CAGGTTCAAGTTTTGGACAGCA 59.573 45.455 2.92 0.00 41.10 4.41
4062 8924 2.689983 AGGTTCAAGTTTTGGACAGCAG 59.310 45.455 2.92 0.00 41.10 4.24
4063 8925 2.687935 GGTTCAAGTTTTGGACAGCAGA 59.312 45.455 2.92 0.00 41.10 4.26
4064 8926 3.489229 GGTTCAAGTTTTGGACAGCAGAC 60.489 47.826 2.92 0.00 41.10 3.51
4065 8927 3.281727 TCAAGTTTTGGACAGCAGACT 57.718 42.857 0.00 0.00 0.00 3.24
4114 8976 1.976045 CAAAGTGCGCGGTTTGTAATC 59.024 47.619 20.52 0.00 0.00 1.75
4150 11327 6.245408 TGATTAAGCACCTTGGAACTATTGT 58.755 36.000 0.00 0.00 0.00 2.71
4154 11331 3.821033 AGCACCTTGGAACTATTGTTGTC 59.179 43.478 0.00 0.00 36.39 3.18
4160 11337 5.997746 CCTTGGAACTATTGTTGTCTTCAGA 59.002 40.000 0.00 0.00 36.39 3.27
4161 11338 6.486657 CCTTGGAACTATTGTTGTCTTCAGAA 59.513 38.462 0.00 0.00 36.39 3.02
4162 11339 7.013274 CCTTGGAACTATTGTTGTCTTCAGAAA 59.987 37.037 0.00 0.00 36.39 2.52
4205 11417 7.191593 AGGTAAATTTACTCTACCAACGGAT 57.808 36.000 23.89 0.00 38.04 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.392461 TAGAATTCCGGTGCCTGTGC 60.392 55.000 0.00 0.00 38.26 4.57
1 2 1.066143 AGTAGAATTCCGGTGCCTGTG 60.066 52.381 0.00 0.00 0.00 3.66
2 3 1.207329 GAGTAGAATTCCGGTGCCTGT 59.793 52.381 0.00 0.00 0.00 4.00
3 4 1.482593 AGAGTAGAATTCCGGTGCCTG 59.517 52.381 0.00 0.00 0.00 4.85
4 5 1.867363 AGAGTAGAATTCCGGTGCCT 58.133 50.000 0.00 0.00 0.00 4.75
5 6 2.552031 GAAGAGTAGAATTCCGGTGCC 58.448 52.381 0.00 0.00 0.00 5.01
6 7 2.194271 CGAAGAGTAGAATTCCGGTGC 58.806 52.381 0.00 0.00 0.00 5.01
8 9 1.136500 GGCGAAGAGTAGAATTCCGGT 59.864 52.381 0.00 0.00 0.00 5.28
10 11 2.194271 GTGGCGAAGAGTAGAATTCCG 58.806 52.381 0.65 0.00 0.00 4.30
11 12 2.552031 GGTGGCGAAGAGTAGAATTCC 58.448 52.381 0.65 0.00 0.00 3.01
12 13 2.194271 CGGTGGCGAAGAGTAGAATTC 58.806 52.381 0.00 0.00 0.00 2.17
13 14 1.134788 CCGGTGGCGAAGAGTAGAATT 60.135 52.381 0.00 0.00 0.00 2.17
14 15 0.460311 CCGGTGGCGAAGAGTAGAAT 59.540 55.000 0.00 0.00 0.00 2.40
15 16 0.896940 ACCGGTGGCGAAGAGTAGAA 60.897 55.000 6.12 0.00 0.00 2.10
16 17 0.035152 TACCGGTGGCGAAGAGTAGA 60.035 55.000 19.93 0.00 0.00 2.59
17 18 0.381089 CTACCGGTGGCGAAGAGTAG 59.619 60.000 19.93 0.00 0.00 2.57
18 19 1.660560 GCTACCGGTGGCGAAGAGTA 61.661 60.000 27.92 0.00 0.00 2.59
19 20 3.003113 GCTACCGGTGGCGAAGAGT 62.003 63.158 27.92 0.00 0.00 3.24
20 21 2.202756 GCTACCGGTGGCGAAGAG 60.203 66.667 27.92 10.71 0.00 2.85
21 22 3.766691 GGCTACCGGTGGCGAAGA 61.767 66.667 33.00 3.60 38.00 2.87
22 23 4.077184 TGGCTACCGGTGGCGAAG 62.077 66.667 33.00 16.45 38.00 3.79
23 24 4.077184 CTGGCTACCGGTGGCGAA 62.077 66.667 33.00 23.49 38.00 4.70
25 26 4.514577 CTCTGGCTACCGGTGGCG 62.515 72.222 33.00 21.96 38.00 5.69
26 27 4.840005 GCTCTGGCTACCGGTGGC 62.840 72.222 32.87 32.87 36.25 5.01
27 28 4.514577 CGCTCTGGCTACCGGTGG 62.515 72.222 19.93 17.17 36.09 4.61
