AutoCloner

Multiple sequence alignment - TraesCS4D01G094200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS4D01G094200	chr4D	100.000	4905	0	0	1	4905	69644869	69649773	0.000000e+00	9058.0
1	TraesCS4D01G094200	chr4D	81.618	136	20	3	1536	1670	509453773	509453642	1.870000e-19	108.0
2	TraesCS4D01G094200	chr4B	92.375	5010	237	62	1	4905	103002616	103007585	0.000000e+00	7001.0
3	TraesCS4D01G094200	chr4B	87.640	89	10	1	4817	4905	657284549	657284636	8.690000e-18	102.0
4	TraesCS4D01G094200	chr4A	95.521	3081	91	17	1847	4905	521813159	521816214	0.000000e+00	4881.0
5	TraesCS4D01G094200	chr4A	91.113	1429	74	29	410	1801	521811743	521813155	0.000000e+00	1886.0
6	TraesCS4D01G094200	chr4A	93.766	401	24	1	3	402	521811300	521811700	7.030000e-168	601.0
7	TraesCS4D01G094200	chr4A	81.399	586	56	29	1026	1609	564728009	564727475	3.510000e-116	429.0
8	TraesCS4D01G094200	chr3D	98.050	1744	18	2	2115	3843	567166156	567164414	0.000000e+00	3018.0
9	TraesCS4D01G094200	chr3D	84.567	473	56	8	3359	3818	554382163	554382631	2.080000e-123	453.0
10	TraesCS4D01G094200	chr3D	84.138	290	31	12	1322	1609	504065829	504066105	2.910000e-67	267.0
11	TraesCS4D01G094200	chr1D	95.608	1685	28	15	2176	3843	26569462	26567807	0.000000e+00	2660.0
12	TraesCS4D01G094200	chr7B	80.129	775	141	9	3129	3893	732087197	732087968	2.560000e-157	566.0
13	TraesCS4D01G094200	chr7B	80.000	775	141	10	3129	3893	731961441	731962211	1.190000e-155	560.0
14	TraesCS4D01G094200	chrUn	80.000	775	142	9	3129	3893	88429641	88430412	1.190000e-155	560.0
15	TraesCS4D01G094200	chrUn	80.000	775	142	9	3129	3893	160383506	160384277	1.190000e-155	560.0
16	TraesCS4D01G094200	chrUn	82.151	437	76	2	3129	3564	435951464	435951899	1.670000e-99	374.0
17	TraesCS4D01G094200	chr6B	80.229	349	42	18	1264	1609	695072989	695072665	2.280000e-58	237.0
18	TraesCS4D01G094200	chr6B	81.618	136	20	3	1536	1670	117125934	117126065	1.870000e-19	108.0
19	TraesCS4D01G094200	chr6B	94.444	54	2	1	10	62	439524762	439524815	1.130000e-11	82.4
20	TraesCS4D01G094200	chr2A	90.132	152	11	3	1459	1609	526300176	526300324	1.390000e-45	195.0
21	TraesCS4D01G094200	chr2A	96.875	32	1	0	700	731	744446355	744446324	2.000000e-03	54.7
22	TraesCS4D01G094200	chr5A	88.535	157	14	3	1454	1609	546817245	546817398	2.330000e-43	187.0
23	TraesCS4D01G094200	chr5A	89.011	91	7	2	4817	4905	698349750	698349661	5.190000e-20	110.0
24	TraesCS4D01G094200	chr5A	89.873	79	8	0	4827	4905	698334980	698334902	8.690000e-18	102.0
25	TraesCS4D01G094200	chr7A	86.207	174	18	4	1438	1609	692500835	692501004	3.020000e-42	183.0
