Multiple sequence alignment - TraesCS4D01G090600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G090600 chr4D 100.000 2569 0 0 866 3434 65860326 65862894 0.000000e+00 4745.0
1 TraesCS4D01G090600 chr4D 100.000 453 0 0 1 453 65859461 65859913 0.000000e+00 837.0
2 TraesCS4D01G090600 chr4D 95.652 115 4 1 340 453 491956579 491956693 2.100000e-42 183.0
3 TraesCS4D01G090600 chr4D 95.349 43 2 0 2214 2256 65078979 65078937 6.150000e-08 69.4
4 TraesCS4D01G090600 chr4A 93.725 1976 98 18 866 2819 529635223 529633252 0.000000e+00 2939.0
5 TraesCS4D01G090600 chr4A 76.744 688 123 23 1056 1726 531105224 531104557 1.960000e-92 350.0
6 TraesCS4D01G090600 chr4A 97.814 183 4 0 2980 3162 529633254 529633072 1.990000e-82 316.0
7 TraesCS4D01G090600 chr4A 94.798 173 8 1 2817 2989 357678605 357678776 5.650000e-68 268.0
8 TraesCS4D01G090600 chr4A 92.857 182 13 0 2815 2996 582530144 582529963 7.310000e-67 265.0
9 TraesCS4D01G090600 chr4A 88.421 190 20 2 2818 3006 702148198 702148010 9.590000e-56 228.0
10 TraesCS4D01G090600 chr4B 93.124 1018 37 9 866 1876 96630355 96631346 0.000000e+00 1461.0
11 TraesCS4D01G090600 chr4B 94.185 791 43 3 1866 2655 96631375 96632163 0.000000e+00 1203.0
12 TraesCS4D01G090600 chr4B 92.823 209 12 3 132 338 96630103 96630310 2.000000e-77 300.0
13 TraesCS4D01G090600 chr4B 91.935 186 11 4 2818 3002 389466943 389466761 1.220000e-64 257.0
14 TraesCS4D01G090600 chr4B 95.652 115 3 2 339 453 37255833 37255721 2.100000e-42 183.0
15 TraesCS4D01G090600 chr2D 88.304 684 72 7 1049 1728 55315407 55316086 0.000000e+00 813.0
16 TraesCS4D01G090600 chr2D 87.444 669 75 7 1064 1728 39832029 39831366 0.000000e+00 761.0
17 TraesCS4D01G090600 chr2D 99.291 282 1 1 3153 3434 536222291 536222011 3.060000e-140 508.0
18 TraesCS4D01G090600 chr2D 82.376 505 78 8 1920 2423 55316257 55316751 2.450000e-116 429.0
19 TraesCS4D01G090600 chr2D 78.394 685 120 24 1053 1725 476912929 476913597 1.470000e-113 420.0
20 TraesCS4D01G090600 chr2D 94.139 273 15 1 3163 3434 374140950 374140678 6.860000e-112 414.0
21 TraesCS4D01G090600 chr2D 81.569 510 85 8 1920 2423 39831196 39830690 2.470000e-111 412.0
22 TraesCS4D01G090600 chr2D 85.446 213 31 0 1053 1265 55360263 55360051 4.460000e-54 222.0
23 TraesCS4D01G090600 chr2A 87.865 684 75 7 1049 1728 56916689 56917368 0.000000e+00 797.0
24 TraesCS4D01G090600 chr2A 83.594 512 74 9 1920 2424 56917539 56918047 4.010000e-129 472.0
25 TraesCS4D01G090600 chr2A 78.426 686 122 23 1053 1725 619238299 619238971 1.140000e-114 424.0
26 TraesCS4D01G090600 chr2B 87.500 672 78 5 1064 1732 87841303 87841971 0.000000e+00 771.0
