Multiple sequence alignment - TraesCS4D01G091400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G091400 chr4D 100.000 8300 0 0 1 8300 66322994 66314695 0.000000e+00 15328.0
1 TraesCS4D01G091400 chr4D 90.683 161 12 3 8057 8214 208562317 208562477 2.350000e-50 211.0
2 TraesCS4D01G091400 chr4D 98.000 50 1 0 3209 3258 391017295 391017344 4.130000e-13 87.9
3 TraesCS4D01G091400 chr4A 96.257 2351 75 9 746 3093 515007297 515004957 0.000000e+00 3842.0
4 TraesCS4D01G091400 chr4A 95.906 2052 57 12 5428 7459 515002742 515000698 0.000000e+00 3299.0
5 TraesCS4D01G091400 chr4A 94.759 1183 50 5 3258 4434 515004759 515003583 0.000000e+00 1831.0
6 TraesCS4D01G091400 chr4A 94.293 806 36 8 4516 5317 515003555 515002756 0.000000e+00 1225.0
7 TraesCS4D01G091400 chr4A 94.805 693 30 5 6543 7233 597816011 597816699 0.000000e+00 1075.0
8 TraesCS4D01G091400 chr4A 90.212 756 33 15 1 748 515008059 515007337 0.000000e+00 948.0
9 TraesCS4D01G091400 chr4A 85.121 578 39 17 7580 8134 515000103 514999550 1.580000e-151 547.0
10 TraesCS4D01G091400 chr4B 95.466 2404 92 10 746 3141 96942204 96939810 0.000000e+00 3819.0
11 TraesCS4D01G091400 chr4B 92.404 2238 105 36 3259 5447 96939632 96937411 0.000000e+00 3131.0
12 TraesCS4D01G091400 chr4B 95.693 1509 51 9 5428 6927 96937361 96935858 0.000000e+00 2414.0
13 TraesCS4D01G091400 chr4B 95.364 604 19 7 6919 7515 96935113 96934512 0.000000e+00 952.0
14 TraesCS4D01G091400 chr4B 92.797 236 14 2 233 468 96942716 96942484 1.030000e-88 339.0
15 TraesCS4D01G091400 chr4B 89.344 244 23 1 508 748 96942487 96942244 3.760000e-78 303.0
16 TraesCS4D01G091400 chr4B 84.706 170 11 6 3 159 96942925 96942758 1.120000e-33 156.0
17 TraesCS4D01G091400 chr4B 82.468 154 17 7 8060 8210 4568137 4568283 8.750000e-25 126.0
18 TraesCS4D01G091400 chr4B 98.148 54 1 0 3205 3258 418206857 418206804 2.470000e-15 95.3
19 TraesCS4D01G091400 chr2B 87.622 2262 242 33 892 3135 154244867 154247108 0.000000e+00 2591.0
20 TraesCS4D01G091400 chr2B 85.327 1254 151 26 5513 6750 154250824 154252060 0.000000e+00 1266.0
21 TraesCS4D01G091400 chr2B 95.164 703 28 5 6533 7233 772922228 772921530 0.000000e+00 1105.0
22 TraesCS4D01G091400 chr2B 95.021 703 28 6 6533 7233 263834034 263834731 0.000000e+00 1098.0
23 TraesCS4D01G091400 chr2B 83.976 986 113 24 3485 4434 154248802 154249778 0.000000e+00 904.0
24 TraesCS4D01G091400 chr2B 82.821 716 97 14 4469 5166 154249845 154250552 1.180000e-172 617.0
25 TraesCS4D01G091400 chr2B 95.135 185 7 1 6269 6451 106851877 106852061 2.930000e-74 291.0
26 TraesCS4D01G091400 chr2B 100.000 51 0 0 6396 6446 263833986 263834036 2.470000e-15 95.3
27 TraesCS4D01G091400 chr2A 87.831 2227 240 24 925 3135 101905159 101907370 0.000000e+00 2582.0
28 TraesCS4D01G091400 chr2A 84.817 1258 152 28 5513 6750 101909866 101911104 0.000000e+00 1229.0
29 TraesCS4D01G091400 chr2A 94.602 704 30 7 6533 7233 485221983 485222681 0.000000e+00 1083.0
30 TraesCS4D01G091400 chr2A 94.460 704 31 7 6533 7233 485201419 485202117 0.000000e+00 1077.0
31 TraesCS4D01G091400 chr2A 81.110 1207 181 33 3259 4434 101907464 101908654 0.000000e+00 922.0
32 TraesCS4D01G091400 chr2A 83.589 652 82 16 4528 5164 101908711 101909352 9.280000e-164 588.0
33 TraesCS4D01G091400 chr2A 84.388 237 14 9 8060 8273 155766470 155766706 2.350000e-50 211.0
34 TraesCS4D01G091400 chr2A 82.917 240 18 9 8060 8276 760600534 760600295 2.360000e-45 195.0
35 TraesCS4D01G091400 chr2A 100.000 51 0 0 6396 6446 485221935 485221985 2.470000e-15 95.3
36 TraesCS4D01G091400 chr2A 100.000 51 0 0 6396 6446 687891505 687891555 2.470000e-15 95.3
37 TraesCS4D01G091400 chr2A 96.429 56 2 0 8218 8273 142428616 142428671 8.870000e-15 93.5
38 TraesCS4D01G091400 chr2D 87.849 2222 236 28 931 3135 102867717 102869921 0.000000e+00 2577.0
39 TraesCS4D01G091400 chr2D 84.964 1257 157 23 5513 6750 102872238 102873481 0.000000e+00 1245.0
40 TraesCS4D01G091400 chr2D 81.878 1214 151 40 3259 4434 102870015 102871197 0.000000e+00 959.0
41 TraesCS4D01G091400 chr2D 82.838 740 90 21 4504 5224 102871303 102872024 5.470000e-176 628.0
42 TraesCS4D01G091400 chr2D 84.956 226 21 12 8060 8273 65561196 65561420 5.040000e-52 217.0
43 TraesCS4D01G091400 chr6B 95.164 703 28 5 6533 7233 95971513 95972211 0.000000e+00 1105.0
44 TraesCS4D01G091400 chr6B 96.923 65 1 1 3882 3946 686923767 686923830 3.170000e-19 108.0
45 TraesCS4D01G091400 chr7B 93.494 707 39 6 6529 7233 697907750 697908451 0.000000e+00 1044.0
46 TraesCS4D01G091400 chr7B 88.108 185 7 2 6269 6451 697907578 697907749 1.090000e-48 206.0
47 TraesCS4D01G091400 chr7B 98.077 52 1 0 3207 3258 251129981 251130032 3.190000e-14 91.6
48 TraesCS4D01G091400 chrUn 97.487 398 6 3 2246 2643 479413068 479413461 0.000000e+00 676.0
49 TraesCS4D01G091400 chrUn 93.548 62 3 1 3198 3258 88784700 88784639 3.190000e-14 91.6
50 TraesCS4D01G091400 chr7D 92.994 157 9 2 8060 8214 75346788 75346944 2.330000e-55 228.0
51 TraesCS4D01G091400 chr7D 91.824 159 9 3 8060 8214 614107453 614107611 1.400000e-52 219.0
52 TraesCS4D01G091400 chr7D 90.244 164 10 6 8057 8214 63396798 63396961 8.440000e-50 209.0
53 TraesCS4D01G091400 chr7D 84.138 145 13 3 4268 4404 218414557 218414415 1.880000e-26 132.0
54 TraesCS4D01G091400 chr3D 92.357 157 10 2 8060 8214 21810941 21810785 1.080000e-53 222.0
55 TraesCS4D01G091400 chr3D 91.083 157 12 2 8060 8214 356633108 356632952 2.350000e-50 211.0
56 TraesCS4D01G091400 chr3D 98.077 52 0 1 3208 3258 173587199 173587148 1.150000e-13 89.8
57 TraesCS4D01G091400 chr3D 98.000 50 1 0 3208 3257 488897022 488897071 4.130000e-13 87.9
58 TraesCS4D01G091400 chr3A 91.083 157 12 2 8060 8214 682358687 682358843 2.350000e-50 211.0
59 TraesCS4D01G091400 chr3A 78.059 237 27 14 8059 8272 147500144 147500378 8.750000e-25 126.0
60 TraesCS4D01G091400 chr5B 83.122 237 17 9 8060 8273 229081972 229081736 2.360000e-45 195.0
61 TraesCS4D01G091400 chr5A 81.667 240 21 9 8060 8276 636410708 636410469 2.380000e-40 178.0
62 TraesCS4D01G091400 chr5A 95.000 40 1 1 4356 4395 267892999 267892961 2.500000e-05 62.1
63 TraesCS4D01G091400 chr1B 98.148 54 1 0 3205 3258 491535993 491535940 2.470000e-15 95.3
64 TraesCS4D01G091400 chr1B 98.077 52 0 1 3207 3258 592571932 592571982 1.150000e-13 89.8
65 TraesCS4D01G091400 chr3B 96.226 53 2 0 3206 3258 156580778 156580830 4.130000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G091400 chr4D 66314695 66322994 8299 True 15328.000000 15328 100.000000 1 8300 1 chr4D.!!$R1 8299
1 TraesCS4D01G091400 chr4A 514999550 515008059 8509 True 1948.666667 3842 92.758000 1 8134 6 chr4A.!!$R1 8133
2 TraesCS4D01G091400 chr4A 597816011 597816699 688 False 1075.000000 1075 94.805000 6543 7233 1 chr4A.!!$F1 690
3 TraesCS4D01G091400 chr4B 96934512 96942925 8413 True 1587.714286 3819 92.253429 3 7515 7 chr4B.!!$R2 7512
4 TraesCS4D01G091400 chr2B 154244867 154252060 7193 False 1344.500000 2591 84.936500 892 6750 4 chr2B.!!$F2 5858