26	TraesCS4D01G094200	chr7A	85.542	166	14	4	1119	1284	692500390	692500545	1.090000e-36	165.0
27	TraesCS4D01G094200	chr6D	82.353	136	19	3	1536	1670	54079585	54079454	4.010000e-21	113.0
28	TraesCS4D01G094200	chr6D	98.000	50	1	0	12	61	407203925	407203974	2.430000e-13	87.9
29	TraesCS4D01G094200	chr5B	98.000	50	1	0	13	62	464317535	464317584	2.430000e-13	87.9
30	TraesCS4D01G094200	chr5B	96.226	53	2	0	10	62	599328973	599328921	2.430000e-13	87.9
31	TraesCS4D01G094200	chr5B	96.154	52	2	0	13	64	464314844	464314895	8.750000e-13	86.1
32	TraesCS4D01G094200	chr5B	96.226	53	1	1	13	64	464318882	464318934	8.750000e-13	86.1
33	TraesCS4D01G094200	chr5B	96.226	53	1	1	13	64	464320229	464320281	8.750000e-13	86.1
34	TraesCS4D01G094200	chr7D	90.476	42	4	0	700	741	199481065	199481024	6.860000e-04	56.5

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS4D01G094200	chr4D	69644869	69649773	4904	False	9058	9058	100.000000	1	4905	1	chr4D.!!$F1	4904
1	TraesCS4D01G094200	chr4B	103002616	103007585	4969	False	7001	7001	92.375000	1	4905	1	chr4B.!!$F1	4904
2	TraesCS4D01G094200	chr4A	521811300	521816214	4914	False	2456	4881	93.466667	3	4905	3	chr4A.!!$F1	4902
3	TraesCS4D01G094200	chr4A	564727475	564728009	534	True	429	429	81.399000	1026	1609	1	chr4A.!!$R1	583
4	TraesCS4D01G094200	chr3D	567164414	567166156	1742	True	3018	3018	98.050000	2115	3843	1	chr3D.!!$R1	1728
5	TraesCS4D01G094200	chr1D	26567807	26569462	1655	True	2660	2660	95.608000	2176	3843	1	chr1D.!!$R1	1667
6	TraesCS4D01G094200	chr7B	732087197	732087968	771	False	566	566	80.129000	3129	3893	1	chr7B.!!$F2	764
7	TraesCS4D01G094200	chr7B	731961441	731962211	770	False	560	560	80.000000	3129	3893	1	chr7B.!!$F1	764
8	TraesCS4D01G094200	chrUn	88429641	88430412	771	False	560	560	80.000000	3129	3893	1	chrUn.!!$F1	764
9	TraesCS4D01G094200	chrUn	160383506	160384277	771	False	560	560	80.000000	3129	3893	1	chrUn.!!$F2	764

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
659	719	0.034574	TTGCCATGCCCGTCAACTAT	60.035	50.000	0.00	0.0	0.00	2.12	F
831	892	0.107654	ATGAGTAACCGGGCAGAAGC	60.108	55.000	6.32	0.0	41.10	3.86	F
1562	1639	0.451783	CCCGTTTCTGCAGGCATTAC	59.548	55.000	15.13	4.4	0.00	1.89	F
1750	1831	4.188247	TCAACTCCAGTATCCAAGTTCG	57.812	45.455	0.00	0.0	29.78	3.95	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1543	1620	0.451783	GTAATGCCTGCAGAAACGGG	59.548	55.000	17.39	0.00	39.28	5.28	R
1703	1780	1.788308	CCGTGCAACTCAAGCAATTTG	59.212	47.619	0.00	0.00	44.64	2.32	R
3036	3154	6.449698	ACACGGAATGTAAACCCTATATACG	58.550	40.000	0.00	0.00	40.88	3.06	R
