Multiple sequence alignment - TraesCS4D01G091800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G091800 chr4D 100.000 2818 0 0 1 2818 66777672 66780489 0.000000e+00 5204
1 TraesCS4D01G091800 chr4A 91.040 2567 146 41 290 2818 515670733 515673253 0.000000e+00 3389
2 TraesCS4D01G091800 chr4A 90.385 260 9 4 11 269 515670504 515670748 7.530000e-86 327
3 TraesCS4D01G091800 chr4B 93.084 1793 93 18 290 2070 97539563 97541336 0.000000e+00 2595
4 TraesCS4D01G091800 chr4B 87.920 654 50 17 2067 2699 97541777 97542422 0.000000e+00 743
5 TraesCS4D01G091800 chr4B 83.525 261 18 12 11 271 97539345 97539580 1.310000e-53 220


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G091800 chr4D 66777672 66780489 2817 False 5204 5204 100.000000 1 2818 1 chr4D.!!$F1 2817
1 TraesCS4D01G091800 chr4A 515670504 515673253 2749 False 1858 3389 90.712500 11 2818 2 chr4A.!!$F1 2807
2 TraesCS4D01G091800 chr4B 97539345 97542422 3077 False 1186 2595 88.176333 11 2699 3 chr4B.!!$F1 2688

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
196 197 0.036732 GAGCCCACCACATCACTTCA 59.963 55.0 0.0 0.0 0.0 3.02 F
197 198 0.037303 AGCCCACCACATCACTTCAG 59.963 55.0 0.0 0.0 0.0 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1133 1155 1.039785 TCATGGGCACGAGAGAGGAG 61.040 60.000 0.0 0.0 0.00 3.69 R
2081 2561 6.066054 TCAAAAGCATCATGTTTTCGTACA 57.934 33.333 0.0 0.0 29.43 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
82 83 5.932303 CCCTTCTACGGATAACCATTACATG 59.068 44.000 0.00 0.00 35.59 3.21
90 91 5.054477 GGATAACCATTACATGCGTGTACT 58.946 41.667 18.34 10.63 37.04 2.73
91 92 5.050363 GGATAACCATTACATGCGTGTACTG 60.050 44.000 22.93 22.93 39.73 2.74
94 95 3.656651 CATTACATGCGTGTACTGGTG 57.343 47.619 22.41 13.91 40.40 4.17
95 96 2.823924 TTACATGCGTGTACTGGTGT 57.176 45.000 18.34 0.00 40.40 4.16
96 97 3.938289 TTACATGCGTGTACTGGTGTA 57.062 42.857 18.34 0.00 40.40 2.90
97 98 2.074547 ACATGCGTGTACTGGTGTAC 57.925 50.000 10.57 0.00 46.74 2.90
107 108 4.131649 GTACTGGTGTACATGCCACATA 57.868 45.455 15.59 5.64 46.06 2.29
193 194 0.902984 TACGAGCCCACCACATCACT 60.903 55.000 0.00 0.00 0.00 3.41
194 195 1.003355 CGAGCCCACCACATCACTT 60.003 57.895 0.00 0.00 0.00 3.16
195 196 1.021390 CGAGCCCACCACATCACTTC 61.021 60.000 0.00 0.00 0.00 3.01
196 197 0.036732 GAGCCCACCACATCACTTCA 59.963 55.000 0.00 0.00 0.00 3.02
