Multiple sequence alignment - TraesCS4D01G091000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G091000 chr4D 100.000 9743 0 0 1 9743 65948655 65938913 0.000000e+00 17993.0
1 TraesCS4D01G091000 chr4B 96.201 8213 216 36 838 8987 96650075 96641896 0.000000e+00 13350.0
2 TraesCS4D01G091000 chr4B 97.578 702 17 0 9042 9743 96641764 96641063 0.000000e+00 1203.0
3 TraesCS4D01G091000 chr4B 97.333 150 4 0 703 852 96650241 96650092 1.260000e-63 255.0
4 TraesCS4D01G091000 chr4B 91.061 179 16 0 423 601 96665624 96665446 9.780000e-60 243.0
5 TraesCS4D01G091000 chr4A 96.812 2227 62 5 624 2849 529618874 529621092 0.000000e+00 3711.0
6 TraesCS4D01G091000 chr4A 97.009 2173 45 9 7588 9743 529625114 529627283 0.000000e+00 3635.0
7 TraesCS4D01G091000 chr4A 97.049 1762 41 8 5641 7394 529623072 529624830 0.000000e+00 2955.0
8 TraesCS4D01G091000 chr4A 94.829 1373 51 10 2827 4194 529621274 529622631 0.000000e+00 2124.0
9 TraesCS4D01G091000 chr4A 90.703 1409 94 24 4241 5637 670852796 670854179 0.000000e+00 1842.0
10 TraesCS4D01G091000 chr4A 94.413 179 10 0 423 601 529618347 529618525 9.640000e-70 276.0
11 TraesCS4D01G091000 chr4A 95.732 164 6 1 7426 7589 529624828 529624990 7.500000e-66 263.0
12 TraesCS4D01G091000 chr7B 94.243 1407 67 8 4238 5637 161203595 161204994 0.000000e+00 2137.0
13 TraesCS4D01G091000 chr7B 93.433 1401 78 8 4244 5637 440794968 440796361 0.000000e+00 2065.0
14 TraesCS4D01G091000 chr7B 92.319 1354 89 9 4291 5637 33856443 33855098 0.000000e+00 1910.0
15 TraesCS4D01G091000 chr7B 100.000 33 0 0 388 420 40293674 40293642 2.940000e-05 62.1
16 TraesCS4D01G091000 chr5A 94.071 1400 68 9 4246 5637 11950500 11949108 0.000000e+00 2111.0
17 TraesCS4D01G091000 chr5A 90.476 42 3 1 382 423 680738112 680738072 5.000000e-03 54.7
18 TraesCS4D01G091000 chr7A 93.786 1400 70 10 4245 5637 494496769 494495380 0.000000e+00 2087.0
19 TraesCS4D01G091000 chr7A 93.714 1400 71 10 4245 5637 494460930 494459541 0.000000e+00 2082.0
20 TraesCS4D01G091000 chr7A 86.282 1334 162 16 4251 5574 69217639 69218961 0.000000e+00 1430.0
21 TraesCS4D01G091000 chr7A 81.651 109 17 1 2216 2321 47923504 47923612 4.850000e-13 87.9
22 TraesCS4D01G091000 chr3B 92.450 1404 92 8 4241 5637 161372799 161371403 0.000000e+00 1993.0
23 TraesCS4D01G091000 chr3B 91.304 46 3 1 376 420 22170568 22170613 2.940000e-05 62.1
24 TraesCS4D01G091000 chr3D 94.944 1068 42 6 4240 5302 313292353 313293413 0.000000e+00 1663.0
25 TraesCS4D01G091000 chr2D 94.614 427 19 1 1 423 618242631 618242205 0.000000e+00 658.0
26 TraesCS4D01G091000 chr1D 87.079 178 11 8 1 178 45069653 45069818 3.590000e-44 191.0
27 TraesCS4D01G091000 chr1D 86.517 178 12 8 1 178 44938199 44938364 1.670000e-42 185.0
28 TraesCS4D01G091000 chr1D 87.218 133 15 1 241 373 44938393 44938523 6.100000e-32 150.0
29 TraesCS4D01G091000 chr6D 97.297 37 0 1 385 420 158080797 158080833 2.940000e-05 62.1
30 TraesCS4D01G091000 chr1A 100.000 33 0 0 388 420 516312414 516312382 2.940000e-05 62.1
31 TraesCS4D01G091000 chr1A 100.000 33 0 0 388 420 561940399 561940367 2.940000e-05 62.1
32 TraesCS4D01G091000 chr5B 97.059 34 1 0 390 423 693674938 693674905 3.800000e-04 58.4
33 TraesCS4D01G091000 chr2B 96.970 33 1 0 388 420 795627734 795627702 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G091000 chr4D 65938913 65948655 9742 True 17993.000000 17993 100.000000 1 9743 1 chr4D.!!$R1 9742
1 TraesCS4D01G091000 chr4B 96641063 96650241 9178 True 4936.000000 13350 97.037333 703 9743 3 chr4B.!!$R2 9040
2 TraesCS4D01G091000 chr4A 529618347 529627283 8936 False 2160.666667 3711 95.974000 423 9743 6 chr4A.!!$F2 9320
3 TraesCS4D01G091000 chr4A 670852796 670854179 1383 False 1842.000000 1842 90.703000 4241 5637 1 chr4A.!!$F1 1396
4 TraesCS4D01G091000 chr7B 161203595 161204994 1399 False 2137.000000 2137 94.243000 4238 5637 1 chr7B.!!$F1 1399
5 TraesCS4D01G091000 chr7B 440794968 440796361 1393 False 2065.000000 2065 93.433000 4244 5637 1 chr7B.!!$F2 1393
6 TraesCS4D01G091000 chr7B 33855098 33856443 1345 True 1910.000000 1910 92.319000 4291 5637 1 chr7B.!!$R1 1346
7 TraesCS4D01G091000 chr5A 11949108 11950500 1392 True 2111.000000 2111 94.071000 4246 5637 1 chr5A.!!$R1 1391
8 TraesCS4D01G091000 chr7A 494495380 494496769 1389 True 2087.000000 2087 93.786000 4245 5637 1 chr7A.!!$R2 1392
9 TraesCS4D01G091000 chr7A 494459541 494460930 1389 True 2082.000000 2082 93.714000 4245 5637 1 chr7A.!!$R1 1392
10 TraesCS4D01G091000 chr7A 69217639 69218961 1322 False 1430.000000 1430 86.282000 4251 5574 1 chr7A.!!$F2 1323
11 TraesCS4D01G091000 chr3B 161371403 161372799 1396 True 1993.000000 1993 92.450000 4241 5637 1 chr3B.!!$R1 1396
12 TraesCS4D01G091000 chr3D 313292353 313293413 1060 False 1663.000000 1663 94.944000 4240 5302 1 chr3D.!!$F1 1062

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
327 328 0.035820 TAGACCGTGCATTGAACCCC 60.036 55.000 0.0 0.0 0.00 4.95 F
1266 1624 0.323178 TACGCTCCGACCTCTCCTTT 60.323 55.000 0.0 0.0 0.00 3.11 F
1752 2110 1.004918 CGTTGAGAGCTTCCGGGTT 60.005 57.895 0.0 0.0 0.00 4.11 F
2238 2596 1.133823 TGTGTCTTGTGCCCAATGTCT 60.134 47.619 0.0 0.0 0.00 3.41 F
2246 2607 1.220749 GCCCAATGTCTACGAGGCA 59.779 57.895 0.0 0.0 40.20 4.75 F
3922 4494 0.329596 GGCCTTGTGTTCTCTGGGAT 59.670 55.000 0.0 0.0 0.00 3.85 F
4464 5365 0.033405 TCTACCCCGACCTCTCTTGG 60.033 60.000 0.0 0.0 0.00 3.61 F
4585 5487 0.894835 CAATTGGTGCTACCCCAACC 59.105 55.000 0.0 0.0 44.36 3.77 F
5144 6056 0.984230 TCCCTTGTGACCTCATCCAC 59.016 55.000 0.0 0.0 0.00 4.02 F
5526 6454 1.227497 GCTCAATGGCTCTCTCCCG 60.227 63.158 0.0 0.0 0.00 5.14 F
5979 6911 1.781786 TAGCTGATGACCCAGAGGAC 58.218 55.000 0.0 0.0 36.29 3.85 F
7486 8448 1.526917 GGCCATCTAGCATTGCGGT 60.527 57.895 0.0 0.0 0.00 5.68 F
8479 9569 0.179150 CGAAGAGGAGGTGAAGAGCG 60.179 60.000 0.0 0.0 0.00 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1848 2206 1.076923 ACTCGCCTCCACCGTATCT 60.077 57.895 0.00 0.00 0.00 1.98 R
2380 2741 1.453155 AGGCTAGCCATGTTTCAACG 58.547 50.000 34.70 0.00 38.92 4.10 R
3496 4068 2.936919 TGAACAGAGACACCTGCATT 57.063 45.000 0.00 0.00 37.68 3.56 R
3922 4494 0.173935 CATAGGTACGCCCGTCACAA 59.826 55.000 0.00 0.00 38.74 3.33 R
4212 5108 4.843220 AGGTGAGATCAAGCAAAACAAG 57.157 40.909 0.00 0.00 0.00 3.16 R
5175 6088 0.824109 TAGGACTGCATCAAGGGTCG 59.176 55.000 0.00 0.00 0.00 4.79 R
5516 6444 1.036707 ATGAAGCTACGGGAGAGAGC 58.963 55.000 0.00 0.00 40.81 4.09 R
6393 7328 2.111384 CCTGTAGCATCACCTACACCT 58.889 52.381 0.00 0.00 41.89 4.00 R
6693 7628 2.949447 TCATCATCTCATCGGTCAGGA 58.051 47.619 0.00 0.00 0.00 3.86 R
7459 8421 1.051812 GCTAGATGGCCTGGCTCTTA 58.948 55.000 19.68 3.31 44.86 2.10 R
7863 8951 0.100503 GCTGACACCGCAAAACAACT 59.899 50.000 0.00 0.00 0.00 3.16 R
8595 9685 0.107831 CAAACCCGTCCAACTCCTCA 59.892 55.000 0.00 0.00 0.00 3.86 R
9296 10495 2.125753 GCTCGCTGTCCAGACCAG 60.126 66.667 0.00 0.00 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.193595 ACTTTCTTTGAACCTTTACATTGTCG 58.806 34.615 0.00 0.00 0.00 4.35
26 27 5.103290 TCTTTGAACCTTTACATTGTCGC 57.897 39.130 0.00 0.00 0.00 5.19
27 28 4.819630 TCTTTGAACCTTTACATTGTCGCT 59.180 37.500 0.00 0.00 0.00 4.93
28 29 5.992829 TCTTTGAACCTTTACATTGTCGCTA 59.007 36.000 0.00 0.00 0.00 4.26
29 30 6.653320 TCTTTGAACCTTTACATTGTCGCTAT 59.347 34.615 0.00 0.00 0.00 2.97
30 31 7.820386 TCTTTGAACCTTTACATTGTCGCTATA 59.180 33.333 0.00 0.00 0.00 1.31
31 32 8.500753 TTTGAACCTTTACATTGTCGCTATAT 57.499 30.769 0.00 0.00 0.00 0.86
32 33 9.602568 TTTGAACCTTTACATTGTCGCTATATA 57.397 29.630 0.00 0.00 0.00 0.86