3941	4073	0.819259	TTGAGGTGCAGCCAGTGTTC	60.819	55.000	13.29	2.77	40.61	3.18	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
23	24	5.837437	TGGTTGTAATTTTTGTACTGCCAG	58.163	37.500	0.00	0.00	0.00	4.85
78	83	3.883830	AAAAGTCAAATGTGTGGTGCA	57.116	38.095	0.00	0.00	0.00	4.57
145	150	1.404315	GCTTGTCCGTCTTAGTCCCAG	60.404	57.143	0.00	0.00	0.00	4.45
322	328	3.078837	TCGTTGGTCTCCATTTTTAGGC	58.921	45.455	0.00	0.00	31.53	3.93
323	329	2.817258	CGTTGGTCTCCATTTTTAGGCA	59.183	45.455	0.00	0.00	31.53	4.75
382	388	4.096382	CGGGATTAAAACCAGAGTCCAATG	59.904	45.833	4.80	0.00	0.00	2.82
415	456	8.863872	ACTGTACCTTTAGCATCTTAAACAAT	57.136	30.769	0.00	0.00	0.00	2.71
523	565	9.165035	GAATTTTCAGGCAAATTGAATATCCAA	57.835	29.630	0.00	0.00	36.64	3.53
555	597	8.680903	GTCAGATTTTCAGATATGACAAATGGT	58.319	33.333	12.23	2.06	43.95	3.55
627	669	5.239359	TGAGCATAGCAAATTCACATCAC	57.761	39.130	0.00	0.00	0.00	3.06
630	672	6.071784	TGAGCATAGCAAATTCACATCACTTT	60.072	34.615	0.00	0.00	0.00	2.66
631	673	6.694447	AGCATAGCAAATTCACATCACTTTT	58.306	32.000	0.00	0.00	0.00	2.27
659	719	0.034574	TTGCCATGCCCGTCAACTAT	60.035	50.000	0.00	0.00	0.00	2.12
660	720	0.034574	TGCCATGCCCGTCAACTATT	60.035	50.000	0.00	0.00	0.00	1.73
675	735	1.818060	ACTATTTTTGCCATCTGCGCA	59.182	42.857	10.98	10.98	45.60	6.09
686	746	4.161333	GCCATCTGCGCATCAATATAAAC	58.839	43.478	12.24	0.00	0.00	2.01
690	750	4.129380	TCTGCGCATCAATATAAACTGCT	58.871	39.130	12.24	0.00	0.00	4.24
697	757	7.293745	CGCATCAATATAAACTGCTAGGAAAG	58.706	38.462	0.00	0.00	0.00	2.62
698	758	7.571983	CGCATCAATATAAACTGCTAGGAAAGG	60.572	40.741	0.00	0.00	0.00	3.11
722	782	4.450419	CGTTCAATTTGCCATGCCTAAAAA	59.550	37.500	0.00	0.00	0.00	1.94
732	792	5.181811	TGCCATGCCTAAAAATCTGATATCG	59.818	40.000	0.00	0.00	0.00	2.92
831	892	0.107654	ATGAGTAACCGGGCAGAAGC	60.108	55.000	6.32	0.00	41.10	3.86
974	1035	3.574445	CGAGCGATCCGTCCGTCT	61.574	66.667	0.00	0.00	0.00	4.18
987	1048	4.680237	CGTCTGCCGCCACCTTCA	62.680	66.667	0.00	0.00	0.00	3.02
995	1063	2.669133	CGCCACCTTCATCCCCTCA	61.669	63.158	0.00	0.00	0.00	3.86
997	1065	1.609783	CCACCTTCATCCCCTCACC	59.390	63.158	0.00	0.00	0.00	4.02
1140	1208	2.360475	GTGTTCCAGCTCCAGGGC	60.360	66.667	0.00	0.00	0.00	5.19
1201	1269	2.648059	CCTGATCAGATTGGGTTGGTC	58.352	52.381	24.62	0.00	0.00	4.02
1208	1276	1.923148	AGATTGGGTTGGTCCTTAGGG	59.077	52.381	0.00	0.00	36.25	3.53
1233	1301	1.594293	CGGGTTCTGTTCTGTGCGT	60.594	57.895	0.00	0.00	0.00	5.24
1284	1352	2.307934	TTTGCAGCTTTGGTTGGTTC	57.692	45.000	0.00	0.00	0.00	3.62