5 TraesCS4D01G091400 chr2B 772921530 772922228 698 True 1105.000000 1105 95.164000 6533 7233 1 chr2B.!!$R1 700
6 TraesCS4D01G091400 chr2B 263833986 263834731 745 False 596.650000 1098 97.510500 6396 7233 2 chr2B.!!$F3 837
7 TraesCS4D01G091400 chr2A 101905159 101911104 5945 False 1330.250000 2582 84.336750 925 6750 4 chr2A.!!$F5 5825
8 TraesCS4D01G091400 chr2A 485201419 485202117 698 False 1077.000000 1077 94.460000 6533 7233 1 chr2A.!!$F3 700
9 TraesCS4D01G091400 chr2A 485221935 485222681 746 False 589.150000 1083 97.301000 6396 7233 2 chr2A.!!$F6 837
10 TraesCS4D01G091400 chr2D 102867717 102873481 5764 False 1352.250000 2577 84.382250 931 6750 4 chr2D.!!$F2 5819
11 TraesCS4D01G091400 chr6B 95971513 95972211 698 False 1105.000000 1105 95.164000 6533 7233 1 chr6B.!!$F1 700
12 TraesCS4D01G091400 chr7B 697907578 697908451 873 False 625.000000 1044 90.801000 6269 7233 2 chr7B.!!$F2 964

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
451 479 0.654472 GTTTGCACGCACGAGAACAG 60.654 55.000 0.00 0.0 0.00 3.16 F
823 905 1.267806 GCCATCGTTTGCCATATCCAG 59.732 52.381 0.00 0.0 0.00 3.86 F
2398 2486 1.000274 AGCATTGAACAGGTTTTCCGC 60.000 47.619 0.00 0.0 46.35 5.54 F
3201 3421 1.064166 CCCCCATTCAGATTCTGCAGT 60.064 52.381 14.67 0.0 0.00 4.40 F
4115 5746 1.386533 ATGCCAAAGATGAGCTTCCG 58.613 50.000 0.00 0.0 35.24 4.30 F
5062 6759 0.037160 GAAAGCGTTACCCCCAAGGA 59.963 55.000 0.00 0.0 39.89 3.36 F
5407 7388 0.731417 CTTCTGCTGGCATTCCTTCG 59.269 55.000 0.00 0.0 0.00 3.79 F
6775 8862 1.004745 CCTGTTGGTTCTGGGCACTAT 59.995 52.381 0.00 0.0 0.00 2.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1443 1526 2.229784 GCCAACATCAGAAAACTCCTGG 59.770 50.000 0.00 0.00 32.73 4.45 R
2579 2667 2.413634 GGGACAATGAGGTTAAAACGCG 60.414 50.000 3.53 3.53 0.00 6.01 R
4107 5738 1.068954 CCTGAAAAGCAACGGAAGCTC 60.069 52.381 0.00 0.00 42.53 4.09 R
4991 6688 1.153066 TTGCTTCAGGTGGTCGCAA 60.153 52.632 0.00 0.00 38.16 4.85 R
5923 7983 1.768275 TCCGCATCAATATGACCCAGT 59.232 47.619 0.00 0.00 34.84 4.00 R
6299 8375 1.494721 TCCCAATCAAGCATAGGGACC 59.505 52.381 0.00 0.00 43.39 4.46 R
7073 9916 0.671472 GTTGGGCATGCAGAAAAGGC 60.671 55.000 21.36 0.00 0.00 4.35 R
8228 11589 0.104120 TTATGTCAGGATGTCCGGCG 59.896 55.000 0.00 0.00 42.08 6.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 67 2.478335 GAACCCATTCTCGGTGCCCA 62.478 60.000 0.00 0.00 32.55 5.36
162 176 0.911769 ACGCTCCCCATCATCAGAAA 59.088 50.000 0.00 0.00 0.00 2.52
163 177 1.492176 ACGCTCCCCATCATCAGAAAT 59.508 47.619 0.00 0.00 0.00 2.17
164 178 2.149578 CGCTCCCCATCATCAGAAATC 58.850 52.381 0.00 0.00 0.00 2.17
165 179 2.486013 CGCTCCCCATCATCAGAAATCA 60.486 50.000 0.00 0.00 0.00 2.57
166 180 3.559069 GCTCCCCATCATCAGAAATCAA 58.441 45.455 0.00 0.00 0.00 2.57
167 181 3.568853 GCTCCCCATCATCAGAAATCAAG 59.431 47.826 0.00 0.00 0.00 3.02
168 182 4.688045 GCTCCCCATCATCAGAAATCAAGA 60.688 45.833 0.00 0.00 0.00 3.02
169 183 5.045012 TCCCCATCATCAGAAATCAAGAG 57.955 43.478 0.00 0.00 0.00 2.85
170 184 3.568853 CCCCATCATCAGAAATCAAGAGC 59.431 47.826 0.00 0.00 0.00 4.09
171 185 3.250280 CCCATCATCAGAAATCAAGAGCG 59.750 47.826 0.00 0.00 0.00 5.03
172 186 4.124970 CCATCATCAGAAATCAAGAGCGA 58.875 43.478 0.00 0.00 0.00 4.93
173 187 4.573607 CCATCATCAGAAATCAAGAGCGAA 59.426 41.667 0.00 0.00 0.00 4.70
174 188 5.277393 CCATCATCAGAAATCAAGAGCGAAG 60.277 44.000 0.00 0.00 0.00 3.79
267 295 1.587043 CCTCGCCGTCAAGAGAGTGA 61.587 60.000 0.00 0.00 36.65 3.41
337 365 4.072088 CACGTTCTTCCGGTGCGC 62.072 66.667 0.00 0.00 0.00 6.09
400 428 2.656069 GCCAAGAGCGTAGGACCCA 61.656 63.158 0.00 0.00 0.00 4.51
451 479 0.654472 GTTTGCACGCACGAGAACAG 60.654 55.000 0.00 0.00 0.00 3.16
532 560 4.161001 GGTTTTGGGATGATGCTGATTCTT 59.839 41.667 0.00 0.00 0.00 2.52
543 571 5.131642 TGATGCTGATTCTTAGGTTCCTGAT 59.868 40.000 1.12 0.00 0.00 2.90
555 583 2.820197 GGTTCCTGATGTTCCAAGGTTC 59.180 50.000 0.00 0.00 0.00 3.62
575 603 4.335735 TCAATTGAACCTCATTCCCCAT 57.664 40.909 5.45 0.00 36.36 4.00
594 622 3.788672 GCTATGTAGCTTGCTGGGT 57.211 52.632 5.26 0.00 45.62 4.51
605 633 2.478539 GCTTGCTGGGTTCGATTCATTC 60.479 50.000 0.00 0.00 0.00 2.67
619 647 4.970003 CGATTCATTCCGCTTTTGTATTCC 59.030 41.667 0.00 0.00 0.00 3.01
626 654 2.817258 CCGCTTTTGTATTCCCAGTCAA 59.183 45.455 0.00 0.00 0.00 3.18
823 905 1.267806 GCCATCGTTTGCCATATCCAG 59.732 52.381 0.00 0.00 0.00 3.86
911 993 8.345565 TCTGCAAGTAATGTCTTCTTTTCTTTC 58.654 33.333 0.00 0.00 33.76 2.62
985 1068 7.715249 GGCTCATGTTTCTAATGTGATAGGTAA 59.285 37.037 0.00 0.00 0.00 2.85
1086 1169 1.949525 GCCGCTGTTATGAATGGACAT 59.050 47.619 0.00 0.00 0.00 3.06
1443 1526 2.163815 TCAGAAGTACCGTGAGCTTAGC 59.836 50.000 0.00 0.00 0.00 3.09
1464 1547 2.229784 CCAGGAGTTTTCTGATGTTGGC 59.770 50.000 0.00 0.00 34.36 4.52
1535 1618 1.144057 CGACGGAAATCCTGAGGGG 59.856 63.158 0.00 0.00 0.00 4.79
1653 1736 6.154706 TGTGGGAAGAGAGTATAGTTTTCCTC 59.845 42.308 14.23 3.77 35.55 3.71
2123 2207 6.196353 GCATGCATATTTTGTAGTTTACCACG 59.804 38.462 14.21 0.00 0.00 4.94
2134 2218 1.874872 GTTTACCACGTGCTGGCTTTA 59.125 47.619 10.91 0.00 45.32 1.85
2163 2248 5.762179 AGGGAACATTCATGTCTCACTTA 57.238 39.130 0.00 0.00 40.80 2.24
2224 2310 7.898014 AGTTTGGTTTAATTTCTTCCAGTCT 57.102 32.000 0.00 0.00 0.00 3.24
2233 2319 6.642733 AATTTCTTCCAGTCTTATCCCTGA 57.357 37.500 0.00 0.00 0.00 3.86
2240 2326 8.432805 TCTTCCAGTCTTATCCCTGATTAATTC 58.567 37.037 0.00 0.00 0.00 2.17
2398 2486 1.000274 AGCATTGAACAGGTTTTCCGC 60.000 47.619 0.00 0.00 46.35 5.54
2579 2667 1.071605 CTTTGCTACTGAGACGGTGC 58.928 55.000 0.00 0.00 0.00 5.01
2583 2671 3.324099 CTACTGAGACGGTGCGCGT 62.324 63.158 8.43 0.00 0.00 6.01
2592 2680 1.154543 CGGTGCGCGTTTTAACCTC 60.155 57.895 8.43 0.00 0.00 3.85
2596 2684 1.976045 GTGCGCGTTTTAACCTCATTG 59.024 47.619 8.43 0.00 0.00 2.82
2608 2696 1.774254 ACCTCATTGTCCCACTTGACA 59.226 47.619 0.00 0.00 43.26 3.58
2649 2738 6.036300 CCATTGACATGTGCATAATTTGGAAC 59.964 38.462 1.15 0.00 0.00 3.62
2982 3077 6.670695 AGCCCTTCTCACAATAATTTTGTT 57.329 33.333 4.05 0.00 0.00 2.83
3083 3178 2.832733 AGGTAAGGCTGTGTAGTCTTCC 59.167 50.000 0.00 0.83 45.43 3.46
3084 3179 2.093606 GGTAAGGCTGTGTAGTCTTCCC 60.094 54.545 0.00 0.00 45.43 3.97
3087 3182 3.185880 AGGCTGTGTAGTCTTCCCTTA 57.814 47.619 0.00 0.00 34.53 2.69
3093 3188 5.742255 GCTGTGTAGTCTTCCCTTACAACTT 60.742 44.000 0.00 0.00 0.00 2.66
3157 3377 6.128391 TGCGTGGAATTTGTATGTCTTTCTAC 60.128 38.462 0.00 0.00 0.00 2.59
3188 3408 3.049108 TGATCAAATGCATCCCCCATT 57.951 42.857 0.00 0.00 34.56 3.16
3195 3415 2.369983 TGCATCCCCCATTCAGATTC 57.630 50.000 0.00 0.00 0.00 2.52
3196 3416 1.854939 TGCATCCCCCATTCAGATTCT 59.145 47.619 0.00 0.00 0.00 2.40
3197 3417 2.236766 GCATCCCCCATTCAGATTCTG 58.763 52.381 7.38 7.38 0.00 3.02
3198 3418 2.236766 CATCCCCCATTCAGATTCTGC 58.763 52.381 8.89 0.00 0.00 4.26
3199 3419 1.297968 TCCCCCATTCAGATTCTGCA 58.702 50.000 8.89 0.00 0.00 4.41
3200 3420 1.213678 TCCCCCATTCAGATTCTGCAG 59.786 52.381 7.63 7.63 0.00 4.41
