Multiple sequence alignment - TraesCS4D01G091600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G091600 chr4D 100.000 2342 0 0 1 2342 66565952 66563611 0.000000e+00 4325.0
1 TraesCS4D01G091600 chr4B 92.836 1703 96 15 94 1782 97126623 97124933 0.000000e+00 2446.0
2 TraesCS4D01G091600 chr4B 95.652 322 13 1 1998 2319 12113914 12113594 1.240000e-142 516.0
3 TraesCS4D01G091600 chr4B 95.342 322 14 1 1998 2319 537369737 537369417 5.770000e-141 510.0
4 TraesCS4D01G091600 chr4A 92.844 1621 66 23 119 1715 515559314 515557720 0.000000e+00 2305.0
5 TraesCS4D01G091600 chr4A 95.963 322 12 1 1998 2319 626720606 626720286 2.670000e-144 521.0
6 TraesCS4D01G091600 chr2D 98.447 322 5 0 2001 2322 650960431 650960752 3.380000e-158 568.0
7 TraesCS4D01G091600 chr2D 97.846 325 7 0 1998 2322 558188802 558189126 1.570000e-156 562.0
8 TraesCS4D01G091600 chr2D 98.119 319 6 0 2004 2322 14757744 14757426 7.310000e-155 556.0
9 TraesCS4D01G091600 chr6B 95.963 322 12 1 1998 2319 354954090 354953770 2.670000e-144 521.0
10 TraesCS4D01G091600 chr5B 95.950 321 12 1 1999 2319 487339482 487339801 9.590000e-144 520.0
11 TraesCS4D01G091600 chr7A 95.342 322 13 2 1998 2319 611726543 611726862 5.770000e-141 510.0
12 TraesCS4D01G091600 chr5A 86.957 69 9 0 1756 1824 599209962 599210030 6.940000e-11 78.7
13 TraesCS4D01G091600 chr5D 100.000 28 0 0 2315 2342 38291664 38291691 4.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G091600 chr4D 66563611 66565952 2341 True 4325 4325 100.000 1 2342 1 chr4D.!!$R1 2341
1 TraesCS4D01G091600 chr4B 97124933 97126623 1690 True 2446 2446 92.836 94 1782 1 chr4B.!!$R2 1688
2 TraesCS4D01G091600 chr4A 515557720 515559314 1594 True 2305 2305 92.844 119 1715 1 chr4A.!!$R1 1596

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
349 352 0.249155 CAATGCGGAATGACCATGGC 60.249 55.0 13.04 5.35 38.9 4.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2215 2238 0.102481 ATCCACCGGAGAAATCGACG 59.898 55.0 9.46 0.0 34.05 5.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.276397 CAAGGAAAATGTTCACAAAACAAAATC 57.724 29.630 0.00 0.00 35.25 2.17
27 28 8.558973 AGGAAAATGTTCACAAAACAAAATCA 57.441 26.923 0.00 0.00 35.25 2.57
28 29 8.667463 AGGAAAATGTTCACAAAACAAAATCAG 58.333 29.630 0.00 0.00 35.25 2.90
29 30 7.429051 GGAAAATGTTCACAAAACAAAATCAGC 59.571 33.333 0.00 0.00 35.25 4.26
30 31 6.981762 AATGTTCACAAAACAAAATCAGCA 57.018 29.167 0.00 0.00 33.42 4.41
31 32 6.981762 ATGTTCACAAAACAAAATCAGCAA 57.018 29.167 0.00 0.00 33.42 3.91
32 33 6.406093 TGTTCACAAAACAAAATCAGCAAG 57.594 33.333 0.00 0.00 0.00 4.01
33 34 6.162079 TGTTCACAAAACAAAATCAGCAAGA 58.838 32.000 0.00 0.00 0.00 3.02
34 35 6.310956 TGTTCACAAAACAAAATCAGCAAGAG 59.689 34.615 0.00 0.00 0.00 2.85
35 36 4.805192 TCACAAAACAAAATCAGCAAGAGC 59.195 37.500 0.00 0.00 42.56 4.09
36 37 4.567558 CACAAAACAAAATCAGCAAGAGCA 59.432 37.500 0.00 0.00 45.49 4.26
37 38 5.235616 CACAAAACAAAATCAGCAAGAGCAT 59.764 36.000 0.00 0.00 45.49 3.79
38 39 5.464389 ACAAAACAAAATCAGCAAGAGCATC 59.536 36.000 0.00 0.00 45.49 3.91
39 40 4.859304 AACAAAATCAGCAAGAGCATCA 57.141 36.364 0.00 0.00 45.49 3.07
40 41 5.401531 AACAAAATCAGCAAGAGCATCAT 57.598 34.783 0.00 0.00 45.49 2.45
41 42 6.519679 AACAAAATCAGCAAGAGCATCATA 57.480 33.333 0.00 0.00 45.49 2.15
42 43 6.710597 ACAAAATCAGCAAGAGCATCATAT 57.289 33.333 0.00 0.00 45.49 1.78
43 44 7.108841 ACAAAATCAGCAAGAGCATCATATT 57.891 32.000 0.00 0.00 45.49 1.28
44 45 8.229253 ACAAAATCAGCAAGAGCATCATATTA 57.771 30.769 0.00 0.00 45.49 0.98
45 46 8.689061 ACAAAATCAGCAAGAGCATCATATTAA 58.311 29.630 0.00 0.00 45.49 1.40
46 47 9.524106 CAAAATCAGCAAGAGCATCATATTAAA 57.476 29.630 0.00 0.00 45.49 1.52
49 50 9.745880 AATCAGCAAGAGCATCATATTAAAAAG 57.254 29.630 0.00 0.00 45.49 2.27
50 51 8.510243 TCAGCAAGAGCATCATATTAAAAAGA 57.490 30.769 0.00 0.00 45.49 2.52
51 52 8.959548 TCAGCAAGAGCATCATATTAAAAAGAA 58.040 29.630 0.00 0.00 45.49 2.52
52 53 9.577110 CAGCAAGAGCATCATATTAAAAAGAAA 57.423 29.630 0.00 0.00 45.49 2.52
72 73 9.612066 AAAGAAAAATGTAAAATCAAGGAAGCA 57.388 25.926 0.00 0.00 0.00 3.91
73 74 9.783081 AAGAAAAATGTAAAATCAAGGAAGCAT 57.217 25.926 0.00 0.00 0.00 3.79
74 75 9.428097 AGAAAAATGTAAAATCAAGGAAGCATC 57.572 29.630 0.00 0.00 0.00 3.91
75 76 9.206870 GAAAAATGTAAAATCAAGGAAGCATCA 57.793 29.630 0.00 0.00 0.00 3.07
76 77 8.538409 AAAATGTAAAATCAAGGAAGCATCAC 57.462 30.769 0.00 0.00 0.00 3.06
77 78 7.472334 AATGTAAAATCAAGGAAGCATCACT 57.528 32.000 0.00 0.00 0.00 3.41
78 79 6.500684 TGTAAAATCAAGGAAGCATCACTC 57.499 37.500 0.00 0.00 0.00 3.51
79 80 6.240894 TGTAAAATCAAGGAAGCATCACTCT 58.759 36.000 0.00 0.00 0.00 3.24
80 81 5.893897 AAAATCAAGGAAGCATCACTCTC 57.106 39.130 0.00 0.00 0.00 3.20
81 82 4.564782 AATCAAGGAAGCATCACTCTCA 57.435 40.909 0.00 0.00 0.00 3.27
82 83 4.774660 ATCAAGGAAGCATCACTCTCAT 57.225 40.909 0.00 0.00 0.00 2.90
83 84 4.564782 TCAAGGAAGCATCACTCTCATT 57.435 40.909 0.00 0.00 0.00 2.57
84 85 4.511527 TCAAGGAAGCATCACTCTCATTC 58.488 43.478 0.00 0.00 0.00 2.67
85 86 3.176552 AGGAAGCATCACTCTCATTCG 57.823 47.619 0.00 0.00 0.00 3.34
86 87 1.596727 GGAAGCATCACTCTCATTCGC 59.403 52.381 0.00 0.00 0.00 4.70
87 88 2.274437 GAAGCATCACTCTCATTCGCA 58.726 47.619 0.00 0.00 0.00 5.10
88 89 2.391616 AGCATCACTCTCATTCGCAA 57.608 45.000 0.00 0.00 0.00 4.85
89 90 2.703416 AGCATCACTCTCATTCGCAAA 58.297 42.857 0.00 0.00 0.00 3.68
90 91 2.676839 AGCATCACTCTCATTCGCAAAG 59.323 45.455 0.00 0.00 0.00 2.77
91 92 2.674852 GCATCACTCTCATTCGCAAAGA 59.325 45.455 0.00 0.00 0.00 2.52
92 93 3.125829 GCATCACTCTCATTCGCAAAGAA 59.874 43.478 0.00 0.00 43.93 2.52
102 103 4.022068 TCATTCGCAAAGAAAAGGAAGCAT 60.022 37.500 0.00 0.00 42.91 3.79
109 110 5.458891 CAAAGAAAAGGAAGCATCACTCTG 58.541 41.667 0.00 0.00 0.00 3.35
115 116 0.445436 GAAGCATCACTCTGGCAACG 59.555 55.000 0.00 0.00 42.51 4.10
166 167 4.078571 ACCTCCTACTCCATGTTCTCCATA 60.079 45.833 0.00 0.00 30.71 2.74
337 340 5.530915 TGAGGATTAAGAAATACCAATGCGG 59.469 40.000 0.00 0.00 42.50 5.69
349 352 0.249155 CAATGCGGAATGACCATGGC 60.249 55.000 13.04 5.35 38.90 4.40
394 397 5.010213 CCAAAGAACTAATCGTCCCCAAAAA 59.990 40.000 0.00 0.00 0.00 1.94
453 461 4.921470 AATCCGACTGTCAAACAATACG 57.079 40.909 8.73 0.00 0.00 3.06
550 559 3.076621 TCATTCTTTGATGAACTGCGCT 58.923 40.909 9.73 0.00 33.31 5.92
707 722 6.687081 TTTGTTTTGTCTCTGTTCCGTTAT 57.313 33.333 0.00 0.00 0.00 1.89
708 723 5.666969 TGTTTTGTCTCTGTTCCGTTATG 57.333 39.130 0.00 0.00 0.00 1.90
709 724 4.024387 TGTTTTGTCTCTGTTCCGTTATGC 60.024 41.667 0.00 0.00 0.00 3.14
710 725 3.678056 TTGTCTCTGTTCCGTTATGCT 57.322 42.857 0.00 0.00 0.00 3.79
713 728 3.745975 TGTCTCTGTTCCGTTATGCTTTG 59.254 43.478 0.00 0.00 0.00 2.77
714 729 3.994392 GTCTCTGTTCCGTTATGCTTTGA 59.006 43.478 0.00 0.00 0.00 2.69
715 730 4.631813 GTCTCTGTTCCGTTATGCTTTGAT 59.368 41.667 0.00 0.00 0.00 2.57
716 731 5.810587 GTCTCTGTTCCGTTATGCTTTGATA 59.189 40.000 0.00 0.00 0.00 2.15
933 955 4.086706 AGAAAACGATGGTCTCCTTTGT 57.913 40.909 0.00 0.00 0.00 2.83
1046 1068 4.953868 TCGGTCGGCGTGTGTTGG 62.954 66.667 6.85 0.00 0.00 3.77
1078 1100 3.525545 GCCTCCTCCCGGTCGTAC 61.526 72.222 0.00 0.00 0.00 3.67
1177 1199 0.398318 GATGATGACTAGGGGTGGCC 59.602 60.000 0.00 0.00 0.00 5.36
1448 1470 2.938086 TAGCAAGGCGCCGAGAACA 61.938 57.895 23.20 2.83 44.04 3.18
1469 1491 4.220821 ACATCGTCTCCTGATTAGTTGTGT 59.779 41.667 0.00 0.00 0.00 3.72
1473 1495 4.386049 CGTCTCCTGATTAGTTGTGTTCAC 59.614 45.833 0.00 0.00 0.00 3.18
1475 1497 3.064207 TCCTGATTAGTTGTGTTCACGC 58.936 45.455 0.00 0.00 0.00 5.34
1547 1569 5.378230 TTCATCTCAGCCCATGTATCTTT 57.622 39.130 0.00 0.00 0.00 2.52
1549 1571 3.845781 TCTCAGCCCATGTATCTTTCC 57.154 47.619 0.00 0.00 0.00 3.13