28 29 4.514577 CCGCTCTGGCTACCGGTG 62.515 72.222 19.93 8.61 36.18 4.94
48 49 4.496336 ATTCGCCTCTGCCCTGCC 62.496 66.667 0.00 0.00 0.00 4.85
49 50 2.899339 GATTCGCCTCTGCCCTGC 60.899 66.667 0.00 0.00 0.00 4.85
50 51 2.203126 GGATTCGCCTCTGCCCTG 60.203 66.667 0.00 0.00 0.00 4.45
51 52 2.688666 TGGATTCGCCTCTGCCCT 60.689 61.111 0.00 0.00 37.63 5.19
52 53 2.514824 GTGGATTCGCCTCTGCCC 60.515 66.667 0.00 0.00 37.63 5.36
53 54 2.892425 CGTGGATTCGCCTCTGCC 60.892 66.667 0.00 0.00 37.63 4.85
54 55 2.892425 CCGTGGATTCGCCTCTGC 60.892 66.667 0.00 0.00 37.63 4.26
55 56 2.202932 CCCGTGGATTCGCCTCTG 60.203 66.667 0.00 0.00 37.63 3.35
56 57 4.162690 GCCCGTGGATTCGCCTCT 62.163 66.667 0.00 0.00 37.63 3.69
57 58 4.162690 AGCCCGTGGATTCGCCTC 62.163 66.667 0.00 0.00 37.63 4.70
58 59 4.162690 GAGCCCGTGGATTCGCCT 62.163 66.667 0.00 0.00 37.63 5.52
59 60 3.757248 ATGAGCCCGTGGATTCGCC 62.757 63.158 0.00 0.00 37.10 5.54
60 61 2.203070 ATGAGCCCGTGGATTCGC 60.203 61.111 0.00 0.00 0.00 4.70
61 62 1.951130 CGATGAGCCCGTGGATTCG 60.951 63.158 0.00 0.00 0.00 3.34
62 63 1.595382 CCGATGAGCCCGTGGATTC 60.595 63.158 0.00 0.00 0.00 2.52
63 64 2.367202 ACCGATGAGCCCGTGGATT 61.367 57.895 0.00 0.00 0.00 3.01
64 65 2.764128 ACCGATGAGCCCGTGGAT 60.764 61.111 0.00 0.00 0.00 3.41
65 66 3.770040 CACCGATGAGCCCGTGGA 61.770 66.667 0.00 0.00 0.00 4.02
66 67 3.309436 TTCACCGATGAGCCCGTGG 62.309 63.158 0.00 0.00 35.83 4.94
67 68 1.811266 CTTCACCGATGAGCCCGTG 60.811 63.158 0.00 0.00 35.83 4.94
68 69 2.579201 CTTCACCGATGAGCCCGT 59.421 61.111 0.00 0.00 35.83 5.28
69 70 2.859273 AAGCTTCACCGATGAGCCCG 62.859 60.000 0.00 0.00 35.83 6.13
70 71 1.078143 AAGCTTCACCGATGAGCCC 60.078 57.895 0.00 0.00 35.83 5.19
71 72 1.372087 CCAAGCTTCACCGATGAGCC 61.372 60.000 0.00 0.00 35.83 4.70
72 73 0.391661 TCCAAGCTTCACCGATGAGC 60.392 55.000 0.00 0.00 35.83 4.26
73 74 1.649664 CTCCAAGCTTCACCGATGAG 58.350 55.000 0.00 0.00 35.83 2.90
74 75 0.250234 CCTCCAAGCTTCACCGATGA 59.750 55.000 0.00 0.00 0.00 2.92
75 76 0.250234 TCCTCCAAGCTTCACCGATG 59.750 55.000 0.00 0.00 0.00 3.84
76 77 0.539051 CTCCTCCAAGCTTCACCGAT 59.461 55.000 0.00 0.00 0.00 4.18
77 78 0.541998 TCTCCTCCAAGCTTCACCGA 60.542 55.000 0.00 0.00 0.00 4.69
78 79 0.108424 CTCTCCTCCAAGCTTCACCG 60.108 60.000 0.00 0.00 0.00 4.94
79 80 1.206849 CTCTCTCCTCCAAGCTTCACC 59.793 57.143 0.00 0.00 0.00 4.02
80 81 1.899142 ACTCTCTCCTCCAAGCTTCAC 59.101 52.381 0.00 0.00 0.00 3.18
81 82 2.317371 ACTCTCTCCTCCAAGCTTCA 57.683 50.000 0.00 0.00 0.00 3.02
82 83 3.333804 CAAACTCTCTCCTCCAAGCTTC 58.666 50.000 0.00 0.00 0.00 3.86
83 84 2.039613 CCAAACTCTCTCCTCCAAGCTT 59.960 50.000 0.00 0.00 0.00 3.74
84 85 1.627834 CCAAACTCTCTCCTCCAAGCT 59.372 52.381 0.00 0.00 0.00 3.74
85 86 1.349357 ACCAAACTCTCTCCTCCAAGC 59.651 52.381 0.00 0.00 0.00 4.01
86 87 2.289945 CCACCAAACTCTCTCCTCCAAG 60.290 54.545 0.00 0.00 0.00 3.61