27 TraesCS4D01G090600 chr2B 82.530 498 80 7 1930 2423 87842166 87842660 6.810000e-117 431.0
28 TraesCS4D01G090600 chr2B 88.832 197 16 6 2818 3013 90002233 90002042 1.590000e-58 237.0
29 TraesCS4D01G090600 chr7D 97.834 277 6 0 3158 3434 30326057 30325781 2.400000e-131 479.0
30 TraesCS4D01G090600 chr7D 94.182 275 15 1 3157 3431 607565143 607565416 5.300000e-113 418.0
31 TraesCS4D01G090600 chr5B 98.162 272 3 2 3163 3434 12569926 12569657 1.120000e-129 473.0
32 TraesCS4D01G090600 chr5B 89.119 193 16 5 2818 3007 570575715 570575525 5.730000e-58 235.0
33 TraesCS4D01G090600 chr5B 73.871 620 122 30 1118 1720 508351808 508351212 9.660000e-51 211.0
34 TraesCS4D01G090600 chr1D 97.482 278 6 1 3158 3434 108775631 108775908 1.120000e-129 473.0
35 TraesCS4D01G090600 chr1D 97.445 274 7 0 3161 3434 10790433 10790706 5.190000e-128 468.0
36 TraesCS4D01G090600 chr1D 95.294 170 8 0 2818 2987 178466470 178466301 1.570000e-68 270.0
37 TraesCS4D01G090600 chr1D 92.350 183 12 2 2821 3002 444346328 444346147 3.400000e-65 259.0
38 TraesCS4D01G090600 chr1D 94.915 118 3 2 339 453 447917950 447918067 7.570000e-42 182.0
39 TraesCS4D01G090600 chr3D 97.436 273 7 0 3162 3434 175408449 175408721 1.870000e-127 466.0
40 TraesCS4D01G090600 chr3D 91.379 116 5 2 342 453 299998859 299998745 1.650000e-33 154.0
41 TraesCS4D01G090600 chr3B 96.667 270 8 1 3162 3431 691323107 691323375 6.760000e-122 448.0
42 TraesCS4D01G090600 chr3B 75.243 206 39 8 2223 2422 70980707 70980508 1.700000e-13 87.9
43 TraesCS4D01G090600 chr3B 93.878 49 3 0 2211 2259 799449236 799449284 1.320000e-09 75.0
44 TraesCS4D01G090600 chr5D 78.855 629 107 15 1114 1731 506210230 506210843 5.340000e-108 401.0
45 TraesCS4D01G090600 chr5D 91.979 187 11 4 2818 3002 368995523 368995339 3.400000e-65 259.0
46 TraesCS4D01G090600 chr5D 97.143 105 2 1 339 443 448581204 448581101 3.520000e-40 176.0
47 TraesCS4D01G090600 chr5A 94.286 175 10 0 2811 2985 382566809 382566635 5.650000e-68 268.0
48 TraesCS4D01G090600 chr5A 90.576 191 16 2 2815 3004 690414012 690414201 5.690000e-63 252.0
49 TraesCS4D01G090600 chr5A 74.862 545 107 26 1118 1654 535487604 535487082 1.600000e-53 220.0
50 TraesCS4D01G090600 chr6D 94.253 174 10 0 2809 2982 389700532 389700705 2.030000e-67 267.0
51 TraesCS4D01G090600 chr6D 93.714 175 10 1 2814 2987 32865338 32865164 9.450000e-66 261.0
52 TraesCS4D01G090600 chr1A 90.374 187 15 3 2818 3004 34971440 34971257 3.420000e-60 243.0
53 TraesCS4D01G090600 chrUn 88.482 191 20 2 2815 3004 57550015 57550204 2.670000e-56 230.0