3201 3421 1.064166 CCCCCATTCAGATTCTGCAGT 60.064 52.381 14.67 0.00 0.00 4.40
3202 3422 2.622452 CCCCCATTCAGATTCTGCAGTT 60.622 50.000 14.67 2.24 0.00 3.16
3203 3423 2.426024 CCCCATTCAGATTCTGCAGTTG 59.574 50.000 14.67 8.56 0.00 3.16
3204 3424 3.087031 CCCATTCAGATTCTGCAGTTGT 58.913 45.455 14.67 0.38 0.00 3.32
3205 3425 3.128242 CCCATTCAGATTCTGCAGTTGTC 59.872 47.826 14.67 10.27 0.00 3.18
3206 3426 4.008330 CCATTCAGATTCTGCAGTTGTCT 58.992 43.478 14.67 12.35 0.00 3.41
3207 3427 4.458295 CCATTCAGATTCTGCAGTTGTCTT 59.542 41.667 14.67 0.00 0.00 3.01
3208 3428 5.048224 CCATTCAGATTCTGCAGTTGTCTTT 60.048 40.000 14.67 1.32 0.00 2.52
3209 3429 6.444633 CATTCAGATTCTGCAGTTGTCTTTT 58.555 36.000 14.67 1.01 0.00 2.27
3210 3430 6.455360 TTCAGATTCTGCAGTTGTCTTTTT 57.545 33.333 14.67 0.00 0.00 1.94
3242 3462 3.910989 GGCATAACCCCTTTCCATTACT 58.089 45.455 0.00 0.00 0.00 2.24
3243 3463 4.286707 GGCATAACCCCTTTCCATTACTT 58.713 43.478 0.00 0.00 0.00 2.24
3244 3464 5.451354 GGCATAACCCCTTTCCATTACTTA 58.549 41.667 0.00 0.00 0.00 2.24
3245 3465 6.075315 GGCATAACCCCTTTCCATTACTTAT 58.925 40.000 0.00 0.00 0.00 1.73
3246 3466 6.208797 GGCATAACCCCTTTCCATTACTTATC 59.791 42.308 0.00 0.00 0.00 1.75
3247 3467 6.775629 GCATAACCCCTTTCCATTACTTATCA 59.224 38.462 0.00 0.00 0.00 2.15
3248 3468 7.451566 GCATAACCCCTTTCCATTACTTATCAT 59.548 37.037 0.00 0.00 0.00 2.45
3251 3471 8.762481 AACCCCTTTCCATTACTTATCATAAC 57.238 34.615 0.00 0.00 0.00 1.89
3252 3472 6.996282 ACCCCTTTCCATTACTTATCATAACG 59.004 38.462 0.00 0.00 0.00 3.18
3253 3473 6.430000 CCCCTTTCCATTACTTATCATAACGG 59.570 42.308 0.00 0.00 0.00 4.44
3254 3474 7.221450 CCCTTTCCATTACTTATCATAACGGA 58.779 38.462 0.00 0.00 0.00 4.69
3255 3475 7.717875 CCCTTTCCATTACTTATCATAACGGAA 59.282 37.037 0.00 0.00 33.30 4.30
3256 3476 9.116067 CCTTTCCATTACTTATCATAACGGAAA 57.884 33.333 5.29 5.29 40.01 3.13
3290 3511 8.892723 TGTCTTTCTGCGTTGATTATGATAATT 58.107 29.630 0.00 0.00 0.00 1.40
3298 3519 9.676195 TGCGTTGATTATGATAATTAAATGTGG 57.324 29.630 4.26 0.00 0.00 4.17
3401 3622 9.353999 GATGTTTACCAGTTTGATATTTGAACC 57.646 33.333 0.00 0.00 0.00 3.62
3460 5058 6.765989 GTGGCATGTAGTTGGAAGTCATTATA 59.234 38.462 0.00 0.00 0.00 0.98
3515 5113 2.348362 TGAAAGATACATGCGCTGTTCG 59.652 45.455 9.73 0.00 39.39 3.95
3528 5128 2.597520 GCTGTTCGTAGTTCTCACCTC 58.402 52.381 0.00 0.00 0.00 3.85
3544 5144 4.693283 TCACCTCAGTAGTTGTGTTGAAG 58.307 43.478 0.00 0.00 0.00 3.02
3545 5145 4.404394 TCACCTCAGTAGTTGTGTTGAAGA 59.596 41.667 0.00 0.00 0.00 2.87
3583 5183 2.103153 AGTTGTCCTCCCAAGAGACA 57.897 50.000 0.00 0.00 43.39 3.41
3584 5184 2.625639 AGTTGTCCTCCCAAGAGACAT 58.374 47.619 0.00 0.00 43.39 3.06
3603 5208 6.849502 AGACATTGTTCTATGTTCATGCTTG 58.150 36.000 0.00 0.00 38.80 4.01
3614 5219 9.617523 TCTATGTTCATGCTTGAATTCTCATAA 57.382 29.630 17.04 8.75 43.49 1.90
3645 5253 9.543018 CTTTACTTAGCTTGCAATACTTGTTAC 57.457 33.333 0.00 0.00 0.00 2.50
3772 5399 8.434661 TGAATTGCTTTTCGAGATTTATTTTGC 58.565 29.630 0.00 0.00 0.00 3.68
3775 5402 8.978564 TTGCTTTTCGAGATTTATTTTGCATA 57.021 26.923 0.00 0.00 0.00 3.14
3800 5427 8.032952 ACCGTGATTCTTATGCAACATATATG 57.967 34.615 11.29 11.29 0.00 1.78
3802 5429 6.679919 CGTGATTCTTATGCAACATATATGCG 59.320 38.462 12.79 5.57 46.76 4.73
3861 5488 2.079170 TGACATTTGGCCTTTGGTCA 57.921 45.000 3.32 10.45 34.47 4.02
4076 5707 6.599638 GTCTGTATCAACCTTAAAGATGCCTT 59.400 38.462 0.00 0.00 0.00 4.35
4078 5709 7.669722 TCTGTATCAACCTTAAAGATGCCTTTT 59.330 33.333 0.00 0.00 42.26 2.27
4107 5738 7.270047 ACATATCCTTTTGAATGCCAAAGATG 58.730 34.615 0.00 0.00 44.67 2.90
4115 5746 1.386533 ATGCCAAAGATGAGCTTCCG 58.613 50.000 0.00 0.00 35.24 4.30
4135 5766 2.671070 CGTTGCTTTTCAGGCATTACCC 60.671 50.000 0.00 0.00 40.58 3.69
4451 6121 6.533730 AGGATGACTGATAAGAAACAACACA 58.466 36.000 0.00 0.00 0.00 3.72
4452 6122 6.428159 AGGATGACTGATAAGAAACAACACAC 59.572 38.462 0.00 0.00 0.00 3.82
4453 6123 6.204688 GGATGACTGATAAGAAACAACACACA 59.795 38.462 0.00 0.00 0.00 3.72
4454 6124 6.358118 TGACTGATAAGAAACAACACACAC 57.642 37.500 0.00 0.00 0.00 3.82
4455 6125 6.112734 TGACTGATAAGAAACAACACACACT 58.887 36.000 0.00 0.00 0.00 3.55
4456 6126 7.269316 TGACTGATAAGAAACAACACACACTA 58.731 34.615 0.00 0.00 0.00 2.74
4457 6127 7.931407 TGACTGATAAGAAACAACACACACTAT 59.069 33.333 0.00 0.00 0.00 2.12
4458 6128 8.087982 ACTGATAAGAAACAACACACACTATG 57.912 34.615 0.00 0.00 0.00 2.23
4459 6129 7.931407 ACTGATAAGAAACAACACACACTATGA 59.069 33.333 0.00 0.00 0.00 2.15
4461 6131 9.283768 TGATAAGAAACAACACACACTATGAAT 57.716 29.630 0.00 0.00 0.00 2.57
4661 6344 3.386402 AGAAACCTCCAGCATCTAGTAGC 59.614 47.826 0.00 1.68 0.00 3.58
4735 6418 6.547510 ACCTTGCTTCATTGTTCTTCTAGTTT 59.452 34.615 0.00 0.00 0.00 2.66
4823 6516 2.989840 GGTGAGTTGAAGATCGTGACAG 59.010 50.000 0.00 0.00 0.00 3.51
4855 6548 6.877611 ATTGTGGTCGTTTATCTTCAGTTT 57.122 33.333 0.00 0.00 0.00 2.66
4865 6562 8.248253 TCGTTTATCTTCAGTTTGCTAGTCATA 58.752 33.333 0.00 0.00 0.00 2.15
4900 6597 2.741759 AGCGTTGGCCCAAAATTTAG 57.258 45.000 0.00 0.00 41.24 1.85
4948 6645 2.752903 GGTGCCTGTACCATTACCTTTG 59.247 50.000 0.00 0.00 40.54 2.77
5062 6759 0.037160 GAAAGCGTTACCCCCAAGGA 59.963 55.000 0.00 0.00 39.89 3.36
5075 6772 2.225017 CCCCAAGGACTTCCAAAGCTAA 60.225 50.000 0.00 0.00 38.89 3.09
5097 6794 7.044314 GCTAAATCCAATTACGGTGAAAATTCG 60.044 37.037 0.00 0.00 0.00 3.34
5118 6815 8.958119 ATTCGTCTTACATAATGCCTCTTTTA 57.042 30.769 0.00 0.00 0.00 1.52
5121 6818 8.038944 TCGTCTTACATAATGCCTCTTTTAAGT 58.961 33.333 0.00 0.00 0.00 2.24
5124 6821 9.733556 TCTTACATAATGCCTCTTTTAAGTTCA 57.266 29.630 0.00 0.00 0.00 3.18
5169 6866 5.966742 ACCATTTTTGTTTAGAGAGGCTC 57.033 39.130 6.34 6.34 0.00 4.70
5171 6868 5.474876 ACCATTTTTGTTTAGAGAGGCTCAG 59.525 40.000 18.26 0.00 32.06 3.35
5209 7187 6.777580 AGGAAGTCAAATTTATGTTGTCAGGT 59.222 34.615 0.00 0.00 0.00 4.00
5213 7191 8.647143 AGTCAAATTTATGTTGTCAGGTTTTG 57.353 30.769 0.00 0.00 0.00 2.44
5290 7268 5.063060 CAGTACATCGTCCATGCATGATATG 59.937 44.000 28.31 22.98 35.65 1.78
5407 7388 0.731417 CTTCTGCTGGCATTCCTTCG 59.269 55.000 0.00 0.00 0.00 3.79
5491 7540 7.589221 GTCATCCTAAAGCGATCATTTTGAATC 59.411 37.037 0.00 0.00 0.00 2.52
5597 7647 3.935315 TGAGGATCTTGAGCAGAAACTG 58.065 45.455 0.00 0.00 34.16 3.16
5661 7711 4.023291 TCAATTAAGAAATGCCCAGTCCC 58.977 43.478 0.00 0.00 0.00 4.46
5662 7712 3.756082 ATTAAGAAATGCCCAGTCCCA 57.244 42.857 0.00 0.00 0.00 4.37
5720 7775 3.320826 TGTCTCAGTCCGATCAAAGTGAA 59.679 43.478 0.00 0.00 0.00 3.18
5754 7809 5.774690 TCATGGTACCAAAGAAAAGCTGAAT 59.225 36.000 20.76 0.00 0.00 2.57
5822 7877 5.596361 ACAGGTTGGTTGAATGTTTGTATGA 59.404 36.000 0.00 0.00 0.00 2.15
5848 7905 7.156876 TGATCCTTGTTAAACAGCTAAATGG 57.843 36.000 0.00 0.00 0.00 3.16
5864 7924 4.387026 AAATGGGTTCTCACATTCTCCA 57.613 40.909 0.00 0.00 45.64 3.86
5865 7925 4.598036 AATGGGTTCTCACATTCTCCAT 57.402 40.909 0.00 0.00 43.28 3.41
5923 7983 1.063616 CGGTCTCGCGTTCTGAAGATA 59.936 52.381 5.77 0.00 0.00 1.98