87 88 1.699634 CCACCAAACTCTCTCCTCCAA 59.300 52.381 0.00 0.00 0.00 3.53
88 89 1.352083 CCACCAAACTCTCTCCTCCA 58.648 55.000 0.00 0.00 0.00 3.86
89 90 0.035915 GCCACCAAACTCTCTCCTCC 60.036 60.000 0.00 0.00 0.00 4.30
90 91 0.687354 TGCCACCAAACTCTCTCCTC 59.313 55.000 0.00 0.00 0.00 3.71
91 92 0.689623 CTGCCACCAAACTCTCTCCT 59.310 55.000 0.00 0.00 0.00 3.69
92 93 0.322008 CCTGCCACCAAACTCTCTCC 60.322 60.000 0.00 0.00 0.00 3.71
93 94 0.322008 CCCTGCCACCAAACTCTCTC 60.322 60.000 0.00 0.00 0.00 3.20
94 95 1.763770 CCCTGCCACCAAACTCTCT 59.236 57.895 0.00 0.00 0.00 3.10
95 96 1.973812 GCCCTGCCACCAAACTCTC 60.974 63.158 0.00 0.00 0.00 3.20
96 97 2.116125 GCCCTGCCACCAAACTCT 59.884 61.111 0.00 0.00 0.00 3.24
97 98 2.203480 TGCCCTGCCACCAAACTC 60.203 61.111 0.00 0.00 0.00 3.01
98 99 2.203538 CTGCCCTGCCACCAAACT 60.204 61.111 0.00 0.00 0.00 2.66
99 100 2.203480 TCTGCCCTGCCACCAAAC 60.203 61.111 0.00 0.00 0.00 2.93
100 101 2.115910 CTCTGCCCTGCCACCAAA 59.884 61.111 0.00 0.00 0.00 3.28
101 102 3.970410 CCTCTGCCCTGCCACCAA 61.970 66.667 0.00 0.00 0.00 3.67
106 107 4.496336 ATTCGCCTCTGCCCTGCC 62.496 66.667 0.00 0.00 0.00 4.85
107 108 2.899339 GATTCGCCTCTGCCCTGC 60.899 66.667 0.00 0.00 0.00 4.85
108 109 1.227497 GAGATTCGCCTCTGCCCTG 60.227 63.158 0.00 0.00 0.00 4.45
109 110 0.105964 TAGAGATTCGCCTCTGCCCT 60.106 55.000 10.66 0.00 42.95 5.19
110 111 0.972883 ATAGAGATTCGCCTCTGCCC 59.027 55.000 10.66 0.00 42.95 5.36
111 112 1.342819 ACATAGAGATTCGCCTCTGCC 59.657 52.381 10.66 0.00 42.95 4.85
112 113 2.035193 TGACATAGAGATTCGCCTCTGC 59.965 50.000 10.66 0.00 42.95 4.26
113 114 3.998099 TGACATAGAGATTCGCCTCTG 57.002 47.619 10.66 1.45 42.95 3.35
114 115 4.798924 GCATTGACATAGAGATTCGCCTCT 60.799 45.833 0.00 0.00 44.92 3.69
115 116 3.431572 GCATTGACATAGAGATTCGCCTC 59.568 47.826 0.00 0.00 0.00 4.70
116 117 3.181462 TGCATTGACATAGAGATTCGCCT 60.181 43.478 0.00 0.00 0.00 5.52
117 118 3.133691 TGCATTGACATAGAGATTCGCC 58.866 45.455 0.00 0.00 0.00 5.54
118 119 4.272018 ACTTGCATTGACATAGAGATTCGC 59.728 41.667 0.00 0.00 0.00 4.70
119 120 5.980698 ACTTGCATTGACATAGAGATTCG 57.019 39.130 0.00 0.00 0.00 3.34
120 121 7.551035 AGAACTTGCATTGACATAGAGATTC 57.449 36.000 0.00 0.00 0.00 2.52
121 122 7.934855 AAGAACTTGCATTGACATAGAGATT 57.065 32.000 0.00 0.00 0.00 2.40
122 123 7.934855 AAAGAACTTGCATTGACATAGAGAT 57.065 32.000 0.00 0.00 0.00 2.75
123 124 7.750229 AAAAGAACTTGCATTGACATAGAGA 57.250 32.000 0.00 0.00 0.00 3.10
124 125 9.897744 TTAAAAAGAACTTGCATTGACATAGAG 57.102 29.630 0.00 0.00 0.00 2.43
125 126 9.897744 CTTAAAAAGAACTTGCATTGACATAGA 57.102 29.630 0.00 0.00 0.00 1.98
126 127 9.683069 ACTTAAAAAGAACTTGCATTGACATAG 57.317 29.630 0.00 0.00 0.00 2.23
188 189 9.495572 TCAAACTTTTTAAACATCAACCAAGTT 57.504 25.926 5.11 5.11 35.29 2.66