1550 1572 3.114606 TCTCAGCCCATGTATCTTTCCA 58.885 45.455 0.00 0.00 0.00 3.53
1551 1573 3.118261 TCTCAGCCCATGTATCTTTCCAC 60.118 47.826 0.00 0.00 0.00 4.02
1553 1575 3.266772 TCAGCCCATGTATCTTTCCACTT 59.733 43.478 0.00 0.00 0.00 3.16
1554 1576 3.379372 CAGCCCATGTATCTTTCCACTTG 59.621 47.826 0.00 0.00 0.00 3.16
1585 1607 2.278854 AGTTAGCGAGTCCGTCTACTC 58.721 52.381 0.00 0.00 42.09 2.59
1633 1655 6.169094 ACTCTGACAAATGAGACCATACAAG 58.831 40.000 0.00 0.00 34.65 3.16
1634 1656 6.114187 TCTGACAAATGAGACCATACAAGT 57.886 37.500 0.00 0.00 31.59 3.16
1642 1664 6.560253 ATGAGACCATACAAGTTGAACAAC 57.440 37.500 10.54 9.33 41.45 3.32
1676 1698 1.225855 CTGTGCTTTTGGTCGTGCTA 58.774 50.000 0.00 0.00 0.00 3.49
1688 1710 0.828022 TCGTGCTAAATCCCCGTCAT 59.172 50.000 0.00 0.00 0.00 3.06
1697 1719 1.414158 ATCCCCGTCATCGATCTTGT 58.586 50.000 0.00 0.00 39.71 3.16
1716 1739 2.299582 TGTTCCCGGTCGTCAGAATTAA 59.700 45.455 0.00 0.00 0.00 1.40
1719 1742 2.498481 TCCCGGTCGTCAGAATTAATGT 59.502 45.455 0.00 0.00 0.00 2.71
1743 1766 2.436469 ATGAGTGCAATGCCGCGA 60.436 55.556 8.23 0.00 33.35 5.87
1745 1768 3.422303 GAGTGCAATGCCGCGACA 61.422 61.111 8.23 0.48 33.35 4.35
1746 1769 2.965147 GAGTGCAATGCCGCGACAA 61.965 57.895 8.23 0.00 33.35 3.18
1765 1788 5.310451 GACAATGAACTAGGGGTGTGTTTA 58.690 41.667 0.00 0.00 0.00 2.01
1770 1793 5.127491 TGAACTAGGGGTGTGTTTAGTTTG 58.873 41.667 0.00 0.00 36.70 2.93
1772 1795 2.375014 AGGGGTGTGTTTAGTTTGGG 57.625 50.000 0.00 0.00 0.00 4.12
1773 1796 1.854280 AGGGGTGTGTTTAGTTTGGGA 59.146 47.619 0.00 0.00 0.00 4.37
1775 1798 3.116900 AGGGGTGTGTTTAGTTTGGGAAT 60.117 43.478 0.00 0.00 0.00 3.01
1776 1799 4.106663 AGGGGTGTGTTTAGTTTGGGAATA 59.893 41.667 0.00 0.00 0.00 1.75
1777 1800 4.833938 GGGGTGTGTTTAGTTTGGGAATAA 59.166 41.667 0.00 0.00 0.00 1.40
1779 1802 6.452242 GGGTGTGTTTAGTTTGGGAATAAAG 58.548 40.000 0.00 0.00 0.00 1.85
1780 1803 6.041182 GGGTGTGTTTAGTTTGGGAATAAAGT 59.959 38.462 0.00 0.00 0.00 2.66
1781 1804 6.921307 GGTGTGTTTAGTTTGGGAATAAAGTG 59.079 38.462 0.00 0.00 0.00 3.16
1782 1805 7.201839 GGTGTGTTTAGTTTGGGAATAAAGTGA 60.202 37.037 0.00 0.00 0.00 3.41
1783 1806 8.192110 GTGTGTTTAGTTTGGGAATAAAGTGAA 58.808 33.333 0.00 0.00 0.00 3.18
1784 1807 8.750298 TGTGTTTAGTTTGGGAATAAAGTGAAA 58.250 29.630 0.00 0.00 0.00 2.69
1785 1808 9.758651 GTGTTTAGTTTGGGAATAAAGTGAAAT 57.241 29.630 0.00 0.00 0.00 2.17
1786 1809 9.757227 TGTTTAGTTTGGGAATAAAGTGAAATG 57.243 29.630 0.00 0.00 0.00 2.32
1787 1810 9.974980 GTTTAGTTTGGGAATAAAGTGAAATGA 57.025 29.630 0.00 0.00 0.00 2.57
1791 1814 9.492973 AGTTTGGGAATAAAGTGAAATGAAATG 57.507 29.630 0.00 0.00 0.00 2.32
1792 1815 9.271828 GTTTGGGAATAAAGTGAAATGAAATGT 57.728 29.630 0.00 0.00 0.00 2.71
1793 1816 9.487790 TTTGGGAATAAAGTGAAATGAAATGTC 57.512 29.630 0.00 0.00 0.00 3.06
1794 1817 8.187913 TGGGAATAAAGTGAAATGAAATGTCA 57.812 30.769 0.00 0.00 38.53 3.58
1795 1818 8.814931 TGGGAATAAAGTGAAATGAAATGTCAT 58.185 29.630 0.00 0.00 43.73 3.06
1796 1819 9.090692 GGGAATAAAGTGAAATGAAATGTCATG 57.909 33.333 0.00 0.00 43.73 3.07
1797 1820 9.090692 GGAATAAAGTGAAATGAAATGTCATGG 57.909 33.333 0.00 0.00 43.73 3.66
1798 1821 9.643693 GAATAAAGTGAAATGAAATGTCATGGT 57.356 29.630 0.00 0.00 43.73 3.55
1801 1824 7.951530 AAGTGAAATGAAATGTCATGGTTTC 57.048 32.000 0.00 1.53 43.73 2.78
1802 1825 7.053316 AGTGAAATGAAATGTCATGGTTTCA 57.947 32.000 17.77 17.77 43.73 2.69
1808 1831 5.782047 TGAAATGTCATGGTTTCATTCCAC 58.218 37.500 13.93 7.53 38.88 4.02
1809 1832 5.539574 TGAAATGTCATGGTTTCATTCCACT 59.460 36.000 13.93 0.00 38.88 4.00
1810 1833 5.395682 AATGTCATGGTTTCATTCCACTG 57.604 39.130 0.00 0.00 37.81 3.66
1811 1834 3.156293 TGTCATGGTTTCATTCCACTGG 58.844 45.455 0.00 0.00 37.81 4.00
1812 1835 3.181435 TGTCATGGTTTCATTCCACTGGA 60.181 43.478 0.00 0.00 37.81 3.86
1813 1836 3.826157 GTCATGGTTTCATTCCACTGGAA 59.174 43.478 13.08 13.08 46.39 3.53
1822 1845 1.259609 TTCCACTGGAATACGTCGGT 58.740 50.000 6.39 0.00 36.71 4.69
1823 1846 1.259609 TCCACTGGAATACGTCGGTT 58.740 50.000 0.00 0.00 0.00 4.44
1824 1847 2.445427 TCCACTGGAATACGTCGGTTA 58.555 47.619 0.00 0.00 0.00 2.85
1825 1848 3.025978 TCCACTGGAATACGTCGGTTAT 58.974 45.455 0.00 0.00 0.00 1.89
1826 1849 3.120792 CCACTGGAATACGTCGGTTATG 58.879 50.000 0.00 0.00 0.00 1.90
1827 1850 3.429822 CCACTGGAATACGTCGGTTATGT 60.430 47.826 0.00 0.00 0.00 2.29
1828 1851 4.178540 CACTGGAATACGTCGGTTATGTT 58.821 43.478 0.00 0.00 0.00 2.71
1829 1852 4.266976 CACTGGAATACGTCGGTTATGTTC 59.733 45.833 0.00 0.00 0.00 3.18
1830 1853 4.159135 ACTGGAATACGTCGGTTATGTTCT 59.841 41.667 0.00 0.00 0.00 3.01
1831 1854 4.675510 TGGAATACGTCGGTTATGTTCTC 58.324 43.478 0.00 0.00 0.00 2.87
1832 1855 4.400251 TGGAATACGTCGGTTATGTTCTCT 59.600 41.667 0.00 0.00 0.00 3.10
1833 1856 5.105635 TGGAATACGTCGGTTATGTTCTCTT 60.106 40.000 0.00 0.00 0.00 2.85
1834 1857 6.095300 TGGAATACGTCGGTTATGTTCTCTTA 59.905 38.462 0.00 0.00 0.00 2.10
1835 1858 7.144000 GGAATACGTCGGTTATGTTCTCTTAT 58.856 38.462 0.00 0.00 0.00 1.73
1836 1859 7.650903 GGAATACGTCGGTTATGTTCTCTTATT 59.349 37.037 0.00 0.00 0.00 1.40
1837 1860 8.937634 AATACGTCGGTTATGTTCTCTTATTT 57.062 30.769 0.00 0.00 0.00 1.40
1838 1861 6.642683 ACGTCGGTTATGTTCTCTTATTTG 57.357 37.500 0.00 0.00 0.00 2.32
1839 1862 5.579511 ACGTCGGTTATGTTCTCTTATTTGG 59.420 40.000 0.00 0.00 0.00 3.28
1840 1863 5.579511 CGTCGGTTATGTTCTCTTATTTGGT 59.420 40.000 0.00 0.00 0.00 3.67
1841 1864 6.091713 CGTCGGTTATGTTCTCTTATTTGGTT 59.908 38.462 0.00 0.00 0.00 3.67
1842 1865 7.241376 GTCGGTTATGTTCTCTTATTTGGTTG 58.759 38.462 0.00 0.00 0.00 3.77
1843 1866 6.373216 TCGGTTATGTTCTCTTATTTGGTTGG 59.627 38.462 0.00 0.00 0.00 3.77
1844 1867 6.404293 CGGTTATGTTCTCTTATTTGGTTGGG 60.404 42.308 0.00 0.00 0.00 4.12
1845 1868 6.127451 GGTTATGTTCTCTTATTTGGTTGGGG 60.127 42.308 0.00 0.00 0.00 4.96
1846 1869 4.733077 TGTTCTCTTATTTGGTTGGGGA 57.267 40.909 0.00 0.00 0.00 4.81
1847 1870 5.269554 TGTTCTCTTATTTGGTTGGGGAT 57.730 39.130 0.00 0.00 0.00 3.85
1848 1871 6.395780 TGTTCTCTTATTTGGTTGGGGATA 57.604 37.500 0.00 0.00 0.00 2.59
1849 1872 6.980577 TGTTCTCTTATTTGGTTGGGGATAT 58.019 36.000 0.00 0.00 0.00 1.63
1850 1873 7.418378 TGTTCTCTTATTTGGTTGGGGATATT 58.582 34.615 0.00 0.00 0.00 1.28
1851 1874 7.898636 TGTTCTCTTATTTGGTTGGGGATATTT 59.101 33.333 0.00 0.00 0.00 1.40
1852 1875 7.896383 TCTCTTATTTGGTTGGGGATATTTG 57.104 36.000 0.00 0.00 0.00 2.32
1853 1876 7.647827 TCTCTTATTTGGTTGGGGATATTTGA 58.352 34.615 0.00 0.00 0.00 2.69
1854 1877 8.288812 TCTCTTATTTGGTTGGGGATATTTGAT 58.711 33.333 0.00 0.00 0.00 2.57
1855 1878 8.248904 TCTTATTTGGTTGGGGATATTTGATG 57.751 34.615 0.00 0.00 0.00 3.07
1856 1879 5.892524 ATTTGGTTGGGGATATTTGATGG 57.107 39.130 0.00 0.00 0.00 3.51
1857 1880 4.616671 TTGGTTGGGGATATTTGATGGA 57.383 40.909 0.00 0.00 0.00 3.41
1858 1881 4.616671 TGGTTGGGGATATTTGATGGAA 57.383 40.909 0.00 0.00 0.00 3.53
1859 1882 5.155035 TGGTTGGGGATATTTGATGGAAT 57.845 39.130 0.00 0.00 0.00 3.01
1860 1883 5.536951 TGGTTGGGGATATTTGATGGAATT 58.463 37.500 0.00 0.00 0.00 2.17
1861 1884 5.366186 TGGTTGGGGATATTTGATGGAATTG 59.634 40.000 0.00 0.00 0.00 2.32
1862 1885 5.602145 GGTTGGGGATATTTGATGGAATTGA 59.398 40.000 0.00 0.00 0.00 2.57
1863 1886 6.239402 GGTTGGGGATATTTGATGGAATTGAG 60.239 42.308 0.00 0.00 0.00 3.02
1864 1887 6.029492 TGGGGATATTTGATGGAATTGAGT 57.971 37.500 0.00 0.00 0.00 3.41
1865 1888 5.834742 TGGGGATATTTGATGGAATTGAGTG 59.165 40.000 0.00 0.00 0.00 3.51
1866 1889 5.244626 GGGGATATTTGATGGAATTGAGTGG 59.755 44.000 0.00 0.00 0.00 4.00
1867 1890 5.835280 GGGATATTTGATGGAATTGAGTGGT 59.165 40.000 0.00 0.00 0.00 4.16
1868 1891 6.239120 GGGATATTTGATGGAATTGAGTGGTG 60.239 42.308 0.00 0.00 0.00 4.17