6005 8065 1.030488 CACTGGGGATGAGCTGCTTG 61.030 60.000 2.53 0.00 0.00 4.01
6071 8134 6.474427 GTGGGTTCAGTTTTTGCTTACTTTAC 59.526 38.462 0.00 0.00 0.00 2.01
6173 8237 2.354510 CTGCTTTGTTCCGTGTGAGAAA 59.645 45.455 0.00 0.00 0.00 2.52
6242 8306 2.271497 CTCCAGGAGGCTGCAAGG 59.729 66.667 8.88 10.01 33.74 3.61
6299 8375 1.121407 TATCGCCACCCATCTCCCTG 61.121 60.000 0.00 0.00 0.00 4.45
6381 8460 5.608449 TGCAAATTGGACATCAATGTTGAA 58.392 33.333 0.00 0.00 44.68 2.69
6548 8632 9.859427 TTATTTCCAATTGTGACATTGATTCTC 57.141 29.630 4.43 0.00 0.00 2.87
6618 8703 3.210227 TGCTGCTGCAGTTTTTGTAGTA 58.790 40.909 28.50 0.00 45.31 1.82
6775 8862 1.004745 CCTGTTGGTTCTGGGCACTAT 59.995 52.381 0.00 0.00 0.00 2.12
6814 8901 5.814705 GGATAATGAGAGTGTCTGTCTTTGG 59.185 44.000 5.69 0.00 0.00 3.28
7058 9901 9.445878 CATATATAGAAGTTGTGATTGGCATCT 57.554 33.333 0.00 0.00 0.00 2.90
7073 9916 3.822735 TGGCATCTGACTTTCTTCTTTGG 59.177 43.478 0.00 0.00 0.00 3.28
7103 9947 3.243704 TGCATGCCCAACACTTTACTTTC 60.244 43.478 16.68 0.00 0.00 2.62
7162 10006 3.157932 TGCTTTGTTTTCCTTTGTCGG 57.842 42.857 0.00 0.00 0.00 4.79
7442 10287 4.694512 ACCCCTAGGCAATTTATTTTGGT 58.305 39.130 2.05 0.00 36.11 3.67
7445 10290 6.155565 ACCCCTAGGCAATTTATTTTGGTAAC 59.844 38.462 2.05 0.00 36.11 2.50
7490 10335 3.064545 CGAAATTCTCCAGGCATTGAGAC 59.935 47.826 1.06 0.00 37.35 3.36
7493 10338 5.441718 AATTCTCCAGGCATTGAGACTTA 57.558 39.130 1.06 0.00 37.35 2.24
7535 10873 7.930513 AATTTGACGGACTCTTTTTCAATTC 57.069 32.000 0.00 0.00 0.00 2.17
8034 11387 6.869315 TTTTCATAGGTCAACGTTTGATCA 57.131 33.333 0.00 0.00 43.29 2.92
8037 11390 5.168569 TCATAGGTCAACGTTTGATCAGTC 58.831 41.667 0.00 0.00 43.29 3.51
8041 11394 3.531982 GTCAACGTTTGATCAGTCAACG 58.468 45.455 23.02 23.02 43.72 4.10
8045 11398 1.124297 CGTTTGATCAGTCAACGGTCG 59.876 52.381 18.93 0.00 43.72 4.79
8058 11411 3.514510 CGGTCGAACGAAGCGTATA 57.485 52.632 20.37 0.00 39.99 1.47
8087 11448 0.572590 CATAGTACAGACGCAAGCGC 59.427 55.000 15.09 0.00 44.19 5.92
8099 11460 1.209128 GCAAGCGCTCATACATACGT 58.791 50.000 12.06 0.00 34.30 3.57
8111 11472 5.278604 TCATACATACGTGCATACACTCAC 58.721 41.667 0.00 0.00 45.10 3.51
8120 11481 3.871594 GTGCATACACTCACCCTATGAAC 59.128 47.826 0.00 0.00 43.85 3.18
8125 11486 0.108804 ACTCACCCTATGAACGCACG 60.109 55.000 0.00 0.00 36.69 5.34
8131 11492 2.725699 CTATGAACGCACGCACGCA 61.726 57.895 0.00 0.00 36.19 5.24
8134 11495 4.368808 GAACGCACGCACGCACAT 62.369 61.111 0.00 0.00 36.19 3.21
8135 11496 4.368808 AACGCACGCACGCACATC 62.369 61.111 0.00 0.00 36.19 3.06
8137 11498 3.178592 CGCACGCACGCACATCTA 61.179 61.111 0.00 0.00 0.00 1.98
8138 11499 2.395690 GCACGCACGCACATCTAC 59.604 61.111 0.00 0.00 0.00 2.59
8139 11500 3.081133 CACGCACGCACATCTACC 58.919 61.111 0.00 0.00 0.00 3.18
8140 11501 1.446099 CACGCACGCACATCTACCT 60.446 57.895 0.00 0.00 0.00 3.08
8141 11502 1.153823 ACGCACGCACATCTACCTC 60.154 57.895 0.00 0.00 0.00 3.85
8142 11503 1.139734 CGCACGCACATCTACCTCT 59.860 57.895 0.00 0.00 0.00 3.69
8143 11504 0.380733 CGCACGCACATCTACCTCTA 59.619 55.000 0.00 0.00 0.00 2.43
8144 11505 1.001268 CGCACGCACATCTACCTCTAT 60.001 52.381 0.00 0.00 0.00 1.98
8145 11506 2.398498 GCACGCACATCTACCTCTATG 58.602 52.381 0.00 0.00 0.00 2.23
8146 11507 2.034685 GCACGCACATCTACCTCTATGA 59.965 50.000 0.00 0.00 0.00 2.15
8147 11508 3.855154 GCACGCACATCTACCTCTATGAG 60.855 52.174 0.00 0.00 0.00 2.90
8148 11509 2.294791 ACGCACATCTACCTCTATGAGC 59.705 50.000 0.00 0.00 36.65 4.26
8149 11510 2.294512 CGCACATCTACCTCTATGAGCA 59.705 50.000 0.00 0.00 38.95 4.26
8150 11511 3.648009 GCACATCTACCTCTATGAGCAC 58.352 50.000 0.00 0.00 38.88 4.40
8151 11512 3.553922 GCACATCTACCTCTATGAGCACC 60.554 52.174 0.00 0.00 38.88 5.01
8152 11513 3.894427 CACATCTACCTCTATGAGCACCT 59.106 47.826 0.00 0.00 0.00 4.00
8153 11514 4.343526 CACATCTACCTCTATGAGCACCTT 59.656 45.833 0.00 0.00 0.00 3.50
8154 11515 4.586841 ACATCTACCTCTATGAGCACCTTC 59.413 45.833 0.00 0.00 0.00 3.46
8155 11516 3.215151 TCTACCTCTATGAGCACCTTCG 58.785 50.000 0.00 0.00 0.00 3.79
8156 11517 2.145397 ACCTCTATGAGCACCTTCGA 57.855 50.000 0.00 0.00 0.00 3.71
8157 11518 2.028130 ACCTCTATGAGCACCTTCGAG 58.972 52.381 0.00 0.00 0.00 4.04
8158 11519 2.302260 CCTCTATGAGCACCTTCGAGA 58.698 52.381 0.00 0.00 0.00 4.04
8159 11520 2.293122 CCTCTATGAGCACCTTCGAGAG 59.707 54.545 0.00 0.00 33.13 3.20
8160 11521 3.210227 CTCTATGAGCACCTTCGAGAGA 58.790 50.000 0.00 0.00 34.28 3.10
8161 11522 3.820467 CTCTATGAGCACCTTCGAGAGAT 59.180 47.826 0.00 0.00 41.60 2.75
8162 11523 4.211125 TCTATGAGCACCTTCGAGAGATT 58.789 43.478 0.00 0.00 41.60 2.40
8163 11524 2.662006 TGAGCACCTTCGAGAGATTG 57.338 50.000 0.00 0.00 41.60 2.67
8164 11525 2.171003 TGAGCACCTTCGAGAGATTGA 58.829 47.619 0.00 0.00 41.60 2.57
8165 11526 2.165234 TGAGCACCTTCGAGAGATTGAG 59.835 50.000 0.00 0.00 41.60 3.02
8166 11527 1.134848 AGCACCTTCGAGAGATTGAGC 60.135 52.381 0.00 0.00 41.60 4.26
8167 11528 1.933247 CACCTTCGAGAGATTGAGCC 58.067 55.000 0.00 0.00 41.60 4.70
8168 11529 0.457851 ACCTTCGAGAGATTGAGCCG 59.542 55.000 0.00 0.00 41.60 5.52
8169 11530 0.249238 CCTTCGAGAGATTGAGCCGG 60.249 60.000 0.00 0.00 41.60 6.13
8170 11531 0.873743 CTTCGAGAGATTGAGCCGGC 60.874 60.000 21.89 21.89 41.60 6.13
8171 11532 1.604147 TTCGAGAGATTGAGCCGGCA 61.604 55.000 31.54 8.70 41.60 5.69
8172 11533 1.068753 CGAGAGATTGAGCCGGCAT 59.931 57.895 31.54 14.27 0.00 4.40
8173 11534 0.315251 CGAGAGATTGAGCCGGCATA 59.685 55.000 31.54 14.63 0.00 3.14
8174 11535 1.067283 CGAGAGATTGAGCCGGCATAT 60.067 52.381 31.54 18.37 0.00 1.78
8175 11536 2.615869 GAGAGATTGAGCCGGCATATC 58.384 52.381 31.54 25.17 0.00 1.63
8176 11537 1.973515 AGAGATTGAGCCGGCATATCA 59.026 47.619 31.54 21.33 0.00 2.15
8177 11538 2.570752 AGAGATTGAGCCGGCATATCAT 59.429 45.455 31.54 16.21 0.00 2.45
8178 11539 2.935201 GAGATTGAGCCGGCATATCATC 59.065 50.000 31.54 20.52 0.00 2.92
8179 11540 2.570752 AGATTGAGCCGGCATATCATCT 59.429 45.455 31.54 22.33 0.00 2.90
8180 11541 2.936919 TTGAGCCGGCATATCATCTT 57.063 45.000 31.54 3.33 0.00 2.40
8181 11542 2.174363 TGAGCCGGCATATCATCTTG 57.826 50.000 31.54 0.00 0.00 3.02
8182 11543 1.693606 TGAGCCGGCATATCATCTTGA 59.306 47.619 31.54 0.00 0.00 3.02
8183 11544 2.289257 TGAGCCGGCATATCATCTTGAG 60.289 50.000 31.54 0.00 0.00 3.02
8184 11545 1.973515 AGCCGGCATATCATCTTGAGA 59.026 47.619 31.54 0.00 0.00 3.27
8185 11546 2.570752 AGCCGGCATATCATCTTGAGAT 59.429 45.455 31.54 0.00 34.56 2.75
8186 11547 3.008813 AGCCGGCATATCATCTTGAGATT 59.991 43.478 31.54 0.00 31.21 2.40
8187 11548 3.755378 GCCGGCATATCATCTTGAGATTT 59.245 43.478 24.80 0.00 31.21 2.17
8188 11549 4.937620 GCCGGCATATCATCTTGAGATTTA 59.062 41.667 24.80 0.00 31.21 1.40
8189 11550 5.587844 GCCGGCATATCATCTTGAGATTTAT 59.412 40.000 24.80 0.00 31.21 1.40
8190 11551 6.457934 GCCGGCATATCATCTTGAGATTTATG 60.458 42.308 24.80 12.28 34.43 1.90
8191 11552 6.820152 CCGGCATATCATCTTGAGATTTATGA 59.180 38.462 17.06 5.24 33.82 2.15