189 190 8.931775 GTCAAACTTTTTAAACATCAACCAAGT 58.068 29.630 0.00 0.00 0.00 3.16
190 191 9.150348 AGTCAAACTTTTTAAACATCAACCAAG 57.850 29.630 0.00 0.00 0.00 3.61
191 192 9.145865 GAGTCAAACTTTTTAAACATCAACCAA 57.854 29.630 0.00 0.00 0.00 3.67
192 193 7.486551 CGAGTCAAACTTTTTAAACATCAACCA 59.513 33.333 0.00 0.00 0.00 3.67
193 194 7.698970 TCGAGTCAAACTTTTTAAACATCAACC 59.301 33.333 0.00 0.00 0.00 3.77
194 195 8.609478 TCGAGTCAAACTTTTTAAACATCAAC 57.391 30.769 0.00 0.00 0.00 3.18
195 196 8.670135 TCTCGAGTCAAACTTTTTAAACATCAA 58.330 29.630 13.13 0.00 0.00 2.57
196 197 8.120465 GTCTCGAGTCAAACTTTTTAAACATCA 58.880 33.333 13.13 0.00 0.00 3.07
197 198 7.318205 CGTCTCGAGTCAAACTTTTTAAACATC 59.682 37.037 13.13 0.00 0.00 3.06
198 199 7.010738 TCGTCTCGAGTCAAACTTTTTAAACAT 59.989 33.333 13.13 0.00 0.00 2.71
199 200 6.310956 TCGTCTCGAGTCAAACTTTTTAAACA 59.689 34.615 13.13 0.00 0.00 2.83
200 201 6.699063 TCGTCTCGAGTCAAACTTTTTAAAC 58.301 36.000 13.13 0.00 0.00 2.01
201 202 6.890663 TCGTCTCGAGTCAAACTTTTTAAA 57.109 33.333 13.13 0.00 0.00 1.52
202 203 6.509039 GCTTCGTCTCGAGTCAAACTTTTTAA 60.509 38.462 13.13 0.00 37.14 1.52
203 204 5.051240 GCTTCGTCTCGAGTCAAACTTTTTA 60.051 40.000 13.13 0.00 37.14 1.52
204 205 4.260253 GCTTCGTCTCGAGTCAAACTTTTT 60.260 41.667 13.13 0.00 37.14 1.94
205 206 3.245519 GCTTCGTCTCGAGTCAAACTTTT 59.754 43.478 13.13 0.00 37.14 2.27
206 207 2.795470 GCTTCGTCTCGAGTCAAACTTT 59.205 45.455 13.13 0.00 37.14 2.66
207 208 2.034812 AGCTTCGTCTCGAGTCAAACTT 59.965 45.455 13.13 0.00 37.14 2.66
208 209 1.609555 AGCTTCGTCTCGAGTCAAACT 59.390 47.619 13.13 2.00 37.14 2.66
209 210 2.053282 AGCTTCGTCTCGAGTCAAAC 57.947 50.000 13.13 1.83 37.14 2.93
210 211 3.909776 TTAGCTTCGTCTCGAGTCAAA 57.090 42.857 13.13 0.00 37.14 2.69
211 212 5.752892 ATATTAGCTTCGTCTCGAGTCAA 57.247 39.130 13.13 3.00 37.14 3.18
212 213 6.649557 TCATATATTAGCTTCGTCTCGAGTCA 59.350 38.462 13.13 0.00 37.14 3.41
213 214 7.062906 TCATATATTAGCTTCGTCTCGAGTC 57.937 40.000 13.13 5.89 37.14 3.36
214 215 7.173562 ACTTCATATATTAGCTTCGTCTCGAGT 59.826 37.037 13.13 0.00 37.14 4.18
215 216 7.523219 ACTTCATATATTAGCTTCGTCTCGAG 58.477 38.462 5.93 5.93 37.14 4.04
216 217 7.436430 ACTTCATATATTAGCTTCGTCTCGA 57.564 36.000 0.00 0.00 0.00 4.04
217 218 8.657729 TCTACTTCATATATTAGCTTCGTCTCG 58.342 37.037 0.00 0.00 0.00 4.04
218 219 9.982291 CTCTACTTCATATATTAGCTTCGTCTC 57.018 37.037 0.00 0.00 0.00 3.36
219 220 9.509956 ACTCTACTTCATATATTAGCTTCGTCT 57.490 33.333 0.00 0.00 0.00 4.18
235 236 9.211485 CCTTCCGTTTTTATTTACTCTACTTCA 57.789 33.333 0.00 0.00 0.00 3.02
236 237 9.428097 TCCTTCCGTTTTTATTTACTCTACTTC 57.572 33.333 0.00 0.00 0.00 3.01
237 238 9.433153 CTCCTTCCGTTTTTATTTACTCTACTT 57.567 33.333 0.00 0.00 0.00 2.24
238 239 8.591940 ACTCCTTCCGTTTTTATTTACTCTACT 58.408 33.333 0.00 0.00 0.00 2.57