197 198 0.037303 AGCCCACCACATCACTTCAG 59.963 55.000 0.00 0.00 0.00 3.02
198 199 0.250901 GCCCACCACATCACTTCAGT 60.251 55.000 0.00 0.00 0.00 3.41
199 200 1.813513 CCCACCACATCACTTCAGTC 58.186 55.000 0.00 0.00 0.00 3.51
242 244 4.627467 AGCAAGACTTTACAAGAGTATGCG 59.373 41.667 0.00 0.00 41.34 4.73
245 247 6.090358 GCAAGACTTTACAAGAGTATGCGTTA 59.910 38.462 0.00 0.00 33.35 3.18
254 256 6.370593 ACAAGAGTATGCGTTAACATTGTTG 58.629 36.000 12.30 1.15 29.03 3.33
255 257 4.969816 AGAGTATGCGTTAACATTGTTGC 58.030 39.130 12.30 7.72 0.00 4.17
264 266 5.560953 GCGTTAACATTGTTGCTTTCTCTCT 60.561 40.000 12.30 0.00 0.00 3.10
265 267 6.430451 CGTTAACATTGTTGCTTTCTCTCTT 58.570 36.000 12.30 0.00 0.00 2.85
266 268 6.912591 CGTTAACATTGTTGCTTTCTCTCTTT 59.087 34.615 12.30 0.00 0.00 2.52
267 269 8.067784 CGTTAACATTGTTGCTTTCTCTCTTTA 58.932 33.333 12.30 0.00 0.00 1.85
268 270 9.387123 GTTAACATTGTTGCTTTCTCTCTTTAG 57.613 33.333 12.30 0.00 0.00 1.85
269 271 7.573968 AACATTGTTGCTTTCTCTCTTTAGT 57.426 32.000 0.15 0.00 0.00 2.24
270 272 7.573968 ACATTGTTGCTTTCTCTCTTTAGTT 57.426 32.000 0.00 0.00 0.00 2.24
271 273 8.000780 ACATTGTTGCTTTCTCTCTTTAGTTT 57.999 30.769 0.00 0.00 0.00 2.66
272 274 8.470002 ACATTGTTGCTTTCTCTCTTTAGTTTT 58.530 29.630 0.00 0.00 0.00 2.43
273 275 9.305925 CATTGTTGCTTTCTCTCTTTAGTTTTT 57.694 29.630 0.00 0.00 0.00 1.94
349 353 5.045668 TGCTAGCACATGTATGTTTGTTG 57.954 39.130 14.93 0.00 39.39 3.33
375 387 9.124807 GCTAACTAACATTGTTAATTTGTCCAC 57.875 33.333 8.38 0.00 30.72 4.02
386 398 6.073440 TGTTAATTTGTCCACTAGCTCGAAAC 60.073 38.462 0.00 0.00 0.00 2.78
402 414 3.070018 CGAAACAGAAGCCAAGTCATCT 58.930 45.455 0.00 0.00 0.00 2.90
481 494 8.281212 AGATGGCGAAATTAAACTATTTCTGT 57.719 30.769 0.00 0.00 40.65 3.41
488 501 6.811253 AATTAAACTATTTCTGTGACGCCA 57.189 33.333 0.00 0.00 0.00 5.69
538 551 6.709018 AGGAAATAGAGCACTAGAGAAGAC 57.291 41.667 0.00 0.00 31.78 3.01
543 563 6.693315 ATAGAGCACTAGAGAAGACAAGTC 57.307 41.667 0.00 0.00 31.78 3.01
631 651 5.243981 TGCAATTTAATTTGTGTGGATGGG 58.756 37.500 10.80 0.00 0.00 4.00
649 669 4.005487 TGGGCCTCATTTGATTTTTGTG 57.995 40.909 4.53 0.00 0.00 3.33
675 697 2.304092 GAAGCTGCATGGATTCCATCA 58.696 47.619 15.50 14.35 43.15 3.07
690 712 1.673168 CATCAGGGCCTGCTTTACTC 58.327 55.000 29.02 0.00 0.00 2.59
746 768 1.004595 GGATTCCGGACGTGCTTTAC 58.995 55.000 1.83 0.00 0.00 2.01
754 776 4.389687 TCCGGACGTGCTTTACTTAAAATC 59.610 41.667 0.00 0.00 0.00 2.17