1869 1892 6.547141 GGATATTTGATGGAATTGAGTGGTGA 59.453 38.462 0.00 0.00 0.00 4.02
1870 1893 7.232127 GGATATTTGATGGAATTGAGTGGTGAT 59.768 37.037 0.00 0.00 0.00 3.06
1871 1894 5.648178 TTTGATGGAATTGAGTGGTGATG 57.352 39.130 0.00 0.00 0.00 3.07
1872 1895 4.305539 TGATGGAATTGAGTGGTGATGT 57.694 40.909 0.00 0.00 0.00 3.06
1873 1896 4.665451 TGATGGAATTGAGTGGTGATGTT 58.335 39.130 0.00 0.00 0.00 2.71
1874 1897 4.701651 TGATGGAATTGAGTGGTGATGTTC 59.298 41.667 0.00 0.00 0.00 3.18
1875 1898 3.073678 TGGAATTGAGTGGTGATGTTCG 58.926 45.455 0.00 0.00 0.00 3.95
1876 1899 2.420022 GGAATTGAGTGGTGATGTTCGG 59.580 50.000 0.00 0.00 0.00 4.30
1877 1900 2.859165 ATTGAGTGGTGATGTTCGGT 57.141 45.000 0.00 0.00 0.00 4.69
1878 1901 1.877637 TTGAGTGGTGATGTTCGGTG 58.122 50.000 0.00 0.00 0.00 4.94
1879 1902 0.756294 TGAGTGGTGATGTTCGGTGT 59.244 50.000 0.00 0.00 0.00 4.16
1880 1903 1.140052 TGAGTGGTGATGTTCGGTGTT 59.860 47.619 0.00 0.00 0.00 3.32
1881 1904 2.218603 GAGTGGTGATGTTCGGTGTTT 58.781 47.619 0.00 0.00 0.00 2.83
1882 1905 1.946768 AGTGGTGATGTTCGGTGTTTG 59.053 47.619 0.00 0.00 0.00 2.93
1883 1906 1.001815 GTGGTGATGTTCGGTGTTTGG 60.002 52.381 0.00 0.00 0.00 3.28
1884 1907 1.314730 GGTGATGTTCGGTGTTTGGT 58.685 50.000 0.00 0.00 0.00 3.67
1885 1908 1.679153 GGTGATGTTCGGTGTTTGGTT 59.321 47.619 0.00 0.00 0.00 3.67
1886 1909 2.287368 GGTGATGTTCGGTGTTTGGTTC 60.287 50.000 0.00 0.00 0.00 3.62
1887 1910 1.950909 TGATGTTCGGTGTTTGGTTCC 59.049 47.619 0.00 0.00 0.00 3.62
1888 1911 1.950909 GATGTTCGGTGTTTGGTTCCA 59.049 47.619 0.00 0.00 0.00 3.53
1889 1912 1.384525 TGTTCGGTGTTTGGTTCCAG 58.615 50.000 0.00 0.00 0.00 3.86
1890 1913 0.666374 GTTCGGTGTTTGGTTCCAGG 59.334 55.000 0.00 0.00 0.00 4.45
1891 1914 0.466555 TTCGGTGTTTGGTTCCAGGG 60.467 55.000 0.00 0.00 0.00 4.45
1892 1915 1.149627 CGGTGTTTGGTTCCAGGGA 59.850 57.895 0.00 0.00 0.00 4.20
1893 1916 0.251165 CGGTGTTTGGTTCCAGGGAT 60.251 55.000 0.00 0.00 0.00 3.85
1894 1917 1.256812 GGTGTTTGGTTCCAGGGATG 58.743 55.000 0.00 0.00 0.00 3.51
1895 1918 1.256812 GTGTTTGGTTCCAGGGATGG 58.743 55.000 0.00 0.00 0.00 3.51
1896 1919 1.153539 TGTTTGGTTCCAGGGATGGA 58.846 50.000 0.00 0.00 35.93 3.41
1897 1920 1.501170 TGTTTGGTTCCAGGGATGGAA 59.499 47.619 5.62 5.62 44.90 3.53
1904 1927 3.317455 TTCCAGGGATGGAATGGAATG 57.683 47.619 5.62 0.00 45.76 2.67
1905 1928 1.500303 TCCAGGGATGGAATGGAATGG 59.500 52.381 0.00 0.00 40.13 3.16
1906 1929 1.500303 CCAGGGATGGAATGGAATGGA 59.500 52.381 0.00 0.00 36.09 3.41
1907 1930 2.091166 CCAGGGATGGAATGGAATGGAA 60.091 50.000 0.00 0.00 36.09 3.53
1908 1931 3.438964 CCAGGGATGGAATGGAATGGAAT 60.439 47.826 0.00 0.00 36.09 3.01
1909 1932 3.576982 CAGGGATGGAATGGAATGGAATG 59.423 47.826 0.00 0.00 0.00 2.67
1910 1933 3.468244 AGGGATGGAATGGAATGGAATGA 59.532 43.478 0.00 0.00 0.00 2.57
1911 1934 4.078454 AGGGATGGAATGGAATGGAATGAA 60.078 41.667 0.00 0.00 0.00 2.57
1912 1935 4.842380 GGGATGGAATGGAATGGAATGAAT 59.158 41.667 0.00 0.00 0.00 2.57
1913 1936 5.308759 GGGATGGAATGGAATGGAATGAATT 59.691 40.000 0.00 0.00 0.00 2.17
1914 1937 6.183361 GGGATGGAATGGAATGGAATGAATTT 60.183 38.462 0.00 0.00 0.00 1.82
1915 1938 6.708949 GGATGGAATGGAATGGAATGAATTTG 59.291 38.462 0.00 0.00 0.00 2.32
1916 1939 5.991861 TGGAATGGAATGGAATGAATTTGG 58.008 37.500 0.00 0.00 0.00 3.28
1917 1940 5.488203 TGGAATGGAATGGAATGAATTTGGT 59.512 36.000 0.00 0.00 0.00 3.67
1918 1941 6.012683 TGGAATGGAATGGAATGAATTTGGTT 60.013 34.615 0.00 0.00 0.00 3.67
1919 1942 6.539826 GGAATGGAATGGAATGAATTTGGTTC 59.460 38.462 0.00 0.00 37.35 3.62
1932 1955 6.973843 TGAATTTGGTTCAACTCATCTCTTG 58.026 36.000 0.00 0.00 43.64 3.02
1933 1956 6.547141 TGAATTTGGTTCAACTCATCTCTTGT 59.453 34.615 0.00 0.00 43.64 3.16
1934 1957 7.719193 TGAATTTGGTTCAACTCATCTCTTGTA 59.281 33.333 0.00 0.00 43.64 2.41
1935 1958 8.641498 AATTTGGTTCAACTCATCTCTTGTAT 57.359 30.769 0.00 0.00 0.00 2.29
1936 1959 9.739276 AATTTGGTTCAACTCATCTCTTGTATA 57.261 29.630 0.00 0.00 0.00 1.47
1937 1960 9.739276 ATTTGGTTCAACTCATCTCTTGTATAA 57.261 29.630 0.00 0.00 0.00 0.98
1938 1961 9.567776 TTTGGTTCAACTCATCTCTTGTATAAA 57.432 29.630 0.00 0.00 0.00 1.40
1939 1962 9.567776 TTGGTTCAACTCATCTCTTGTATAAAA 57.432 29.630 0.00 0.00 0.00 1.52
1940 1963 9.739276 TGGTTCAACTCATCTCTTGTATAAAAT 57.261 29.630 0.00 0.00 0.00 1.82
1941 1964 9.994432 GGTTCAACTCATCTCTTGTATAAAATG 57.006 33.333 0.00 0.00 0.00 2.32
1942 1965 9.994432 GTTCAACTCATCTCTTGTATAAAATGG 57.006 33.333 0.00 0.00 0.00 3.16
1943 1966 9.739276 TTCAACTCATCTCTTGTATAAAATGGT 57.261 29.630 0.00 0.00 0.00 3.55
1947 1970 9.838339 ACTCATCTCTTGTATAAAATGGTAAGG 57.162 33.333 0.00 0.00 0.00 2.69
1948 1971 8.677148 TCATCTCTTGTATAAAATGGTAAGGC 57.323 34.615 0.00 0.00 0.00 4.35
1949 1972 8.494433 TCATCTCTTGTATAAAATGGTAAGGCT 58.506 33.333 0.00 0.00 0.00 4.58
1950 1973 8.562892 CATCTCTTGTATAAAATGGTAAGGCTG 58.437 37.037 0.00 0.00 0.00 4.85
1951 1974 6.542370 TCTCTTGTATAAAATGGTAAGGCTGC 59.458 38.462 0.00 0.00 0.00 5.25
1952 1975 6.184068 TCTTGTATAAAATGGTAAGGCTGCA 58.816 36.000 0.50 0.00 0.00 4.41
1953 1976 6.833416 TCTTGTATAAAATGGTAAGGCTGCAT 59.167 34.615 0.50 0.00 0.00 3.96
1954 1977 7.341769 TCTTGTATAAAATGGTAAGGCTGCATT 59.658 33.333 4.52 4.52 0.00 3.56
1955 1978 8.526667 TTGTATAAAATGGTAAGGCTGCATTA 57.473 30.769 2.18 2.18 0.00 1.90
1956 1979 7.936584 TGTATAAAATGGTAAGGCTGCATTAC 58.063 34.615 24.40 24.40 33.29 1.89
1960 1983 1.968704 GGTAAGGCTGCATTACCCTC 58.031 55.000 34.34 17.27 44.28 4.30
1961 1984 1.583054 GTAAGGCTGCATTACCCTCG 58.417 55.000 22.59 0.00 0.00 4.63
1962 1985 1.138266 GTAAGGCTGCATTACCCTCGA 59.862 52.381 22.59 0.00 0.00 4.04
1963 1986 0.107654 AAGGCTGCATTACCCTCGAC 60.108 55.000 0.00 0.00 0.00 4.20
1964 1987 1.883084 GGCTGCATTACCCTCGACG 60.883 63.158 0.50 0.00 0.00 5.12
1965 1988 1.153628 GCTGCATTACCCTCGACGT 60.154 57.895 0.00 0.00 0.00 4.34
1966 1989 0.739813 GCTGCATTACCCTCGACGTT 60.740 55.000 0.00 0.00 0.00 3.99
1967 1990 1.470285 GCTGCATTACCCTCGACGTTA 60.470 52.381 0.00 0.00 0.00 3.18
1968 1991 2.883574 CTGCATTACCCTCGACGTTAA 58.116 47.619 0.00 0.00 0.00 2.01
1969 1992 3.255725 CTGCATTACCCTCGACGTTAAA 58.744 45.455 0.00 0.00 0.00 1.52
1970 1993 3.864243 TGCATTACCCTCGACGTTAAAT 58.136 40.909 0.00 0.00 0.00 1.40
1971 1994 3.619483 TGCATTACCCTCGACGTTAAATG 59.381 43.478 0.00 1.48 0.00 2.32
1972 1995 3.545426 GCATTACCCTCGACGTTAAATGC 60.545 47.826 14.87 14.87 40.40 3.56
1973 1996 3.316071 TTACCCTCGACGTTAAATGCA 57.684 42.857 0.00 0.00 0.00 3.96
1974 1997 1.435577 ACCCTCGACGTTAAATGCAC 58.564 50.000 0.00 0.00 0.00 4.57
1975 1998 0.725117 CCCTCGACGTTAAATGCACC 59.275 55.000 0.00 0.00 0.00 5.01
1976 1999 0.368907 CCTCGACGTTAAATGCACCG 59.631 55.000 0.00 0.00 0.00 4.94
1977 2000 0.247145 CTCGACGTTAAATGCACCGC 60.247 55.000 0.00 0.00 0.00 5.68
1978 2001 0.944788 TCGACGTTAAATGCACCGCA 60.945 50.000 0.00 0.00 44.86 5.69
1979 2002 0.110599 CGACGTTAAATGCACCGCAA 60.111 50.000 0.00 0.00 43.62 4.85
1980 2003 1.323791 GACGTTAAATGCACCGCAAC 58.676 50.000 0.00 0.00 43.62 4.17
1981 2004 0.948678 ACGTTAAATGCACCGCAACT 59.051 45.000 0.00 0.00 43.62 3.16
1982 2005 1.326576 CGTTAAATGCACCGCAACTG 58.673 50.000 0.00 0.00 43.62 3.16
1983 2006 1.069568 CGTTAAATGCACCGCAACTGA 60.070 47.619 0.00 0.00 43.62 3.41
1984 2007 2.315901 GTTAAATGCACCGCAACTGAC 58.684 47.619 0.00 0.00 43.62 3.51
1985 2008 0.515127 TAAATGCACCGCAACTGACG 59.485 50.000 0.00 0.00 43.62 4.35
1986 2009 1.444119 AAATGCACCGCAACTGACGT 61.444 50.000 0.00 0.00 43.62 4.34
1987 2010 1.444119 AATGCACCGCAACTGACGTT 61.444 50.000 0.00 0.00 43.62 3.99
1988 2011 0.601576 ATGCACCGCAACTGACGTTA 60.602 50.000 0.00 0.00 43.62 3.18