54 TraesCS4D01G090600 chr7B 88.021 192 18 5 2815 3004 1256863 1256675 4.460000e-54 222.0
55 TraesCS4D01G090600 chr7B 87.895 190 20 3 2818 3005 85140218 85140030 1.600000e-53 220.0
56 TraesCS4D01G090600 chr3A 87.245 196 20 4 2816 3010 202826958 202826767 5.770000e-53 219.0
57 TraesCS4D01G090600 chr3A 75.728 206 44 5 2219 2421 77917801 77918003 7.840000e-17 99.0
58 TraesCS4D01G090600 chr6B 90.678 118 8 3 339 453 1361509 1361626 1.650000e-33 154.0
59 TraesCS4D01G090600 chr6B 90.833 120 4 4 339 453 47457376 47457493 1.650000e-33 154.0
60 TraesCS4D01G090600 chr1B 90.435 115 10 1 339 453 26618752 26618865 2.130000e-32 150.0
61 TraesCS4D01G090600 chr1B 90.476 105 9 1 339 443 142129762 142129659 1.660000e-28 137.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G090600 chr4D 65859461 65862894 3433 False 2791.0 4745 100.000000 1 3434 2 chr4D.!!$F2 3433
1 TraesCS4D01G090600 chr4A 529633072 529635223 2151 True 1627.5 2939 95.769500 866 3162 2 chr4A.!!$R4 2296
2 TraesCS4D01G090600 chr4A 531104557 531105224 667 True 350.0 350 76.744000 1056 1726 1 chr4A.!!$R1 670
3 TraesCS4D01G090600 chr4B 96630103 96632163 2060 False 988.0 1461 93.377333 132 2655 3 chr4B.!!$F1 2523
4 TraesCS4D01G090600 chr2D 55315407 55316751 1344 False 621.0 813 85.340000 1049 2423 2 chr2D.!!$F2 1374
5 TraesCS4D01G090600 chr2D 39830690 39832029 1339 True 586.5 761 84.506500 1064 2423 2 chr2D.!!$R4 1359
6 TraesCS4D01G090600 chr2D 476912929 476913597 668 False 420.0 420 78.394000 1053 1725 1 chr2D.!!$F1 672
7 TraesCS4D01G090600 chr2A 56916689 56918047 1358 False 634.5 797 85.729500 1049 2424 2 chr2A.!!$F2 1375
8 TraesCS4D01G090600 chr2A 619238299 619238971 672 False 424.0 424 78.426000 1053 1725 1 chr2A.!!$F1 672
9 TraesCS4D01G090600 chr2B 87841303 87842660 1357 False 601.0 771 85.015000 1064 2423 2 chr2B.!!$F1 1359
10 TraesCS4D01G090600 chr5B 508351212 508351808 596 True 211.0 211 73.871000 1118 1720 1 chr5B.!!$R2 602
11 TraesCS4D01G090600 chr5D 506210230 506210843 613 False 401.0 401 78.855000 1114 1731 1 chr5D.!!$F1 617
12 TraesCS4D01G090600 chr5A 535487082 535487604 522 True 220.0 220 74.862000 1118 1654 1 chr5A.!!$R2 536

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
85 86 0.180406 GGGGTCATCGTAATGGCAGT 59.820 55.0 0.00 0.0 39.36 4.40 F
343 346 0.238553 GGAACTCGAACAGGCAAAGC 59.761 55.0 0.00 0.0 0.00 3.51 F
379 382 0.251787 CCCCAGCCTTGGCTAGTTTT 60.252 55.0 14.35 0.0 43.58 2.43 F
1890 2020 0.318869 ACGGCGACATTAACACGTCA 60.319 50.0 16.62 0.0 32.24 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1947 2077 1.004745 GGGAGGAAGATGCACAAGGAA 59.995 52.381 0.00 0.00 0.00 3.36 R