8192 11553 7.335171 CCGGCATATCATCTTGAGATTTATGAA 59.665 37.037 17.06 0.00 33.82 2.57
8193 11554 8.388853 CGGCATATCATCTTGAGATTTATGAAG 58.611 37.037 17.06 10.18 33.82 3.02
8194 11555 9.228949 GGCATATCATCTTGAGATTTATGAAGT 57.771 33.333 17.06 0.00 33.82 3.01
8199 11560 8.713737 TCATCTTGAGATTTATGAAGTCACTG 57.286 34.615 0.00 0.00 31.21 3.66
8200 11561 8.316946 TCATCTTGAGATTTATGAAGTCACTGT 58.683 33.333 0.00 0.00 31.21 3.55
8201 11562 9.591792 CATCTTGAGATTTATGAAGTCACTGTA 57.408 33.333 0.00 0.00 31.21 2.74
8202 11563 9.814899 ATCTTGAGATTTATGAAGTCACTGTAG 57.185 33.333 0.00 0.00 0.00 2.74
8203 11564 8.253810 TCTTGAGATTTATGAAGTCACTGTAGG 58.746 37.037 0.00 0.00 0.00 3.18
8204 11565 6.341316 TGAGATTTATGAAGTCACTGTAGGC 58.659 40.000 0.00 0.00 0.00 3.93
8205 11566 5.352284 AGATTTATGAAGTCACTGTAGGCG 58.648 41.667 0.00 0.00 0.00 5.52
8206 11567 2.579207 TATGAAGTCACTGTAGGCGC 57.421 50.000 0.00 0.00 0.00 6.53
8207 11568 0.108138 ATGAAGTCACTGTAGGCGCC 60.108 55.000 21.89 21.89 0.00 6.53
8208 11569 1.185618 TGAAGTCACTGTAGGCGCCT 61.186 55.000 34.85 34.85 0.00 5.52
8209 11570 0.458716 GAAGTCACTGTAGGCGCCTC 60.459 60.000 36.73 24.38 0.00 4.70
8210 11571 1.889530 AAGTCACTGTAGGCGCCTCC 61.890 60.000 36.73 24.70 0.00 4.30
8212 11573 2.052690 TCACTGTAGGCGCCTCCTC 61.053 63.158 36.73 24.11 43.20 3.71
8213 11574 3.141488 ACTGTAGGCGCCTCCTCG 61.141 66.667 36.73 21.73 43.20 4.63
8221 11582 3.889227 CGCCTCCTCGCATTGAAA 58.111 55.556 0.00 0.00 0.00 2.69
8222 11583 1.717937 CGCCTCCTCGCATTGAAAG 59.282 57.895 0.00 0.00 0.00 2.62
8223 11584 1.431036 GCCTCCTCGCATTGAAAGC 59.569 57.895 0.00 0.00 0.00 3.51
8240 11601 4.592192 CGCATCGCCGGACATCCT 62.592 66.667 5.05 0.00 0.00 3.24
8241 11602 2.969238 GCATCGCCGGACATCCTG 60.969 66.667 5.05 0.00 0.00 3.86
8242 11603 2.814604 CATCGCCGGACATCCTGA 59.185 61.111 5.05 0.00 0.00 3.86
8243 11604 1.592669 CATCGCCGGACATCCTGAC 60.593 63.158 5.05 0.00 0.00 3.51
8244 11605 2.058001 ATCGCCGGACATCCTGACA 61.058 57.895 5.05 0.00 0.00 3.58
8245 11606 1.402896 ATCGCCGGACATCCTGACAT 61.403 55.000 5.05 0.00 0.00 3.06
8246 11607 0.753848 TCGCCGGACATCCTGACATA 60.754 55.000 5.05 0.00 0.00 2.29
8247 11608 0.104120 CGCCGGACATCCTGACATAA 59.896 55.000 5.05 0.00 0.00 1.90
8248 11609 1.472552 CGCCGGACATCCTGACATAAA 60.473 52.381 5.05 0.00 0.00 1.40
8249 11610 2.806745 CGCCGGACATCCTGACATAAAT 60.807 50.000 5.05 0.00 0.00 1.40
8250 11611 2.808543 GCCGGACATCCTGACATAAATC 59.191 50.000 5.05 0.00 0.00 2.17
8251 11612 3.495100 GCCGGACATCCTGACATAAATCT 60.495 47.826 5.05 0.00 0.00 2.40
8252 11613 4.262463 GCCGGACATCCTGACATAAATCTA 60.262 45.833 5.05 0.00 0.00 1.98
8253 11614 5.473931 CCGGACATCCTGACATAAATCTAG 58.526 45.833 0.00 0.00 0.00 2.43
8254 11615 5.473931 CGGACATCCTGACATAAATCTAGG 58.526 45.833 0.00 0.00 0.00 3.02
8255 11616 5.243954 CGGACATCCTGACATAAATCTAGGA 59.756 44.000 0.00 0.00 41.41 2.94
8256 11617 6.239317 CGGACATCCTGACATAAATCTAGGAA 60.239 42.308 0.00 0.00 40.62 3.36
8257 11618 7.526192 CGGACATCCTGACATAAATCTAGGAAT 60.526 40.741 0.00 0.00 40.62 3.01
8258 11619 8.816894 GGACATCCTGACATAAATCTAGGAATA 58.183 37.037 0.00 0.00 40.62 1.75
8262 11623 9.678260 ATCCTGACATAAATCTAGGAATAATGC 57.322 33.333 0.00 0.00 40.62 3.56
8263 11624 7.819415 TCCTGACATAAATCTAGGAATAATGCG 59.181 37.037 0.00 0.00 34.77 4.73
8264 11625 7.819415 CCTGACATAAATCTAGGAATAATGCGA 59.181 37.037 0.00 0.00 0.00 5.10
8265 11626 8.763049 TGACATAAATCTAGGAATAATGCGAG 57.237 34.615 0.00 0.00 0.00 5.03
8266 11627 7.331934 TGACATAAATCTAGGAATAATGCGAGC 59.668 37.037 0.00 0.00 0.00 5.03
8267 11628 7.161404 ACATAAATCTAGGAATAATGCGAGCA 58.839 34.615 0.00 0.00 0.00 4.26
8268 11629 7.826252 ACATAAATCTAGGAATAATGCGAGCAT 59.174 33.333 4.52 4.52 38.46 3.79
8269 11630 6.734104 AAATCTAGGAATAATGCGAGCATC 57.266 37.500 11.26 0.00 35.31 3.91
8270 11631 4.871933 TCTAGGAATAATGCGAGCATCA 57.128 40.909 11.26 0.00 35.31 3.07
8271 11632 4.814147 TCTAGGAATAATGCGAGCATCAG 58.186 43.478 11.26 1.52 35.31 2.90
8272 11633 2.775890 AGGAATAATGCGAGCATCAGG 58.224 47.619 11.26 0.00 35.31 3.86
8273 11634 1.808945 GGAATAATGCGAGCATCAGGG 59.191 52.381 11.26 0.00 35.31 4.45
8274 11635 2.498167 GAATAATGCGAGCATCAGGGT 58.502 47.619 11.26 0.00 35.31 4.34
8275 11636 2.645838 ATAATGCGAGCATCAGGGTT 57.354 45.000 11.26 0.00 35.31 4.11
8276 11637 3.769739 ATAATGCGAGCATCAGGGTTA 57.230 42.857 11.26 0.31 35.31 2.85
8277 11638 2.645838 AATGCGAGCATCAGGGTTAT 57.354 45.000 11.26 0.00 35.31 1.89
8278 11639 3.769739 AATGCGAGCATCAGGGTTATA 57.230 42.857 11.26 0.00 35.31 0.98
8279 11640 2.526304 TGCGAGCATCAGGGTTATAC 57.474 50.000 0.00 0.00 33.17 1.47
8280 11641 1.070134 TGCGAGCATCAGGGTTATACC 59.930 52.381 0.00 0.00 33.70 2.73
8281 11642 1.070134 GCGAGCATCAGGGTTATACCA 59.930 52.381 0.00 0.00 35.61 3.25
8282 11643 2.755650 CGAGCATCAGGGTTATACCAC 58.244 52.381 0.00 0.00 35.61 4.16
8283 11644 2.365617 CGAGCATCAGGGTTATACCACT 59.634 50.000 0.00 0.00 35.61 4.00
8284 11645 3.733337 GAGCATCAGGGTTATACCACTG 58.267 50.000 0.00 0.00 35.61 3.66
8285 11646 3.115390 AGCATCAGGGTTATACCACTGT 58.885 45.455 0.00 0.00 41.02 3.55
8286 11647 3.134804 AGCATCAGGGTTATACCACTGTC 59.865 47.826 0.00 0.00 41.02 3.51
8287 11648 3.744530 GCATCAGGGTTATACCACTGTCC 60.745 52.174 0.00 0.00 41.02 4.02
8288 11649 2.474112 TCAGGGTTATACCACTGTCCC 58.526 52.381 0.00 0.00 41.02 4.46
8289 11650 2.193127 CAGGGTTATACCACTGTCCCA 58.807 52.381 0.00 0.00 41.02 4.37
8290 11651 2.093128 CAGGGTTATACCACTGTCCCAC 60.093 54.545 0.00 0.00 41.02 4.61
8291 11652 2.193993 GGGTTATACCACTGTCCCACT 58.806 52.381 0.00 0.00 41.02 4.00
8292 11653 3.013188 AGGGTTATACCACTGTCCCACTA 59.987 47.826 0.00 0.00 41.02 2.74
8293 11654 3.776417 GGGTTATACCACTGTCCCACTAA 59.224 47.826 0.00 0.00 41.02 2.24
8294 11655 4.383444 GGGTTATACCACTGTCCCACTAAC 60.383 50.000 0.00 0.00 41.02 2.34
8295 11656 4.383444 GGTTATACCACTGTCCCACTAACC 60.383 50.000 0.00 0.00 38.42 2.85
8296 11657 2.402182 TACCACTGTCCCACTAACCA 57.598 50.000 0.00 0.00 0.00 3.67
8297 11658 1.742308 ACCACTGTCCCACTAACCAT 58.258 50.000 0.00 0.00 0.00 3.55
8298 11659 1.628846 ACCACTGTCCCACTAACCATC 59.371 52.381 0.00 0.00 0.00 3.51
8299 11660 1.065418 CCACTGTCCCACTAACCATCC 60.065 57.143 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 67 2.655364 CGTCGCAGAATCGCCGAT 60.655 61.111 0.00 0.00 39.69 4.18
146 160 5.045012 TCTTGATTTCTGATGATGGGGAG 57.955 43.478 0.00 0.00 0.00 4.30
162 176 2.187946 CCGCCCTTCGCTCTTGAT 59.812 61.111 0.00 0.00 36.73 2.57
163 177 4.082523 CCCGCCCTTCGCTCTTGA 62.083 66.667 0.00 0.00 36.73 3.02
179 193 4.785453 CAGGCAACCCCTCTCGCC 62.785 72.222 0.00 0.00 44.09 5.54
400 428 2.561984 GGGAATGGTTTGGGAGGGAAAT 60.562 50.000 0.00 0.00 0.00 2.17
451 479 1.838073 TTCCCCTTTCCTCGTGCTCC 61.838 60.000 0.00 0.00 0.00 4.70
532 560 3.256704 ACCTTGGAACATCAGGAACCTA 58.743 45.455 0.00 0.00 39.30 3.08
555 583 3.431207 GCATGGGGAATGAGGTTCAATTG 60.431 47.826 0.00 0.00 38.72 2.32
594 622 5.811399 ATACAAAAGCGGAATGAATCGAA 57.189 34.783 0.00 0.00 0.00 3.71