1989 2012 1.218875 TGCACCGCAACTGACGTTAG 61.219 55.000 5.69 5.69 34.76 2.34
1990 2013 1.897398 GCACCGCAACTGACGTTAGG 61.897 60.000 12.41 0.00 36.65 2.69
1991 2014 0.599204 CACCGCAACTGACGTTAGGT 60.599 55.000 12.41 1.27 41.22 3.08
1992 2015 0.599204 ACCGCAACTGACGTTAGGTG 60.599 55.000 20.28 20.28 39.96 4.00
1993 2016 0.319211 CCGCAACTGACGTTAGGTGA 60.319 55.000 27.73 0.00 37.59 4.02
1994 2017 1.060713 CGCAACTGACGTTAGGTGAG 58.939 55.000 27.73 21.07 37.59 3.51
1995 2018 0.790814 GCAACTGACGTTAGGTGAGC 59.209 55.000 27.73 10.63 37.59 4.26
1996 2019 1.605712 GCAACTGACGTTAGGTGAGCT 60.606 52.381 27.73 0.00 37.59 4.09
1997 2020 2.329379 CAACTGACGTTAGGTGAGCTC 58.671 52.381 19.96 6.82 37.59 4.09
1998 2021 0.889306 ACTGACGTTAGGTGAGCTCC 59.111 55.000 12.15 2.19 32.49 4.70
1999 2022 0.173708 CTGACGTTAGGTGAGCTCCC 59.826 60.000 12.15 12.08 0.00 4.30
2000 2023 1.255667 TGACGTTAGGTGAGCTCCCC 61.256 60.000 12.15 9.67 0.00 4.81
2001 2024 2.280823 GACGTTAGGTGAGCTCCCCG 62.281 65.000 12.15 12.73 0.00 5.73
2002 2025 2.901042 GTTAGGTGAGCTCCCCGG 59.099 66.667 12.15 0.00 0.00 5.73
2003 2026 3.081409 TTAGGTGAGCTCCCCGGC 61.081 66.667 12.15 0.00 0.00 6.13
2004 2027 3.618855 TTAGGTGAGCTCCCCGGCT 62.619 63.158 12.15 0.00 46.11 5.52
2052 2075 4.815108 GCGGCCCCCAAACCCTAG 62.815 72.222 0.00 0.00 0.00 3.02
2053 2076 4.815108 CGGCCCCCAAACCCTAGC 62.815 72.222 0.00 0.00 0.00 3.42
2054 2077 4.458829 GGCCCCCAAACCCTAGCC 62.459 72.222 0.00 0.00 0.00 3.93
2055 2078 4.815108 GCCCCCAAACCCTAGCCG 62.815 72.222 0.00 0.00 0.00 5.52
2056 2079 4.815108 CCCCCAAACCCTAGCCGC 62.815 72.222 0.00 0.00 0.00 6.53
2057 2080 4.815108 CCCCAAACCCTAGCCGCC 62.815 72.222 0.00 0.00 0.00 6.13
2073 2096 4.150454 CCGCCTCCTCTCCTCCCT 62.150 72.222 0.00 0.00 0.00 4.20
2074 2097 2.520741 CGCCTCCTCTCCTCCCTC 60.521 72.222 0.00 0.00 0.00 4.30
2075 2098 2.123033 GCCTCCTCTCCTCCCTCC 60.123 72.222 0.00 0.00 0.00 4.30
2076 2099 3.015332 GCCTCCTCTCCTCCCTCCA 62.015 68.421 0.00 0.00 0.00 3.86
2077 2100 1.232792 CCTCCTCTCCTCCCTCCAG 59.767 68.421 0.00 0.00 0.00 3.86
2078 2101 1.457455 CTCCTCTCCTCCCTCCAGC 60.457 68.421 0.00 0.00 0.00 4.85
2079 2102 2.445654 CCTCTCCTCCCTCCAGCC 60.446 72.222 0.00 0.00 0.00 4.85
2080 2103 2.445654 CTCTCCTCCCTCCAGCCC 60.446 72.222 0.00 0.00 0.00 5.19
2081 2104 4.095400 TCTCCTCCCTCCAGCCCC 62.095 72.222 0.00 0.00 0.00 5.80
2107 2130 4.463879 CGCCACCAGAGGAGCCTG 62.464 72.222 0.00 0.00 0.00 4.85
2108 2131 4.792804 GCCACCAGAGGAGCCTGC 62.793 72.222 0.00 0.00 32.97 4.85
2109 2132 4.106925 CCACCAGAGGAGCCTGCC 62.107 72.222 0.00 0.00 32.97 4.85
2110 2133 4.463879 CACCAGAGGAGCCTGCCG 62.464 72.222 0.00 0.00 32.97 5.69
2135 2158 2.809601 CGCGTCTTCCGGTGAAGG 60.810 66.667 0.00 0.00 46.61 3.46
2136 2159 2.342648 GCGTCTTCCGGTGAAGGT 59.657 61.111 0.00 0.00 46.61 3.50
2137 2160 2.027625 GCGTCTTCCGGTGAAGGTG 61.028 63.158 0.00 0.00 46.61 4.00
2138 2161 1.374252 CGTCTTCCGGTGAAGGTGG 60.374 63.158 0.00 0.00 46.61 4.61
2139 2162 1.671379 GTCTTCCGGTGAAGGTGGC 60.671 63.158 0.00 0.00 46.61 5.01
2140 2163 2.742372 CTTCCGGTGAAGGTGGCG 60.742 66.667 0.00 0.00 43.57 5.69
2141 2164 4.323477 TTCCGGTGAAGGTGGCGG 62.323 66.667 0.00 0.00 0.00 6.13
2148 2171 4.162690 GAAGGTGGCGGCGAGGAT 62.163 66.667 12.98 0.00 0.00 3.24
2149 2172 4.162690 AAGGTGGCGGCGAGGATC 62.163 66.667 12.98 0.00 0.00 3.36
2151 2174 4.899239 GGTGGCGGCGAGGATCTG 62.899 72.222 12.98 0.00 0.00 2.90
2157 2180 3.859414 GGCGAGGATCTGCTGCCT 61.859 66.667 10.28 0.00 42.44 4.75
2158 2181 2.280052 GCGAGGATCTGCTGCCTC 60.280 66.667 0.00 0.00 45.73 4.70
2160 2183 2.280052 GAGGATCTGCTGCCTCGC 60.280 66.667 0.00 0.00 41.10 5.03
2161 2184 4.218578 AGGATCTGCTGCCTCGCG 62.219 66.667 0.00 0.00 0.00 5.87
2177 2200 4.749310 CGCCAGCGTGAGGAGCTT 62.749 66.667 3.35 0.00 44.06 3.74
2178 2201 2.359230 GCCAGCGTGAGGAGCTTT 60.359 61.111 0.00 0.00 44.06 3.51
2179 2202 2.684843 GCCAGCGTGAGGAGCTTTG 61.685 63.158 0.00 0.00 44.06 2.77
2180 2203 2.037136 CCAGCGTGAGGAGCTTTGG 61.037 63.158 0.00 0.00 44.06 3.28
2181 2204 1.004560 CAGCGTGAGGAGCTTTGGA 60.005 57.895 0.00 0.00 44.06 3.53
2182 2205 0.603707 CAGCGTGAGGAGCTTTGGAA 60.604 55.000 0.00 0.00 44.06 3.53
2183 2206 0.321122 AGCGTGAGGAGCTTTGGAAG 60.321 55.000 0.00 0.00 43.24 3.46
2192 2215 4.225497 CTTTGGAAGCTAGGGCGG 57.775 61.111 0.00 0.00 44.37 6.13
2193 2216 2.045340 TTTGGAAGCTAGGGCGGC 60.045 61.111 0.00 0.00 44.37 6.53
2194 2217 3.969250 TTTGGAAGCTAGGGCGGCG 62.969 63.158 0.51 0.51 44.37 6.46
2210 2233 4.181010 CGGCCCTGGGTGGAGATG 62.181 72.222 15.56 0.00 38.35 2.90
2211 2234 3.813724 GGCCCTGGGTGGAGATGG 61.814 72.222 15.56 0.00 38.35 3.51
2212 2235 4.512914 GCCCTGGGTGGAGATGGC 62.513 72.222 15.56 0.00 38.35 4.40
2213 2236 4.181010 CCCTGGGTGGAGATGGCG 62.181 72.222 3.97 0.00 38.35 5.69
2214 2237 4.181010 CCTGGGTGGAGATGGCGG 62.181 72.222 0.00 0.00 38.35 6.13
2215 2238 4.864334 CTGGGTGGAGATGGCGGC 62.864 72.222 0.00 0.00 0.00 6.53
2221 2244 4.286320 GGAGATGGCGGCGTCGAT 62.286 66.667 23.66 9.06 39.00 3.59
2222 2245 2.279517 GAGATGGCGGCGTCGATT 60.280 61.111 23.66 8.31 39.00 3.34
2223 2246 1.883084 GAGATGGCGGCGTCGATTT 60.883 57.895 23.66 7.93 39.00 2.17
2224 2247 1.822250 GAGATGGCGGCGTCGATTTC 61.822 60.000 23.66 13.08 39.00 2.17
2225 2248 1.883084 GATGGCGGCGTCGATTTCT 60.883 57.895 16.53 0.00 39.00 2.52
2226 2249 1.822250 GATGGCGGCGTCGATTTCTC 61.822 60.000 16.53 0.00 39.00 2.87
2227 2250 3.262686 GGCGGCGTCGATTTCTCC 61.263 66.667 16.53 0.00 39.00 3.71
2228 2251 3.617538 GCGGCGTCGATTTCTCCG 61.618 66.667 16.53 0.00 42.68 4.63
2229 2252 2.954868 CGGCGTCGATTTCTCCGG 60.955 66.667 1.44 0.00 39.00 5.14
2230 2253 2.183555 GGCGTCGATTTCTCCGGT 59.816 61.111 0.00 0.00 0.00 5.28
2231 2254 2.165301 GGCGTCGATTTCTCCGGTG 61.165 63.158 0.00 0.00 0.00 4.94
2232 2255 2.165301 GCGTCGATTTCTCCGGTGG 61.165 63.158 0.00 0.00 0.00 4.61
2233 2256 1.509463 CGTCGATTTCTCCGGTGGA 59.491 57.895 0.00 0.00 0.00 4.02
2234 2257 0.102481 CGTCGATTTCTCCGGTGGAT 59.898 55.000 0.00 0.00 0.00 3.41
2235 2258 1.571919 GTCGATTTCTCCGGTGGATG 58.428 55.000 0.00 0.00 0.00 3.51
2236 2259 1.136305 GTCGATTTCTCCGGTGGATGA 59.864 52.381 0.00 0.00 0.00 2.92
2237 2260 2.039418 TCGATTTCTCCGGTGGATGAT 58.961 47.619 0.00 0.00 0.00 2.45
2238 2261 2.138320 CGATTTCTCCGGTGGATGATG 58.862 52.381 0.00 0.00 0.00 3.07
2239 2262 1.876156 GATTTCTCCGGTGGATGATGC 59.124 52.381 0.00 0.00 0.00 3.91
2240 2263 0.461870 TTTCTCCGGTGGATGATGCG 60.462 55.000 0.00 0.00 0.00 4.73
2241 2264 2.923426 TTCTCCGGTGGATGATGCGC 62.923 60.000 0.00 0.00 0.00 6.09
2242 2265 4.889856 TCCGGTGGATGATGCGCG 62.890 66.667 0.00 0.00 0.00 6.86
2298 2321 4.821589 GAGGGCGGCGAGGTCTTG 62.822 72.222 12.98 0.00 0.00 3.02
2304 2327 3.123620 GGCGAGGTCTTGCTGCAG 61.124 66.667 10.11 10.11 39.87 4.41
2305 2328 3.797546 GCGAGGTCTTGCTGCAGC 61.798 66.667 31.89 31.89 42.50 5.25
2306 2329 3.485431 CGAGGTCTTGCTGCAGCG 61.485 66.667 32.11 19.83 45.83 5.18
2307 2330 3.123620 GAGGTCTTGCTGCAGCGG 61.124 66.667 32.11 25.93 45.83 5.52
2308 2331 3.890936 GAGGTCTTGCTGCAGCGGT 62.891 63.158 32.11 13.48 45.83 5.68
2309 2332 3.730761 GGTCTTGCTGCAGCGGTG 61.731 66.667 32.11 23.34 45.83 4.94
2310 2333 3.730761 GTCTTGCTGCAGCGGTGG 61.731 66.667 32.11 20.88 45.83 4.61
2323 2346 4.021925 GGTGGGCGGCTCTTCTGT 62.022 66.667 9.56 0.00 0.00 3.41
2324 2347 2.032681 GTGGGCGGCTCTTCTGTT 59.967 61.111 9.56 0.00 0.00 3.16
2325 2348 2.032528 TGGGCGGCTCTTCTGTTG 59.967 61.111 9.56 0.00 0.00 3.33
2326 2349 2.747855 GGGCGGCTCTTCTGTTGG 60.748 66.667 9.56 0.00 0.00 3.77
2327 2350 2.747855 GGCGGCTCTTCTGTTGGG 60.748 66.667 0.00 0.00 0.00 4.12
2328 2351 2.347490 GCGGCTCTTCTGTTGGGA 59.653 61.111 0.00 0.00 0.00 4.37