1292	1360	2.535331	CTTTGGTTGGTTCGTTGGTTG	58.465	47.619	0.00	0.00	0.00	3.77
1293	1361	0.818296	TTGGTTGGTTCGTTGGTTGG	59.182	50.000	0.00	0.00	0.00	3.77
1357	1425	1.663695	CGGGCGTTGATGTTAATCCT	58.336	50.000	0.00	0.00	31.15	3.24
1392	1460	4.079253	GGCACAAAGTCCAAGAATCCTTA	58.921	43.478	0.00	0.00	0.00	2.69
1543	1620	6.645700	TTGCTTGTTCACAAATTTTCTGTC	57.354	33.333	0.00	0.00	35.15	3.51
1562	1639	0.451783	CCCGTTTCTGCAGGCATTAC	59.548	55.000	15.13	4.40	0.00	1.89
1700	1777	5.346281	GCACTACGCCTCAATGTTATATCTC	59.654	44.000	0.00	0.00	32.94	2.75
1703	1780	4.632153	ACGCCTCAATGTTATATCTCACC	58.368	43.478	0.00	0.00	0.00	4.02
1750	1831	4.188247	TCAACTCCAGTATCCAAGTTCG	57.812	45.455	0.00	0.00	29.78	3.95
1829	1910	8.228035	TGTTAAAAGTAGCATGTACCAACTTT	57.772	30.769	0.00	1.44	40.98	2.66
1876	1957	7.865875	TTGTGATATTTTCCGTCAAAACATG	57.134	32.000	0.00	0.00	36.78	3.21
2281	2364	9.177927	ACCTCACCTTTGGGTAATAATATATGA	57.822	33.333	0.00	0.00	45.41	2.15
2308	2391	9.023967	CAATTTATGTTTCATTGCCTTAGTAGC	57.976	33.333	0.00	0.00	0.00	3.58
3036	3154	0.251341	ACCACCTGAACTGAATGCCC	60.251	55.000	0.00	0.00	0.00	5.36
3941	4073	8.758633	ATCTAAATCATTAACCTATCCGTTCG	57.241	34.615	0.00	0.00	0.00	3.95
4000	4132	9.787532	CCATCCAAATAAAAGTACTGTATGTTG	57.212	33.333	0.00	0.00	0.00	3.33
4089	4221	7.436673	CAGATGTAGGCAGATAAAGTTACTGAC	59.563	40.741	0.00	0.00	39.66	3.51
4110	4242	5.248248	TGACATGTATTCTCCTCCTGTTCAA	59.752	40.000	0.00	0.00	0.00	2.69
4266	4398	6.731292	ATCATACTACCTGCACATACTGAA	57.269	37.500	0.00	0.00	0.00	3.02
4271	4403	5.907207	ACTACCTGCACATACTGAACTATG	58.093	41.667	0.00	0.00	0.00	2.23
4388	4532	2.298610	TCTGATCACGCGGTCTCTTAT	58.701	47.619	12.47	0.00	0.00	1.73
4432	4576	3.916172	CAGGTTCAAATTTGCACAGATCG	59.084	43.478	20.13	2.65	0.00	3.69
4507	4652	1.154035	GGTGGCGCATGCTTAACAC	60.154	57.895	17.13	17.16	42.25	3.32
4773	4921	6.033341	CGAGGAGAGTAGAAAATGACAGAAG	58.967	44.000	0.00	0.00	0.00	2.85
4799	4947	8.930846	AGGGAGAATGTTTCTAAATATGATGG	57.069	34.615	0.00	0.00	40.87	3.51
4854	5002	6.176183	AGTTGCAACTATCTAACTGAATGCT	58.824	36.000	30.25	0.00	37.52	3.79
4876	5025	5.731686	GCTGCTACTGTCATCCAAATAAAGC	60.732	44.000	0.00	0.00	0.00	3.51

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
20	21	8.687292	TTCAATCTATTCATCTTCAATCCTGG	57.313	34.615	0.00	0.00	0.00	4.45
78	83	4.232188	TCAGGGTATAAGACGTCTCTGT	57.768	45.455	20.33	10.33	0.00	3.41
145	150	6.015434	TCACTTCTCTTTTTAAATGGCCTTCC	60.015	38.462	3.32	0.00	0.00	3.46
202	207	3.324846	TCAGACCATCACTTGCTTGTAGT	59.675	43.478	0.00	0.00	0.00	2.73