239 240 8.768957 ACTCCTTCCGTTTTTATTTACTCTAC 57.231 34.615 0.00 0.00 0.00 2.59
240 241 9.860898 GTACTCCTTCCGTTTTTATTTACTCTA 57.139 33.333 0.00 0.00 0.00 2.43
241 242 8.370182 TGTACTCCTTCCGTTTTTATTTACTCT 58.630 33.333 0.00 0.00 0.00 3.24
242 243 8.538409 TGTACTCCTTCCGTTTTTATTTACTC 57.462 34.615 0.00 0.00 0.00 2.59
243 244 8.907222 TTGTACTCCTTCCGTTTTTATTTACT 57.093 30.769 0.00 0.00 0.00 2.24
244 245 9.550811 CATTGTACTCCTTCCGTTTTTATTTAC 57.449 33.333 0.00 0.00 0.00 2.01
245 246 9.287373 ACATTGTACTCCTTCCGTTTTTATTTA 57.713 29.630 0.00 0.00 0.00 1.40
246 247 8.173542 ACATTGTACTCCTTCCGTTTTTATTT 57.826 30.769 0.00 0.00 0.00 1.40
247 248 7.754851 ACATTGTACTCCTTCCGTTTTTATT 57.245 32.000 0.00 0.00 0.00 1.40
248 249 7.754851 AACATTGTACTCCTTCCGTTTTTAT 57.245 32.000 0.00 0.00 0.00 1.40
249 250 8.674263 TTAACATTGTACTCCTTCCGTTTTTA 57.326 30.769 0.00 0.00 0.00 1.52
250 251 7.571080 TTAACATTGTACTCCTTCCGTTTTT 57.429 32.000 0.00 0.00 0.00 1.94
251 252 7.571080 TTTAACATTGTACTCCTTCCGTTTT 57.429 32.000 0.00 0.00 0.00 2.43
252 253 7.754851 ATTTAACATTGTACTCCTTCCGTTT 57.245 32.000 0.00 0.00 0.00 3.60
253 254 7.754851 AATTTAACATTGTACTCCTTCCGTT 57.245 32.000 0.00 0.00 0.00 4.44
254 255 7.754851 AAATTTAACATTGTACTCCTTCCGT 57.245 32.000 0.00 0.00 0.00 4.69
277 278 5.929992 CACCCTCGGCGATAAGATATAAAAA 59.070 40.000 11.27 0.00 0.00 1.94
278 279 5.244402 TCACCCTCGGCGATAAGATATAAAA 59.756 40.000 11.27 0.00 0.00 1.52
279 280 4.768448 TCACCCTCGGCGATAAGATATAAA 59.232 41.667 11.27 0.00 0.00 1.40
280 281 4.338012 TCACCCTCGGCGATAAGATATAA 58.662 43.478 11.27 0.00 0.00 0.98
281 282 3.959293 TCACCCTCGGCGATAAGATATA 58.041 45.455 11.27 0.00 0.00 0.86
282 283 2.803956 TCACCCTCGGCGATAAGATAT 58.196 47.619 11.27 0.00 0.00 1.63
283 284 2.281539 TCACCCTCGGCGATAAGATA 57.718 50.000 11.27 0.00 0.00 1.98
284 285 1.410004 TTCACCCTCGGCGATAAGAT 58.590 50.000 11.27 0.00 0.00 2.40
285 286 1.187974 TTTCACCCTCGGCGATAAGA 58.812 50.000 11.27 3.56 0.00 2.10
286 287 2.135933 GATTTCACCCTCGGCGATAAG 58.864 52.381 11.27 4.59 0.00 1.73
287 288 1.760613 AGATTTCACCCTCGGCGATAA 59.239 47.619 11.27 0.00 0.00 1.75
288 289 1.068588 CAGATTTCACCCTCGGCGATA 59.931 52.381 11.27 0.00 0.00 2.92
289 290 0.179073 CAGATTTCACCCTCGGCGAT 60.179 55.000 11.27 0.00 0.00 4.58
290 291 1.218047 CAGATTTCACCCTCGGCGA 59.782 57.895 10.14 10.14 0.00 5.54
291 292 0.673644 AACAGATTTCACCCTCGGCG 60.674 55.000 0.00 0.00 0.00 6.46
292 293 1.468914 GAAACAGATTTCACCCTCGGC 59.531 52.381 0.00 0.00 43.29 5.54
345 346 4.853924 TTGGGCAAGTTTGATCTTTCTC 57.146 40.909 0.00 0.00 0.00 2.87
354 355 5.610398 AGGATAACTTTTTGGGCAAGTTTG 58.390 37.500 6.07 0.00 40.83 2.93
374 375 1.855599 GGTAGGTGTAGGTCCCTAGGA 59.144 57.143 11.48 0.00 34.04 2.94
418 419 3.307242 GCATCGAAATCTGTACTGTCACC 59.693 47.826 0.00 0.00 0.00 4.02