33 34 9.602568 TTGAACCTTTACATTGTCGCTATATAA 57.397 29.630 0.00 0.00 0.00 0.98
34 35 9.602568 TGAACCTTTACATTGTCGCTATATAAA 57.397 29.630 0.00 0.00 0.00 1.40
48 49 9.651718 GTCGCTATATAAAAAGATTGTTTGAGG 57.348 33.333 0.00 0.00 0.00 3.86
49 50 8.836413 TCGCTATATAAAAAGATTGTTTGAGGG 58.164 33.333 0.00 0.00 0.00 4.30
50 51 8.836413 CGCTATATAAAAAGATTGTTTGAGGGA 58.164 33.333 0.00 0.00 0.00 4.20
56 57 9.764363 ATAAAAAGATTGTTTGAGGGAAAGTTC 57.236 29.630 0.00 0.00 0.00 3.01
57 58 7.423844 AAAAGATTGTTTGAGGGAAAGTTCT 57.576 32.000 0.00 0.00 0.00 3.01
58 59 7.423844 AAAGATTGTTTGAGGGAAAGTTCTT 57.576 32.000 0.00 0.00 0.00 2.52
59 60 6.641169 AGATTGTTTGAGGGAAAGTTCTTC 57.359 37.500 0.00 0.00 0.00 2.87
60 61 5.536538 AGATTGTTTGAGGGAAAGTTCTTCC 59.463 40.000 0.00 0.00 37.86 3.46
61 62 4.243793 TGTTTGAGGGAAAGTTCTTCCA 57.756 40.909 5.91 0.00 40.32 3.53
62 63 4.605183 TGTTTGAGGGAAAGTTCTTCCAA 58.395 39.130 5.91 0.00 40.32 3.53
63 64 5.208121 TGTTTGAGGGAAAGTTCTTCCAAT 58.792 37.500 5.91 0.00 40.32 3.16
64 65 5.660864 TGTTTGAGGGAAAGTTCTTCCAATT 59.339 36.000 5.91 0.00 40.32 2.32
65 66 6.836527 TGTTTGAGGGAAAGTTCTTCCAATTA 59.163 34.615 5.91 0.00 40.32 1.40
66 67 7.014230 TGTTTGAGGGAAAGTTCTTCCAATTAG 59.986 37.037 5.91 0.00 40.32 1.73
67 68 6.448369 TGAGGGAAAGTTCTTCCAATTAGA 57.552 37.500 5.91 0.00 40.32 2.10
68 69 7.032598 TGAGGGAAAGTTCTTCCAATTAGAT 57.967 36.000 5.91 0.00 40.32 1.98
69 70 7.470192 TGAGGGAAAGTTCTTCCAATTAGATT 58.530 34.615 5.91 0.00 40.32 2.40
70 71 7.394359 TGAGGGAAAGTTCTTCCAATTAGATTG 59.606 37.037 5.91 0.00 40.32 2.67
71 72 7.241628 AGGGAAAGTTCTTCCAATTAGATTGT 58.758 34.615 5.91 0.00 40.32 2.71
72 73 7.394641 AGGGAAAGTTCTTCCAATTAGATTGTC 59.605 37.037 5.91 0.00 40.32 3.18
73 74 7.176690 GGGAAAGTTCTTCCAATTAGATTGTCA 59.823 37.037 5.91 0.00 40.32 3.58
74 75 8.576442 GGAAAGTTCTTCCAATTAGATTGTCAA 58.424 33.333 0.00 0.00 38.59 3.18
75 76 9.965824 GAAAGTTCTTCCAATTAGATTGTCAAA 57.034 29.630 0.00 0.00 38.59 2.69
78 79 9.918630 AGTTCTTCCAATTAGATTGTCAAATTG 57.081 29.630 0.00 0.00 39.31 2.32
79 80 9.696917 GTTCTTCCAATTAGATTGTCAAATTGT 57.303 29.630 6.86 0.00 38.40 2.71
81 82 9.912634 TCTTCCAATTAGATTGTCAAATTGTTC 57.087 29.630 6.86 0.00 38.40 3.18
82 83 8.741101 TTCCAATTAGATTGTCAAATTGTTCG 57.259 30.769 6.86 0.00 38.40 3.95
83 84 8.105097 TCCAATTAGATTGTCAAATTGTTCGA 57.895 30.769 6.86 0.00 38.40 3.71
84 85 8.739039 TCCAATTAGATTGTCAAATTGTTCGAT 58.261 29.630 6.86 0.00 38.40 3.59
85 86 8.800972 CCAATTAGATTGTCAAATTGTTCGATG 58.199 33.333 6.86 0.00 38.40 3.84
86 87 9.558648 CAATTAGATTGTCAAATTGTTCGATGA 57.441 29.630 0.00 0.00 36.37 2.92
87 88 9.778993 AATTAGATTGTCAAATTGTTCGATGAG 57.221 29.630 0.00 0.00 0.00 2.90
88 89 5.634896 AGATTGTCAAATTGTTCGATGAGC 58.365 37.500 0.00 0.00 0.00 4.26
89 90 5.413833 AGATTGTCAAATTGTTCGATGAGCT 59.586 36.000 0.00 0.00 0.00 4.09
90 91 5.437289 TTGTCAAATTGTTCGATGAGCTT 57.563 34.783 0.00 0.00 0.00 3.74
91 92 5.034554 TGTCAAATTGTTCGATGAGCTTC 57.965 39.130 0.00 0.00 0.00 3.86
92 93 4.514816 TGTCAAATTGTTCGATGAGCTTCA 59.485 37.500 0.00 0.00 0.00 3.02
93 94 5.181811 TGTCAAATTGTTCGATGAGCTTCAT 59.818 36.000 0.00 0.00 40.34 2.57
94 95 6.371271 TGTCAAATTGTTCGATGAGCTTCATA 59.629 34.615 0.00 0.00 37.20 2.15
95 96 6.904011 GTCAAATTGTTCGATGAGCTTCATAG 59.096 38.462 0.00 0.00 37.20 2.23
96 97 6.595326 TCAAATTGTTCGATGAGCTTCATAGT 59.405 34.615 0.00 0.00 37.20 2.12
97 98 6.595772 AATTGTTCGATGAGCTTCATAGTC 57.404 37.500 0.00 0.00 37.20 2.59
98 99 4.718940 TGTTCGATGAGCTTCATAGTCA 57.281 40.909 0.00 0.00 37.20 3.41
99 100 5.268118 TGTTCGATGAGCTTCATAGTCAT 57.732 39.130 0.00 0.00 37.20 3.06
100 101 5.045872 TGTTCGATGAGCTTCATAGTCATG 58.954 41.667 0.00 0.00 37.20 3.07
101 102 4.248691 TCGATGAGCTTCATAGTCATGG 57.751 45.455 0.00 0.00 37.20 3.66
102 103 3.891366 TCGATGAGCTTCATAGTCATGGA 59.109 43.478 0.00 0.00 37.20 3.41
103 104 4.525874 TCGATGAGCTTCATAGTCATGGAT 59.474 41.667 0.00 0.00 37.20 3.41
104 105 4.863689 CGATGAGCTTCATAGTCATGGATC 59.136 45.833 0.00 0.00 37.20 3.36
105 106 5.566230 CGATGAGCTTCATAGTCATGGATCA 60.566 44.000 0.00 0.00 37.20 2.92
106 107 5.619132 TGAGCTTCATAGTCATGGATCAA 57.381 39.130 0.00 0.00 32.61 2.57
107 108 5.993055 TGAGCTTCATAGTCATGGATCAAA 58.007 37.500 0.00 0.00 32.61 2.69
108 109 6.417258 TGAGCTTCATAGTCATGGATCAAAA 58.583 36.000 0.00 0.00 32.61 2.44
109 110 7.058525 TGAGCTTCATAGTCATGGATCAAAAT 58.941 34.615 0.00 0.00 32.61 1.82
110 111 7.558807 TGAGCTTCATAGTCATGGATCAAAATT 59.441 33.333 0.00 0.00 32.61 1.82
111 112 8.302515 AGCTTCATAGTCATGGATCAAAATTT 57.697 30.769 0.00 0.00 32.61 1.82
112 113 9.412460 AGCTTCATAGTCATGGATCAAAATTTA 57.588 29.630 0.00 0.00 32.61 1.40
141 142 9.995003 AATTGAAGTGAAGTTTTATAATGCCAA 57.005 25.926 0.00 0.00 0.00 4.52
142 143 9.995003 ATTGAAGTGAAGTTTTATAATGCCAAA 57.005 25.926 0.00 0.00 0.00 3.28
143 144 9.995003 TTGAAGTGAAGTTTTATAATGCCAAAT 57.005 25.926 0.00 0.00 0.00 2.32
160 161 8.710749 ATGCCAAATATACATTTCTATGTGGT 57.289 30.769 1.22 0.00 44.56 4.16
161 162 8.532186 TGCCAAATATACATTTCTATGTGGTT 57.468 30.769 1.22 0.00 44.56 3.67
162 163 8.976353 TGCCAAATATACATTTCTATGTGGTTT 58.024 29.630 1.22 0.00 44.56 3.27
175 176 8.978874 TTCTATGTGGTTTATATCAATGTGCT 57.021 30.769 0.00 0.00 0.00 4.40
176 177 8.382030 TCTATGTGGTTTATATCAATGTGCTG 57.618 34.615 0.00 0.00 0.00 4.41
177 178 5.247507 TGTGGTTTATATCAATGTGCTGC 57.752 39.130 0.00 0.00 0.00 5.25
178 179 4.097741 TGTGGTTTATATCAATGTGCTGCC 59.902 41.667 0.00 0.00 0.00 4.85
179 180 3.636300 TGGTTTATATCAATGTGCTGCCC 59.364 43.478 0.00 0.00 0.00 5.36
180 181 3.636300 GGTTTATATCAATGTGCTGCCCA 59.364 43.478 0.00 0.00 0.00 5.36
181 182 4.261741 GGTTTATATCAATGTGCTGCCCAG 60.262 45.833 0.00 0.00 0.00 4.45
182 183 4.436113 TTATATCAATGTGCTGCCCAGA 57.564 40.909 0.00 0.00 0.00 3.86
183 184 2.042686 TATCAATGTGCTGCCCAGAC 57.957 50.000 0.00 0.00 0.00 3.51
184 185 0.330604 ATCAATGTGCTGCCCAGACT 59.669 50.000 0.00 0.00 0.00 3.24
185 186 0.111061 TCAATGTGCTGCCCAGACTT 59.889 50.000 0.00 0.00 0.00 3.01
186 187 0.242825 CAATGTGCTGCCCAGACTTG 59.757 55.000 0.00 0.00 0.00 3.16
187 188 0.178981 AATGTGCTGCCCAGACTTGT 60.179 50.000 0.00 0.00 0.00 3.16
188 189 0.178981 ATGTGCTGCCCAGACTTGTT 60.179 50.000 0.00 0.00 0.00 2.83
189 190 0.819259 TGTGCTGCCCAGACTTGTTC 60.819 55.000 0.00 0.00 0.00 3.18
190 191 0.536006 GTGCTGCCCAGACTTGTTCT 60.536 55.000 0.00 0.00 33.33 3.01
191 192 0.183492 TGCTGCCCAGACTTGTTCTT 59.817 50.000 0.00 0.00 28.96 2.52
192 193 0.877743 GCTGCCCAGACTTGTTCTTC 59.122 55.000 0.00 0.00 28.96 2.87
193 194 1.544314 GCTGCCCAGACTTGTTCTTCT 60.544 52.381 0.00 0.00 28.96 2.85
194 195 2.149578 CTGCCCAGACTTGTTCTTCTG 58.850 52.381 0.00 0.00 39.25 3.02
195 196 1.490490 TGCCCAGACTTGTTCTTCTGT 59.510 47.619 0.00 0.00 38.06 3.41
196 197 1.876156 GCCCAGACTTGTTCTTCTGTG 59.124 52.381 0.00 0.00 38.06 3.66
197 198 2.485479 GCCCAGACTTGTTCTTCTGTGA 60.485 50.000 0.00 0.00 38.06 3.58
198 199 3.134458 CCCAGACTTGTTCTTCTGTGAC 58.866 50.000 0.00 0.00 38.06 3.67
199 200 3.432186 CCCAGACTTGTTCTTCTGTGACA 60.432 47.826 0.00 0.00 38.06 3.58
200 201 4.384056 CCAGACTTGTTCTTCTGTGACAT 58.616 43.478 0.00 0.00 38.06 3.06
201 202 4.450419 CCAGACTTGTTCTTCTGTGACATC 59.550 45.833 0.00 0.00 38.06 3.06
202 203 5.295950 CAGACTTGTTCTTCTGTGACATCT 58.704 41.667 0.00 0.00 35.48 2.90
203 204 5.757320 CAGACTTGTTCTTCTGTGACATCTT 59.243 40.000 0.00 0.00 35.48 2.40
204 205 6.925718 CAGACTTGTTCTTCTGTGACATCTTA 59.074 38.462 0.00 0.00 35.48 2.10
205 206 7.601886 CAGACTTGTTCTTCTGTGACATCTTAT 59.398 37.037 0.00 0.00 35.48 1.73