322	328	9.001542	TGGATAATTTTCCTTGCATTTTCTTTG	57.998	29.630	14.97	0.00	36.68	2.77
323	329	9.002600	GTGGATAATTTTCCTTGCATTTTCTTT	57.997	29.630	14.97	0.00	36.68	2.52
382	388	9.877178	AAGATGCTAAAGGTACAGTATATATGC	57.123	33.333	0.00	0.00	0.00	3.14
510	552	5.872617	TCTGACGTTCGTTGGATATTCAATT	59.127	36.000	0.00	0.00	0.00	2.32
523	565	6.253727	GTCATATCTGAAAATCTGACGTTCGT	59.746	38.462	0.00	0.00	31.85	3.85
560	602	9.169468	CGCAGCTAACATAATTTACCATAAAAG	57.831	33.333	0.00	0.00	0.00	2.27
564	606	6.526526	TCCGCAGCTAACATAATTTACCATA	58.473	36.000	0.00	0.00	0.00	2.74
585	627	5.687285	GCTCATTAACTAAATTTGCCATCCG	59.313	40.000	0.00	0.00	0.00	4.18
603	645	6.096423	AGTGATGTGAATTTGCTATGCTCATT	59.904	34.615	0.00	0.00	0.00	2.57
642	684	1.102978	AAATAGTTGACGGGCATGGC	58.897	50.000	11.56	11.56	0.00	4.40
644	686	2.923020	GCAAAAATAGTTGACGGGCATG	59.077	45.455	0.00	0.00	0.00	4.06
645	687	2.094234	GGCAAAAATAGTTGACGGGCAT	60.094	45.455	0.00	0.00	0.00	4.40
649	709	4.414852	CAGATGGCAAAAATAGTTGACGG	58.585	43.478	0.00	0.00	39.58	4.79
659	719	0.602060	TGATGCGCAGATGGCAAAAA	59.398	45.000	18.32	0.00	44.66	1.94
660	720	0.602060	TTGATGCGCAGATGGCAAAA	59.398	45.000	18.32	0.00	44.66	2.44
675	735	6.428159	CGCCTTTCCTAGCAGTTTATATTGAT	59.572	38.462	0.00	0.00	0.00	2.57
686	746	1.808411	TTGAACGCCTTTCCTAGCAG	58.192	50.000	0.00	0.00	32.58	4.24
690	750	2.230266	GGCAAATTGAACGCCTTTCCTA	59.770	45.455	0.00	0.00	42.78	2.94
697	757	1.360931	GGCATGGCAAATTGAACGCC	61.361	55.000	15.47	0.00	46.43	5.68
698	758	0.390209	AGGCATGGCAAATTGAACGC	60.390	50.000	22.64	0.00	0.00	4.84
831	892	1.227089	CTCCATGCCTCCGTCGAAG	60.227	63.158	0.00	0.00	0.00	3.79
916	977	0.389817	TGAACAGCTGTCGCGCTAAT	60.390	50.000	21.95	0.47	42.32	1.73
974	1035	4.424711	GGGATGAAGGTGGCGGCA	62.425	66.667	7.97	7.97	0.00	5.69
987	1048	3.105928	GCCATGGGGTGAGGGGAT	61.106	66.667	15.13	0.00	36.17	3.85
1140	1208	2.258591	CCGATGGGATAGACGGCG	59.741	66.667	4.80	4.80	38.98	6.46
1208	1276	1.134491	CAGAACAGAACCCGGGGATAC	60.134	57.143	27.92	12.78	0.00	2.24
1233	1301	2.428530	AGATCTGCGTATCTGTTCTGCA	59.571	45.455	0.00	0.00	34.87	4.41
1284	1352	1.292061	TTCGTCAGAACCAACCAACG	58.708	50.000	0.00	0.00	0.00	4.10
1292	1360	1.996191	GACTCTGCATTCGTCAGAACC	59.004	52.381	0.00	0.00	39.77	3.62
1293	1361	1.651138	CGACTCTGCATTCGTCAGAAC	59.349	52.381	9.78	0.00	39.77	3.01
1357	1425	2.046009	TTGTGCCGGCTACTTGGACA	62.046	55.000	29.70	18.76	0.00	4.02
1392	1460	3.057033	GCAGTTCATGGAGCAAAAGTCAT	60.057	43.478	0.00	0.00	0.00	3.06
1450	1523	4.407296	AGTTCAGTGGATCCCTATCTTCAC	59.593	45.833	9.90	0.00	32.29	3.18