425 426 5.530519 TGAACTTGCATCGAAATCTGTAC 57.469 39.130 0.00 0.00 0.00 2.90
436 437 3.494626 TCGTCTTCTGTTGAACTTGCATC 59.505 43.478 0.00 0.00 0.00 3.91
439 440 4.474226 AATCGTCTTCTGTTGAACTTGC 57.526 40.909 0.00 0.00 0.00 4.01
440 441 7.376072 GGTTAAAATCGTCTTCTGTTGAACTTG 59.624 37.037 0.00 0.00 0.00 3.16
441 442 7.282450 AGGTTAAAATCGTCTTCTGTTGAACTT 59.718 33.333 0.00 0.00 0.00 2.66
442 443 6.766467 AGGTTAAAATCGTCTTCTGTTGAACT 59.234 34.615 0.00 0.00 0.00 3.01
443 444 6.956047 AGGTTAAAATCGTCTTCTGTTGAAC 58.044 36.000 0.00 0.00 0.00 3.18
444 445 7.172019 GGTAGGTTAAAATCGTCTTCTGTTGAA 59.828 37.037 0.00 0.00 0.00 2.69
445 446 6.647895 GGTAGGTTAAAATCGTCTTCTGTTGA 59.352 38.462 0.00 0.00 0.00 3.18
446 447 6.128363 GGGTAGGTTAAAATCGTCTTCTGTTG 60.128 42.308 0.00 0.00 0.00 3.33
447 448 5.936372 GGGTAGGTTAAAATCGTCTTCTGTT 59.064 40.000 0.00 0.00 0.00 3.16
448 449 5.247792 AGGGTAGGTTAAAATCGTCTTCTGT 59.752 40.000 0.00 0.00 0.00 3.41
572 573 1.973515 TCTCTCGGCTCGTATAGGGTA 59.026 52.381 0.00 0.00 0.00 3.69
573 574 0.763652 TCTCTCGGCTCGTATAGGGT 59.236 55.000 0.00 0.00 0.00 4.34
574 575 1.158434 GTCTCTCGGCTCGTATAGGG 58.842 60.000 0.00 0.00 0.00 3.53
575 576 0.791422 CGTCTCTCGGCTCGTATAGG 59.209 60.000 0.00 0.00 35.71 2.57
586 594 1.213013 CCACTTGGTCCGTCTCTCG 59.787 63.158 0.00 0.00 39.52 4.04
607 616 1.325355 GGGTCGTCGAGATTCCCATA 58.675 55.000 12.56 0.00 35.73 2.74
679 688 3.805497 GCCCGGGTTAGGAAGGGG 61.805 72.222 24.63 0.00 43.95 4.79
723 749 0.598562 CCGTGAGATATGACGAGGGG 59.401 60.000 0.00 0.00 37.81 4.79
868 902 0.599204 ATGACAACCCACGTGTCGAC 60.599 55.000 15.65 9.11 46.89 4.20
1054 1105 2.449967 TAGTGAGGGGGCTGGTTCGA 62.450 60.000 0.00 0.00 0.00 3.71
1065 1116 1.139058 CGGGAGATTGGTTAGTGAGGG 59.861 57.143 0.00 0.00 0.00 4.30
1068 1119 1.480954 GCTCGGGAGATTGGTTAGTGA 59.519 52.381 0.00 0.00 38.80 3.41
1069 1120 1.802880 CGCTCGGGAGATTGGTTAGTG 60.803 57.143 0.00 0.00 38.80 2.74
1070 1121 0.460311 CGCTCGGGAGATTGGTTAGT 59.540 55.000 0.00 0.00 38.80 2.24
1105 1462 4.016706 ACGAACGGGGGCTTGAGG 62.017 66.667 0.00 0.00 0.00 3.86
1400 1764 2.589157 CGTGGCCTTCCAGTACCCA 61.589 63.158 3.32 0.00 44.48 4.51
1653 2048 3.426859 CGGTAAATCTCTCGCTAATGCTG 59.573 47.826 0.00 0.00 36.97 4.41
1677 2072 4.873827 CCCGGTCGATCTCTTTTTAAATGA 59.126 41.667 0.00 0.00 0.00 2.57
1684 2079 1.848652 TCTCCCGGTCGATCTCTTTT 58.151 50.000 0.00 0.00 0.00 2.27
1685 2080 1.957877 GATCTCCCGGTCGATCTCTTT 59.042 52.381 18.11 0.00 34.59 2.52
1690 2086 1.957877 AGAAAGATCTCCCGGTCGATC 59.042 52.381 17.84 17.84 37.02 3.69
1771 2167 2.610232 CCCTTGTTCTTTTTCGCATGGG 60.610 50.000 2.76 2.76 39.08 4.00
1797 2193 2.833533 GCGTGCTGCAACTTGACCA 61.834 57.895 2.77 0.00 45.45 4.02
1854 2263 2.875711 CCGCAATTGCTTTCCGCG 60.876 61.111 26.86 12.50 45.25 6.46
1855 2264 3.181290 GCCGCAATTGCTTTCCGC 61.181 61.111 26.86 15.99 39.32 5.54