206 207 7.816995 AGACTTGTTCTTCTGTGACATCTTATC 59.183 37.037 0.00 0.00 0.00 1.75
207 208 7.445121 ACTTGTTCTTCTGTGACATCTTATCA 58.555 34.615 0.00 0.00 0.00 2.15
208 209 7.386299 ACTTGTTCTTCTGTGACATCTTATCAC 59.614 37.037 0.00 0.00 45.58 3.06
209 210 6.997655 TGTTCTTCTGTGACATCTTATCACT 58.002 36.000 6.68 0.00 45.58 3.41
210 211 7.445121 TGTTCTTCTGTGACATCTTATCACTT 58.555 34.615 6.68 0.00 45.58 3.16
211 212 7.386025 TGTTCTTCTGTGACATCTTATCACTTG 59.614 37.037 6.68 0.88 45.58 3.16
212 213 6.997655 TCTTCTGTGACATCTTATCACTTGT 58.002 36.000 6.68 0.00 45.58 3.16
213 214 6.870439 TCTTCTGTGACATCTTATCACTTGTG 59.130 38.462 6.68 0.00 45.58 3.33
214 215 4.931601 TCTGTGACATCTTATCACTTGTGC 59.068 41.667 6.68 0.00 45.58 4.57
215 216 4.640364 TGTGACATCTTATCACTTGTGCA 58.360 39.130 6.68 0.00 45.58 4.57
216 217 5.062528 TGTGACATCTTATCACTTGTGCAA 58.937 37.500 6.68 0.00 45.58 4.08
217 218 5.530543 TGTGACATCTTATCACTTGTGCAAA 59.469 36.000 6.68 0.00 45.58 3.68
218 219 6.082338 GTGACATCTTATCACTTGTGCAAAG 58.918 40.000 0.00 0.00 42.68 2.77
219 220 5.051891 ACATCTTATCACTTGTGCAAAGC 57.948 39.130 8.09 0.00 0.00 3.51
220 221 4.763793 ACATCTTATCACTTGTGCAAAGCT 59.236 37.500 8.09 0.00 0.00 3.74
221 222 4.754372 TCTTATCACTTGTGCAAAGCTG 57.246 40.909 8.09 6.68 0.00 4.24
233 234 1.689959 CAAAGCTGCACCTTTTAGCG 58.310 50.000 4.20 0.00 42.10 4.26
234 235 0.039165 AAAGCTGCACCTTTTAGCGC 60.039 50.000 0.00 0.00 42.10 5.92
235 236 2.187599 AAGCTGCACCTTTTAGCGCG 62.188 55.000 0.00 0.00 42.10 6.86
236 237 2.677003 GCTGCACCTTTTAGCGCGA 61.677 57.895 12.10 0.00 0.00 5.87
237 238 1.132640 CTGCACCTTTTAGCGCGAC 59.867 57.895 12.10 0.04 0.00 5.19
238 239 1.565156 CTGCACCTTTTAGCGCGACA 61.565 55.000 12.10 0.00 0.00 4.35
239 240 1.154469 GCACCTTTTAGCGCGACAC 60.154 57.895 12.10 0.00 0.00 3.67
240 241 1.566018 GCACCTTTTAGCGCGACACT 61.566 55.000 12.10 0.00 0.00 3.55
241 242 0.163788 CACCTTTTAGCGCGACACTG 59.836 55.000 12.10 0.00 0.00 3.66
242 243 1.132640 CCTTTTAGCGCGACACTGC 59.867 57.895 12.10 0.00 0.00 4.40
243 244 1.565156 CCTTTTAGCGCGACACTGCA 61.565 55.000 12.10 0.00 34.15 4.41
244 245 0.443869 CTTTTAGCGCGACACTGCAT 59.556 50.000 12.10 0.00 34.15 3.96
245 246 0.871722 TTTTAGCGCGACACTGCATT 59.128 45.000 12.10 0.00 34.15 3.56
246 247 0.871722 TTTAGCGCGACACTGCATTT 59.128 45.000 12.10 0.00 34.15 2.32
247 248 0.165727 TTAGCGCGACACTGCATTTG 59.834 50.000 12.10 0.00 34.15 2.32
248 249 0.948623 TAGCGCGACACTGCATTTGT 60.949 50.000 12.10 0.80 34.15 2.83
249 250 1.370414 GCGCGACACTGCATTTGTT 60.370 52.632 12.10 0.00 34.15 2.83
250 251 0.934436 GCGCGACACTGCATTTGTTT 60.934 50.000 12.10 0.00 34.15 2.83
251 252 0.771756 CGCGACACTGCATTTGTTTG 59.228 50.000 0.00 1.29 34.15 2.93
252 253 0.503961 GCGACACTGCATTTGTTTGC 59.496 50.000 2.81 6.74 43.07 3.68
253 254 1.130955 CGACACTGCATTTGTTTGCC 58.869 50.000 2.81 0.00 42.06 4.52
254 255 1.535649 CGACACTGCATTTGTTTGCCA 60.536 47.619 2.81 0.00 42.06 4.92
255 256 2.758009 GACACTGCATTTGTTTGCCAT 58.242 42.857 2.81 0.00 42.06 4.40
256 257 3.132925 GACACTGCATTTGTTTGCCATT 58.867 40.909 2.81 0.00 42.06 3.16
257 258 2.873472 ACACTGCATTTGTTTGCCATTG 59.127 40.909 0.00 0.00 42.06 2.82
258 259 2.873472 CACTGCATTTGTTTGCCATTGT 59.127 40.909 0.00 0.00 42.06 2.71
259 260 3.312973 CACTGCATTTGTTTGCCATTGTT 59.687 39.130 0.00 0.00 42.06 2.83
260 261 3.312973 ACTGCATTTGTTTGCCATTGTTG 59.687 39.130 0.00 0.00 42.06 3.33
261 262 3.276857 TGCATTTGTTTGCCATTGTTGT 58.723 36.364 0.00 0.00 42.06 3.32
262 263 3.064958 TGCATTTGTTTGCCATTGTTGTG 59.935 39.130 0.00 0.00 42.06 3.33
263 264 3.065095 GCATTTGTTTGCCATTGTTGTGT 59.935 39.130 0.00 0.00 36.60 3.72
264 265 4.589252 CATTTGTTTGCCATTGTTGTGTG 58.411 39.130 0.00 0.00 0.00 3.82
265 266 1.649664 TGTTTGCCATTGTTGTGTGC 58.350 45.000 0.00 0.00 0.00 4.57
266 267 1.206610 TGTTTGCCATTGTTGTGTGCT 59.793 42.857 0.00 0.00 0.00 4.40
267 268 1.860326 GTTTGCCATTGTTGTGTGCTC 59.140 47.619 0.00 0.00 0.00 4.26
268 269 1.109609 TTGCCATTGTTGTGTGCTCA 58.890 45.000 0.00 0.00 0.00 4.26
269 270 0.385029 TGCCATTGTTGTGTGCTCAC 59.615 50.000 11.94 11.94 44.08 3.51
280 281 2.605094 GTGCTCACACTTGCGAAGA 58.395 52.632 3.37 0.00 43.85 2.87
281 282 0.937304 GTGCTCACACTTGCGAAGAA 59.063 50.000 3.37 0.00 43.85 2.52
282 283 1.070309 GTGCTCACACTTGCGAAGAAG 60.070 52.381 3.37 0.00 43.85 2.85
283 284 1.221414 GCTCACACTTGCGAAGAAGT 58.779 50.000 3.37 0.00 36.58 3.01
284 285 2.223947 TGCTCACACTTGCGAAGAAGTA 60.224 45.455 3.37 0.00 34.29 2.24
285 286 2.410053 GCTCACACTTGCGAAGAAGTAG 59.590 50.000 3.37 0.00 34.29 2.57
286 287 3.857383 GCTCACACTTGCGAAGAAGTAGA 60.857 47.826 3.37 0.00 34.29 2.59
287 288 3.902150 TCACACTTGCGAAGAAGTAGAG 58.098 45.455 3.37 0.00 34.29 2.43
288 289 3.318275 TCACACTTGCGAAGAAGTAGAGT 59.682 43.478 3.37 0.00 34.29 3.24
289 290 3.426859 CACACTTGCGAAGAAGTAGAGTG 59.573 47.826 0.00 0.00 39.04 3.51
290 291 3.318275 ACACTTGCGAAGAAGTAGAGTGA 59.682 43.478 7.50 0.00 37.17 3.41
291 292 4.202121 ACACTTGCGAAGAAGTAGAGTGAA 60.202 41.667 7.50 0.00 37.17 3.18
292 293 4.384247 CACTTGCGAAGAAGTAGAGTGAAG 59.616 45.833 0.00 0.00 36.12 3.02
293 294 4.038162 ACTTGCGAAGAAGTAGAGTGAAGT 59.962 41.667 3.37 0.00 34.29 3.01
294 295 3.902150 TGCGAAGAAGTAGAGTGAAGTG 58.098 45.455 0.00 0.00 0.00 3.16
295 296 3.246619 GCGAAGAAGTAGAGTGAAGTGG 58.753 50.000 0.00 0.00 0.00 4.00
296 297 3.057456 GCGAAGAAGTAGAGTGAAGTGGA 60.057 47.826 0.00 0.00 0.00 4.02
297 298 4.558898 GCGAAGAAGTAGAGTGAAGTGGAA 60.559 45.833 0.00 0.00 0.00 3.53
298 299 5.529791 CGAAGAAGTAGAGTGAAGTGGAAA 58.470 41.667 0.00 0.00 0.00 3.13
299 300 5.983720 CGAAGAAGTAGAGTGAAGTGGAAAA 59.016 40.000 0.00 0.00 0.00 2.29
300 301 6.144724 CGAAGAAGTAGAGTGAAGTGGAAAAG 59.855 42.308 0.00 0.00 0.00 2.27
301 302 5.859495 AGAAGTAGAGTGAAGTGGAAAAGG 58.141 41.667 0.00 0.00 0.00 3.11
302 303 5.367060 AGAAGTAGAGTGAAGTGGAAAAGGT 59.633 40.000 0.00 0.00 0.00 3.50
303 304 6.553852 AGAAGTAGAGTGAAGTGGAAAAGGTA 59.446 38.462 0.00 0.00 0.00 3.08
304 305 6.347859 AGTAGAGTGAAGTGGAAAAGGTAG 57.652 41.667 0.00 0.00 0.00 3.18
305 306 4.009370 AGAGTGAAGTGGAAAAGGTAGC 57.991 45.455 0.00 0.00 0.00 3.58
306 307 3.391296 AGAGTGAAGTGGAAAAGGTAGCA 59.609 43.478 0.00 0.00 0.00 3.49
307 308 4.042187 AGAGTGAAGTGGAAAAGGTAGCAT 59.958 41.667 0.00 0.00 0.00 3.79
308 309 4.729868 AGTGAAGTGGAAAAGGTAGCATT 58.270 39.130 0.00 0.00 0.00 3.56
309 310 5.876357 AGTGAAGTGGAAAAGGTAGCATTA 58.124 37.500 0.00 0.00 0.00 1.90
310 311 5.940470 AGTGAAGTGGAAAAGGTAGCATTAG 59.060 40.000 0.00 0.00 0.00 1.73
311 312 5.938125 GTGAAGTGGAAAAGGTAGCATTAGA 59.062 40.000 0.00 0.00 0.00 2.10
312 313 5.938125 TGAAGTGGAAAAGGTAGCATTAGAC 59.062 40.000 0.00 0.00 0.00 2.59
313 314 4.844884 AGTGGAAAAGGTAGCATTAGACC 58.155 43.478 0.00 0.00 35.83 3.85
314 315 3.621715 GTGGAAAAGGTAGCATTAGACCG 59.378 47.826 0.00 0.00 40.91 4.79
315 316 3.262405 TGGAAAAGGTAGCATTAGACCGT 59.738 43.478 0.00 0.00 40.91 4.83
316 317 3.621715 GGAAAAGGTAGCATTAGACCGTG 59.378 47.826 0.00 0.00 40.91 4.94
317 318 2.311124 AAGGTAGCATTAGACCGTGC 57.689 50.000 0.00 0.00 40.91 5.34
318 319 1.191535 AGGTAGCATTAGACCGTGCA 58.808 50.000 0.00 0.00 43.63 4.57
319 320 1.762957 AGGTAGCATTAGACCGTGCAT 59.237 47.619 0.00 0.00 43.63 3.96
320 321 2.170607 AGGTAGCATTAGACCGTGCATT 59.829 45.455 0.00 0.00 43.63 3.56
321 322 2.287915 GGTAGCATTAGACCGTGCATTG 59.712 50.000 0.00 0.00 43.63 2.82
322 323 2.401583 AGCATTAGACCGTGCATTGA 57.598 45.000 0.00 0.00 43.63 2.57
323 324 2.710377 AGCATTAGACCGTGCATTGAA 58.290 42.857 0.00 0.00 43.63 2.69
324 325 2.420022 AGCATTAGACCGTGCATTGAAC 59.580 45.455 0.00 0.00 43.63 3.18