828 850 1.603802 CACTATCCGCGGCAATTCAAT 59.396 47.619 23.51 9.61 0.00 2.57
949 971 5.835280 AGCCAGAAAAGAGAGAAATGGAAAA 59.165 36.000 0.00 0.00 0.00 2.29
1012 1034 5.951747 AGCCAGTGGTACATGTAATTTTGAT 59.048 36.000 11.74 0.00 44.52 2.57
1053 1075 7.502060 AATGCTAATAGCTCCACCATAGTAT 57.498 36.000 13.88 0.00 42.97 2.12
1133 1155 0.034616 CATCTAGCCAGCTACCAGCC 59.965 60.000 0.00 0.00 43.77 4.85
1269 1291 3.539593 TTCTCCACGGCCTCCTCCA 62.540 63.158 0.00 0.00 0.00 3.86
2207 2688 1.800032 CAAGAATTGCGCCGCCTAA 59.200 52.632 6.63 0.00 40.39 2.69
2234 2715 3.119990 AGGCGTCAACAATTTGAATACGG 60.120 43.478 17.15 6.11 43.52 4.02
2235 2716 3.168193 GCGTCAACAATTTGAATACGGG 58.832 45.455 17.15 0.17 43.52 5.28
2236 2717 3.753842 CGTCAACAATTTGAATACGGGG 58.246 45.455 2.79 0.00 43.52 5.73
2338 2823 8.894592 AGGAGGATTATTGTACCATATCACATT 58.105 33.333 0.00 0.00 0.00 2.71
2430 2915 4.766375 TCTTCTTTTTCACCACGAAGTCT 58.234 39.130 0.00 0.00 41.61 3.24
2479 2964 8.962679 ACACAATACAAAAGTTCTCCAAAAGTA 58.037 29.630 0.00 0.00 0.00 2.24
2480 2965 9.796120 CACAATACAAAAGTTCTCCAAAAGTAA 57.204 29.630 0.00 0.00 0.00 2.24
2522 3007 0.737019 CCATGAAACACATTGCGGCC 60.737 55.000 0.00 0.00 37.07 6.13
2575 3062 1.895238 CCAATTGCCCCTGCTTCAG 59.105 57.895 0.00 0.00 38.71 3.02
2600 3090 9.654663 AGTGAAGTGAGGAAAATATTGTAGTAC 57.345 33.333 0.00 0.00 0.00 2.73
2606 3096 9.601217 GTGAGGAAAATATTGTAGTACACATCT 57.399 33.333 1.43 0.00 36.90 2.90
2618 3108 8.173542 TGTAGTACACATCTAAGAAGTTGTCA 57.826 34.615 0.00 0.00 34.16 3.58
2624 3114 6.815641 ACACATCTAAGAAGTTGTCATGCTAG 59.184 38.462 0.00 0.00 34.16 3.42
2625 3115 5.814705 ACATCTAAGAAGTTGTCATGCTAGC 59.185 40.000 8.10 8.10 31.35 3.42
2626 3116 5.405935 TCTAAGAAGTTGTCATGCTAGCA 57.594 39.130 21.85 21.85 0.00 3.49
2627 3117 5.793817 TCTAAGAAGTTGTCATGCTAGCAA 58.206 37.500 23.54 2.55 0.00 3.91
2644 3145 4.535526 AGCAAAAACCAGAACAACAACT 57.464 36.364 0.00 0.00 0.00 3.16
2678 3179 2.367241 GAGAAGGGTAGATCAGAAGGGC 59.633 54.545 0.00 0.00 0.00 5.19
2695 3196 1.185315 GGCCATACCTGCAAACACAT 58.815 50.000 0.00 0.00 34.51 3.21
2705 3206 3.291585 CTGCAAACACATCAACGAAGAC 58.708 45.455 0.00 0.00 0.00 3.01
2709 3210 2.795175 ACACATCAACGAAGACGAGT 57.205 45.000 0.00 0.00 42.66 4.18
2711 3212 1.125021 CACATCAACGAAGACGAGTGC 59.875 52.381 0.00 0.00 42.66 4.40
2726 3227 0.904394 AGTGCCGGCCAAATCCAAAT 60.904 50.000 26.77 0.00 0.00 2.32