1543	1620	0.451783	GTAATGCCTGCAGAAACGGG	59.548	55.000	17.39	0.00	39.28	5.28
1598	1675	1.135746	GTGTCGACGTCCAGGAAGTAG	60.136	57.143	8.18	8.64	0.00	2.57
1700	1777	2.540931	GTGCAACTCAAGCAATTTGGTG	59.459	45.455	1.18	0.00	44.64	4.17
1703	1780	1.788308	CCGTGCAACTCAAGCAATTTG	59.212	47.619	0.00	0.00	44.64	2.32
1742	1823	5.444122	CAGAAAGAAAAGCTACGAACTTGG	58.556	41.667	0.00	0.00	0.00	3.61
1750	1831	2.884639	TGGTGGCAGAAAGAAAAGCTAC	59.115	45.455	0.00	0.00	37.69	3.58
1801	1882	7.387948	AGTTGGTACATGCTACTTTTAACAGAG	59.612	37.037	0.00	0.00	39.30	3.35
1802	1883	7.221450	AGTTGGTACATGCTACTTTTAACAGA	58.779	34.615	0.00	0.00	39.30	3.41
1803	1884	7.435068	AGTTGGTACATGCTACTTTTAACAG	57.565	36.000	0.00	0.00	39.30	3.16
1829	1910	9.349713	ACAATCTTAAACTGGAAATGTAAGTCA	57.650	29.630	0.00	0.00	0.00	3.41
1891	1972	6.286758	TGCAAACCAAGCAAGAAAATATCAA	58.713	32.000	0.00	0.00	39.39	2.57
3036	3154	6.449698	ACACGGAATGTAAACCCTATATACG	58.550	40.000	0.00	0.00	40.88	3.06
3941	4073	0.819259	TTGAGGTGCAGCCAGTGTTC	60.819	55.000	13.29	2.77	40.61	3.18
4000	4132	6.417044	CAGGCTCATGTTAATACACTACGTAC	59.583	42.308	0.00	0.00	37.03	3.67
4001	4133	6.319405	TCAGGCTCATGTTAATACACTACGTA	59.681	38.462	0.00	0.00	37.03	3.57
4002	4134	5.126545	TCAGGCTCATGTTAATACACTACGT	59.873	40.000	0.00	0.00	37.03	3.57
4003	4135	5.588240	TCAGGCTCATGTTAATACACTACG	58.412	41.667	0.00	0.00	37.03	3.51
4089	4221	7.337689	TCATTTTGAACAGGAGGAGAATACATG	59.662	37.037	0.00	0.00	0.00	3.21
4247	4379	6.605995	ACATAGTTCAGTATGTGCAGGTAGTA	59.394	38.462	6.51	0.00	41.23	1.82
4266	4398	2.682594	TGCAGGATAGCTCCACATAGT	58.317	47.619	0.00	0.00	44.79	2.12
4271	4403	3.812053	CAGTTAATGCAGGATAGCTCCAC	59.188	47.826	0.00	0.00	44.79	4.02
4388	4532	9.520515	ACCTGCATCTTATTCTTTTTCTTCTTA	57.479	29.630	0.00	0.00	0.00	2.10
4432	4576	1.222115	ACTCGAAACAGCTGAACCGC	61.222	55.000	23.35	3.80	0.00	5.68
4490	4635	0.454957	CAGTGTTAAGCATGCGCCAC	60.455	55.000	13.01	16.33	39.83	5.01
4731	4879	5.074115	TCCTCGGTTTGGTTCACATTATTT	58.926	37.500	0.00	0.00	0.00	1.40
4732	4880	4.658063	TCCTCGGTTTGGTTCACATTATT	58.342	39.130	0.00	0.00	0.00	1.40
4773	4921	9.007901	CCATCATATTTAGAAACATTCTCCCTC	57.992	37.037	0.00	0.00	41.14	4.30
4799	4947	8.365399	TGATTTGTATCTCACCACGAATAATC	57.635	34.615	0.00	0.00	30.51	1.75
4808	4956	4.661222	TGGCTTTGATTTGTATCTCACCA	58.339	39.130	0.00	0.00	0.00	4.17
4854	5002	4.640201	GGCTTTATTTGGATGACAGTAGCA	59.360	41.667	0.00	0.00	0.00	3.49
4876	5025	3.935203	CAGGCATGTTAAGACAGTACAGG	59.065	47.826	0.00	0.00	39.58	4.00

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.