325 326 2.477863 GCATTAGACCGTGCATTGAACC 60.478 50.000 0.00 0.00 40.94 3.62
326 327 1.816074 TTAGACCGTGCATTGAACCC 58.184 50.000 0.00 0.00 0.00 4.11
327 328 0.035820 TAGACCGTGCATTGAACCCC 60.036 55.000 0.00 0.00 0.00 4.95
328 329 1.303317 GACCGTGCATTGAACCCCT 60.303 57.895 0.00 0.00 0.00 4.79
329 330 1.303317 ACCGTGCATTGAACCCCTC 60.303 57.895 0.00 0.00 0.00 4.30
330 331 1.002134 CCGTGCATTGAACCCCTCT 60.002 57.895 0.00 0.00 0.00 3.69
331 332 0.609131 CCGTGCATTGAACCCCTCTT 60.609 55.000 0.00 0.00 0.00 2.85
332 333 1.339631 CCGTGCATTGAACCCCTCTTA 60.340 52.381 0.00 0.00 0.00 2.10
333 334 1.737793 CGTGCATTGAACCCCTCTTAC 59.262 52.381 0.00 0.00 0.00 2.34
334 335 2.615493 CGTGCATTGAACCCCTCTTACT 60.615 50.000 0.00 0.00 0.00 2.24
335 336 3.421844 GTGCATTGAACCCCTCTTACTT 58.578 45.455 0.00 0.00 0.00 2.24
336 337 3.826729 GTGCATTGAACCCCTCTTACTTT 59.173 43.478 0.00 0.00 0.00 2.66
337 338 5.007682 GTGCATTGAACCCCTCTTACTTTA 58.992 41.667 0.00 0.00 0.00 1.85
338 339 5.123979 GTGCATTGAACCCCTCTTACTTTAG 59.876 44.000 0.00 0.00 0.00 1.85
339 340 4.640647 GCATTGAACCCCTCTTACTTTAGG 59.359 45.833 0.00 0.00 0.00 2.69
340 341 3.994931 TGAACCCCTCTTACTTTAGGC 57.005 47.619 0.00 0.00 0.00 3.93
341 342 2.574824 TGAACCCCTCTTACTTTAGGCC 59.425 50.000 0.00 0.00 0.00 5.19
342 343 2.354261 ACCCCTCTTACTTTAGGCCA 57.646 50.000 5.01 0.00 0.00 5.36
343 344 2.639487 ACCCCTCTTACTTTAGGCCAA 58.361 47.619 5.01 0.00 0.00 4.52
344 345 3.198827 ACCCCTCTTACTTTAGGCCAAT 58.801 45.455 5.01 0.00 0.00 3.16
345 346 3.596500 ACCCCTCTTACTTTAGGCCAATT 59.403 43.478 5.01 0.00 0.00 2.32
346 347 4.045462 ACCCCTCTTACTTTAGGCCAATTT 59.955 41.667 5.01 0.00 0.00 1.82
347 348 5.023452 CCCCTCTTACTTTAGGCCAATTTT 58.977 41.667 5.01 0.00 0.00 1.82
348 349 5.483937 CCCCTCTTACTTTAGGCCAATTTTT 59.516 40.000 5.01 0.00 0.00 1.94
349 350 6.666113 CCCCTCTTACTTTAGGCCAATTTTTA 59.334 38.462 5.01 0.00 0.00 1.52
350 351 7.344612 CCCCTCTTACTTTAGGCCAATTTTTAT 59.655 37.037 5.01 0.00 0.00 1.40
351 352 8.414003 CCCTCTTACTTTAGGCCAATTTTTATC 58.586 37.037 5.01 0.00 0.00 1.75
352 353 9.190317 CCTCTTACTTTAGGCCAATTTTTATCT 57.810 33.333 5.01 0.00 0.00 1.98
354 355 9.975218 TCTTACTTTAGGCCAATTTTTATCTCT 57.025 29.630 5.01 0.00 0.00 3.10
359 360 9.468532 CTTTAGGCCAATTTTTATCTCTTATGC 57.531 33.333 5.01 0.00 0.00 3.14
360 361 6.076981 AGGCCAATTTTTATCTCTTATGCG 57.923 37.500 5.01 0.00 0.00 4.73
361 362 5.010012 AGGCCAATTTTTATCTCTTATGCGG 59.990 40.000 5.01 0.00 0.00 5.69
362 363 5.221244 GGCCAATTTTTATCTCTTATGCGGT 60.221 40.000 0.00 0.00 0.00 5.68
363 364 6.273071 GCCAATTTTTATCTCTTATGCGGTT 58.727 36.000 0.00 0.00 0.00 4.44
364 365 7.422399 GCCAATTTTTATCTCTTATGCGGTTA 58.578 34.615 0.00 0.00 0.00 2.85
365 366 7.918562 GCCAATTTTTATCTCTTATGCGGTTAA 59.081 33.333 0.00 0.00 0.00 2.01
366 367 9.450807 CCAATTTTTATCTCTTATGCGGTTAAG 57.549 33.333 0.00 0.00 0.00 1.85
374 375 6.737254 CTCTTATGCGGTTAAGAGGAAAAA 57.263 37.500 17.05 0.00 46.02 1.94
410 411 3.299503 CCCCCTCATGTTTAAATCCTGG 58.700 50.000 0.00 0.00 0.00 4.45
411 412 2.695147 CCCCTCATGTTTAAATCCTGGC 59.305 50.000 0.00 0.00 0.00 4.85
412 413 3.628257 CCCCTCATGTTTAAATCCTGGCT 60.628 47.826 0.00 0.00 0.00 4.75
413 414 3.633986 CCCTCATGTTTAAATCCTGGCTC 59.366 47.826 0.00 0.00 0.00 4.70
414 415 3.633986 CCTCATGTTTAAATCCTGGCTCC 59.366 47.826 0.00 0.00 0.00 4.70
415 416 3.278574 TCATGTTTAAATCCTGGCTCCG 58.721 45.455 0.00 0.00 0.00 4.63
416 417 1.459450 TGTTTAAATCCTGGCTCCGC 58.541 50.000 0.00 0.00 0.00 5.54
435 436 2.759973 CCCGGGCTGAGAGCTACA 60.760 66.667 8.08 0.00 41.99 2.74
436 437 2.790791 CCCGGGCTGAGAGCTACAG 61.791 68.421 8.08 13.86 41.99 2.74
455 456 1.220206 CTCTGTGCTCCGCTTCCAT 59.780 57.895 0.00 0.00 0.00 3.41
458 459 0.809241 CTGTGCTCCGCTTCCATCTC 60.809 60.000 0.00 0.00 0.00 2.75
459 460 1.219124 GTGCTCCGCTTCCATCTCA 59.781 57.895 0.00 0.00 0.00 3.27
460 461 0.391661 GTGCTCCGCTTCCATCTCAA 60.392 55.000 0.00 0.00 0.00 3.02
462 463 0.391661 GCTCCGCTTCCATCTCAACA 60.392 55.000 0.00 0.00 0.00 3.33
471 472 3.183793 TCCATCTCAACATGGTCATCG 57.816 47.619 0.00 0.00 43.62 3.84
566 567 2.814280 TGAACAAGGACTCCGACTTC 57.186 50.000 0.00 0.00 0.00 3.01
601 602 0.622665 CAGATGGCAGGAGGAGGTTT 59.377 55.000 0.00 0.00 0.00 3.27
602 603 1.839994 CAGATGGCAGGAGGAGGTTTA 59.160 52.381 0.00 0.00 0.00 2.01
603 604 2.122768 AGATGGCAGGAGGAGGTTTAG 58.877 52.381 0.00 0.00 0.00 1.85
604 605 0.548510 ATGGCAGGAGGAGGTTTAGC 59.451 55.000 0.00 0.00 0.00 3.09
605 606 1.224870 GGCAGGAGGAGGTTTAGCC 59.775 63.158 0.00 0.00 37.58 3.93
606 607 1.562672 GGCAGGAGGAGGTTTAGCCA 61.563 60.000 0.00 0.00 40.29 4.75
607 608 0.328258 GCAGGAGGAGGTTTAGCCAA 59.672 55.000 0.00 0.00 40.61 4.52
608 609 1.271926 GCAGGAGGAGGTTTAGCCAAA 60.272 52.381 0.00 0.00 40.61 3.28
609 610 2.621668 GCAGGAGGAGGTTTAGCCAAAT 60.622 50.000 0.00 0.00 40.61 2.32
610 611 3.701664 CAGGAGGAGGTTTAGCCAAATT 58.298 45.455 0.00 0.00 40.61 1.82
611 612 4.855340 CAGGAGGAGGTTTAGCCAAATTA 58.145 43.478 0.00 0.00 40.61 1.40
612 613 5.449553 CAGGAGGAGGTTTAGCCAAATTAT 58.550 41.667 0.00 0.00 40.61 1.28
614 615 5.193728 AGGAGGAGGTTTAGCCAAATTATGA 59.806 40.000 0.00 0.00 40.61 2.15
615 616 5.891551 GGAGGAGGTTTAGCCAAATTATGAA 59.108 40.000 0.00 0.00 40.61 2.57
616 617 6.379988 GGAGGAGGTTTAGCCAAATTATGAAA 59.620 38.462 0.00 0.00 40.61 2.69
617 618 7.069950 GGAGGAGGTTTAGCCAAATTATGAAAT 59.930 37.037 0.00 0.00 40.61 2.17
618 619 9.131791 GAGGAGGTTTAGCCAAATTATGAAATA 57.868 33.333 0.00 0.00 40.61 1.40
619 620 9.487442 AGGAGGTTTAGCCAAATTATGAAATAA 57.513 29.630 0.00 0.00 40.85 1.40
697 1024 7.394359 ACAATAATCAGTGGCTGTGTTATTTCT 59.606 33.333 13.71 5.87 34.60 2.52
700 1027 2.416547 CAGTGGCTGTGTTATTTCTCCG 59.583 50.000 0.00 0.00 0.00 4.63
1266 1624 0.323178 TACGCTCCGACCTCTCCTTT 60.323 55.000 0.00 0.00 0.00 3.11
1752 2110 1.004918 CGTTGAGAGCTTCCGGGTT 60.005 57.895 0.00 0.00 0.00 4.11
1848 2206 3.441101 ACCAGGAGACACTACAATAGCA 58.559 45.455 0.00 0.00 0.00 3.49
1854 2212 5.239744 AGGAGACACTACAATAGCAGATACG 59.760 44.000 0.00 0.00 0.00 3.06
2238 2596 1.133823 TGTGTCTTGTGCCCAATGTCT 60.134 47.619 0.00 0.00 0.00 3.41
2246 2607 1.220749 GCCCAATGTCTACGAGGCA 59.779 57.895 0.00 0.00 40.20 4.75
2280 2641 1.396653 GATCCTGGAAGTGGGCATTG 58.603 55.000 0.00 0.00 0.00 2.82
2608 2969 8.975663 TCATAAATTCTGATCTCAAAGCTGAT 57.024 30.769 0.00 0.00 0.00 2.90
2762 3124 2.592194 CATGTGCTGATTGTTGTCTGC 58.408 47.619 0.00 0.00 41.67 4.26
2777 3139 6.272318 TGTTGTCTGCTTATTTGGACAAAAG 58.728 36.000 8.59 0.00 45.86 2.27
2783 3145 7.699812 GTCTGCTTATTTGGACAAAAGATGATC 59.300 37.037 1.17 0.00 33.56 2.92
3025 3594 8.355913 TGTCATGATAGATCAGTTACTAAGCAG 58.644 37.037 0.00 0.00 40.64 4.24
3056 3625 6.320164 GCCCATAGGTGATACAATGTTGTTTA 59.680 38.462 3.45 0.00 37.81 2.01
3099 3668 2.879756 GCACAGAAGTATTGGGCCTTCA 60.880 50.000 4.53 0.00 39.04 3.02
3190 3760 9.056005 GTTATGCATCATTACTTTGATACCTGA 57.944 33.333 0.19 0.00 34.59 3.86
3241 3811 7.827236 TGCTTACCAATTACTGCTACTATGTTT 59.173 33.333 0.00 0.00 0.00 2.83
3256 3826 6.759497 ACTATGTTTGGAAGGTAATTCTGC 57.241 37.500 0.00 0.00 38.07 4.26
3290 3860 3.152341 CATGCACCCCATATTCTCCTTC 58.848 50.000 0.00 0.00 31.47 3.46
3376 3948 6.430308 CCATATCATGTGCTAGCAGATCTTTT 59.570 38.462 23.52 11.37 0.00 2.27
3496 4068 7.517614 TGGATTTACAAAAGCATGTTCTGTA 57.482 32.000 0.00 0.00 34.75 2.74
3853 4425 5.316987 GCATTAGCCTATGGAACTGGTTAT 58.683 41.667 0.00 0.00 33.58 1.89
3922 4494 0.329596 GGCCTTGTGTTCTCTGGGAT 59.670 55.000 0.00 0.00 0.00 3.85
4003 4575 6.265649 GTCATATATATGATACCAGAGGCGGT 59.734 42.308 24.62 0.00 43.82 5.68