2329 2352 1.302511 GCGGCTCTTCTGTTGGGAA 60.303 57.895 0.00 0.00 0.00 3.97
2330 2353 0.678048 GCGGCTCTTCTGTTGGGAAT 60.678 55.000 0.00 0.00 0.00 3.01
2331 2354 1.373570 CGGCTCTTCTGTTGGGAATC 58.626 55.000 0.00 0.00 0.00 2.52
2332 2355 1.373570 GGCTCTTCTGTTGGGAATCG 58.626 55.000 0.00 0.00 0.00 3.34
2333 2356 1.339151 GGCTCTTCTGTTGGGAATCGT 60.339 52.381 0.00 0.00 0.00 3.73
2334 2357 2.093658 GGCTCTTCTGTTGGGAATCGTA 60.094 50.000 0.00 0.00 0.00 3.43
2335 2358 3.190874 GCTCTTCTGTTGGGAATCGTAG 58.809 50.000 0.00 0.00 0.00 3.51
2336 2359 3.190874 CTCTTCTGTTGGGAATCGTAGC 58.809 50.000 0.00 0.00 0.00 3.58
2337 2360 2.565391 TCTTCTGTTGGGAATCGTAGCA 59.435 45.455 0.00 0.00 0.00 3.49
2338 2361 3.197766 TCTTCTGTTGGGAATCGTAGCAT 59.802 43.478 0.00 0.00 0.00 3.79
2339 2362 4.404394 TCTTCTGTTGGGAATCGTAGCATA 59.596 41.667 0.00 0.00 0.00 3.14
2340 2363 4.746535 TCTGTTGGGAATCGTAGCATAA 57.253 40.909 0.00 0.00 0.00 1.90
2341 2364 5.290493 TCTGTTGGGAATCGTAGCATAAT 57.710 39.130 0.00 0.00 0.00 1.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.276397 GATTTTGTTTTGTGAACATTTTCCTTG 57.724 29.630 0.00 0.00 0.00 3.61
2 3 8.558973 TGATTTTGTTTTGTGAACATTTTCCT 57.441 26.923 0.00 0.00 0.00 3.36
4 5 7.961827 TGCTGATTTTGTTTTGTGAACATTTTC 59.038 29.630 0.00 0.00 0.00 2.29
6 7 7.375106 TGCTGATTTTGTTTTGTGAACATTT 57.625 28.000 0.00 0.00 0.00 2.32
7 8 6.981762 TGCTGATTTTGTTTTGTGAACATT 57.018 29.167 0.00 0.00 0.00 2.71
8 9 6.817641 TCTTGCTGATTTTGTTTTGTGAACAT 59.182 30.769 0.00 0.00 0.00 2.71
9 10 6.162079 TCTTGCTGATTTTGTTTTGTGAACA 58.838 32.000 0.00 0.00 0.00 3.18
10 11 6.645700 TCTTGCTGATTTTGTTTTGTGAAC 57.354 33.333 0.00 0.00 0.00 3.18
11 12 5.291614 GCTCTTGCTGATTTTGTTTTGTGAA 59.708 36.000 0.00 0.00 36.03 3.18
12 13 4.805192 GCTCTTGCTGATTTTGTTTTGTGA 59.195 37.500 0.00 0.00 36.03 3.58
13 14 4.567558 TGCTCTTGCTGATTTTGTTTTGTG 59.432 37.500 0.00 0.00 40.48 3.33
14 15 4.757594 TGCTCTTGCTGATTTTGTTTTGT 58.242 34.783 0.00 0.00 40.48 2.83
15 16 5.464057 TGATGCTCTTGCTGATTTTGTTTTG 59.536 36.000 0.00 0.00 40.48 2.44
16 17 5.603596 TGATGCTCTTGCTGATTTTGTTTT 58.396 33.333 0.00 0.00 40.48 2.43
17 18 5.204409 TGATGCTCTTGCTGATTTTGTTT 57.796 34.783 0.00 0.00 40.48 2.83
18 19 4.859304 TGATGCTCTTGCTGATTTTGTT 57.141 36.364 0.00 0.00 40.48 2.83
19 20 6.710597 ATATGATGCTCTTGCTGATTTTGT 57.289 33.333 0.00 0.00 40.48 2.83
20 21 9.524106 TTTAATATGATGCTCTTGCTGATTTTG 57.476 29.630 0.00 0.00 40.48 2.44
23 24 9.745880 CTTTTTAATATGATGCTCTTGCTGATT 57.254 29.630 0.00 0.00 40.48 2.57
24 25 9.128404 TCTTTTTAATATGATGCTCTTGCTGAT 57.872 29.630 0.00 0.00 40.48 2.90
25 26 8.510243 TCTTTTTAATATGATGCTCTTGCTGA 57.490 30.769 0.00 0.00 40.48 4.26
26 27 9.577110 TTTCTTTTTAATATGATGCTCTTGCTG 57.423 29.630 0.00 0.00 40.48 4.41
46 47 9.612066 TGCTTCCTTGATTTTACATTTTTCTTT 57.388 25.926 0.00 0.00 0.00 2.52
47 48 9.783081 ATGCTTCCTTGATTTTACATTTTTCTT 57.217 25.926 0.00 0.00 0.00 2.52
48 49 9.428097 GATGCTTCCTTGATTTTACATTTTTCT 57.572 29.630 0.00 0.00 0.00 2.52
49 50 9.206870 TGATGCTTCCTTGATTTTACATTTTTC 57.793 29.630 0.00 0.00 0.00 2.29
50 51 8.992073 GTGATGCTTCCTTGATTTTACATTTTT 58.008 29.630 0.00 0.00 0.00 1.94
51 52 8.370182 AGTGATGCTTCCTTGATTTTACATTTT 58.630 29.630 0.00 0.00 0.00 1.82
52 53 7.899973 AGTGATGCTTCCTTGATTTTACATTT 58.100 30.769 0.00 0.00 0.00 2.32
53 54 7.395489 AGAGTGATGCTTCCTTGATTTTACATT 59.605 33.333 0.00 0.00 0.00 2.71
54 55 6.888632 AGAGTGATGCTTCCTTGATTTTACAT 59.111 34.615 0.00 0.00 0.00 2.29
55 56 6.240894 AGAGTGATGCTTCCTTGATTTTACA 58.759 36.000 0.00 0.00 0.00 2.41
56 57 6.372659 TGAGAGTGATGCTTCCTTGATTTTAC 59.627 38.462 0.00 0.00 0.00 2.01
57 58 6.475504 TGAGAGTGATGCTTCCTTGATTTTA 58.524 36.000 0.00 0.00 0.00 1.52
58 59 5.319453 TGAGAGTGATGCTTCCTTGATTTT 58.681 37.500 0.00 0.00 0.00 1.82
59 60 4.914983 TGAGAGTGATGCTTCCTTGATTT 58.085 39.130 0.00 0.00 0.00 2.17
60 61 4.564782 TGAGAGTGATGCTTCCTTGATT 57.435 40.909 0.00 0.00 0.00 2.57
61 62 4.774660 ATGAGAGTGATGCTTCCTTGAT 57.225 40.909 0.00 0.00 0.00 2.57
62 63 4.511527 GAATGAGAGTGATGCTTCCTTGA 58.488 43.478 0.00 0.00 0.00 3.02
63 64 3.309138 CGAATGAGAGTGATGCTTCCTTG 59.691 47.826 0.00 0.00 0.00 3.61
64 65 3.529533 CGAATGAGAGTGATGCTTCCTT 58.470 45.455 0.00 0.00 0.00 3.36
65 66 2.741228 GCGAATGAGAGTGATGCTTCCT 60.741 50.000 0.00 0.00 0.00 3.36
66 67 1.596727 GCGAATGAGAGTGATGCTTCC 59.403 52.381 0.00 0.00 0.00 3.46
67 68 2.274437 TGCGAATGAGAGTGATGCTTC 58.726 47.619 0.00 0.00 0.00 3.86
68 69 2.391616 TGCGAATGAGAGTGATGCTT 57.608 45.000 0.00 0.00 0.00 3.91
69 70 2.391616 TTGCGAATGAGAGTGATGCT 57.608 45.000 0.00 0.00 0.00 3.79
70 71 2.674852 TCTTTGCGAATGAGAGTGATGC 59.325 45.455 0.00 0.00 0.00 3.91
71 72 4.934075 TTCTTTGCGAATGAGAGTGATG 57.066 40.909 0.00 0.00 0.00 3.07
72 73 5.106396 CCTTTTCTTTGCGAATGAGAGTGAT 60.106 40.000 0.00 0.00 0.00 3.06
73 74 4.214119 CCTTTTCTTTGCGAATGAGAGTGA 59.786 41.667 0.00 0.00 0.00 3.41
74 75 4.214119 TCCTTTTCTTTGCGAATGAGAGTG 59.786 41.667 0.00 0.00 0.00 3.51
75 76 4.389374 TCCTTTTCTTTGCGAATGAGAGT 58.611 39.130 0.00 0.00 0.00 3.24
76 77 5.362556 TTCCTTTTCTTTGCGAATGAGAG 57.637 39.130 0.00 0.00 0.00 3.20
77 78 4.320494 GCTTCCTTTTCTTTGCGAATGAGA 60.320 41.667 0.00 0.00 0.00 3.27
78 79 3.916776 GCTTCCTTTTCTTTGCGAATGAG 59.083 43.478 0.00 0.00 0.00 2.90
79 80 3.317711 TGCTTCCTTTTCTTTGCGAATGA 59.682 39.130 0.00 0.00 0.00 2.57
80 81 3.641648 TGCTTCCTTTTCTTTGCGAATG 58.358 40.909 0.00 0.00 0.00 2.67
81 82 4.022068 TGATGCTTCCTTTTCTTTGCGAAT 60.022 37.500 0.00 0.00 0.00 3.34
82 83 3.317711 TGATGCTTCCTTTTCTTTGCGAA 59.682 39.130 0.00 0.00 0.00 4.70
83 84 2.884012 TGATGCTTCCTTTTCTTTGCGA 59.116 40.909 0.00 0.00 0.00 5.10
84 85 2.982470 GTGATGCTTCCTTTTCTTTGCG 59.018 45.455 0.00 0.00 0.00 4.85
85 86 4.022503 AGAGTGATGCTTCCTTTTCTTTGC 60.023 41.667 0.00 0.00 0.00 3.68
86 87 5.458891 CAGAGTGATGCTTCCTTTTCTTTG 58.541 41.667 0.00 0.00 0.00 2.77
87 88 4.522022 CCAGAGTGATGCTTCCTTTTCTTT 59.478 41.667 0.00 0.00 0.00 2.52
88 89 4.077822 CCAGAGTGATGCTTCCTTTTCTT 58.922 43.478 0.00 0.00 0.00 2.52
89 90 3.683802 CCAGAGTGATGCTTCCTTTTCT 58.316 45.455 0.00 0.00 0.00 2.52
90 91 2.163211 GCCAGAGTGATGCTTCCTTTTC 59.837 50.000 0.00 0.00 0.00 2.29
91 92 2.165998 GCCAGAGTGATGCTTCCTTTT 58.834 47.619 0.00 0.00 0.00 2.27
92 93 1.074405 TGCCAGAGTGATGCTTCCTTT 59.926 47.619 0.00 0.00 0.00 3.11
102 103 0.250295 CCTTTCCGTTGCCAGAGTGA 60.250 55.000 0.00 0.00 0.00 3.41
109 110 2.879826 CATGATTTCCTTTCCGTTGCC 58.120 47.619 0.00 0.00 0.00 4.52
142 143 2.432510 GGAGAACATGGAGTAGGAGGTG 59.567 54.545 0.00 0.00 0.00 4.00
166 167 7.341256 GCAATGGATTGGATAGGACATATGATT 59.659 37.037 10.38 0.00 38.21 2.57
262 265 6.181944 CCAAACAAAACAATACGAAGTTTGC 58.818 36.000 0.00 0.00 37.78 3.68
337 340 5.067413 GGATATGATGATGCCATGGTCATTC 59.933 44.000 17.24 13.81 35.33 2.67
349 352 6.350629 TGGTGACTGTAGGATATGATGATG 57.649 41.667 0.00 0.00 0.00 3.07
394 397 7.041721 TCACGTCAGATTTATATCAGCTTGTT 58.958 34.615 0.00 0.00 32.95 2.83
453 461 3.735237 TGACCTCTCAAGACAACAGAC 57.265 47.619 0.00 0.00 0.00 3.51
550 559 8.896744 TGCAAATATGATTTGGTTTGTGAAAAA 58.103 25.926 12.53 0.00 34.82 1.94
707 722 6.946340 TCAGGTTTCACTATCTATCAAAGCA 58.054 36.000 0.00 0.00 0.00 3.91
708 723 7.172361 GGATCAGGTTTCACTATCTATCAAAGC 59.828 40.741 0.00 0.00 0.00 3.51
709 724 8.206867 TGGATCAGGTTTCACTATCTATCAAAG 58.793 37.037 0.00 0.00 0.00 2.77
710 725 8.089625 TGGATCAGGTTTCACTATCTATCAAA 57.910 34.615 0.00 0.00 0.00 2.69
713 728 9.566432 AAAATGGATCAGGTTTCACTATCTATC 57.434 33.333 0.00 0.00 0.00 2.08
714 729 9.566432 GAAAATGGATCAGGTTTCACTATCTAT 57.434 33.333 0.00 0.00 31.66 1.98
715 730 8.772250 AGAAAATGGATCAGGTTTCACTATCTA 58.228 33.333 13.49 0.00 33.37 1.98