605 633 2.432444 TGACTGGGAATACAAAAGCGG 58.568 47.619 0.00 0.00 0.00 5.52
671 702 2.468831 CAATTCCCACCACACAAAACG 58.531 47.619 0.00 0.00 0.00 3.60
672 703 2.158971 AGCAATTCCCACCACACAAAAC 60.159 45.455 0.00 0.00 0.00 2.43
823 905 7.617041 ACAGCTTAACATATCAAGGAAGTTC 57.383 36.000 0.00 0.00 0.00 3.01
852 934 1.102154 GAGCAGCAGAGCTAGACTGA 58.898 55.000 17.49 0.00 46.75 3.41
985 1068 6.100424 ACCTCTTCCATCTTTTCGATAGGATT 59.900 38.462 0.00 0.00 32.82 3.01
999 1082 4.855340 TGGTATTTTCCACCTCTTCCATC 58.145 43.478 0.00 0.00 36.96 3.51
1086 1169 4.074526 GAGCCAGGCAGCGACTGA 62.075 66.667 15.80 0.00 42.14 3.41
1113 1196 4.052229 CGGGCGAGGTTCTGACGT 62.052 66.667 0.00 0.00 0.00 4.34
1167 1250 2.093658 GGCCTCGTCCTTAGACAAATCA 60.094 50.000 0.00 0.00 43.73 2.57
1443 1526 2.229784 GCCAACATCAGAAAACTCCTGG 59.770 50.000 0.00 0.00 32.73 4.45
1464 1547 2.669924 CGTGACATCACCAGTCATCAAG 59.330 50.000 6.44 0.00 46.52 3.02
1535 1618 2.897969 TCGGAACCCCTATAGAGCATTC 59.102 50.000 0.00 0.00 0.00 2.67
2123 2207 3.824443 TCCCTAGTTTTTAAAGCCAGCAC 59.176 43.478 0.00 0.00 0.00 4.40
2134 2218 7.004086 TGAGACATGAATGTTCCCTAGTTTTT 58.996 34.615 0.00 0.00 41.95 1.94
2163 2248 8.743085 ACAGCTAAACAGTGAATATCATCAAT 57.257 30.769 0.00 0.00 0.00 2.57
2224 2310 9.017509 GCAATCATCAGAATTAATCAGGGATAA 57.982 33.333 0.00 0.00 0.00 1.75
2240 2326 6.735130 TCATCTGCAAATTAGCAATCATCAG 58.265 36.000 0.00 0.00 45.13 2.90
2398 2486 5.927030 TCGCTTAAACAGAAAATAGCACTG 58.073 37.500 0.00 0.00 37.62 3.66
2579 2667 2.413634 GGGACAATGAGGTTAAAACGCG 60.414 50.000 3.53 3.53 0.00 6.01
2583 2671 5.300792 GTCAAGTGGGACAATGAGGTTAAAA 59.699 40.000 0.00 0.00 44.16 1.52
2596 2684 7.506328 AAATAAGTTTAGTGTCAAGTGGGAC 57.494 36.000 0.00 0.00 38.29 4.46
2649 2738 8.485578 AATAGAAGTCCCTTTGAGGAGTATAG 57.514 38.462 0.00 0.00 38.72 1.31
2897 2990 4.697352 GCCTGACTTCACTTCATGTACATT 59.303 41.667 5.37 0.00 0.00 2.71
2944 3037 5.685728 AGAAGGGCTTGTACATTCTATTCC 58.314 41.667 6.84 0.00 0.00 3.01
2982 3077 7.389053 GCTCTTCCACTCATCTAGAAAGAAAAA 59.611 37.037 11.38 3.29 34.73 1.94
3061 3156 3.368531 GGAAGACTACACAGCCTTACCTG 60.369 52.174 0.00 0.00 38.78 4.00
3131 3229 4.419522 AAGACATACAAATTCCACGCAC 57.580 40.909 0.00 0.00 0.00 5.34
3135 3233 9.431887 TGTAGTAGAAAGACATACAAATTCCAC 57.568 33.333 0.00 0.00 0.00 4.02
3157 3377 9.199982 GGGATGCATTTGATCAAATTATTGTAG 57.800 33.333 27.30 16.65 38.84 2.74
3221 3441 3.910989 AGTAATGGAAAGGGGTTATGCC 58.089 45.455 0.00 0.00 0.00 4.40
3222 3442 6.775629 TGATAAGTAATGGAAAGGGGTTATGC 59.224 38.462 0.00 0.00 0.00 3.14
3223 3443 8.940397 ATGATAAGTAATGGAAAGGGGTTATG 57.060 34.615 0.00 0.00 0.00 1.90
3225 3445 9.856162 GTTATGATAAGTAATGGAAAGGGGTTA 57.144 33.333 0.00 0.00 0.00 2.85
3226 3446 7.501225 CGTTATGATAAGTAATGGAAAGGGGTT 59.499 37.037 0.00 0.00 0.00 4.11
3227 3447 6.996282 CGTTATGATAAGTAATGGAAAGGGGT 59.004 38.462 0.00 0.00 0.00 4.95
3228 3448 6.430000 CCGTTATGATAAGTAATGGAAAGGGG 59.570 42.308 0.00 0.00 39.51 4.79
3229 3449 7.221450 TCCGTTATGATAAGTAATGGAAAGGG 58.779 38.462 4.75 0.00 41.76 3.95
3230 3450 8.671384 TTCCGTTATGATAAGTAATGGAAAGG 57.329 34.615 14.10 0.00 46.45 3.11
3234 3454 8.564574 GCAATTTCCGTTATGATAAGTAATGGA 58.435 33.333 3.38 3.38 42.55 3.41
3235 3455 8.349245 TGCAATTTCCGTTATGATAAGTAATGG 58.651 33.333 0.00 0.00 38.83 3.16
3236 3456 9.385902 CTGCAATTTCCGTTATGATAAGTAATG 57.614 33.333 0.00 0.00 0.00 1.90
3237 3457 9.120538 ACTGCAATTTCCGTTATGATAAGTAAT 57.879 29.630 0.00 0.00 0.00 1.89
3238 3458 8.500753 ACTGCAATTTCCGTTATGATAAGTAA 57.499 30.769 0.00 0.00 0.00 2.24
3239 3459 8.394877 CAACTGCAATTTCCGTTATGATAAGTA 58.605 33.333 0.00 0.00 0.00 2.24
3240 3460 7.094377 ACAACTGCAATTTCCGTTATGATAAGT 60.094 33.333 0.00 0.00 0.00 2.24
3241 3461 7.250569 ACAACTGCAATTTCCGTTATGATAAG 58.749 34.615 0.00 0.00 0.00 1.73
3242 3462 7.120579 AGACAACTGCAATTTCCGTTATGATAA 59.879 33.333 0.00 0.00 0.00 1.75
3243 3463 6.597672 AGACAACTGCAATTTCCGTTATGATA 59.402 34.615 0.00 0.00 0.00 2.15
3244 3464 5.415701 AGACAACTGCAATTTCCGTTATGAT 59.584 36.000 0.00 0.00 0.00 2.45
3245 3465 4.759693 AGACAACTGCAATTTCCGTTATGA 59.240 37.500 0.00 0.00 0.00 2.15
3246 3466 5.046910 AGACAACTGCAATTTCCGTTATG 57.953 39.130 0.00 0.00 0.00 1.90
3247 3467 5.705609 AAGACAACTGCAATTTCCGTTAT 57.294 34.783 0.00 0.00 0.00 1.89
3248 3468 5.298276 AGAAAGACAACTGCAATTTCCGTTA 59.702 36.000 0.00 0.00 31.69 3.18
3249 3469 4.097892 AGAAAGACAACTGCAATTTCCGTT 59.902 37.500 0.00 0.00 31.69 4.44
3250 3470 3.632145 AGAAAGACAACTGCAATTTCCGT 59.368 39.130 0.00 0.00 31.69 4.69
3251 3471 3.976942 CAGAAAGACAACTGCAATTTCCG 59.023 43.478 0.00 0.00 31.69 4.30
3290 3511 8.630054 AAAGCAGTAATCAGTTACCACATTTA 57.370 30.769 0.00 0.00 40.88 1.40
3346 3567 7.390440 CCAAAATCAGAACCATGACTACAAGTA 59.610 37.037 0.00 0.00 30.46 2.24
3515 5113 5.009811 ACACAACTACTGAGGTGAGAACTAC 59.990 44.000 0.00 0.00 43.81 2.73
3528 5128 6.851222 AATGACTCTTCAACACAACTACTG 57.149 37.500 0.00 0.00 34.61 2.74
3544 5144 7.029563 ACAACTTCAACAGAACAAAATGACTC 58.970 34.615 0.00 0.00 0.00 3.36
3545 5145 6.924111 ACAACTTCAACAGAACAAAATGACT 58.076 32.000 0.00 0.00 0.00 3.41
3603 5208 9.709600 GCTAAGTAAAGCTTGTTATGAGAATTC 57.290 33.333 0.00 0.00 39.50 2.17
3759 5386 8.345565 AGAATCACGGTATGCAAAATAAATCTC 58.654 33.333 0.00 0.00 0.00 2.75
3772 5399 5.733226 TGTTGCATAAGAATCACGGTATG 57.267 39.130 0.00 0.00 0.00 2.39
3775 5402 7.361201 GCATATATGTTGCATAAGAATCACGGT 60.361 37.037 14.14 0.00 39.90 4.83
3802 5429 3.447742 AGCACAACACAAAAGCTTTAGC 58.552 40.909 13.10 6.86 42.49 3.09
4076 5707 8.303780 TGGCATTCAAAAGGATATGTCATAAA 57.696 30.769 0.00 0.00 29.68 1.40
4078 5709 7.894753 TTGGCATTCAAAAGGATATGTCATA 57.105 32.000 0.00 0.00 32.58 2.15
4107 5738 1.068954 CCTGAAAAGCAACGGAAGCTC 60.069 52.381 0.00 0.00 42.53 4.09
4115 5746 2.671070 CGGGTAATGCCTGAAAAGCAAC 60.671 50.000 0.00 0.00 46.81 4.17
4135 5766 5.120830 CCTTGTAATCTTCTGAACCACTTCG 59.879 44.000 0.00 0.00 0.00 3.79
4451 6121 9.944376 AACAGAAATACACAGTATTCATAGTGT 57.056 29.630 0.00 0.00 45.24 3.55
4456 6126 9.671279 TGATGAACAGAAATACACAGTATTCAT 57.329 29.630 3.16 0.00 37.06 2.57
4457 6127 9.671279 ATGATGAACAGAAATACACAGTATTCA 57.329 29.630 3.16 0.00 0.00 2.57
4462 6132 8.299570 GGAAAATGATGAACAGAAATACACAGT 58.700 33.333 0.00 0.00 0.00 3.55
4463 6133 8.517878 AGGAAAATGATGAACAGAAATACACAG 58.482 33.333 0.00 0.00 0.00 3.66
4480 6153 7.673180 AGCAATTCATCAAAGAAGGAAAATGA 58.327 30.769 0.00 0.00 0.00 2.57
4484 6157 7.274447 ACAAAGCAATTCATCAAAGAAGGAAA 58.726 30.769 0.00 0.00 0.00 3.13
4485 6158 6.819284 ACAAAGCAATTCATCAAAGAAGGAA 58.181 32.000 0.00 0.00 0.00 3.36
4486 6159 6.409524 ACAAAGCAATTCATCAAAGAAGGA 57.590 33.333 0.00 0.00 0.00 3.36
4487 6160 8.653338 CATAACAAAGCAATTCATCAAAGAAGG 58.347 33.333 0.00 0.00 0.00 3.46
4735 6418 1.153765 CGCAATCCGCTCTCACTCA 60.154 57.895 0.00 0.00 39.08 3.41
4823 6516 8.209917 AGATAAACGACCACAATAAAATCCTC 57.790 34.615 0.00 0.00 0.00 3.71
4865 6562 7.309194 GGGCCAACGCTAAATGAGAATAATAAT 60.309 37.037 4.39 0.00 34.44 1.28