4108 4680 3.246619 GGATCTTCGCGAGGTTATGATC 58.753 50.000 18.33 17.78 0.00 2.92
4259 5158 7.375053 AGTTCTACAACAACAACAACAACAAT 58.625 30.769 0.00 0.00 34.60 2.71
4359 5259 1.753073 GGCACATGGATAGCAAGCTTT 59.247 47.619 0.00 0.00 0.00 3.51
4375 5275 3.818121 TTTCACGCACCCCTGTCCG 62.818 63.158 0.00 0.00 0.00 4.79
4390 5290 2.924290 CTGTCCGTAGCTAGTTCTTTGC 59.076 50.000 0.00 0.00 0.00 3.68
4464 5365 0.033405 TCTACCCCGACCTCTCTTGG 60.033 60.000 0.00 0.00 0.00 3.61
4501 5402 2.184322 CCGTCCGCTATGCACTGT 59.816 61.111 0.00 0.00 0.00 3.55
4521 5423 1.376553 GCTTCTGGAGGCCTGTGTC 60.377 63.158 12.00 0.00 0.00 3.67
4585 5487 0.894835 CAATTGGTGCTACCCCAACC 59.105 55.000 0.00 0.00 44.36 3.77
4609 5511 7.556635 ACCCTATCTCGTATATCATCATTTCGA 59.443 37.037 0.00 0.00 0.00 3.71
4697 5601 3.734463 TGAACATGTCGCCTTTTAGTCA 58.266 40.909 0.00 0.00 0.00 3.41
4797 5702 3.262660 TCTTGTCACAGAGAATGCCAGAT 59.737 43.478 0.00 0.00 0.00 2.90
5144 6056 0.984230 TCCCTTGTGACCTCATCCAC 59.016 55.000 0.00 0.00 0.00 4.02
5220 6133 1.627864 TCGGGAAGTCATCAGTGTCA 58.372 50.000 0.00 0.00 0.00 3.58
5240 6153 4.034048 GTCAACATCACTTGTTCGAACACT 59.966 41.667 29.74 15.41 45.55 3.55
5241 6154 4.634004 TCAACATCACTTGTTCGAACACTT 59.366 37.500 29.74 16.81 45.55 3.16
5242 6155 4.536364 ACATCACTTGTTCGAACACTTG 57.464 40.909 29.74 26.06 38.92 3.16
5243 6156 3.938963 ACATCACTTGTTCGAACACTTGT 59.061 39.130 29.74 23.34 38.92 3.16
5244 6157 4.034048 ACATCACTTGTTCGAACACTTGTC 59.966 41.667 29.74 1.29 38.92 3.18
5245 6158 3.591023 TCACTTGTTCGAACACTTGTCA 58.409 40.909 29.74 13.28 38.92 3.58
5246 6159 3.616821 TCACTTGTTCGAACACTTGTCAG 59.383 43.478 29.74 23.60 38.92 3.51
5424 6352 6.364261 CGTATCTCTCCATAAGTTGTCGTAG 58.636 44.000 0.00 0.00 0.00 3.51
5447 6375 3.173953 AGAAAATGGCTTCCATGGTCA 57.826 42.857 12.58 6.95 44.40 4.02
5465 6393 1.358787 TCAACCTCCCAGGCATGAAAT 59.641 47.619 0.00 0.00 39.63 2.17
5516 6444 1.737838 TCTTAAGCGGTGCTCAATGG 58.262 50.000 0.00 0.00 38.25 3.16
5526 6454 1.227497 GCTCAATGGCTCTCTCCCG 60.227 63.158 0.00 0.00 0.00 5.14
5564 6492 2.288666 TCATCAGCTTAATTCCACGGC 58.711 47.619 0.00 0.00 0.00 5.68
5570 6498 4.702612 TCAGCTTAATTCCACGGCAATTAA 59.297 37.500 0.00 7.69 35.41 1.40
5614 6543 8.454106 CCTTGTTCTTGAAGATTGGTACTAATG 58.546 37.037 9.44 0.00 0.00 1.90
5637 6566 1.827969 CTCCGTCTCCATTCTTCTGGT 59.172 52.381 0.00 0.00 37.57 4.00
5638 6567 2.234908 CTCCGTCTCCATTCTTCTGGTT 59.765 50.000 0.00 0.00 37.57 3.67
5754 6685 4.216257 AGTTGTAGCTTAAACTGTGCCATG 59.784 41.667 11.70 0.00 35.34 3.66
5835 6766 7.986562 AGTTCTTCAGTTTTTCAGTACCTTTC 58.013 34.615 0.00 0.00 0.00 2.62
5946 6878 4.516698 TCTGAACACTTTGATCTTGAAGGC 59.483 41.667 0.00 0.00 0.00 4.35
5979 6911 1.781786 TAGCTGATGACCCAGAGGAC 58.218 55.000 0.00 0.00 36.29 3.85
6393 7328 4.729370 TCCAATATTTCATCCAGGTGGGTA 59.271 41.667 0.00 0.00 38.11 3.69
6725 7660 4.445453 TGAGATGATGATCTTTTCCGTGG 58.555 43.478 0.00 0.00 39.19 4.94
6770 7705 3.161866 TCTGTACTGCTGTGTCATGGTA 58.838 45.455 6.48 0.00 0.00 3.25
7349 8309 2.093128 CCACCACCTCCCAATGTAGTAC 60.093 54.545 0.00 0.00 0.00 2.73
7422 8384 4.341235 TGGTAGTGGAGACTATGAAATCCG 59.659 45.833 0.00 0.00 37.03 4.18
7486 8448 1.526917 GGCCATCTAGCATTGCGGT 60.527 57.895 0.00 0.00 0.00 5.68
7548 8511 1.529438 CCAGACGAGTTGCGCTAAAAA 59.471 47.619 9.73 0.00 46.04 1.94
7637 8725 7.282675 CCATCTCAGATTGGCTAATCCATATTC 59.717 40.741 18.20 0.00 46.04 1.75
7872 8960 1.069049 CTTGGGGAGCCAGTTGTTTTG 59.931 52.381 0.00 0.00 0.00 2.44
8442 9532 2.693762 GGACGACATCACGGACGGA 61.694 63.158 0.00 0.00 37.61 4.69
8479 9569 0.179150 CGAAGAGGAGGTGAAGAGCG 60.179 60.000 0.00 0.00 0.00 5.03
8553 9643 0.394352 CCAAACCTAAGATGCCGCCT 60.394 55.000 0.00 0.00 0.00 5.52
8595 9685 2.456577 GAAGAGGAGAGGAAGCAGAGT 58.543 52.381 0.00 0.00 0.00 3.24
8814 9924 2.238521 TGATTTCTTTTTCAGCCGGCT 58.761 42.857 27.08 27.08 0.00 5.52
8856 9966 2.224523 TGTATGATCCTGCCGATTTCCC 60.225 50.000 0.00 0.00 0.00 3.97
8983 10100 4.959631 TGTTGTGAATCTTTCGTACGAC 57.040 40.909 19.36 5.88 0.00 4.34
9296 10495 4.135493 GTCGCGAACTCGGCAAGC 62.135 66.667 12.06 0.00 40.23 4.01
9645 10844 0.974383 CCGTCACCTACAACTCCCTT 59.026 55.000 0.00 0.00 0.00 3.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 6.142320 GCGACAATGTAAAGGTTCAAAGAAAG 59.858 38.462 0.00 0.00 0.00 2.62
2 3 5.974751 GCGACAATGTAAAGGTTCAAAGAAA 59.025 36.000 0.00 0.00 0.00 2.52
3 4 5.298276 AGCGACAATGTAAAGGTTCAAAGAA 59.702 36.000 0.00 0.00 0.00 2.52
4 5 4.819630 AGCGACAATGTAAAGGTTCAAAGA 59.180 37.500 0.00 0.00 0.00 2.52
6 7 6.811253 ATAGCGACAATGTAAAGGTTCAAA 57.189 33.333 0.00 0.00 0.00 2.69
7 8 9.602568 TTATATAGCGACAATGTAAAGGTTCAA 57.397 29.630 0.00 0.00 0.00 2.69
8 9 9.602568 TTTATATAGCGACAATGTAAAGGTTCA 57.397 29.630 0.00 0.00 0.00 3.18
22 23 9.651718 CCTCAAACAATCTTTTTATATAGCGAC 57.348 33.333 0.00 0.00 0.00 5.19
23 24 8.836413 CCCTCAAACAATCTTTTTATATAGCGA 58.164 33.333 0.00 0.00 0.00 4.93
24 25 8.836413 TCCCTCAAACAATCTTTTTATATAGCG 58.164 33.333 0.00 0.00 0.00 4.26
30 31 9.764363 GAACTTTCCCTCAAACAATCTTTTTAT 57.236 29.630 0.00 0.00 0.00 1.40
31 32 8.977412 AGAACTTTCCCTCAAACAATCTTTTTA 58.023 29.630 0.00 0.00 0.00 1.52
32 33 7.851228 AGAACTTTCCCTCAAACAATCTTTTT 58.149 30.769 0.00 0.00 0.00 1.94
33 34 7.423844 AGAACTTTCCCTCAAACAATCTTTT 57.576 32.000 0.00 0.00 0.00 2.27
34 35 7.417911 GGAAGAACTTTCCCTCAAACAATCTTT 60.418 37.037 0.00 0.00 32.48 2.52
35 36 6.040955 GGAAGAACTTTCCCTCAAACAATCTT 59.959 38.462 0.00 0.00 32.48 2.40
36 37 5.536538 GGAAGAACTTTCCCTCAAACAATCT 59.463 40.000 0.00 0.00 32.48 2.40
37 38 5.301805 TGGAAGAACTTTCCCTCAAACAATC 59.698 40.000 3.66 0.00 37.79 2.67
38 39 5.208121 TGGAAGAACTTTCCCTCAAACAAT 58.792 37.500 3.66 0.00 37.79 2.71
39 40 4.605183 TGGAAGAACTTTCCCTCAAACAA 58.395 39.130 3.66 0.00 37.79 2.83
40 41 4.243793 TGGAAGAACTTTCCCTCAAACA 57.756 40.909 3.66 0.00 37.79 2.83
41 42 5.791336 ATTGGAAGAACTTTCCCTCAAAC 57.209 39.130 3.66 0.00 37.79 2.93
42 43 7.294584 TCTAATTGGAAGAACTTTCCCTCAAA 58.705 34.615 3.66 0.00 37.79 2.69
43 44 6.848069 TCTAATTGGAAGAACTTTCCCTCAA 58.152 36.000 3.66 0.00 37.79 3.02
44 45 6.448369 TCTAATTGGAAGAACTTTCCCTCA 57.552 37.500 3.66 0.00 37.79 3.86
45 46 7.394641 ACAATCTAATTGGAAGAACTTTCCCTC 59.605 37.037 0.00 0.00 44.42 4.30
46 47 7.241628 ACAATCTAATTGGAAGAACTTTCCCT 58.758 34.615 0.00 0.00 44.42 4.20
47 48 7.176690 TGACAATCTAATTGGAAGAACTTTCCC 59.823 37.037 0.00 0.00 44.42 3.97
48 49 8.110860 TGACAATCTAATTGGAAGAACTTTCC 57.889 34.615 0.00 0.00 44.42 3.13
49 50 9.965824 TTTGACAATCTAATTGGAAGAACTTTC 57.034 29.630 0.00 0.00 44.42 2.62
52 53 9.918630 CAATTTGACAATCTAATTGGAAGAACT 57.081 29.630 14.21 0.00 42.05 3.01
53 54 9.696917 ACAATTTGACAATCTAATTGGAAGAAC 57.303 29.630 21.45 0.00 46.39 3.01
55 56 9.912634 GAACAATTTGACAATCTAATTGGAAGA 57.087 29.630 21.45 0.00 46.39 2.87
56 57 8.853345 CGAACAATTTGACAATCTAATTGGAAG 58.147 33.333 21.45 12.46 46.39 3.46
57 58 8.572185 TCGAACAATTTGACAATCTAATTGGAA 58.428 29.630 21.45 8.14 46.39 3.53
58 59 8.105097 TCGAACAATTTGACAATCTAATTGGA 57.895 30.769 21.45 11.73 46.39 3.53
59 60 8.800972 CATCGAACAATTTGACAATCTAATTGG 58.199 33.333 21.45 10.25 46.39 3.16
60 61 9.558648 TCATCGAACAATTTGACAATCTAATTG 57.441 29.630 18.12 18.12 46.99 2.32
61 62 9.778993 CTCATCGAACAATTTGACAATCTAATT 57.221 29.630 2.79 0.00 33.35 1.40
62 63 7.912250 GCTCATCGAACAATTTGACAATCTAAT 59.088 33.333 2.79 0.00 0.00 1.73
63 64 7.119699 AGCTCATCGAACAATTTGACAATCTAA 59.880 33.333 2.79 0.00 0.00 2.10
64 65 6.595326 AGCTCATCGAACAATTTGACAATCTA 59.405 34.615 2.79 0.00 0.00 1.98
65 66 5.413833 AGCTCATCGAACAATTTGACAATCT 59.586 36.000 2.79 0.00 0.00 2.40