716 731 7.637511 AGAAAATGGATCAGGTTTCACTATCT 58.362 34.615 13.49 1.78 33.37 1.98
758 773 6.381994 TCCCGTATTTCTTAGCTCCTTCTAAA 59.618 38.462 0.00 0.00 0.00 1.85
762 777 4.501743 CCTCCCGTATTTCTTAGCTCCTTC 60.502 50.000 0.00 0.00 0.00 3.46
765 780 2.699321 ACCTCCCGTATTTCTTAGCTCC 59.301 50.000 0.00 0.00 0.00 4.70
933 955 1.125093 TTGCTCTGTTTCCTCCGGGA 61.125 55.000 0.00 0.00 40.36 5.14
972 994 2.070399 CTAGAGGGAGGGCGAGGCTA 62.070 65.000 0.00 0.00 0.00 3.93
1212 1234 4.225497 CCATCCGGCTCACTTTCC 57.775 61.111 0.00 0.00 0.00 3.13
1320 1342 0.323725 ACGCTGCCCATGGATTTCTT 60.324 50.000 15.22 0.00 0.00 2.52
1448 1470 5.047306 TGAACACAACTAATCAGGAGACGAT 60.047 40.000 0.00 0.00 0.00 3.73
1469 1491 0.820074 AATCCAACAACCCGCGTGAA 60.820 50.000 4.92 0.00 0.00 3.18
1473 1495 1.374560 TATCAATCCAACAACCCGCG 58.625 50.000 0.00 0.00 0.00 6.46
1475 1497 4.981806 AACATATCAATCCAACAACCCG 57.018 40.909 0.00 0.00 0.00 5.28
1585 1607 5.445069 TGAGAGGAGAAATACTGAGGAGAG 58.555 45.833 0.00 0.00 0.00 3.20
1633 1655 6.264909 CATTTCTTGCTCAAGTTGTTCAAC 57.735 37.500 9.20 7.50 39.38 3.18
1655 1677 1.726865 CACGACCAAAAGCACAGCA 59.273 52.632 0.00 0.00 0.00 4.41
1676 1698 2.170607 ACAAGATCGATGACGGGGATTT 59.829 45.455 0.54 0.00 40.21 2.17
1688 1710 1.246056 ACGACCGGGAACAAGATCGA 61.246 55.000 6.32 0.00 33.88 3.59
1697 1719 3.055675 ACATTAATTCTGACGACCGGGAA 60.056 43.478 6.32 0.00 0.00 3.97
1716 1739 3.819337 GCATTGCACTCATGAGGATACAT 59.181 43.478 26.08 8.92 41.41 2.29
1719 1742 2.807837 CGGCATTGCACTCATGAGGATA 60.808 50.000 26.08 9.10 0.00 2.59
1743 1766 3.876309 AACACACCCCTAGTTCATTGT 57.124 42.857 0.00 0.00 0.00 2.71
1745 1768 5.578157 ACTAAACACACCCCTAGTTCATT 57.422 39.130 0.00 0.00 0.00 2.57
1746 1769 5.578157 AACTAAACACACCCCTAGTTCAT 57.422 39.130 0.00 0.00 30.57 2.57
1765 1788 9.492973 CATTTCATTTCACTTTATTCCCAAACT 57.507 29.630 0.00 0.00 0.00 2.66
1770 1793 9.090692 CATGACATTTCATTTCACTTTATTCCC 57.909 33.333 0.00 0.00 40.79 3.97
1772 1795 9.643693 ACCATGACATTTCATTTCACTTTATTC 57.356 29.630 0.00 0.00 40.79 1.75
1775 1798 9.474920 GAAACCATGACATTTCATTTCACTTTA 57.525 29.630 0.00 0.00 40.79 1.85
1776 1799 7.986320 TGAAACCATGACATTTCATTTCACTTT 59.014 29.630 12.83 0.00 40.79 2.66
1777 1800 7.499292 TGAAACCATGACATTTCATTTCACTT 58.501 30.769 12.83 0.00 40.79 3.16
1785 1808 5.539574 AGTGGAATGAAACCATGACATTTCA 59.460 36.000 16.88 16.88 46.03 2.69
1786 1809 5.865552 CAGTGGAATGAAACCATGACATTTC 59.134 40.000 0.00 2.27 39.69 2.17
1787 1810 5.279607 CCAGTGGAATGAAACCATGACATTT 60.280 40.000 1.68 0.00 39.69 2.32
1788 1811 4.221262 CCAGTGGAATGAAACCATGACATT 59.779 41.667 1.68 0.81 39.69 2.71
1789 1812 3.765511 CCAGTGGAATGAAACCATGACAT 59.234 43.478 1.68 0.00 39.69 3.06
1790 1813 3.156293 CCAGTGGAATGAAACCATGACA 58.844 45.455 1.68 0.00 39.69 3.58
1791 1814 3.420893 TCCAGTGGAATGAAACCATGAC 58.579 45.455 10.20 0.00 39.69 3.06
1792 1815 3.805066 TCCAGTGGAATGAAACCATGA 57.195 42.857 10.20 0.00 39.69 3.07
1803 1826 1.259609 ACCGACGTATTCCAGTGGAA 58.740 50.000 26.54 26.54 46.39 3.53
1804 1827 1.259609 AACCGACGTATTCCAGTGGA 58.740 50.000 8.12 8.12 0.00 4.02
1805 1828 2.945447 TAACCGACGTATTCCAGTGG 57.055 50.000 1.40 1.40 0.00 4.00
1806 1829 3.777478 ACATAACCGACGTATTCCAGTG 58.223 45.455 0.00 0.00 0.00 3.66
1807 1830 4.159135 AGAACATAACCGACGTATTCCAGT 59.841 41.667 0.00 0.00 0.00 4.00
1808 1831 4.679662 AGAACATAACCGACGTATTCCAG 58.320 43.478 0.00 0.00 0.00 3.86
1809 1832 4.400251 AGAGAACATAACCGACGTATTCCA 59.600 41.667 0.00 0.00 0.00 3.53
1810 1833 4.929781 AGAGAACATAACCGACGTATTCC 58.070 43.478 0.00 0.00 0.00 3.01
1811 1834 8.571461 AATAAGAGAACATAACCGACGTATTC 57.429 34.615 0.00 0.00 0.00 1.75
1812 1835 8.814235 CAAATAAGAGAACATAACCGACGTATT 58.186 33.333 0.00 0.00 0.00 1.89
1813 1836 7.437267 CCAAATAAGAGAACATAACCGACGTAT 59.563 37.037 0.00 0.00 0.00 3.06
1814 1837 6.753279 CCAAATAAGAGAACATAACCGACGTA 59.247 38.462 0.00 0.00 0.00 3.57
1815 1838 5.579511 CCAAATAAGAGAACATAACCGACGT 59.420 40.000 0.00 0.00 0.00 4.34
1816 1839 5.579511 ACCAAATAAGAGAACATAACCGACG 59.420 40.000 0.00 0.00 0.00 5.12
1817 1840 6.980051 ACCAAATAAGAGAACATAACCGAC 57.020 37.500 0.00 0.00 0.00 4.79
1818 1841 6.373216 CCAACCAAATAAGAGAACATAACCGA 59.627 38.462 0.00 0.00 0.00 4.69
1819 1842 6.404293 CCCAACCAAATAAGAGAACATAACCG 60.404 42.308 0.00 0.00 0.00 4.44
1820 1843 6.127451 CCCCAACCAAATAAGAGAACATAACC 60.127 42.308 0.00 0.00 0.00 2.85
1821 1844 6.661805 TCCCCAACCAAATAAGAGAACATAAC 59.338 38.462 0.00 0.00 0.00 1.89
1822 1845 6.795590 TCCCCAACCAAATAAGAGAACATAA 58.204 36.000 0.00 0.00 0.00 1.90
1823 1846 6.395780 TCCCCAACCAAATAAGAGAACATA 57.604 37.500 0.00 0.00 0.00 2.29
1824 1847 5.269554 TCCCCAACCAAATAAGAGAACAT 57.730 39.130 0.00 0.00 0.00 2.71
1825 1848 4.733077 TCCCCAACCAAATAAGAGAACA 57.267 40.909 0.00 0.00 0.00 3.18
1826 1849 7.898014 AATATCCCCAACCAAATAAGAGAAC 57.102 36.000 0.00 0.00 0.00 3.01
1827 1850 8.119246 TCAAATATCCCCAACCAAATAAGAGAA 58.881 33.333 0.00 0.00 0.00 2.87
1828 1851 7.647827 TCAAATATCCCCAACCAAATAAGAGA 58.352 34.615 0.00 0.00 0.00 3.10
1829 1852 7.896383 TCAAATATCCCCAACCAAATAAGAG 57.104 36.000 0.00 0.00 0.00 2.85
1830 1853 7.289782 CCATCAAATATCCCCAACCAAATAAGA 59.710 37.037 0.00 0.00 0.00 2.10
1831 1854 7.289782 TCCATCAAATATCCCCAACCAAATAAG 59.710 37.037 0.00 0.00 0.00 1.73
1832 1855 7.135522 TCCATCAAATATCCCCAACCAAATAA 58.864 34.615 0.00 0.00 0.00 1.40
1833 1856 6.687549 TCCATCAAATATCCCCAACCAAATA 58.312 36.000 0.00 0.00 0.00 1.40
1834 1857 5.536951 TCCATCAAATATCCCCAACCAAAT 58.463 37.500 0.00 0.00 0.00 2.32
1835 1858 4.952845 TCCATCAAATATCCCCAACCAAA 58.047 39.130 0.00 0.00 0.00 3.28
1836 1859 4.616671 TCCATCAAATATCCCCAACCAA 57.383 40.909 0.00 0.00 0.00 3.67
1837 1860 4.616671 TTCCATCAAATATCCCCAACCA 57.383 40.909 0.00 0.00 0.00 3.67
1838 1861 5.602145 TCAATTCCATCAAATATCCCCAACC 59.398 40.000 0.00 0.00 0.00 3.77
1839 1862 6.324770 ACTCAATTCCATCAAATATCCCCAAC 59.675 38.462 0.00 0.00 0.00 3.77
1840 1863 6.324512 CACTCAATTCCATCAAATATCCCCAA 59.675 38.462 0.00 0.00 0.00 4.12
1841 1864 5.834742 CACTCAATTCCATCAAATATCCCCA 59.165 40.000 0.00 0.00 0.00 4.96
1842 1865 5.244626 CCACTCAATTCCATCAAATATCCCC 59.755 44.000 0.00 0.00 0.00 4.81
1843 1866 5.835280 ACCACTCAATTCCATCAAATATCCC 59.165 40.000 0.00 0.00 0.00 3.85
1844 1867 6.547141 TCACCACTCAATTCCATCAAATATCC 59.453 38.462 0.00 0.00 0.00 2.59
1845 1868 7.572523 TCACCACTCAATTCCATCAAATATC 57.427 36.000 0.00 0.00 0.00 1.63
1846 1869 7.562454 ACATCACCACTCAATTCCATCAAATAT 59.438 33.333 0.00 0.00 0.00 1.28
1847 1870 6.891361 ACATCACCACTCAATTCCATCAAATA 59.109 34.615 0.00 0.00 0.00 1.40
1848 1871 5.718130 ACATCACCACTCAATTCCATCAAAT 59.282 36.000 0.00 0.00 0.00 2.32
1849 1872 5.078949 ACATCACCACTCAATTCCATCAAA 58.921 37.500 0.00 0.00 0.00 2.69
1850 1873 4.665451 ACATCACCACTCAATTCCATCAA 58.335 39.130 0.00 0.00 0.00 2.57
1851 1874 4.305539 ACATCACCACTCAATTCCATCA 57.694 40.909 0.00 0.00 0.00 3.07
1852 1875 4.201851 CGAACATCACCACTCAATTCCATC 60.202 45.833 0.00 0.00 0.00 3.51
1853 1876 3.691118 CGAACATCACCACTCAATTCCAT 59.309 43.478 0.00 0.00 0.00 3.41
1854 1877 3.073678 CGAACATCACCACTCAATTCCA 58.926 45.455 0.00 0.00 0.00 3.53
1855 1878 2.420022 CCGAACATCACCACTCAATTCC 59.580 50.000 0.00 0.00 0.00 3.01
1856 1879 3.074412 ACCGAACATCACCACTCAATTC 58.926 45.455 0.00 0.00 0.00 2.17
1857 1880 2.813754 CACCGAACATCACCACTCAATT 59.186 45.455 0.00 0.00 0.00 2.32
1858 1881 2.224523 ACACCGAACATCACCACTCAAT 60.225 45.455 0.00 0.00 0.00 2.57
1859 1882 1.140052 ACACCGAACATCACCACTCAA 59.860 47.619 0.00 0.00 0.00 3.02
1860 1883 0.756294 ACACCGAACATCACCACTCA 59.244 50.000 0.00 0.00 0.00 3.41
1861 1884 1.878953 AACACCGAACATCACCACTC 58.121 50.000 0.00 0.00 0.00 3.51