2346 2480 2.107950 TGAAGTAGGCAAACGGATGG 57.892 50.000 0.00 0.00 0.00 3.51 R
2424 2559 4.261801 TCTGCCTACAATGCTAACTTTCC 58.738 43.478 0.00 0.00 0.00 3.13 R
3372 3509 0.040781 ACACATTTCGAAAACCGCCG 60.041 50.000 15.66 3.43 38.37 6.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.665459 GCACTCCATAAACTATGTCAGAGT 58.335 41.667 0.00 0.00 36.38 3.24
24 25 5.521735 GCACTCCATAAACTATGTCAGAGTG 59.478 44.000 17.94 17.94 45.48 3.51
25 26 6.634805 CACTCCATAAACTATGTCAGAGTGT 58.365 40.000 15.88 0.00 42.09 3.55
26 27 6.754209 CACTCCATAAACTATGTCAGAGTGTC 59.246 42.308 15.88 0.00 42.09 3.67
27 28 6.437477 ACTCCATAAACTATGTCAGAGTGTCA 59.563 38.462 0.00 0.00 35.40 3.58
28 29 7.124901 ACTCCATAAACTATGTCAGAGTGTCAT 59.875 37.037 0.00 0.00 35.40 3.06
29 30 7.851228 TCCATAAACTATGTCAGAGTGTCATT 58.149 34.615 0.00 0.00 34.36 2.57
30 31 8.321353 TCCATAAACTATGTCAGAGTGTCATTT 58.679 33.333 0.00 0.00 34.36 2.32
31 32 8.607459 CCATAAACTATGTCAGAGTGTCATTTC 58.393 37.037 0.00 0.00 34.36 2.17
32 33 9.154847 CATAAACTATGTCAGAGTGTCATTTCA 57.845 33.333 0.00 0.00 29.55 2.69
33 34 7.664082 AAACTATGTCAGAGTGTCATTTCAG 57.336 36.000 0.00 0.00 29.55 3.02
34 35 5.174395 ACTATGTCAGAGTGTCATTTCAGC 58.826 41.667 0.00 0.00 29.55 4.26
35 36 3.473923 TGTCAGAGTGTCATTTCAGCA 57.526 42.857 0.00 0.00 0.00 4.41
36 37 4.011966 TGTCAGAGTGTCATTTCAGCAT 57.988 40.909 0.00 0.00 0.00 3.79
37 38 5.151297 TGTCAGAGTGTCATTTCAGCATA 57.849 39.130 0.00 0.00 0.00 3.14
38 39 5.550290 TGTCAGAGTGTCATTTCAGCATAA 58.450 37.500 0.00 0.00 0.00 1.90
39 40 5.997129 TGTCAGAGTGTCATTTCAGCATAAA 59.003 36.000 0.00 0.00 0.00 1.40
40 41 6.486320 TGTCAGAGTGTCATTTCAGCATAAAA 59.514 34.615 0.00 0.00 0.00 1.52
41 42 7.175467 TGTCAGAGTGTCATTTCAGCATAAAAT 59.825 33.333 0.00 0.00 0.00 1.82
42 43 7.695618 GTCAGAGTGTCATTTCAGCATAAAATC 59.304 37.037 0.00 0.00 0.00 2.17
43 44 7.391275 TCAGAGTGTCATTTCAGCATAAAATCA 59.609 33.333 0.00 0.00 0.00 2.57
44 45 8.188799 CAGAGTGTCATTTCAGCATAAAATCAT 58.811 33.333 0.00 0.00 0.00 2.45
45 46 8.404000 AGAGTGTCATTTCAGCATAAAATCATC 58.596 33.333 0.00 0.00 0.00 2.92
46 47 7.191551 AGTGTCATTTCAGCATAAAATCATCG 58.808 34.615 0.00 0.00 0.00 3.84
47 48 6.968904 GTGTCATTTCAGCATAAAATCATCGT 59.031 34.615 0.00 0.00 0.00 3.73
48 49 8.122330 GTGTCATTTCAGCATAAAATCATCGTA 58.878 33.333 0.00 0.00 0.00 3.43
49 50 8.672815 TGTCATTTCAGCATAAAATCATCGTAA 58.327 29.630 0.00 0.00 0.00 3.18
50 51 9.669353 GTCATTTCAGCATAAAATCATCGTAAT 57.331 29.630 0.00 0.00 0.00 1.89