66 67 5.634896 AGCTCATCGAACAATTTGACAATC 58.365 37.500 2.79 0.00 0.00 2.67
67 68 5.633830 AGCTCATCGAACAATTTGACAAT 57.366 34.783 2.79 0.00 0.00 2.71
68 69 5.008514 TGAAGCTCATCGAACAATTTGACAA 59.991 36.000 2.79 0.00 0.00 3.18
69 70 4.514816 TGAAGCTCATCGAACAATTTGACA 59.485 37.500 2.79 0.00 0.00 3.58
70 71 5.034554 TGAAGCTCATCGAACAATTTGAC 57.965 39.130 2.79 0.00 0.00 3.18
71 72 5.885230 ATGAAGCTCATCGAACAATTTGA 57.115 34.783 2.79 0.00 29.59 2.69
72 73 6.779117 ACTATGAAGCTCATCGAACAATTTG 58.221 36.000 0.00 0.00 38.26 2.32
73 74 6.595326 TGACTATGAAGCTCATCGAACAATTT 59.405 34.615 0.00 0.00 38.26 1.82
74 75 6.108687 TGACTATGAAGCTCATCGAACAATT 58.891 36.000 0.00 0.00 38.26 2.32
75 76 5.664457 TGACTATGAAGCTCATCGAACAAT 58.336 37.500 0.00 0.00 38.26 2.71
76 77 5.072040 TGACTATGAAGCTCATCGAACAA 57.928 39.130 0.00 0.00 38.26 2.83
77 78 4.718940 TGACTATGAAGCTCATCGAACA 57.281 40.909 0.00 0.00 38.26 3.18
78 79 4.447054 CCATGACTATGAAGCTCATCGAAC 59.553 45.833 0.00 0.00 38.26 3.95
79 80 4.342092 TCCATGACTATGAAGCTCATCGAA 59.658 41.667 0.00 0.00 38.26 3.71
80 81 3.891366 TCCATGACTATGAAGCTCATCGA 59.109 43.478 0.00 0.00 38.26 3.59
81 82 4.248691 TCCATGACTATGAAGCTCATCG 57.751 45.455 0.00 0.48 38.26 3.84
82 83 5.791666 TGATCCATGACTATGAAGCTCATC 58.208 41.667 0.00 0.00 38.26 2.92
83 84 5.820404 TGATCCATGACTATGAAGCTCAT 57.180 39.130 0.00 0.00 40.72 2.90
84 85 5.619132 TTGATCCATGACTATGAAGCTCA 57.381 39.130 0.00 0.00 36.36 4.26
85 86 6.932356 TTTTGATCCATGACTATGAAGCTC 57.068 37.500 0.00 0.00 36.36 4.09
86 87 7.893124 AATTTTGATCCATGACTATGAAGCT 57.107 32.000 0.00 0.00 36.36 3.74
115 116 9.995003 TTGGCATTATAAAACTTCACTTCAATT 57.005 25.926 0.00 0.00 0.00 2.32
116 117 9.995003 TTTGGCATTATAAAACTTCACTTCAAT 57.005 25.926 0.00 0.00 0.00 2.57
117 118 9.995003 ATTTGGCATTATAAAACTTCACTTCAA 57.005 25.926 0.00 0.00 0.00 2.69
134 135 9.146586 ACCACATAGAAATGTATATTTGGCATT 57.853 29.630 1.75 0.00 44.70 3.56
135 136 8.710749 ACCACATAGAAATGTATATTTGGCAT 57.289 30.769 1.75 0.00 44.70 4.40
136 137 8.532186 AACCACATAGAAATGTATATTTGGCA 57.468 30.769 1.75 0.00 44.70 4.92
149 150 9.407380 AGCACATTGATATAAACCACATAGAAA 57.593 29.630 0.00 0.00 0.00 2.52
150 151 8.839343 CAGCACATTGATATAAACCACATAGAA 58.161 33.333 0.00 0.00 0.00 2.10
151 152 7.041167 GCAGCACATTGATATAAACCACATAGA 60.041 37.037 0.00 0.00 0.00 1.98
152 153 7.080099 GCAGCACATTGATATAAACCACATAG 58.920 38.462 0.00 0.00 0.00 2.23
153 154 6.016360 GGCAGCACATTGATATAAACCACATA 60.016 38.462 0.00 0.00 0.00 2.29
154 155 5.221303 GGCAGCACATTGATATAAACCACAT 60.221 40.000 0.00 0.00 0.00 3.21
155 156 4.097741 GGCAGCACATTGATATAAACCACA 59.902 41.667 0.00 0.00 0.00 4.17
156 157 4.499696 GGGCAGCACATTGATATAAACCAC 60.500 45.833 0.00 0.00 0.00 4.16
157 158 3.636300 GGGCAGCACATTGATATAAACCA 59.364 43.478 0.00 0.00 0.00 3.67
158 159 3.636300 TGGGCAGCACATTGATATAAACC 59.364 43.478 0.00 0.00 0.00 3.27
159 160 4.580167 TCTGGGCAGCACATTGATATAAAC 59.420 41.667 0.00 0.00 0.00 2.01
160 161 4.580167 GTCTGGGCAGCACATTGATATAAA 59.420 41.667 0.00 0.00 0.00 1.40
161 162 4.136796 GTCTGGGCAGCACATTGATATAA 58.863 43.478 0.00 0.00 0.00 0.98
162 163 3.392285 AGTCTGGGCAGCACATTGATATA 59.608 43.478 0.00 0.00 0.00 0.86
163 164 2.174210 AGTCTGGGCAGCACATTGATAT 59.826 45.455 0.00 0.00 0.00 1.63
164 165 1.561076 AGTCTGGGCAGCACATTGATA 59.439 47.619 0.00 0.00 0.00 2.15
165 166 0.330604 AGTCTGGGCAGCACATTGAT 59.669 50.000 0.00 0.00 0.00 2.57
166 167 0.111061 AAGTCTGGGCAGCACATTGA 59.889 50.000 0.00 0.00 0.00 2.57
167 168 0.242825 CAAGTCTGGGCAGCACATTG 59.757 55.000 0.00 0.00 0.00 2.82
168 169 0.178981 ACAAGTCTGGGCAGCACATT 60.179 50.000 0.00 0.00 0.00 2.71
169 170 0.178981 AACAAGTCTGGGCAGCACAT 60.179 50.000 0.00 0.00 0.00 3.21
170 171 0.819259 GAACAAGTCTGGGCAGCACA 60.819 55.000 0.00 0.00 0.00 4.57
171 172 0.536006 AGAACAAGTCTGGGCAGCAC 60.536 55.000 0.00 0.00 34.29 4.40
172 173 0.183492 AAGAACAAGTCTGGGCAGCA 59.817 50.000 0.00 0.00 36.40 4.41
173 174 0.877743 GAAGAACAAGTCTGGGCAGC 59.122 55.000 0.00 0.00 36.40 5.25
174 175 2.149578 CAGAAGAACAAGTCTGGGCAG 58.850 52.381 0.00 0.00 38.08 4.85
175 176 1.490490 ACAGAAGAACAAGTCTGGGCA 59.510 47.619 5.72 0.00 44.61 5.36
176 177 1.876156 CACAGAAGAACAAGTCTGGGC 59.124 52.381 5.72 0.00 44.61 5.36
177 178 3.134458 GTCACAGAAGAACAAGTCTGGG 58.866 50.000 5.72 1.29 45.08 4.45
178 179 3.797039 TGTCACAGAAGAACAAGTCTGG 58.203 45.455 5.72 0.00 44.61 3.86
179 180 5.295950 AGATGTCACAGAAGAACAAGTCTG 58.704 41.667 0.00 0.00 45.59 3.51
180 181 5.543507 AGATGTCACAGAAGAACAAGTCT 57.456 39.130 0.00 0.00 38.69 3.24
181 182 7.600375 TGATAAGATGTCACAGAAGAACAAGTC 59.400 37.037 0.00 0.00 0.00 3.01
182 183 7.386299 GTGATAAGATGTCACAGAAGAACAAGT 59.614 37.037 2.83 0.00 44.13 3.16
183 184 7.601886 AGTGATAAGATGTCACAGAAGAACAAG 59.398 37.037 9.43 0.00 46.46 3.16
184 185 7.445121 AGTGATAAGATGTCACAGAAGAACAA 58.555 34.615 9.43 0.00 46.46 2.83
185 186 6.997655 AGTGATAAGATGTCACAGAAGAACA 58.002 36.000 9.43 0.00 46.46 3.18
186 187 7.386299 ACAAGTGATAAGATGTCACAGAAGAAC 59.614 37.037 9.43 0.00 46.46 3.01
187 188 7.386025 CACAAGTGATAAGATGTCACAGAAGAA 59.614 37.037 9.43 0.00 46.46 2.52
188 189 6.870439 CACAAGTGATAAGATGTCACAGAAGA 59.130 38.462 9.43 0.00 46.46 2.87
189 190 6.401903 GCACAAGTGATAAGATGTCACAGAAG 60.402 42.308 4.04 0.41 46.46 2.85
190 191 5.409520 GCACAAGTGATAAGATGTCACAGAA 59.590 40.000 4.04 0.00 46.46 3.02
191 192 4.931601 GCACAAGTGATAAGATGTCACAGA 59.068 41.667 4.04 0.00 46.46 3.41
192 193 4.692155 TGCACAAGTGATAAGATGTCACAG 59.308 41.667 4.04 4.69 46.46 3.66
193 194 4.640364 TGCACAAGTGATAAGATGTCACA 58.360 39.130 4.04 0.00 46.46 3.58
194 195 5.611796 TTGCACAAGTGATAAGATGTCAC 57.388 39.130 4.04 0.00 44.85 3.67
195 196 5.335113 GCTTTGCACAAGTGATAAGATGTCA 60.335 40.000 14.73 0.00 0.00 3.58
196 197 5.091431 GCTTTGCACAAGTGATAAGATGTC 58.909 41.667 14.73 0.00 0.00 3.06
197 198 4.763793 AGCTTTGCACAAGTGATAAGATGT 59.236 37.500 14.73 0.00 0.00 3.06
198 199 5.093457 CAGCTTTGCACAAGTGATAAGATG 58.907 41.667 14.12 14.12 34.87 2.90
199 200 4.380233 GCAGCTTTGCACAAGTGATAAGAT 60.380 41.667 14.73 8.49 34.41 2.40
200 201 3.058016 GCAGCTTTGCACAAGTGATAAGA 60.058 43.478 14.73 0.00 34.41 2.10
201 202 3.240069 GCAGCTTTGCACAAGTGATAAG 58.760 45.455 4.04 7.27 34.41 1.73
202 203 2.622470 TGCAGCTTTGCACAAGTGATAA 59.378 40.909 4.04 0.00 40.23 1.75
203 204 2.228925 TGCAGCTTTGCACAAGTGATA 58.771 42.857 4.04 0.00 40.23 2.15
204 205 1.034356 TGCAGCTTTGCACAAGTGAT 58.966 45.000 4.04 0.00 40.23 3.06
205 206 2.491291 TGCAGCTTTGCACAAGTGA 58.509 47.368 4.04 0.00 40.23 3.41
212 213 1.269726 GCTAAAAGGTGCAGCTTTGCA 60.270 47.619 36.73 27.13 43.22 4.08
213 214 1.422388 GCTAAAAGGTGCAGCTTTGC 58.578 50.000 36.73 31.61 32.46 3.68
214 215 1.689959 CGCTAAAAGGTGCAGCTTTG 58.310 50.000 36.73 27.42 33.03 2.77
215 216 0.039165 GCGCTAAAAGGTGCAGCTTT 60.039 50.000 32.52 32.52 41.71 3.51
216 217 1.581447 GCGCTAAAAGGTGCAGCTT 59.419 52.632 24.96 24.96 41.71 3.74
217 218 2.680913 CGCGCTAAAAGGTGCAGCT 61.681 57.895 13.85 13.85 42.14 4.24
218 219 2.202349 CGCGCTAAAAGGTGCAGC 60.202 61.111 8.11 8.11 42.14 5.25
219 220 1.132640 GTCGCGCTAAAAGGTGCAG 59.867 57.895 5.56 0.00 42.14 4.41
220 221 1.595655 TGTCGCGCTAAAAGGTGCA 60.596 52.632 5.56 0.00 42.14 4.57
221 222 1.154469 GTGTCGCGCTAAAAGGTGC 60.154 57.895 5.56 0.00 39.09 5.01
222 223 0.163788 CAGTGTCGCGCTAAAAGGTG 59.836 55.000 5.56 0.00 0.00 4.00
223 224 1.566018 GCAGTGTCGCGCTAAAAGGT 61.566 55.000 5.56 0.00 0.00 3.50
224 225 1.132640 GCAGTGTCGCGCTAAAAGG 59.867 57.895 5.56 0.00 0.00 3.11