1856 2265 2.875711 CGCCGCAATTGCTTTCCG 60.876 61.111 26.86 18.53 39.32 4.30
1857 2266 2.506881 CCGCCGCAATTGCTTTCC 60.507 61.111 26.86 11.65 39.32 3.13
2031 2448 1.352017 TCCAGCTGCAAAGATCAGGAA 59.648 47.619 8.66 0.00 32.41 3.36
2614 3031 0.252974 TAGTGGGGGCTGCTAAGGAA 60.253 55.000 0.00 0.00 0.00 3.36
2665 3084 2.159517 GCACGCCTAATCAGTTTTCCTG 60.160 50.000 0.00 0.00 42.97 3.86
2666 3085 2.084546 GCACGCCTAATCAGTTTTCCT 58.915 47.619 0.00 0.00 0.00 3.36
2667 3086 1.810151 TGCACGCCTAATCAGTTTTCC 59.190 47.619 0.00 0.00 0.00 3.13
2668 3087 3.552604 TTGCACGCCTAATCAGTTTTC 57.447 42.857 0.00 0.00 0.00 2.29
2669 3088 3.857010 GCTTTGCACGCCTAATCAGTTTT 60.857 43.478 0.00 0.00 0.00 2.43
2670 3089 2.351738 GCTTTGCACGCCTAATCAGTTT 60.352 45.455 0.00 0.00 0.00 2.66
2671 3090 1.200020 GCTTTGCACGCCTAATCAGTT 59.800 47.619 0.00 0.00 0.00 3.16
2672 3091 0.804989 GCTTTGCACGCCTAATCAGT 59.195 50.000 0.00 0.00 0.00 3.41
2673 3092 1.089920 AGCTTTGCACGCCTAATCAG 58.910 50.000 3.69 0.00 0.00 2.90
2674 3093 1.468520 GAAGCTTTGCACGCCTAATCA 59.531 47.619 0.00 0.00 0.00 2.57
2675 3094 1.202188 GGAAGCTTTGCACGCCTAATC 60.202 52.381 0.00 0.00 0.00 1.75
2676 3095 0.811281 GGAAGCTTTGCACGCCTAAT 59.189 50.000 0.00 0.00 0.00 1.73
2677 3096 1.573829 CGGAAGCTTTGCACGCCTAA 61.574 55.000 0.00 0.00 0.00 2.69
2678 3097 2.032634 CGGAAGCTTTGCACGCCTA 61.033 57.895 0.00 0.00 0.00 3.93
2679 3098 3.357079 CGGAAGCTTTGCACGCCT 61.357 61.111 0.00 0.00 0.00 5.52
2680 3099 2.400896 TTTCGGAAGCTTTGCACGCC 62.401 55.000 0.00 0.00 0.00 5.68
2681 3100 1.008995 TTTCGGAAGCTTTGCACGC 60.009 52.632 0.00 0.00 0.00 5.34
2682 3101 0.660300 GGTTTCGGAAGCTTTGCACG 60.660 55.000 0.00 3.93 0.00 5.34
2683 3102 0.668535 AGGTTTCGGAAGCTTTGCAC 59.331 50.000 1.24 0.00 40.54 4.57
2684 3103 2.264005 TAGGTTTCGGAAGCTTTGCA 57.736 45.000 14.42 0.00 43.06 4.08
2685 3104 3.136808 CATAGGTTTCGGAAGCTTTGC 57.863 47.619 14.42 0.00 43.06 3.68
2686 3105 2.487762 TGCATAGGTTTCGGAAGCTTTG 59.512 45.455 14.42 16.79 43.06 2.77
2687 3106 2.749621 CTGCATAGGTTTCGGAAGCTTT 59.250 45.455 14.42 2.70 43.06 3.51
2702 3121 8.306313 TCACTAAGTTTCCTCTAATCTGCATA 57.694 34.615 0.00 0.00 0.00 3.14
2716 3135 4.331992 GCGGGTTAATCCTCACTAAGTTTC 59.668 45.833 2.61 0.00 36.25 2.78
2802 3221 6.239008 GGCTAACACCTGGTATGTACGTATAA 60.239 42.308 0.00 0.00 0.00 0.98
2803 3222 5.241506 GGCTAACACCTGGTATGTACGTATA 59.758 44.000 0.00 0.00 0.00 1.47
2804 3223 4.038402 GGCTAACACCTGGTATGTACGTAT 59.962 45.833 0.00 0.00 0.00 3.06
2905 3327 4.060038 CCAAGCGGCAGCCAAAGG 62.060 66.667 13.30 3.37 46.67 3.11
3040 3462 1.266989 GCTCCTGAACCCAAAACTTCG 59.733 52.381 0.00 0.00 0.00 3.79
3164 3591 9.409312 CAATTACAATTACACATGACACAACAT 57.591 29.630 0.00 0.00 0.00 2.71
3228 3772 0.613777 GATTTCCAGGTCACCCGAGT 59.386 55.000 0.00 0.00 35.12 4.18