51 52 9.667989 TCATTTCAGCATAAAATCATCGTAATG 57.332 29.630 0.00 0.00 0.00 1.90
52 53 8.908678 CATTTCAGCATAAAATCATCGTAATGG 58.091 33.333 0.00 0.00 33.42 3.16
53 54 6.000891 TCAGCATAAAATCATCGTAATGGC 57.999 37.500 0.00 0.00 33.42 4.40
54 55 5.530543 TCAGCATAAAATCATCGTAATGGCA 59.469 36.000 0.00 0.00 33.42 4.92
55 56 5.854866 CAGCATAAAATCATCGTAATGGCAG 59.145 40.000 0.00 0.00 33.42 4.85
56 57 5.532406 AGCATAAAATCATCGTAATGGCAGT 59.468 36.000 0.00 0.00 33.42 4.40
57 58 6.039717 AGCATAAAATCATCGTAATGGCAGTT 59.960 34.615 0.00 0.00 33.42 3.16
58 59 6.697019 GCATAAAATCATCGTAATGGCAGTTT 59.303 34.615 0.00 0.00 33.42 2.66
59 60 7.222611 GCATAAAATCATCGTAATGGCAGTTTT 59.777 33.333 0.00 0.00 33.42 2.43
60 61 9.086336 CATAAAATCATCGTAATGGCAGTTTTT 57.914 29.630 0.00 0.00 33.42 1.94
76 77 4.484987 TTTTTGCGGGGTCATCGT 57.515 50.000 0.00 0.00 0.00 3.73
77 78 3.627645 TTTTTGCGGGGTCATCGTA 57.372 47.368 0.00 0.00 0.00 3.43
78 79 1.893544 TTTTTGCGGGGTCATCGTAA 58.106 45.000 0.00 0.00 0.00 3.18
79 80 2.116827 TTTTGCGGGGTCATCGTAAT 57.883 45.000 0.00 0.00 32.87 1.89
80 81 1.374560 TTTGCGGGGTCATCGTAATG 58.625 50.000 0.00 0.00 32.87 1.90
81 82 0.462937 TTGCGGGGTCATCGTAATGG 60.463 55.000 0.00 0.00 33.42 3.16
82 83 2.251642 GCGGGGTCATCGTAATGGC 61.252 63.158 0.00 0.00 36.74 4.40
83 84 1.145156 CGGGGTCATCGTAATGGCA 59.855 57.895 0.00 0.00 39.36 4.92
84 85 0.880278 CGGGGTCATCGTAATGGCAG 60.880 60.000 0.00 0.00 39.36 4.85
85 86 0.180406 GGGGTCATCGTAATGGCAGT 59.820 55.000 0.00 0.00 39.36 4.40
86 87 1.408266 GGGGTCATCGTAATGGCAGTT 60.408 52.381 0.00 0.00 39.36 3.16
87 88 2.158871 GGGGTCATCGTAATGGCAGTTA 60.159 50.000 0.00 0.00 39.36 2.24
88 89 3.496160 GGGGTCATCGTAATGGCAGTTAT 60.496 47.826 0.00 0.00 39.36 1.89
89 90 4.134563 GGGTCATCGTAATGGCAGTTATT 58.865 43.478 0.00 0.00 39.36 1.40
90 91 5.302360 GGGTCATCGTAATGGCAGTTATTA 58.698 41.667 0.00 0.00 39.36 0.98
91 92 5.938125 GGGTCATCGTAATGGCAGTTATTAT 59.062 40.000 0.00 0.00 39.36 1.28
92 93 7.101054 GGGTCATCGTAATGGCAGTTATTATA 58.899 38.462 0.00 0.00 39.36 0.98
93 94 7.277981 GGGTCATCGTAATGGCAGTTATTATAG 59.722 40.741 0.00 0.00 39.36 1.31
94 95 7.817962 GGTCATCGTAATGGCAGTTATTATAGT 59.182 37.037 0.00 0.00 39.36 2.12
95 96 8.648097 GTCATCGTAATGGCAGTTATTATAGTG 58.352 37.037 0.00 0.00 37.45 2.74
96 97 8.581578 TCATCGTAATGGCAGTTATTATAGTGA 58.418 33.333 0.00 0.00 33.42 3.41
97 98 9.371136 CATCGTAATGGCAGTTATTATAGTGAT 57.629 33.333 0.00 0.00 0.00 3.06
98 99 9.944376 ATCGTAATGGCAGTTATTATAGTGATT 57.056 29.630 0.00 0.00 0.00 2.57
99 100 9.203421 TCGTAATGGCAGTTATTATAGTGATTG 57.797 33.333 0.00 0.00 0.00 2.67