2737 3238 4.984194 TCCAAATGGATCCGCCTG 57.016 55.556 7.39 3.55 39.78 4.85
2745 3246 1.750193 TGGATCCGCCTGAAATGAAC 58.250 50.000 7.39 0.00 37.63 3.18
2749 3250 1.011968 TCCGCCTGAAATGAACGACG 61.012 55.000 0.00 0.00 0.00 5.12
2751 3252 1.794222 GCCTGAAATGAACGACGGG 59.206 57.895 0.00 0.00 0.00 5.28
2753 3254 0.953471 CCTGAAATGAACGACGGGCA 60.953 55.000 0.00 0.00 0.00 5.36
2782 3283 1.366319 AGATCCACCAAAGACCAGCT 58.634 50.000 0.00 0.00 0.00 4.24
2804 3305 5.461737 GCTTCGATCGAATTCAAGAAGATCT 59.538 40.000 29.22 0.00 37.78 2.75
2805 3306 6.638873 GCTTCGATCGAATTCAAGAAGATCTA 59.361 38.462 29.22 2.99 37.78 1.98
2811 3312 7.742019 TCGAATTCAAGAAGATCTAACGAAG 57.258 36.000 6.22 0.00 0.00 3.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.964464 TGCCTTTCTTTCATTCTTGCCA 59.036 40.909 0.00 0.00 0.00 4.92
1 2 3.582780 CTGCCTTTCTTTCATTCTTGCC 58.417 45.455 0.00 0.00 0.00 4.52
2 3 2.991866 GCTGCCTTTCTTTCATTCTTGC 59.008 45.455 0.00 0.00 0.00 4.01
3 4 3.006110 TGGCTGCCTTTCTTTCATTCTTG 59.994 43.478 21.03 0.00 0.00 3.02
4 5 3.233507 TGGCTGCCTTTCTTTCATTCTT 58.766 40.909 21.03 0.00 0.00 2.52
6 7 2.673326 GCTGGCTGCCTTTCTTTCATTC 60.673 50.000 21.03 0.00 35.15 2.67
7 8 1.274447 GCTGGCTGCCTTTCTTTCATT 59.726 47.619 21.03 0.00 35.15 2.57
8 9 0.893447 GCTGGCTGCCTTTCTTTCAT 59.107 50.000 21.03 0.00 35.15 2.57
9 10 0.178981 AGCTGGCTGCCTTTCTTTCA 60.179 50.000 21.03 0.00 44.23 2.69
90 91 3.540617 GTGATATGTGGCATGTACACCA 58.459 45.455 16.53 0.00 38.05 4.17
91 92 2.878406 GGTGATATGTGGCATGTACACC 59.122 50.000 16.53 14.26 39.38 4.16
92 93 2.878406 GGGTGATATGTGGCATGTACAC 59.122 50.000 13.57 13.57 39.26 2.90
93 94 2.507471 TGGGTGATATGTGGCATGTACA 59.493 45.455 0.00 0.00 0.00 2.90
94 95 2.878406 GTGGGTGATATGTGGCATGTAC 59.122 50.000 0.00 0.00 0.00 2.90
95 96 2.777114 AGTGGGTGATATGTGGCATGTA 59.223 45.455 0.00 0.00 0.00 2.29
96 97 1.565759 AGTGGGTGATATGTGGCATGT 59.434 47.619 0.00 0.00 0.00 3.21
97 98 1.951602 CAGTGGGTGATATGTGGCATG 59.048 52.381 0.00 0.00 0.00 4.06
98 99 1.751733 GCAGTGGGTGATATGTGGCAT 60.752 52.381 0.00 0.00 0.00 4.40
107 108 3.458872 CACGTATGCAGTGGGTGAT 57.541 52.632 0.00 0.00 36.06 3.06
193 194 4.400529 TTGTACAGCACTGAAGACTGAA 57.599 40.909 4.31 0.00 35.38 3.02
194 195 4.607293 ATTGTACAGCACTGAAGACTGA 57.393 40.909 4.31 0.00 35.38 3.41
195 196 4.751600 TCAATTGTACAGCACTGAAGACTG 59.248 41.667 5.13 0.00 37.45 3.51