1862 1885 1.946768 CAAACACCGAACATCACCACT 59.053 47.619 0.00 0.00 0.00 4.00
1863 1886 1.001815 CCAAACACCGAACATCACCAC 60.002 52.381 0.00 0.00 0.00 4.16
1864 1887 1.313772 CCAAACACCGAACATCACCA 58.686 50.000 0.00 0.00 0.00 4.17
1865 1888 1.314730 ACCAAACACCGAACATCACC 58.685 50.000 0.00 0.00 0.00 4.02
1866 1889 2.287368 GGAACCAAACACCGAACATCAC 60.287 50.000 0.00 0.00 0.00 3.06
1867 1890 1.950909 GGAACCAAACACCGAACATCA 59.049 47.619 0.00 0.00 0.00 3.07
1868 1891 1.950909 TGGAACCAAACACCGAACATC 59.049 47.619 0.00 0.00 0.00 3.06
1869 1892 1.953686 CTGGAACCAAACACCGAACAT 59.046 47.619 0.00 0.00 0.00 2.71
1870 1893 1.384525 CTGGAACCAAACACCGAACA 58.615 50.000 0.00 0.00 0.00 3.18
1871 1894 0.666374 CCTGGAACCAAACACCGAAC 59.334 55.000 0.00 0.00 0.00 3.95
1872 1895 0.466555 CCCTGGAACCAAACACCGAA 60.467 55.000 0.00 0.00 0.00 4.30
1873 1896 1.149627 CCCTGGAACCAAACACCGA 59.850 57.895 0.00 0.00 0.00 4.69
1874 1897 0.251165 ATCCCTGGAACCAAACACCG 60.251 55.000 0.00 0.00 0.00 4.94
1875 1898 1.256812 CATCCCTGGAACCAAACACC 58.743 55.000 0.00 0.00 0.00 4.16
1876 1899 1.256812 CCATCCCTGGAACCAAACAC 58.743 55.000 0.00 0.00 46.37 3.32
1877 1900 3.763931 CCATCCCTGGAACCAAACA 57.236 52.632 0.00 0.00 46.37 2.83
1886 1909 1.500303 TCCATTCCATTCCATCCCTGG 59.500 52.381 0.00 0.00 44.64 4.45
1887 1910 3.317455 TTCCATTCCATTCCATCCCTG 57.683 47.619 0.00 0.00 0.00 4.45
1888 1911 3.468244 TCATTCCATTCCATTCCATCCCT 59.532 43.478 0.00 0.00 0.00 4.20
1889 1912 3.848303 TCATTCCATTCCATTCCATCCC 58.152 45.455 0.00 0.00 0.00 3.85
1890 1913 6.429521 AATTCATTCCATTCCATTCCATCC 57.570 37.500 0.00 0.00 0.00 3.51
1891 1914 6.708949 CCAAATTCATTCCATTCCATTCCATC 59.291 38.462 0.00 0.00 0.00 3.51
1892 1915 6.159046 ACCAAATTCATTCCATTCCATTCCAT 59.841 34.615 0.00 0.00 0.00 3.41
1893 1916 5.488203 ACCAAATTCATTCCATTCCATTCCA 59.512 36.000 0.00 0.00 0.00 3.53
1894 1917 5.993055 ACCAAATTCATTCCATTCCATTCC 58.007 37.500 0.00 0.00 0.00 3.01
1895 1918 7.104939 TGAACCAAATTCATTCCATTCCATTC 58.895 34.615 0.00 0.00 42.62 2.67
1896 1919 7.018487 TGAACCAAATTCATTCCATTCCATT 57.982 32.000 0.00 0.00 42.62 3.16
1897 1920 6.623979 TGAACCAAATTCATTCCATTCCAT 57.376 33.333 0.00 0.00 42.62 3.41
1898 1921 6.043012 AGTTGAACCAAATTCATTCCATTCCA 59.957 34.615 0.00 0.00 46.80 3.53
1899 1922 6.466812 AGTTGAACCAAATTCATTCCATTCC 58.533 36.000 0.00 0.00 46.80 3.01
1900 1923 7.153985 TGAGTTGAACCAAATTCATTCCATTC 58.846 34.615 0.00 0.00 46.80 2.67
1901 1924 7.065120 TGAGTTGAACCAAATTCATTCCATT 57.935 32.000 0.00 0.00 46.80 3.16
1902 1925 6.669125 TGAGTTGAACCAAATTCATTCCAT 57.331 33.333 0.00 0.00 46.80 3.41
1903 1926 6.494491 AGATGAGTTGAACCAAATTCATTCCA 59.506 34.615 0.00 0.00 46.80 3.53
1904 1927 6.928520 AGATGAGTTGAACCAAATTCATTCC 58.071 36.000 0.00 0.00 46.80 3.01
1905 1928 7.824672 AGAGATGAGTTGAACCAAATTCATTC 58.175 34.615 0.00 0.00 46.80 2.67
1906 1929 7.771927 AGAGATGAGTTGAACCAAATTCATT 57.228 32.000 0.00 0.00 46.80 2.57
1907 1930 7.232127 ACAAGAGATGAGTTGAACCAAATTCAT 59.768 33.333 0.00 0.00 46.80 2.57
1908 1931 6.547141 ACAAGAGATGAGTTGAACCAAATTCA 59.453 34.615 0.00 0.00 45.92 2.57
1909 1932 6.974965 ACAAGAGATGAGTTGAACCAAATTC 58.025 36.000 0.00 0.00 37.88 2.17
1910 1933 6.966534 ACAAGAGATGAGTTGAACCAAATT 57.033 33.333 0.00 0.00 0.00 1.82
1911 1934 9.739276 TTATACAAGAGATGAGTTGAACCAAAT 57.261 29.630 0.00 0.00 0.00 2.32
1912 1935 9.567776 TTTATACAAGAGATGAGTTGAACCAAA 57.432 29.630 0.00 0.00 0.00 3.28
1913 1936 9.567776 TTTTATACAAGAGATGAGTTGAACCAA 57.432 29.630 0.00 0.00 0.00 3.67
1914 1937 9.739276 ATTTTATACAAGAGATGAGTTGAACCA 57.261 29.630 0.00 0.00 0.00 3.67
1915 1938 9.994432 CATTTTATACAAGAGATGAGTTGAACC 57.006 33.333 0.00 0.00 0.00 3.62
1916 1939 9.994432 CCATTTTATACAAGAGATGAGTTGAAC 57.006 33.333 0.00 0.00 0.00 3.18
1917 1940 9.739276 ACCATTTTATACAAGAGATGAGTTGAA 57.261 29.630 0.00 0.00 0.00 2.69
1921 1944 9.838339 CCTTACCATTTTATACAAGAGATGAGT 57.162 33.333 0.00 0.00 0.00 3.41
1922 1945 8.778358 GCCTTACCATTTTATACAAGAGATGAG 58.222 37.037 0.00 0.00 0.00 2.90
1923 1946 8.494433 AGCCTTACCATTTTATACAAGAGATGA 58.506 33.333 0.00 0.00 0.00 2.92
1924 1947 8.562892 CAGCCTTACCATTTTATACAAGAGATG 58.437 37.037 0.00 0.00 0.00 2.90
1925 1948 7.229506 GCAGCCTTACCATTTTATACAAGAGAT 59.770 37.037 0.00 0.00 0.00 2.75
1926 1949 6.542370 GCAGCCTTACCATTTTATACAAGAGA 59.458 38.462 0.00 0.00 0.00 3.10
1927 1950 6.318648 TGCAGCCTTACCATTTTATACAAGAG 59.681 38.462 0.00 0.00 0.00 2.85
1928 1951 6.184068 TGCAGCCTTACCATTTTATACAAGA 58.816 36.000 0.00 0.00 0.00 3.02
1929 1952 6.449635 TGCAGCCTTACCATTTTATACAAG 57.550 37.500 0.00 0.00 0.00 3.16
1930 1953 7.416964 AATGCAGCCTTACCATTTTATACAA 57.583 32.000 0.00 0.00 0.00 2.41
1931 1954 7.013846 GGTAATGCAGCCTTACCATTTTATACA 59.986 37.037 26.51 0.00 44.95 2.29
1932 1955 7.368059 GGTAATGCAGCCTTACCATTTTATAC 58.632 38.462 26.51 4.12 44.95 1.47
1933 1956 6.492087 GGGTAATGCAGCCTTACCATTTTATA 59.508 38.462 30.07 0.00 46.61 0.98
1934 1957 5.304357 GGGTAATGCAGCCTTACCATTTTAT 59.696 40.000 30.07 0.00 46.61 1.40
1935 1958 4.647399 GGGTAATGCAGCCTTACCATTTTA 59.353 41.667 30.07 0.00 46.61 1.52
1936 1959 3.450817 GGGTAATGCAGCCTTACCATTTT 59.549 43.478 30.07 0.00 46.61 1.82
1937 1960 3.031013 GGGTAATGCAGCCTTACCATTT 58.969 45.455 30.07 0.00 46.61 2.32
1938 1961 2.666317 GGGTAATGCAGCCTTACCATT 58.334 47.619 30.07 9.60 46.61 3.16
1939 1962 2.364972 GGGTAATGCAGCCTTACCAT 57.635 50.000 30.07 0.00 46.61 3.55
1940 1963 3.894742 GGGTAATGCAGCCTTACCA 57.105 52.632 30.07 0.00 46.61 3.25
1946 1969 1.883084 CGTCGAGGGTAATGCAGCC 60.883 63.158 0.00 0.00 45.89 4.85
1947 1970 0.739813 AACGTCGAGGGTAATGCAGC 60.740 55.000 10.27 0.00 0.00 5.25
1948 1971 2.572191 TAACGTCGAGGGTAATGCAG 57.428 50.000 10.27 0.00 0.00 4.41
1949 1972 3.316071 TTTAACGTCGAGGGTAATGCA 57.684 42.857 15.72 0.00 0.00 3.96
1950 1973 3.545426 GCATTTAACGTCGAGGGTAATGC 60.545 47.826 24.41 24.41 0.00 3.56
1951 1974 3.619483 TGCATTTAACGTCGAGGGTAATG 59.381 43.478 15.72 16.71 0.00 1.90
1952 1975 3.619929 GTGCATTTAACGTCGAGGGTAAT 59.380 43.478 15.72 6.20 0.00 1.89
1953 1976 2.995258 GTGCATTTAACGTCGAGGGTAA 59.005 45.455 11.40 11.40 0.00 2.85
1954 1977 2.609350 GTGCATTTAACGTCGAGGGTA 58.391 47.619 10.27 4.15 0.00 3.69
1955 1978 1.435577 GTGCATTTAACGTCGAGGGT 58.564 50.000 10.27 5.33 0.00 4.34
1956 1979 0.725117 GGTGCATTTAACGTCGAGGG 59.275 55.000 10.27 0.00 0.00 4.30
1957 1980 0.368907 CGGTGCATTTAACGTCGAGG 59.631 55.000 3.03 3.03 0.00 4.63
1958 1981 0.247145 GCGGTGCATTTAACGTCGAG 60.247 55.000 0.00 0.00 0.00 4.04
1959 1982 0.944788 TGCGGTGCATTTAACGTCGA 60.945 50.000 0.00 0.00 31.71 4.20
1960 1983 0.110599 TTGCGGTGCATTTAACGTCG 60.111 50.000 0.00 0.00 38.76 5.12
1961 1984 1.069500 AGTTGCGGTGCATTTAACGTC 60.069 47.619 0.00 0.00 38.76 4.34
1962 1985 0.948678 AGTTGCGGTGCATTTAACGT 59.051 45.000 0.00 0.00 38.76 3.99
1963 1986 1.069568 TCAGTTGCGGTGCATTTAACG 60.070 47.619 0.00 0.00 38.76 3.18
1964 1987 2.315901 GTCAGTTGCGGTGCATTTAAC 58.684 47.619 0.00 0.00 38.76 2.01
1965 1988 1.069568 CGTCAGTTGCGGTGCATTTAA 60.070 47.619 0.00 0.00 38.76 1.52
1966 1989 0.515127 CGTCAGTTGCGGTGCATTTA 59.485 50.000 0.00 0.00 38.76 1.40
1967 1990 1.282570 CGTCAGTTGCGGTGCATTT 59.717 52.632 0.00 0.00 38.76 2.32
1968 1991 1.444119 AACGTCAGTTGCGGTGCATT 61.444 50.000 0.00 0.00 38.76 3.56
1969 1992 0.601576 TAACGTCAGTTGCGGTGCAT 60.602 50.000 0.00 0.00 41.35 3.96
1970 1993 1.218875 CTAACGTCAGTTGCGGTGCA 61.219 55.000 0.00 0.00 41.35 4.57
1971 1994 1.491563 CTAACGTCAGTTGCGGTGC 59.508 57.895 0.00 0.00 41.35 5.01
1972 1995 0.599204 ACCTAACGTCAGTTGCGGTG 60.599 55.000 0.00 0.00 41.05 4.94