225 226 0.443869 ATGCAGTGTCGCGCTAAAAG 59.556 50.000 5.56 0.00 33.35 2.27
226 227 0.871722 AATGCAGTGTCGCGCTAAAA 59.128 45.000 5.56 0.00 33.35 1.52
227 228 0.871722 AAATGCAGTGTCGCGCTAAA 59.128 45.000 5.56 0.00 33.35 1.85
228 229 0.165727 CAAATGCAGTGTCGCGCTAA 59.834 50.000 5.56 0.00 33.35 3.09
229 230 0.948623 ACAAATGCAGTGTCGCGCTA 60.949 50.000 5.56 0.00 33.35 4.26
230 231 1.785041 AACAAATGCAGTGTCGCGCT 61.785 50.000 5.56 0.00 33.35 5.92
231 232 0.934436 AAACAAATGCAGTGTCGCGC 60.934 50.000 0.00 0.00 33.35 6.86
232 233 0.771756 CAAACAAATGCAGTGTCGCG 59.228 50.000 0.00 0.00 33.35 5.87
233 234 0.503961 GCAAACAAATGCAGTGTCGC 59.496 50.000 6.30 8.56 45.70 5.19
241 242 3.065095 ACACAACAATGGCAAACAAATGC 59.935 39.130 0.00 0.00 45.67 3.56
242 243 4.589252 CACACAACAATGGCAAACAAATG 58.411 39.130 0.00 0.00 0.00 2.32
243 244 3.065095 GCACACAACAATGGCAAACAAAT 59.935 39.130 0.00 0.00 0.00 2.32
244 245 2.417933 GCACACAACAATGGCAAACAAA 59.582 40.909 0.00 0.00 0.00 2.83
245 246 2.005451 GCACACAACAATGGCAAACAA 58.995 42.857 0.00 0.00 0.00 2.83
246 247 1.206610 AGCACACAACAATGGCAAACA 59.793 42.857 0.00 0.00 0.00 2.83
247 248 1.860326 GAGCACACAACAATGGCAAAC 59.140 47.619 0.00 0.00 0.00 2.93
248 249 1.479730 TGAGCACACAACAATGGCAAA 59.520 42.857 0.00 0.00 0.00 3.68
249 250 1.109609 TGAGCACACAACAATGGCAA 58.890 45.000 0.00 0.00 0.00 4.52
250 251 0.385029 GTGAGCACACAACAATGGCA 59.615 50.000 9.58 0.00 45.32 4.92
251 252 3.184094 GTGAGCACACAACAATGGC 57.816 52.632 9.58 0.00 45.32 4.40
262 263 0.937304 TTCTTCGCAAGTGTGAGCAC 59.063 50.000 0.00 0.00 45.57 4.40
263 264 1.220529 CTTCTTCGCAAGTGTGAGCA 58.779 50.000 0.00 0.00 35.80 4.26
264 265 1.221414 ACTTCTTCGCAAGTGTGAGC 58.779 50.000 0.00 0.00 35.18 4.26
265 266 3.902150 TCTACTTCTTCGCAAGTGTGAG 58.098 45.455 4.93 0.00 37.20 3.51
266 267 3.318275 ACTCTACTTCTTCGCAAGTGTGA 59.682 43.478 4.93 0.00 37.20 3.58
267 268 3.426859 CACTCTACTTCTTCGCAAGTGTG 59.573 47.826 4.93 0.00 37.20 3.82
268 269 3.318275 TCACTCTACTTCTTCGCAAGTGT 59.682 43.478 0.00 1.75 37.20 3.55
269 270 3.902150 TCACTCTACTTCTTCGCAAGTG 58.098 45.455 4.93 0.00 37.20 3.16
270 271 4.038162 ACTTCACTCTACTTCTTCGCAAGT 59.962 41.667 0.00 0.00 39.94 3.16
271 272 4.384247 CACTTCACTCTACTTCTTCGCAAG 59.616 45.833 0.00 0.00 0.00 4.01
272 273 4.299155 CACTTCACTCTACTTCTTCGCAA 58.701 43.478 0.00 0.00 0.00 4.85
273 274 3.305403 CCACTTCACTCTACTTCTTCGCA 60.305 47.826 0.00 0.00 0.00 5.10
274 275 3.057456 TCCACTTCACTCTACTTCTTCGC 60.057 47.826 0.00 0.00 0.00 4.70
275 276 4.768130 TCCACTTCACTCTACTTCTTCG 57.232 45.455 0.00 0.00 0.00 3.79
276 277 6.425417 CCTTTTCCACTTCACTCTACTTCTTC 59.575 42.308 0.00 0.00 0.00 2.87
277 278 6.126739 ACCTTTTCCACTTCACTCTACTTCTT 60.127 38.462 0.00 0.00 0.00 2.52
278 279 5.367060 ACCTTTTCCACTTCACTCTACTTCT 59.633 40.000 0.00 0.00 0.00 2.85
279 280 5.612351 ACCTTTTCCACTTCACTCTACTTC 58.388 41.667 0.00 0.00 0.00 3.01
280 281 5.632034 ACCTTTTCCACTTCACTCTACTT 57.368 39.130 0.00 0.00 0.00 2.24
281 282 5.279556 GCTACCTTTTCCACTTCACTCTACT 60.280 44.000 0.00 0.00 0.00 2.57
282 283 4.930405 GCTACCTTTTCCACTTCACTCTAC 59.070 45.833 0.00 0.00 0.00 2.59
283 284 4.591498 TGCTACCTTTTCCACTTCACTCTA 59.409 41.667 0.00 0.00 0.00 2.43
284 285 3.391296 TGCTACCTTTTCCACTTCACTCT 59.609 43.478 0.00 0.00 0.00 3.24
285 286 3.740115 TGCTACCTTTTCCACTTCACTC 58.260 45.455 0.00 0.00 0.00 3.51
286 287 3.857157 TGCTACCTTTTCCACTTCACT 57.143 42.857 0.00 0.00 0.00 3.41
287 288 5.938125 TCTAATGCTACCTTTTCCACTTCAC 59.062 40.000 0.00 0.00 0.00 3.18
288 289 5.938125 GTCTAATGCTACCTTTTCCACTTCA 59.062 40.000 0.00 0.00 0.00 3.02
289 290 5.354513 GGTCTAATGCTACCTTTTCCACTTC 59.645 44.000 0.00 0.00 32.72 3.01
290 291 5.254115 GGTCTAATGCTACCTTTTCCACTT 58.746 41.667 0.00 0.00 32.72 3.16
291 292 4.623171 CGGTCTAATGCTACCTTTTCCACT 60.623 45.833 0.00 0.00 33.34 4.00
292 293 3.621715 CGGTCTAATGCTACCTTTTCCAC 59.378 47.826 0.00 0.00 33.34 4.02
293 294 3.262405 ACGGTCTAATGCTACCTTTTCCA 59.738 43.478 0.00 0.00 33.34 3.53
294 295 3.621715 CACGGTCTAATGCTACCTTTTCC 59.378 47.826 0.00 0.00 33.34 3.13
295 296 3.063588 GCACGGTCTAATGCTACCTTTTC 59.936 47.826 0.00 0.00 38.84 2.29
296 297 3.007635 GCACGGTCTAATGCTACCTTTT 58.992 45.455 0.00 0.00 38.84 2.27
297 298 2.027561 TGCACGGTCTAATGCTACCTTT 60.028 45.455 0.00 0.00 42.55 3.11
298 299 1.553248 TGCACGGTCTAATGCTACCTT 59.447 47.619 0.00 0.00 42.55 3.50
299 300 1.191535 TGCACGGTCTAATGCTACCT 58.808 50.000 0.00 0.00 42.55 3.08
300 301 2.240493 ATGCACGGTCTAATGCTACC 57.760 50.000 0.00 0.00 42.55 3.18
301 302 3.194861 TCAATGCACGGTCTAATGCTAC 58.805 45.455 0.00 0.00 42.55 3.58
302 303 3.535280 TCAATGCACGGTCTAATGCTA 57.465 42.857 0.00 0.00 42.55 3.49
303 304 2.401583 TCAATGCACGGTCTAATGCT 57.598 45.000 0.00 0.00 42.55 3.79
304 305 2.477863 GGTTCAATGCACGGTCTAATGC 60.478 50.000 0.00 0.00 42.40 3.56
305 306 2.097466 GGGTTCAATGCACGGTCTAATG 59.903 50.000 0.00 0.00 0.00 1.90
306 307 2.365582 GGGTTCAATGCACGGTCTAAT 58.634 47.619 0.00 0.00 0.00 1.73
307 308 1.612199 GGGGTTCAATGCACGGTCTAA 60.612 52.381 0.00 0.00 0.00 2.10
308 309 0.035820 GGGGTTCAATGCACGGTCTA 60.036 55.000 0.00 0.00 0.00 2.59
309 310 1.303317 GGGGTTCAATGCACGGTCT 60.303 57.895 0.00 0.00 0.00 3.85
310 311 1.303317 AGGGGTTCAATGCACGGTC 60.303 57.895 0.00 0.00 0.00 4.79
311 312 1.303317 GAGGGGTTCAATGCACGGT 60.303 57.895 0.00 0.00 0.00 4.83
312 313 0.609131 AAGAGGGGTTCAATGCACGG 60.609 55.000 0.00 0.00 0.00 4.94
313 314 1.737793 GTAAGAGGGGTTCAATGCACG 59.262 52.381 0.00 0.00 0.00 5.34
314 315 3.073274 AGTAAGAGGGGTTCAATGCAC 57.927 47.619 0.00 0.00 0.00 4.57
315 316 3.806949 AAGTAAGAGGGGTTCAATGCA 57.193 42.857 0.00 0.00 0.00 3.96
316 317 4.640647 CCTAAAGTAAGAGGGGTTCAATGC 59.359 45.833 0.00 0.00 0.00 3.56
317 318 4.640647 GCCTAAAGTAAGAGGGGTTCAATG 59.359 45.833 0.00 0.00 33.04 2.82
318 319 4.325109 GGCCTAAAGTAAGAGGGGTTCAAT 60.325 45.833 0.00 0.00 33.04 2.57
319 320 3.009805 GGCCTAAAGTAAGAGGGGTTCAA 59.990 47.826 0.00 0.00 33.04 2.69
320 321 2.574824 GGCCTAAAGTAAGAGGGGTTCA 59.425 50.000 0.00 0.00 33.04 3.18
321 322 2.574824 TGGCCTAAAGTAAGAGGGGTTC 59.425 50.000 3.32 0.00 33.04 3.62
322 323 2.639487 TGGCCTAAAGTAAGAGGGGTT 58.361 47.619 3.32 0.00 33.04 4.11
323 324 2.354261 TGGCCTAAAGTAAGAGGGGT 57.646 50.000 3.32 0.00 33.04 4.95
324 325 3.953542 ATTGGCCTAAAGTAAGAGGGG 57.046 47.619 3.32 0.00 33.04 4.79
325 326 6.605471 AAAAATTGGCCTAAAGTAAGAGGG 57.395 37.500 3.32 0.00 33.04 4.30
326 327 9.190317 AGATAAAAATTGGCCTAAAGTAAGAGG 57.810 33.333 3.32 0.00 35.78 3.69
328 329 9.975218 AGAGATAAAAATTGGCCTAAAGTAAGA 57.025 29.630 3.32 0.00 0.00 2.10
333 334 9.468532 GCATAAGAGATAAAAATTGGCCTAAAG 57.531 33.333 3.32 0.00 0.00 1.85
334 335 8.134895 CGCATAAGAGATAAAAATTGGCCTAAA 58.865 33.333 3.32 0.00 0.00 1.85
335 336 7.255451 CCGCATAAGAGATAAAAATTGGCCTAA 60.255 37.037 3.32 0.00 0.00 2.69
336 337 6.206634 CCGCATAAGAGATAAAAATTGGCCTA 59.793 38.462 3.32 0.00 0.00 3.93
337 338 5.010012 CCGCATAAGAGATAAAAATTGGCCT 59.990 40.000 3.32 0.00 0.00 5.19
338 339 5.221244 ACCGCATAAGAGATAAAAATTGGCC 60.221 40.000 0.00 0.00 0.00 5.36
339 340 5.831997 ACCGCATAAGAGATAAAAATTGGC 58.168 37.500 0.00 0.00 0.00 4.52
340 341 9.450807 CTTAACCGCATAAGAGATAAAAATTGG 57.549 33.333 0.53 0.00 35.35 3.16
389 390 3.299503 CCAGGATTTAAACATGAGGGGG 58.700 50.000 0.00 0.00 0.00 5.40
390 391 2.695147 GCCAGGATTTAAACATGAGGGG 59.305 50.000 0.00 0.00 0.00 4.79
391 392 3.633986 GAGCCAGGATTTAAACATGAGGG 59.366 47.826 0.00 0.00 0.00 4.30
392 393 3.633986 GGAGCCAGGATTTAAACATGAGG 59.366 47.826 0.00 0.00 0.00 3.86