196 197 4.960938 TCAATTGTACAGCACTGAAGACT 58.039 39.130 5.13 0.00 0.00 3.24
197 198 5.673337 TTCAATTGTACAGCACTGAAGAC 57.327 39.130 5.13 0.47 0.00 3.01
198 199 4.214119 GCTTCAATTGTACAGCACTGAAGA 59.786 41.667 26.17 2.55 35.03 2.87
199 200 4.023792 TGCTTCAATTGTACAGCACTGAAG 60.024 41.667 21.79 21.79 37.35 3.02
242 244 9.387123 CTAAAGAGAGAAAGCAACAATGTTAAC 57.613 33.333 0.00 0.00 0.00 2.01
245 247 7.573968 ACTAAAGAGAGAAAGCAACAATGTT 57.426 32.000 0.00 0.00 0.00 2.71
349 353 9.124807 GTGGACAAATTAACAATGTTAGTTAGC 57.875 33.333 13.05 6.83 33.44 3.09
375 387 2.370281 TGGCTTCTGTTTCGAGCTAG 57.630 50.000 0.00 0.00 36.66 3.42
386 398 7.798596 AACATATTAGATGACTTGGCTTCTG 57.201 36.000 0.00 0.00 0.00 3.02
426 439 6.073331 GCTCAATCTGATTAGTAGGTGCAATC 60.073 42.308 1.98 0.00 0.00 2.67
431 444 3.738282 GCGCTCAATCTGATTAGTAGGTG 59.262 47.826 0.00 0.79 0.00 4.00
481 494 2.029470 CAGGCCTTTAATTTTGGCGTCA 60.029 45.455 0.00 0.00 46.97 4.35
488 501 1.342819 TGCACGCAGGCCTTTAATTTT 59.657 42.857 0.00 0.00 0.00 1.82
538 551 0.591236 CCGTGTTGGTTTGCGACTTG 60.591 55.000 0.00 0.00 0.00 3.16
631 651 5.333263 CGTTTCCACAAAAATCAAATGAGGC 60.333 40.000 0.00 0.00 0.00 4.70
649 669 1.098050 ATCCATGCAGCTTCGTTTCC 58.902 50.000 0.00 0.00 0.00 3.13
675 697 1.068121 AACTGAGTAAAGCAGGCCCT 58.932 50.000 0.00 0.00 37.69 5.19
746 768 1.882198 CACGGCAGCACGATTTTAAG 58.118 50.000 9.87 0.00 37.61 1.85
754 776 4.742201 AGTAGGCACGGCAGCACG 62.742 66.667 0.00 0.00 40.31 5.34
795 817 1.001406 GGATAGTGCCTCTGATTCCCG 59.999 57.143 0.00 0.00 0.00 5.14
828 850 2.612972 CCGAAGGCTGCTTAGAAGTTCA 60.613 50.000 5.50 0.00 46.14 3.18
970 992 5.068591 ACTGGCTTATTCGTTTGTCCTTTTT 59.931 36.000 0.00 0.00 0.00 1.94
1012 1034 2.825532 GCATTTGAGGCCCTTCTGTTTA 59.174 45.455 0.00 0.00 0.00 2.01
1053 1075 6.098695 AGGGGCAGATAAATACGTACACTAAA 59.901 38.462 0.00 0.00 0.00 1.85
1133 1155 1.039785 TCATGGGCACGAGAGAGGAG 61.040 60.000 0.00 0.00 0.00 3.69
1900 1935 9.774742 GAATTGAGAATACCATCAAAGTACAAC 57.225 33.333 0.00 0.00 38.80 3.32
2081 2561 6.066054 TCAAAAGCATCATGTTTTCGTACA 57.934 33.333 0.00 0.00 29.43 2.90
2203 2684 5.856455 CAAATTGTTGACGCCTAGTTTTAGG 59.144 40.000 0.00 0.00 42.12 2.69
2207 2688 5.508200 TTCAAATTGTTGACGCCTAGTTT 57.492 34.783 0.00 0.00 43.52 2.66
2234 2715 8.575649 TCTATTGGTTACTTTTGAATTCTCCC 57.424 34.615 7.05 0.00 0.00 4.30