4900 6597 9.624697 TGCAAATATCTGAACATTAGTCAAAAC 57.375 29.630 0.00 0.00 0.00 2.43
4948 6645 2.691409 TGCTGCTTAGACCACATACC 57.309 50.000 0.00 0.00 0.00 2.73
4991 6688 1.153066 TTGCTTCAGGTGGTCGCAA 60.153 52.632 0.00 0.00 38.16 4.85
5062 6759 6.127730 CCGTAATTGGATTTAGCTTTGGAAGT 60.128 38.462 0.00 0.00 0.00 3.01
5075 6772 6.150474 AGACGAATTTTCACCGTAATTGGATT 59.850 34.615 0.00 0.00 36.60 3.01
5097 6794 9.989869 GAACTTAAAAGAGGCATTATGTAAGAC 57.010 33.333 0.00 0.00 0.00 3.01
5118 6815 9.593134 TTGTAGTGCAAAATTAACAATGAACTT 57.407 25.926 0.00 0.00 33.70 2.66
5124 6821 8.634444 TGGTACTTGTAGTGCAAAATTAACAAT 58.366 29.630 0.00 0.00 36.53 2.71
5200 7178 5.705609 ATGTACATCCAAAACCTGACAAC 57.294 39.130 1.41 0.00 0.00 3.32
5209 7187 5.009631 AGCTGTGCTAATGTACATCCAAAA 58.990 37.500 9.23 0.00 38.09 2.44
5213 7191 4.054671 GAGAGCTGTGCTAATGTACATCC 58.945 47.826 9.23 1.67 39.88 3.51
5256 7234 3.367025 GGACGATGTACTGAGGAAAAACG 59.633 47.826 0.00 0.00 0.00 3.60
5290 7268 2.030805 AGCATTTGTTTTCTCCGTCTGC 60.031 45.455 0.00 0.00 0.00 4.26
5336 7314 4.222810 TGCAGACTAGAAATAAGCAGGTGA 59.777 41.667 0.00 0.00 0.00 4.02
5407 7388 4.134563 ACTGGACCAACTAAATGTGACAC 58.865 43.478 0.00 0.00 0.00 3.67
5457 7506 3.197766 TCGCTTTAGGATGACAGGTGATT 59.802 43.478 0.00 0.00 0.00 2.57
5597 7647 4.003648 CCTTATGAAGTGGGTGAGAACAC 58.996 47.826 0.00 0.00 45.27 3.32
5754 7809 9.414295 CTTTAGTTGCTGAATTTCATGATTCAA 57.586 29.630 11.79 0.00 43.35 2.69
5822 7877 8.253113 CCATTTAGCTGTTTAACAAGGATCAAT 58.747 33.333 0.00 0.00 0.00 2.57
5848 7905 5.188434 TGAATGATGGAGAATGTGAGAACC 58.812 41.667 0.00 0.00 0.00 3.62
5864 7924 8.593945 TCCCTAAATTTTTGTAGCTGAATGAT 57.406 30.769 0.00 0.00 0.00 2.45
5865 7925 8.469200 CATCCCTAAATTTTTGTAGCTGAATGA 58.531 33.333 0.00 0.00 0.00 2.57
5923 7983 1.768275 TCCGCATCAATATGACCCAGT 59.232 47.619 0.00 0.00 34.84 4.00
6005 8065 8.448615 GGTACCATTAAACATAAGTTCAGTGAC 58.551 37.037 7.15 0.00 36.84 3.67
6173 8237 2.679837 CAGGCGTATTTGCTCACTTGAT 59.320 45.455 0.00 0.00 34.52 2.57
6242 8306 3.467803 AGTATGCACCTCGGCTATTTTC 58.532 45.455 0.00 0.00 34.04 2.29
6251 8315 4.180817 TGATACAACAAGTATGCACCTCG 58.819 43.478 0.00 0.00 43.39 4.63
6299 8375 1.494721 TCCCAATCAAGCATAGGGACC 59.505 52.381 0.00 0.00 43.39 4.46
6506 8589 9.827198 ATTGGAAATAAGATATCTTAATGCCCA 57.173 29.630 25.76 23.74 41.27 5.36
6548 8632 5.867716 TCAGATGTCGAGATTATGCATGATG 59.132 40.000 8.95 0.00 0.00 3.07
6618 8703 9.520515 AAATGTTTCAGGACTCTACACATAATT 57.479 29.630 0.00 0.00 0.00 1.40
6766 8853 6.601613 CCAAGTGATTTTAGTAATAGTGCCCA 59.398 38.462 0.00 0.00 0.00 5.36
6814 8901 6.919721 TGCACTTTAAGTCAAATGGGATAAC 58.080 36.000 0.00 0.00 0.00 1.89
6853 8941 6.607970 TCTAATGGATCAATCAAAGGCAGAT 58.392 36.000 0.00 0.00 0.00 2.90
7058 9901 4.956075 AGAAAAGGCCAAAGAAGAAAGTCA 59.044 37.500 5.01 0.00 0.00 3.41
7073 9916 0.671472 GTTGGGCATGCAGAAAAGGC 60.671 55.000 21.36 0.00 0.00 4.35
7162 10006 5.462068 GGCAAACAAATTAAGTCAGTTGGTC 59.538 40.000 0.00 0.00 0.00 4.02
7305 10149 4.040461 ACTGTATGTTACAACTGCTGGAGT 59.960 41.667 0.00 0.00 38.38 3.85
7445 10290 7.930217 TCGAAAATAAAATGCCTGGATAAGAG 58.070 34.615 0.00 0.00 0.00 2.85
7467 10312 3.055167 TCTCAATGCCTGGAGAATTTCGA 60.055 43.478 0.00 0.00 37.23 3.71
7468 10313 3.064545 GTCTCAATGCCTGGAGAATTTCG 59.935 47.826 0.00 0.00 41.48 3.46
7820 11159 7.169158 AGGTTCACAAAATTGAAGAAGTTCA 57.831 32.000 5.50 0.00 41.13 3.18
7821 11160 8.479313 AAAGGTTCACAAAATTGAAGAAGTTC 57.521 30.769 0.00 0.00 36.15 3.01
7822 11161 8.846943 AAAAGGTTCACAAAATTGAAGAAGTT 57.153 26.923 0.00 0.00 36.15 2.66
7823 11162 8.846943 AAAAAGGTTCACAAAATTGAAGAAGT 57.153 26.923 0.00 0.00 36.15 3.01
7849 11188 6.875948 TTTGAAGAAAGTCCATCGATTTCA 57.124 33.333 10.22 6.12 35.79 2.69
7850 11189 8.642020 CAAATTTGAAGAAAGTCCATCGATTTC 58.358 33.333 13.08 0.00 33.97 2.17
8014 11367 5.147330 ACTGATCAAACGTTGACCTATGA 57.853 39.130 0.00 0.24 43.48 2.15
8015 11368 4.929211 TGACTGATCAAACGTTGACCTATG 59.071 41.667 0.00 0.00 43.48 2.23
8017 11370 4.594123 TGACTGATCAAACGTTGACCTA 57.406 40.909 0.00 0.00 43.48 3.08
8033 11386 0.776451 CTTCGTTCGACCGTTGACTG 59.224 55.000 1.29 0.00 0.00 3.51
8034 11387 0.938168 GCTTCGTTCGACCGTTGACT 60.938 55.000 1.29 0.00 0.00 3.41
8037 11390 0.998226 TACGCTTCGTTCGACCGTTG 60.998 55.000 19.16 0.00 41.54 4.10
8041 11394 4.766969 AAAATATACGCTTCGTTCGACC 57.233 40.909 0.00 0.00 41.54 4.79
8079 11440 0.159554 CGTATGTATGAGCGCTTGCG 59.840 55.000 13.26 10.90 45.69 4.85
8099 11460 3.430236 CGTTCATAGGGTGAGTGTATGCA 60.430 47.826 0.00 0.00 38.29 3.96
8111 11472 2.798501 CGTGCGTGCGTTCATAGGG 61.799 63.158 0.00 0.00 0.00 3.53
8120 11481 3.178592 TAGATGTGCGTGCGTGCG 61.179 61.111 0.00 0.00 37.81 5.34
8125 11486 2.034685 TCATAGAGGTAGATGTGCGTGC 59.965 50.000 0.00 0.00 0.00 5.34
8131 11492 4.191804 AGGTGCTCATAGAGGTAGATGT 57.808 45.455 0.00 0.00 0.00 3.06
8134 11495 3.118000 TCGAAGGTGCTCATAGAGGTAGA 60.118 47.826 0.00 0.00 0.00 2.59
8135 11496 3.215151 TCGAAGGTGCTCATAGAGGTAG 58.785 50.000 0.00 0.00 0.00 3.18
8136 11497 3.118000 TCTCGAAGGTGCTCATAGAGGTA 60.118 47.826 6.17 0.00 0.00 3.08
8137 11498 2.028130 CTCGAAGGTGCTCATAGAGGT 58.972 52.381 0.00 0.00 0.00 3.85
8138 11499 2.293122 CTCTCGAAGGTGCTCATAGAGG 59.707 54.545 6.17 0.00 0.00 3.69
8139 11500 3.210227 TCTCTCGAAGGTGCTCATAGAG 58.790 50.000 0.00 0.00 31.13 2.43
8140 11501 3.283259 TCTCTCGAAGGTGCTCATAGA 57.717 47.619 0.00 0.00 0.00 1.98
8141 11502 4.037327 TCAATCTCTCGAAGGTGCTCATAG 59.963 45.833 0.00 0.00 0.00 2.23
8142 11503 3.954258 TCAATCTCTCGAAGGTGCTCATA 59.046 43.478 0.00 0.00 0.00 2.15
8143 11504 2.762887 TCAATCTCTCGAAGGTGCTCAT 59.237 45.455 0.00 0.00 0.00 2.90
8144 11505 2.165234 CTCAATCTCTCGAAGGTGCTCA 59.835 50.000 0.00 0.00 0.00 4.26
8145 11506 2.808244 CTCAATCTCTCGAAGGTGCTC 58.192 52.381 0.00 0.00 0.00 4.26
8146 11507 1.134848 GCTCAATCTCTCGAAGGTGCT 60.135 52.381 0.00 0.00 0.00 4.40
8147 11508 1.285578 GCTCAATCTCTCGAAGGTGC 58.714 55.000 0.00 0.00 0.00 5.01
8148 11509 1.800655 CGGCTCAATCTCTCGAAGGTG 60.801 57.143 0.00 0.00 0.00 4.00
8149 11510 0.457851 CGGCTCAATCTCTCGAAGGT 59.542 55.000 0.00 0.00 0.00 3.50
8150 11511 0.249238 CCGGCTCAATCTCTCGAAGG 60.249 60.000 0.00 0.00 0.00 3.46
8151 11512 0.873743 GCCGGCTCAATCTCTCGAAG 60.874 60.000 22.15 0.00 0.00 3.79
8152 11513 1.141881 GCCGGCTCAATCTCTCGAA 59.858 57.895 22.15 0.00 0.00 3.71
8153 11514 1.395045 ATGCCGGCTCAATCTCTCGA 61.395 55.000 29.70 1.81 0.00 4.04
8154 11515 0.315251 TATGCCGGCTCAATCTCTCG 59.685 55.000 29.70 0.00 0.00 4.04
8155 11516 2.028658 TGATATGCCGGCTCAATCTCTC 60.029 50.000 29.70 12.76 0.00 3.20
8156 11517 1.973515 TGATATGCCGGCTCAATCTCT 59.026 47.619 29.70 3.16 0.00 3.10
8157 11518 2.462456 TGATATGCCGGCTCAATCTC 57.538 50.000 29.70 15.07 0.00 2.75
8158 11519 2.570752 AGATGATATGCCGGCTCAATCT 59.429 45.455 29.70 22.78 0.00 2.40
8159 11520 2.983229 AGATGATATGCCGGCTCAATC 58.017 47.619 29.70 24.84 0.00 2.67