393 394 3.313526 CGGAGCCAGGATTTAAACATGAG 59.686 47.826 0.00 0.00 0.00 2.90
394 395 3.278574 CGGAGCCAGGATTTAAACATGA 58.721 45.455 0.00 0.00 0.00 3.07
395 396 3.698029 CGGAGCCAGGATTTAAACATG 57.302 47.619 0.00 0.00 0.00 3.21
416 417 4.860881 TAGCTCTCAGCCCGGGGG 62.861 72.222 25.28 2.24 43.77 5.40
417 418 3.541713 GTAGCTCTCAGCCCGGGG 61.542 72.222 25.28 9.31 43.77 5.73
418 419 2.759973 TGTAGCTCTCAGCCCGGG 60.760 66.667 19.09 19.09 43.77 5.73
419 420 2.811101 CTGTAGCTCTCAGCCCGG 59.189 66.667 0.00 0.00 43.77 5.73
455 456 1.482182 CCCTCGATGACCATGTTGAGA 59.518 52.381 0.83 0.00 0.00 3.27
458 459 1.431488 CGCCCTCGATGACCATGTTG 61.431 60.000 0.00 0.00 38.10 3.33
459 460 1.153369 CGCCCTCGATGACCATGTT 60.153 57.895 0.00 0.00 38.10 2.71
460 461 2.021068 CTCGCCCTCGATGACCATGT 62.021 60.000 0.00 0.00 44.56 3.21
462 463 2.502492 CCTCGCCCTCGATGACCAT 61.502 63.158 0.00 0.00 44.56 3.55
471 472 2.436824 GGCAAAGTCCTCGCCCTC 60.437 66.667 0.00 0.00 40.07 4.30
566 567 0.319555 TCTGTCTTCGCTTTGGGTCG 60.320 55.000 0.00 0.00 0.00 4.79
602 603 9.965824 CCGAATAGTTTATTTCATAATTTGGCT 57.034 29.630 0.00 0.00 0.00 4.75
603 604 9.959749 TCCGAATAGTTTATTTCATAATTTGGC 57.040 29.630 0.00 0.00 0.00 4.52
611 612 8.621286 GGACAATGTCCGAATAGTTTATTTCAT 58.379 33.333 17.46 0.00 43.14 2.57
612 613 7.981142 GGACAATGTCCGAATAGTTTATTTCA 58.019 34.615 17.46 0.00 43.14 2.69
1129 1487 1.828660 CTAGGATCTCGGTGGCGGT 60.829 63.158 0.00 0.00 0.00 5.68
1752 2110 2.321719 TGCACAAGAGGGTACACAGTA 58.678 47.619 0.00 0.00 0.00 2.74
1848 2206 1.076923 ACTCGCCTCCACCGTATCT 60.077 57.895 0.00 0.00 0.00 1.98
2187 2545 7.961326 AGATTTACCACAGGAAATTAGCAAT 57.039 32.000 0.00 0.00 0.00 3.56
2238 2596 7.350744 TCCTTAATACAATAGTTGCCTCGTA 57.649 36.000 0.00 0.00 0.00 3.43
2246 2607 9.004231 ACTTCCAGGATCCTTAATACAATAGTT 57.996 33.333 13.00 0.00 0.00 2.24
2250 2611 6.410853 CCCACTTCCAGGATCCTTAATACAAT 60.411 42.308 13.00 0.00 0.00 2.71
2251 2612 5.104109 CCCACTTCCAGGATCCTTAATACAA 60.104 44.000 13.00 0.00 0.00 2.41
2252 2613 4.412199 CCCACTTCCAGGATCCTTAATACA 59.588 45.833 13.00 0.00 0.00 2.29
2253 2614 4.747009 GCCCACTTCCAGGATCCTTAATAC 60.747 50.000 13.00 0.00 0.00 1.89
2254 2615 3.394606 GCCCACTTCCAGGATCCTTAATA 59.605 47.826 13.00 0.00 0.00 0.98
2280 2641 3.136009 ACAAACTTGGCTACCACTACC 57.864 47.619 0.00 0.00 30.78 3.18
2380 2741 1.453155 AGGCTAGCCATGTTTCAACG 58.547 50.000 34.70 0.00 38.92 4.10
2762 3124 9.784680 CAGAAGATCATCTTTTGTCCAAATAAG 57.215 33.333 9.37 0.00 36.73 1.73
3025 3594 4.351874 TGTATCACCTATGGGCTTAAGC 57.648 45.455 19.53 19.53 41.14 3.09
3056 3625 5.822519 TGCTTAATTTGAATGGATAGCGAGT 59.177 36.000 0.00 0.00 0.00 4.18
3138 3708 6.716934 TTTTACATTGGCTCCACAAGTTAA 57.283 33.333 0.00 0.00 33.23 2.01
3241 3811 3.806949 AGTTGGCAGAATTACCTTCCA 57.193 42.857 0.00 0.00 34.11 3.53
3376 3948 3.831323 TGCATGGAAGGAAGAAACTGAA 58.169 40.909 0.00 0.00 0.00 3.02
3496 4068 2.936919 TGAACAGAGACACCTGCATT 57.063 45.000 0.00 0.00 37.68 3.56
3853 4425 0.950836 CTGTCCAATTCAACGCACCA 59.049 50.000 0.00 0.00 0.00 4.17
3922 4494 0.173935 CATAGGTACGCCCGTCACAA 59.826 55.000 0.00 0.00 38.74 3.33
4003 4575 6.058833 TGCACCAGTCTTAATTGTCTTTACA 58.941 36.000 0.00 0.00 0.00 2.41
4195 5091 9.282247 GCAAAACAAGAATATTATGAGAGTGTG 57.718 33.333 7.52 0.00 0.00 3.82
4196 5092 9.236006 AGCAAAACAAGAATATTATGAGAGTGT 57.764 29.630 7.52 0.00 0.00 3.55
4212 5108 4.843220 AGGTGAGATCAAGCAAAACAAG 57.157 40.909 0.00 0.00 0.00 3.16
4228 5124 5.979993 TGTTGTTGTTGTAGAACTAGGTGA 58.020 37.500 4.21 0.00 32.79 4.02
4259 5158 5.202004 TGTTTGGGACTAAAGGCTTTGTTA 58.798 37.500 22.32 1.59 0.00 2.41
4375 5275 5.980715 GGAGTATCAGCAAAGAACTAGCTAC 59.019 44.000 0.00 0.00 36.73 3.58
4390 5290 8.365060 AGAGATATGAAGGATTGGAGTATCAG 57.635 38.462 0.00 0.00 36.25 2.90
4464 5365 1.660333 GCTAAAGCGTGCGGATAATGC 60.660 52.381 0.00 0.00 0.00 3.56
4501 5402 0.545309 ACACAGGCCTCCAGAAGCTA 60.545 55.000 0.00 0.00 0.00 3.32
4521 5423 4.037208 GTCTGAGATGGTTTGGGCATATTG 59.963 45.833 0.00 0.00 0.00 1.90
4585 5487 9.227490 GTTCGAAATGATGATATACGAGATAGG 57.773 37.037 0.00 0.00 0.00 2.57
4609 5511 1.202582 CACACGAGGAAGGATCGAGTT 59.797 52.381 1.94 0.00 41.07 3.01
4697 5601 2.184020 TATGGCGCTGAGTGTTGGCT 62.184 55.000 7.64 0.00 0.00 4.75
5144 6056 3.055891 CCCTTATCTTTTTGCCTTGGTGG 60.056 47.826 0.00 0.00 39.35 4.61
5175 6088 0.824109 TAGGACTGCATCAAGGGTCG 59.176 55.000 0.00 0.00 0.00 4.79
5240 6153 7.094508 ACAATAATGTTGTGACAACTGACAA 57.905 32.000 26.50 8.79 39.66 3.18
5241 6154 6.691754 ACAATAATGTTGTGACAACTGACA 57.308 33.333 26.50 9.99 39.66 3.58
5242 6155 7.635423 TGTACAATAATGTTGTGACAACTGAC 58.365 34.615 26.50 15.76 41.05 3.51
5243 6156 7.793927 TGTACAATAATGTTGTGACAACTGA 57.206 32.000 26.50 13.54 41.05 3.41
5244 6157 8.075574 ACATGTACAATAATGTTGTGACAACTG 58.924 33.333 26.50 18.62 41.05 3.16
5245 6158 8.165239 ACATGTACAATAATGTTGTGACAACT 57.835 30.769 26.50 12.06 41.05 3.16
5246 6159 7.537306 GGACATGTACAATAATGTTGTGACAAC 59.463 37.037 20.81 20.81 41.05 3.32
5400 6328 5.171147 ACGACAACTTATGGAGAGATACG 57.829 43.478 0.00 0.00 0.00 3.06
5424 6352 2.027837 ACCATGGAAGCCATTTTCTTGC 60.028 45.455 21.47 0.00 42.23 4.01
5447 6375 1.358787 TGATTTCATGCCTGGGAGGTT 59.641 47.619 0.00 0.00 37.80 3.50
5465 6393 3.380004 AGCGTGACCAAAAATCAGTTTGA 59.620 39.130 0.00 0.00 40.29 2.69
5516 6444 1.036707 ATGAAGCTACGGGAGAGAGC 58.963 55.000 0.00 0.00 40.81 4.09
5526 6454 5.059161 TGATGAGCCATACAATGAAGCTAC 58.941 41.667 0.00 0.00 32.97 3.58
5564 6492 7.557719 AGGGGATGTTCAGAGTTGTATTAATTG 59.442 37.037 0.00 0.00 0.00 2.32
5570 6498 4.289672 ACAAGGGGATGTTCAGAGTTGTAT 59.710 41.667 0.00 0.00 0.00 2.29
5614 6543 3.181485 CCAGAAGAATGGAGACGGAGTAC 60.181 52.174 0.00 0.00 42.42 2.73
5637 6566 6.628919 GGTAAAGCCTTGACAAAGTAGAAA 57.371 37.500 0.00 0.00 0.00 2.52
5797 6728 8.918202 AAACTGAAGAACTAATGACACCATTA 57.082 30.769 0.00 0.00 42.56 1.90
5835 6766 9.753674 TTAAATATAGGCCAATCTGGATTTAGG 57.246 33.333 5.01 0.00 40.96 2.69
5946 6878 5.526846 GTCATCAGCTAAAAGAGGATCAAGG 59.473 44.000 0.00 0.00 37.82 3.61
6317 7250 5.741388 ATGCATGTTCGTAGAGAATTTCC 57.259 39.130 0.00 0.00 41.49 3.13
6393 7328 2.111384 CCTGTAGCATCACCTACACCT 58.889 52.381 0.00 0.00 41.89 4.00
6693 7628 2.949447 TCATCATCTCATCGGTCAGGA 58.051 47.619 0.00 0.00 0.00 3.86
6699 7634 4.388165 CGGAAAAGATCATCATCTCATCGG 59.612 45.833 0.00 0.00 38.55 4.18
6742 7677 6.225981 TGACACAGCAGTACAGATCAATAT 57.774 37.500 0.00 0.00 0.00 1.28
6770 7705 4.706842 ACCTAACCAGTGATCAACAGTT 57.293 40.909 0.00 3.87 33.53 3.16
7193 8131 5.692115 TTGTCTGCCCATTCTGACTAATA 57.308 39.130 0.00 0.00 36.35 0.98
7459 8421 1.051812 GCTAGATGGCCTGGCTCTTA 58.948 55.000 19.68 3.31 44.86 2.10
7486 8448 8.645110 ACTAGTAGTTAAGTTACTTGAAAGCCA 58.355 33.333 8.00 0.00 33.60 4.75
7637 8725 8.356533 AGCATTTTCCAAATAAATTAGATGCG 57.643 30.769 0.00 0.00 0.00 4.73
7863 8951 0.100503 GCTGACACCGCAAAACAACT 59.899 50.000 0.00 0.00 0.00 3.16
7872 8960 1.741770 CTTGTAGGGCTGACACCGC 60.742 63.158 0.00 0.00 0.00 5.68
8442 9532 1.065491 TCGGGCATGTATTCAACAGCT 60.065 47.619 0.00 0.00 42.70 4.24
8553 9643 0.586319 CTTCTTGCTCGGTTTTCGCA 59.414 50.000 0.00 0.00 39.05 5.10
8595 9685 0.107831 CAAACCCGTCCAACTCCTCA 59.892 55.000 0.00 0.00 0.00 3.86
8983 10100 5.048083 TCGATGGGATTTCCTTCAAAAACTG 60.048 40.000 0.00 0.00 39.06 3.16
9164 10363 1.685820 GGGAGGGAGTTGGGAGTTG 59.314 63.158 0.00 0.00 0.00 3.16
9242 10441 0.906066 TGTTATGGGGTAAGCGCTCA 59.094 50.000 12.06 3.76 0.00 4.26
9296 10495 2.125753 GCTCGCTGTCCAGACCAG 60.126 66.667 0.00 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.