2236 2717 9.922305 CGATCTATTGGTTACTTTTGAATTCTC 57.078 33.333 7.05 0.00 0.00 2.87
2291 2772 6.478129 TCCTAACCACCGAATCAATAAGTTT 58.522 36.000 0.00 0.00 0.00 2.66
2296 2781 4.291792 TCCTCCTAACCACCGAATCAATA 58.708 43.478 0.00 0.00 0.00 1.90
2338 2823 2.552093 AAGCTAGAGGTTGCTCCCTA 57.448 50.000 0.00 0.00 38.75 3.53
2430 2915 6.773200 TGTTGCATATTATTAATGGGTCGGAA 59.227 34.615 0.00 0.00 0.00 4.30
2492 2977 2.358898 GTGTTTCATGGACACAGCTGTT 59.641 45.455 18.94 9.02 45.13 3.16
2500 2985 1.269174 CCGCAATGTGTTTCATGGACA 59.731 47.619 0.00 0.00 36.81 4.02
2571 3058 9.219603 CTACAATATTTTCCTCACTTCACTGAA 57.780 33.333 0.00 0.00 0.00 3.02
2575 3062 9.431887 TGTACTACAATATTTTCCTCACTTCAC 57.568 33.333 0.00 0.00 0.00 3.18
2600 3090 6.238049 GCTAGCATGACAACTTCTTAGATGTG 60.238 42.308 10.63 0.23 37.50 3.21
2606 3096 6.875948 TTTTGCTAGCATGACAACTTCTTA 57.124 33.333 20.13 0.00 0.00 2.10
2614 3104 3.485394 TCTGGTTTTTGCTAGCATGACA 58.515 40.909 20.13 12.29 0.00 3.58
2618 3108 4.099266 TGTTGTTCTGGTTTTTGCTAGCAT 59.901 37.500 20.13 0.00 0.00 3.79
2624 3114 3.993736 ACAGTTGTTGTTCTGGTTTTTGC 59.006 39.130 0.00 0.00 36.31 3.68
2644 3145 1.475280 CCCTTCTCATCGTCGGTAACA 59.525 52.381 0.00 0.00 0.00 2.41
2647 3148 2.171237 TCTACCCTTCTCATCGTCGGTA 59.829 50.000 0.00 0.00 0.00 4.02
2678 3179 3.670359 CGTTGATGTGTTTGCAGGTATGG 60.670 47.826 0.00 0.00 0.00 2.74
2695 3196 1.371267 CGGCACTCGTCTTCGTTGA 60.371 57.895 0.00 0.00 38.33 3.18
2705 3206 3.508840 GGATTTGGCCGGCACTCG 61.509 66.667 30.85 0.00 38.88 4.18
2709 3210 1.595882 CATTTGGATTTGGCCGGCA 59.404 52.632 30.85 12.04 0.00 5.69
2711 3212 2.589494 TCCATTTGGATTTGGCCGG 58.411 52.632 0.00 0.00 39.78 6.13
2726 3227 1.750193 GTTCATTTCAGGCGGATCCA 58.250 50.000 13.41 0.00 37.29 3.41
2730 3231 1.011968 CGTCGTTCATTTCAGGCGGA 61.012 55.000 0.00 0.00 0.00 5.54
2734 3235 0.953471 TGCCCGTCGTTCATTTCAGG 60.953 55.000 0.00 0.00 0.00 3.86
2737 3238 1.327764 GATCTGCCCGTCGTTCATTTC 59.672 52.381 0.00 0.00 0.00 2.17
2745 3246 0.807667 CTTCTTGGATCTGCCCGTCG 60.808 60.000 0.00 0.00 34.97 5.12
2749 3250 1.492176 TGGATCTTCTTGGATCTGCCC 59.508 52.381 0.00 0.00 41.15 5.36
2751 3252 2.092753 TGGTGGATCTTCTTGGATCTGC 60.093 50.000 0.00 0.00 41.15 4.26
2753 3254 4.537688 TCTTTGGTGGATCTTCTTGGATCT 59.462 41.667 0.00 0.00 41.15 2.75
2782 3283 7.165977 CGTTAGATCTTCTTGAATTCGATCGAA 59.834 37.037 30.83 30.83 36.50 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.