3340 3884 1.140804 ACAACCGTGCAAGCAAACC 59.859 52.632 0.00 0.00 0.00 3.27
3362 4205 4.033358 GCATGACTAGATTCAGAACCAACG 59.967 45.833 0.00 0.00 0.00 4.10
3432 4302 5.532779 ACCAAAAGAGAAGGAATCACACTTC 59.467 40.000 0.00 0.00 42.56 3.01
3442 4312 4.381505 GCAACAACAACCAAAAGAGAAGGA 60.382 41.667 0.00 0.00 0.00 3.36
3456 4326 1.523154 GAGATGCCCCGCAACAACAA 61.523 55.000 0.00 0.00 43.62 2.83
3465 4335 1.300465 CATGACTCGAGATGCCCCG 60.300 63.158 21.68 0.00 0.00 5.73
3577 6792 7.548196 TGAGTTCACTTGAAACTATTTTCGT 57.452 32.000 1.63 0.00 43.71 3.85
3636 6852 7.796838 TGTCAAGATCGTATTTTCTGAAACAG 58.203 34.615 1.58 0.00 0.00 3.16
3651 6870 4.675190 AGCATGAAAGTTGTCAAGATCG 57.325 40.909 0.00 0.00 0.00 3.69
3656 6875 4.847633 CTTCGAAGCATGAAAGTTGTCAA 58.152 39.130 13.09 0.00 0.00 3.18
3693 6912 9.127277 GATTGCCCATTAAACTAGGTTATGTTA 57.873 33.333 0.00 0.00 0.00 2.41
3728 6947 8.665643 TTCTTGACGTAACCTTGAAGAAATTA 57.334 30.769 0.00 0.00 0.00 1.40
3730 6949 7.745620 ATTCTTGACGTAACCTTGAAGAAAT 57.254 32.000 0.00 0.00 34.17 2.17
3734 6954 6.750501 TCGATATTCTTGACGTAACCTTGAAG 59.249 38.462 0.00 0.00 0.00 3.02
3742 6962 9.216117 TCTATGATCTCGATATTCTTGACGTAA 57.784 33.333 0.00 0.00 0.00 3.18
3758 6978 5.991933 TGGCACCTTCTATCTATGATCTC 57.008 43.478 0.00 0.00 0.00 2.75
3767 6987 4.142609 TGTCATCTTGGCACCTTCTATC 57.857 45.455 0.00 0.00 0.00 2.08
3811 8664 9.555727 GTAGATATTTGGTGCTTGGAAATAGTA 57.444 33.333 0.00 0.00 0.00 1.82
3849 8702 8.200792 GGCTCTACCAGAGATTTGTATATATGG 58.799 40.741 7.37 0.00 45.07 2.74
3850 8703 8.976353 AGGCTCTACCAGAGATTTGTATATATG 58.024 37.037 7.37 0.00 45.07 1.78
3865 8724 4.342378 TGAGTGCTATAAAGGCTCTACCAG 59.658 45.833 0.00 0.00 43.14 4.00
4061 8923 4.716784 TCCATTACAACCTATCTGCAGTCT 59.283 41.667 14.67 5.18 0.00 3.24
4062 8924 5.023533 TCCATTACAACCTATCTGCAGTC 57.976 43.478 14.67 0.00 0.00 3.51
4063 8925 4.141620 CCTCCATTACAACCTATCTGCAGT 60.142 45.833 14.67 3.75 0.00 4.40
4064 8926 4.384056 CCTCCATTACAACCTATCTGCAG 58.616 47.826 7.63 7.63 0.00 4.41
4065 8927 3.136443 CCCTCCATTACAACCTATCTGCA 59.864 47.826 0.00 0.00 0.00 4.41
4066 8928 3.496870 CCCCTCCATTACAACCTATCTGC 60.497 52.174 0.00 0.00 0.00 4.26
4067 8929 3.973973 TCCCCTCCATTACAACCTATCTG 59.026 47.826 0.00 0.00 0.00 2.90
4068 8930 4.295905 TCCCCTCCATTACAACCTATCT 57.704 45.455 0.00 0.00 0.00 1.98
4114 8976 7.325660 AGGTGCTTAATCAAGACAATACATG 57.674 36.000 0.00 0.00 33.20 3.21
4168 11380 8.310122 AGTAAATTTACCTTTGGATGCATGAT 57.690 30.769 21.92 0.00 34.19 2.45
4205 11417 3.569194 TGCTTAAAACTGGAGTGTCCA 57.431 42.857 0.00 0.00 45.98 4.02
4211 11423 5.108385 ACAACGATTGCTTAAAACTGGAG 57.892 39.130 0.00 0.00 0.00 3.86
4216 11428 7.376072 GCCATAGATACAACGATTGCTTAAAAC 59.624 37.037 0.00 0.00 0.00 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.