8160 11521 3.079578 CAAGATGATATGCCGGCTCAAT 58.920 45.455 29.70 17.87 0.00 2.57
8161 11522 2.104622 TCAAGATGATATGCCGGCTCAA 59.895 45.455 29.70 13.42 0.00 3.02
8162 11523 1.693606 TCAAGATGATATGCCGGCTCA 59.306 47.619 29.70 23.34 0.00 4.26
8163 11524 2.028658 TCTCAAGATGATATGCCGGCTC 60.029 50.000 29.70 17.89 0.00 4.70
8164 11525 1.973515 TCTCAAGATGATATGCCGGCT 59.026 47.619 29.70 15.76 0.00 5.52
8165 11526 2.462456 TCTCAAGATGATATGCCGGC 57.538 50.000 22.73 22.73 0.00 6.13
8166 11527 6.820152 TCATAAATCTCAAGATGATATGCCGG 59.180 38.462 0.00 0.00 36.32 6.13
8167 11528 7.838771 TCATAAATCTCAAGATGATATGCCG 57.161 36.000 15.00 0.00 36.32 5.69
8168 11529 9.228949 ACTTCATAAATCTCAAGATGATATGCC 57.771 33.333 15.00 0.00 36.32 4.40
8173 11534 9.327628 CAGTGACTTCATAAATCTCAAGATGAT 57.672 33.333 0.00 0.00 34.49 2.45
8174 11535 8.316946 ACAGTGACTTCATAAATCTCAAGATGA 58.683 33.333 0.00 0.00 34.49 2.92
8175 11536 8.489990 ACAGTGACTTCATAAATCTCAAGATG 57.510 34.615 0.00 0.00 34.49 2.90
8176 11537 9.814899 CTACAGTGACTTCATAAATCTCAAGAT 57.185 33.333 0.00 0.00 36.07 2.40
8177 11538 8.253810 CCTACAGTGACTTCATAAATCTCAAGA 58.746 37.037 0.00 0.00 0.00 3.02
8178 11539 7.010923 GCCTACAGTGACTTCATAAATCTCAAG 59.989 40.741 0.00 0.00 0.00 3.02
8179 11540 6.818644 GCCTACAGTGACTTCATAAATCTCAA 59.181 38.462 0.00 0.00 0.00 3.02
8180 11541 6.341316 GCCTACAGTGACTTCATAAATCTCA 58.659 40.000 0.00 0.00 0.00 3.27
8181 11542 5.460419 CGCCTACAGTGACTTCATAAATCTC 59.540 44.000 0.00 0.00 0.00 2.75
8182 11543 5.352284 CGCCTACAGTGACTTCATAAATCT 58.648 41.667 0.00 0.00 0.00 2.40
8183 11544 4.025647 GCGCCTACAGTGACTTCATAAATC 60.026 45.833 0.00 0.00 0.00 2.17
8184 11545 3.871594 GCGCCTACAGTGACTTCATAAAT 59.128 43.478 0.00 0.00 0.00 1.40
8185 11546 3.259064 GCGCCTACAGTGACTTCATAAA 58.741 45.455 0.00 0.00 0.00 1.40
8186 11547 2.418197 GGCGCCTACAGTGACTTCATAA 60.418 50.000 22.15 0.00 0.00 1.90
8187 11548 1.136305 GGCGCCTACAGTGACTTCATA 59.864 52.381 22.15 0.00 0.00 2.15
8188 11549 0.108138 GGCGCCTACAGTGACTTCAT 60.108 55.000 22.15 0.00 0.00 2.57
8189 11550 1.185618 AGGCGCCTACAGTGACTTCA 61.186 55.000 31.86 0.00 44.04 3.02
8190 11551 1.592223 AGGCGCCTACAGTGACTTC 59.408 57.895 31.86 0.00 44.04 3.01
8191 11552 3.793060 AGGCGCCTACAGTGACTT 58.207 55.556 31.86 0.00 44.04 3.01
8193 11554 2.184579 GGAGGCGCCTACAGTGAC 59.815 66.667 34.40 17.23 0.00 3.67
8204 11565 1.717937 CTTTCAATGCGAGGAGGCG 59.282 57.895 0.00 0.00 35.06 5.52
8205 11566 1.431036 GCTTTCAATGCGAGGAGGC 59.569 57.895 0.00 0.00 0.00 4.70
8223 11584 4.592192 AGGATGTCCGGCGATGCG 62.592 66.667 9.30 0.00 42.08 4.73
8224 11585 2.969238 CAGGATGTCCGGCGATGC 60.969 66.667 9.30 0.00 42.08 3.91
8225 11586 1.592669 GTCAGGATGTCCGGCGATG 60.593 63.158 9.30 0.00 42.08 3.84
8226 11587 1.402896 ATGTCAGGATGTCCGGCGAT 61.403 55.000 9.30 0.00 42.08 4.58
8227 11588 0.753848 TATGTCAGGATGTCCGGCGA 60.754 55.000 9.30 0.00 42.08 5.54
8228 11589 0.104120 TTATGTCAGGATGTCCGGCG 59.896 55.000 0.00 0.00 42.08 6.46
8229 11590 2.325583 TTTATGTCAGGATGTCCGGC 57.674 50.000 0.00 0.00 42.08 6.13
8230 11591 4.342862 AGATTTATGTCAGGATGTCCGG 57.657 45.455 0.00 0.00 42.08 5.14
8231 11592 5.243954 TCCTAGATTTATGTCAGGATGTCCG 59.756 44.000 0.00 0.00 42.08 4.79
8232 11593 6.672266 TCCTAGATTTATGTCAGGATGTCC 57.328 41.667 0.00 0.00 37.40 4.02
8236 11597 9.678260 GCATTATTCCTAGATTTATGTCAGGAT 57.322 33.333 0.00 0.00 35.40 3.24
8237 11598 7.819415 CGCATTATTCCTAGATTTATGTCAGGA 59.181 37.037 0.00 0.00 33.59 3.86
8238 11599 7.819415 TCGCATTATTCCTAGATTTATGTCAGG 59.181 37.037 0.00 0.00 0.00 3.86
8239 11600 8.763049 TCGCATTATTCCTAGATTTATGTCAG 57.237 34.615 0.00 0.00 0.00 3.51
8240 11601 7.331934 GCTCGCATTATTCCTAGATTTATGTCA 59.668 37.037 0.00 0.00 0.00 3.58
8241 11602 7.331934 TGCTCGCATTATTCCTAGATTTATGTC 59.668 37.037 0.00 0.00 0.00 3.06
8242 11603 7.161404 TGCTCGCATTATTCCTAGATTTATGT 58.839 34.615 0.00 0.00 0.00 2.29
8243 11604 7.601073 TGCTCGCATTATTCCTAGATTTATG 57.399 36.000 0.00 0.00 0.00 1.90
8244 11605 8.043113 TGATGCTCGCATTATTCCTAGATTTAT 58.957 33.333 5.79 0.00 36.70 1.40
8245 11606 7.386059 TGATGCTCGCATTATTCCTAGATTTA 58.614 34.615 5.79 0.00 36.70 1.40
8246 11607 6.233434 TGATGCTCGCATTATTCCTAGATTT 58.767 36.000 5.79 0.00 36.70 2.17
8247 11608 5.798132 TGATGCTCGCATTATTCCTAGATT 58.202 37.500 5.79 0.00 36.70 2.40
8248 11609 5.411831 TGATGCTCGCATTATTCCTAGAT 57.588 39.130 5.79 0.00 36.70 1.98
8249 11610 4.322273 CCTGATGCTCGCATTATTCCTAGA 60.322 45.833 5.79 0.00 36.70 2.43
8250 11611 3.931468 CCTGATGCTCGCATTATTCCTAG 59.069 47.826 5.79 0.00 36.70 3.02
8251 11612 3.306989 CCCTGATGCTCGCATTATTCCTA 60.307 47.826 5.79 0.00 36.70 2.94
8252 11613 2.551721 CCCTGATGCTCGCATTATTCCT 60.552 50.000 5.79 0.00 36.70 3.36
8253 11614 1.808945 CCCTGATGCTCGCATTATTCC 59.191 52.381 5.79 0.00 36.70 3.01
8254 11615 2.498167 ACCCTGATGCTCGCATTATTC 58.502 47.619 5.79 0.00 36.70 1.75
8255 11616 2.645838 ACCCTGATGCTCGCATTATT 57.354 45.000 5.79 0.00 36.70 1.40
8256 11617 2.645838 AACCCTGATGCTCGCATTAT 57.354 45.000 5.79 0.00 36.70 1.28
8257 11618 3.769739 ATAACCCTGATGCTCGCATTA 57.230 42.857 5.79 0.89 36.70 1.90
8258 11619 2.645838 ATAACCCTGATGCTCGCATT 57.354 45.000 5.79 0.00 36.70 3.56
8259 11620 2.289694 GGTATAACCCTGATGCTCGCAT 60.290 50.000 3.70 3.70 33.75 4.73
8260 11621 1.070134 GGTATAACCCTGATGCTCGCA 59.930 52.381 0.00 0.00 30.04 5.10
8261 11622 1.070134 TGGTATAACCCTGATGCTCGC 59.930 52.381 0.00 0.00 37.50 5.03
8262 11623 2.365617 AGTGGTATAACCCTGATGCTCG 59.634 50.000 0.00 0.00 37.50 5.03
8263 11624 3.134804 ACAGTGGTATAACCCTGATGCTC 59.865 47.826 7.30 0.00 38.20 4.26
8264 11625 3.115390 ACAGTGGTATAACCCTGATGCT 58.885 45.455 7.30 0.00 38.20 3.79
8265 11626 3.467803 GACAGTGGTATAACCCTGATGC 58.532 50.000 7.30 0.00 38.20 3.91
8266 11627 3.181454 GGGACAGTGGTATAACCCTGATG 60.181 52.174 7.30 4.35 38.20 3.07
8267 11628 3.046374 GGGACAGTGGTATAACCCTGAT 58.954 50.000 7.30 0.00 38.20 2.90
8268 11629 2.225675 TGGGACAGTGGTATAACCCTGA 60.226 50.000 7.30 0.00 38.20 3.86
8269 11630 2.093128 GTGGGACAGTGGTATAACCCTG 60.093 54.545 0.00 0.00 41.80 4.45
8270 11631 2.193993 GTGGGACAGTGGTATAACCCT 58.806 52.381 0.00 0.00 41.80 4.34
8271 11632 2.193993 AGTGGGACAGTGGTATAACCC 58.806 52.381 0.00 0.00 42.47 4.11
8272 11633 4.383444 GGTTAGTGGGACAGTGGTATAACC 60.383 50.000 0.00 1.23 44.58 2.85
8273 11634 4.223477 TGGTTAGTGGGACAGTGGTATAAC 59.777 45.833 0.00 0.00 44.58 1.89
8274 11635 4.427637 TGGTTAGTGGGACAGTGGTATAA 58.572 43.478 0.00 0.00 44.58 0.98
8275 11636 4.063851 TGGTTAGTGGGACAGTGGTATA 57.936 45.455 0.00 0.00 44.58 1.47
8276 11637 2.910544 TGGTTAGTGGGACAGTGGTAT 58.089 47.619 0.00 0.00 44.58 2.73
8277 11638 2.402182 TGGTTAGTGGGACAGTGGTA 57.598 50.000 0.00 0.00 44.58 3.25
8278 11639 1.628846 GATGGTTAGTGGGACAGTGGT 59.371 52.381 0.00 0.00 44.58 4.16
8279 11640 1.065418 GGATGGTTAGTGGGACAGTGG 60.065 57.143 0.00 0.00 44.58 4.00
8280 11641 2.403252 GGATGGTTAGTGGGACAGTG 57.597 55.000 0.00 0.00 44.58 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.