1973 1996 0.599204 CACCTAACGTCAGTTGCGGT 60.599 55.000 0.00 0.00 42.33 5.68
1974 1997 0.319211 TCACCTAACGTCAGTTGCGG 60.319 55.000 0.00 0.00 41.35 5.69
1975 1998 1.060713 CTCACCTAACGTCAGTTGCG 58.939 55.000 0.00 0.00 41.35 4.85
1976 1999 0.790814 GCTCACCTAACGTCAGTTGC 59.209 55.000 0.00 0.00 41.35 4.17
1977 2000 2.329379 GAGCTCACCTAACGTCAGTTG 58.671 52.381 9.40 0.00 41.35 3.16
1978 2001 1.272769 GGAGCTCACCTAACGTCAGTT 59.727 52.381 17.19 0.00 43.95 3.16
1979 2002 0.889306 GGAGCTCACCTAACGTCAGT 59.111 55.000 17.19 0.00 0.00 3.41
1980 2003 0.173708 GGGAGCTCACCTAACGTCAG 59.826 60.000 17.19 0.00 0.00 3.51
1981 2004 1.255667 GGGGAGCTCACCTAACGTCA 61.256 60.000 28.63 0.00 36.20 4.35
1982 2005 1.516423 GGGGAGCTCACCTAACGTC 59.484 63.158 28.63 0.00 36.20 4.34
1983 2006 2.348888 CGGGGAGCTCACCTAACGT 61.349 63.158 31.90 0.00 37.25 3.99
1984 2007 2.494918 CGGGGAGCTCACCTAACG 59.505 66.667 31.90 15.48 37.25 3.18
1985 2008 2.901042 CCGGGGAGCTCACCTAAC 59.099 66.667 31.90 6.67 37.25 2.34
1986 2009 3.081409 GCCGGGGAGCTCACCTAA 61.081 66.667 31.90 0.00 37.25 2.69
1987 2010 4.075793 AGCCGGGGAGCTCACCTA 62.076 66.667 31.90 0.00 39.48 3.08
2035 2058 4.815108 CTAGGGTTTGGGGGCCGC 62.815 72.222 14.65 14.65 0.00 6.53
2036 2059 4.815108 GCTAGGGTTTGGGGGCCG 62.815 72.222 0.00 0.00 0.00 6.13
2037 2060 4.458829 GGCTAGGGTTTGGGGGCC 62.459 72.222 0.00 0.00 0.00 5.80
2038 2061 4.815108 CGGCTAGGGTTTGGGGGC 62.815 72.222 0.00 0.00 0.00 5.80
2039 2062 4.815108 GCGGCTAGGGTTTGGGGG 62.815 72.222 0.00 0.00 0.00 5.40
2040 2063 4.815108 GGCGGCTAGGGTTTGGGG 62.815 72.222 0.00 0.00 0.00 4.96
2056 2079 4.150454 AGGGAGGAGAGGAGGCGG 62.150 72.222 0.00 0.00 0.00 6.13
2057 2080 2.520741 GAGGGAGGAGAGGAGGCG 60.521 72.222 0.00 0.00 0.00 5.52
2058 2081 2.123033 GGAGGGAGGAGAGGAGGC 60.123 72.222 0.00 0.00 0.00 4.70
2059 2082 1.232792 CTGGAGGGAGGAGAGGAGG 59.767 68.421 0.00 0.00 0.00 4.30
2060 2083 1.457455 GCTGGAGGGAGGAGAGGAG 60.457 68.421 0.00 0.00 0.00 3.69
2061 2084 2.693017 GCTGGAGGGAGGAGAGGA 59.307 66.667 0.00 0.00 0.00 3.71
2062 2085 2.445654 GGCTGGAGGGAGGAGAGG 60.446 72.222 0.00 0.00 0.00 3.69
2063 2086 2.445654 GGGCTGGAGGGAGGAGAG 60.446 72.222 0.00 0.00 0.00 3.20
2064 2087 4.095400 GGGGCTGGAGGGAGGAGA 62.095 72.222 0.00 0.00 0.00 3.71
2090 2113 4.463879 CAGGCTCCTCTGGTGGCG 62.464 72.222 6.58 0.00 44.62 5.69
2091 2114 4.792804 GCAGGCTCCTCTGGTGGC 62.793 72.222 4.40 4.40 41.16 5.01
2092 2115 4.106925 GGCAGGCTCCTCTGGTGG 62.107 72.222 0.00 0.00 35.43 4.61
2093 2116 4.463879 CGGCAGGCTCCTCTGGTG 62.464 72.222 0.00 0.00 35.43 4.17
2124 2147 4.323477 CCGCCACCTTCACCGGAA 62.323 66.667 9.46 0.00 43.20 4.30
2131 2154 4.162690 ATCCTCGCCGCCACCTTC 62.163 66.667 0.00 0.00 0.00 3.46
2132 2155 4.162690 GATCCTCGCCGCCACCTT 62.163 66.667 0.00 0.00 0.00 3.50
2134 2157 4.899239 CAGATCCTCGCCGCCACC 62.899 72.222 0.00 0.00 0.00 4.61
2140 2163 3.805891 GAGGCAGCAGATCCTCGCC 62.806 68.421 0.00 5.18 39.43 5.54
2141 2164 2.280052 GAGGCAGCAGATCCTCGC 60.280 66.667 0.00 0.00 39.43 5.03
2143 2166 2.280052 GCGAGGCAGCAGATCCTC 60.280 66.667 0.00 0.00 44.14 3.71
2144 2167 4.218578 CGCGAGGCAGCAGATCCT 62.219 66.667 0.00 0.00 36.85 3.24
2160 2183 4.749310 AAGCTCCTCACGCTGGCG 62.749 66.667 13.56 13.56 46.03 5.69
2161 2184 2.359230 AAAGCTCCTCACGCTGGC 60.359 61.111 0.00 0.00 37.87 4.85
2162 2185 2.037136 CCAAAGCTCCTCACGCTGG 61.037 63.158 0.00 0.00 37.87 4.85
2163 2186 0.603707 TTCCAAAGCTCCTCACGCTG 60.604 55.000 0.00 0.00 37.87 5.18
2164 2187 0.321122 CTTCCAAAGCTCCTCACGCT 60.321 55.000 0.00 0.00 39.94 5.07
2165 2188 2.166270 CTTCCAAAGCTCCTCACGC 58.834 57.895 0.00 0.00 0.00 5.34
2175 2198 2.115291 GCCGCCCTAGCTTCCAAAG 61.115 63.158 0.00 0.00 36.60 2.77
2176 2199 2.045340 GCCGCCCTAGCTTCCAAA 60.045 61.111 0.00 0.00 36.60 3.28
2177 2200 4.467084 CGCCGCCCTAGCTTCCAA 62.467 66.667 0.00 0.00 36.60 3.53
2193 2216 4.181010 CATCTCCACCCAGGGCCG 62.181 72.222 4.91 0.00 38.24 6.13
2194 2217 3.813724 CCATCTCCACCCAGGGCC 61.814 72.222 4.91 0.00 38.24 5.80
2195 2218 4.512914 GCCATCTCCACCCAGGGC 62.513 72.222 4.91 0.00 38.24 5.19
2196 2219 4.181010 CGCCATCTCCACCCAGGG 62.181 72.222 2.85 2.85 38.24 4.45
2197 2220 4.181010 CCGCCATCTCCACCCAGG 62.181 72.222 0.00 0.00 39.47 4.45
2198 2221 4.864334 GCCGCCATCTCCACCCAG 62.864 72.222 0.00 0.00 0.00 4.45
2204 2227 3.792053 AATCGACGCCGCCATCTCC 62.792 63.158 0.00 0.00 35.37 3.71
2205 2228 1.822250 GAAATCGACGCCGCCATCTC 61.822 60.000 0.00 0.00 35.37 2.75
2206 2229 1.883084 GAAATCGACGCCGCCATCT 60.883 57.895 0.00 0.00 35.37 2.90
2207 2230 1.822250 GAGAAATCGACGCCGCCATC 61.822 60.000 0.00 0.00 35.37 3.51
2208 2231 1.883084 GAGAAATCGACGCCGCCAT 60.883 57.895 0.00 0.00 35.37 4.40
2209 2232 2.508439 GAGAAATCGACGCCGCCA 60.508 61.111 0.00 0.00 35.37 5.69
2210 2233 3.262686 GGAGAAATCGACGCCGCC 61.263 66.667 0.00 0.00 35.37 6.13
2211 2234 3.617538 CGGAGAAATCGACGCCGC 61.618 66.667 3.91 0.00 42.63 6.53
2212 2235 2.954868 CCGGAGAAATCGACGCCG 60.955 66.667 9.27 9.27 46.79 6.46
2213 2236 2.165301 CACCGGAGAAATCGACGCC 61.165 63.158 9.46 0.00 0.00 5.68
2214 2237 2.165301 CCACCGGAGAAATCGACGC 61.165 63.158 9.46 0.00 0.00 5.19
2215 2238 0.102481 ATCCACCGGAGAAATCGACG 59.898 55.000 9.46 0.00 34.05 5.12
2216 2239 1.136305 TCATCCACCGGAGAAATCGAC 59.864 52.381 9.46 0.00 34.05 4.20
2217 2240 1.480789 TCATCCACCGGAGAAATCGA 58.519 50.000 9.46 0.00 34.05 3.59
2218 2241 2.138320 CATCATCCACCGGAGAAATCG 58.862 52.381 9.46 0.00 34.05 3.34
2219 2242 1.876156 GCATCATCCACCGGAGAAATC 59.124 52.381 9.46 0.00 34.05 2.17
2220 2243 1.811558 CGCATCATCCACCGGAGAAAT 60.812 52.381 9.46 0.07 34.05 2.17
2221 2244 0.461870 CGCATCATCCACCGGAGAAA 60.462 55.000 9.46 0.00 34.05 2.52
2222 2245 1.143838 CGCATCATCCACCGGAGAA 59.856 57.895 9.46 0.00 34.05 2.87
2223 2246 2.814604 CGCATCATCCACCGGAGA 59.185 61.111 9.46 4.59 34.05 3.71
2224 2247 2.969238 GCGCATCATCCACCGGAG 60.969 66.667 9.46 0.00 34.05 4.63
2225 2248 4.889856 CGCGCATCATCCACCGGA 62.890 66.667 9.46 0.00 35.55 5.14
2281 2304 4.821589 CAAGACCTCGCCGCCCTC 62.822 72.222 0.00 0.00 0.00 4.30
2287 2310 3.123620 CTGCAGCAAGACCTCGCC 61.124 66.667 0.00 0.00 0.00 5.54
2288 2311 3.797546 GCTGCAGCAAGACCTCGC 61.798 66.667 33.36 2.16 41.59 5.03
2289 2312 3.485431 CGCTGCAGCAAGACCTCG 61.485 66.667 36.03 15.08 42.21 4.63
2290 2313 3.123620 CCGCTGCAGCAAGACCTC 61.124 66.667 36.03 6.57 42.21 3.85
2291 2314 3.946201 ACCGCTGCAGCAAGACCT 61.946 61.111 36.03 10.20 42.21 3.85
2292 2315 3.730761 CACCGCTGCAGCAAGACC 61.731 66.667 36.03 8.11 42.21 3.85
2293 2316 3.730761 CCACCGCTGCAGCAAGAC 61.731 66.667 36.03 8.88 42.21 3.01
2306 2329 3.553095 AACAGAAGAGCCGCCCACC 62.553 63.158 0.00 0.00 0.00 4.61
2307 2330 2.032681 AACAGAAGAGCCGCCCAC 59.967 61.111 0.00 0.00 0.00 4.61
2308 2331 2.032528 CAACAGAAGAGCCGCCCA 59.967 61.111 0.00 0.00 0.00 5.36
2309 2332 2.747855 CCAACAGAAGAGCCGCCC 60.748 66.667 0.00 0.00 0.00 6.13
2310 2333 2.747855 CCCAACAGAAGAGCCGCC 60.748 66.667 0.00 0.00 0.00 6.13
2311 2334 0.678048 ATTCCCAACAGAAGAGCCGC 60.678 55.000 0.00 0.00 0.00 6.53
2312 2335 1.373570 GATTCCCAACAGAAGAGCCG 58.626 55.000 0.00 0.00 0.00 5.52
2313 2336 1.339151 ACGATTCCCAACAGAAGAGCC 60.339 52.381 0.00 0.00 0.00 4.70
2314 2337 2.100605 ACGATTCCCAACAGAAGAGC 57.899 50.000 0.00 0.00 0.00 4.09
2315 2338 3.190874 GCTACGATTCCCAACAGAAGAG 58.809 50.000 0.00 0.00 0.00 2.85
2316 2339 2.565391 TGCTACGATTCCCAACAGAAGA 59.435 45.455 0.00 0.00 0.00 2.87
2317 2340 2.972625 TGCTACGATTCCCAACAGAAG 58.027 47.619 0.00 0.00 0.00 2.85
2318 2341 3.627395 ATGCTACGATTCCCAACAGAA 57.373 42.857 0.00 0.00 0.00 3.02
2319 2342 4.746535 TTATGCTACGATTCCCAACAGA 57.253 40.909 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.