100 101 8.443160 CGTAATGGCAGTTATTATAGTGATTGG 58.557 37.037 0.00 0.00 0.00 3.16
101 102 7.765695 AATGGCAGTTATTATAGTGATTGGG 57.234 36.000 0.00 0.00 0.00 4.12
102 103 5.070001 TGGCAGTTATTATAGTGATTGGGC 58.930 41.667 0.00 0.00 0.00 5.36
103 104 5.070001 GGCAGTTATTATAGTGATTGGGCA 58.930 41.667 0.00 0.00 0.00 5.36
104 105 5.711976 GGCAGTTATTATAGTGATTGGGCAT 59.288 40.000 0.00 0.00 0.00 4.40
105 106 6.884295 GGCAGTTATTATAGTGATTGGGCATA 59.116 38.462 0.00 0.00 0.00 3.14
106 107 7.557719 GGCAGTTATTATAGTGATTGGGCATAT 59.442 37.037 0.00 0.00 0.00 1.78
107 108 8.616076 GCAGTTATTATAGTGATTGGGCATATC 58.384 37.037 0.00 0.00 0.00 1.63
108 109 9.671279 CAGTTATTATAGTGATTGGGCATATCA 57.329 33.333 0.00 0.00 0.00 2.15
112 113 8.743085 ATTATAGTGATTGGGCATATCATGAC 57.257 34.615 0.00 0.00 34.75 3.06
113 114 4.719026 AGTGATTGGGCATATCATGACT 57.281 40.909 0.00 0.00 38.72 3.41
114 115 4.649692 AGTGATTGGGCATATCATGACTC 58.350 43.478 0.00 0.00 38.72 3.36
115 116 4.350225 AGTGATTGGGCATATCATGACTCT 59.650 41.667 0.00 0.00 38.72 3.24
116 117 4.454847 GTGATTGGGCATATCATGACTCTG 59.545 45.833 0.00 0.00 38.72 3.35
117 118 2.556144 TGGGCATATCATGACTCTGC 57.444 50.000 14.51 14.51 38.72 4.26
118 119 2.052468 TGGGCATATCATGACTCTGCT 58.948 47.619 19.52 0.00 38.72 4.24
119 120 3.242011 TGGGCATATCATGACTCTGCTA 58.758 45.455 19.52 10.56 38.72 3.49
120 121 3.260128 TGGGCATATCATGACTCTGCTAG 59.740 47.826 19.52 0.00 38.72 3.42
121 122 3.513119 GGGCATATCATGACTCTGCTAGA 59.487 47.826 19.52 0.00 38.72 2.43
122 123 4.161942 GGGCATATCATGACTCTGCTAGAT 59.838 45.833 19.52 0.00 38.72 1.98
123 124 5.110598 GGCATATCATGACTCTGCTAGATG 58.889 45.833 19.52 2.55 34.69 2.90
124 125 5.337410 GGCATATCATGACTCTGCTAGATGT 60.337 44.000 19.52 0.00 34.69 3.06
125 126 6.164876 GCATATCATGACTCTGCTAGATGTT 58.835 40.000 15.24 0.00 0.00 2.71
126 127 6.649973 GCATATCATGACTCTGCTAGATGTTT 59.350 38.462 15.24 0.00 0.00 2.83
127 128 7.172875 GCATATCATGACTCTGCTAGATGTTTT 59.827 37.037 15.24 0.00 0.00 2.43
128 129 9.053840 CATATCATGACTCTGCTAGATGTTTTT 57.946 33.333 0.00 0.00 0.00 1.94
130 131 7.834068 TCATGACTCTGCTAGATGTTTTTAC 57.166 36.000 0.00 0.00 0.00 2.01
151 152 7.715265 TTACAAAGAGCTCAATATCGAATCC 57.285 36.000 17.77 0.00 0.00 3.01
153 154 3.971245 AGAGCTCAATATCGAATCCCC 57.029 47.619 17.77 0.00 0.00 4.81
158 159 3.007398 GCTCAATATCGAATCCCCTGAGT 59.993 47.826 0.00 0.00 33.08 3.41
174 175 1.648467 GAGTTCATCCACTTGGCGCC 61.648 60.000 22.73 22.73 34.44 6.53
175 176 1.971167 GTTCATCCACTTGGCGCCA 60.971 57.895 29.03 29.03 34.44 5.69
176 177 1.228398 TTCATCCACTTGGCGCCAA 60.228 52.632 37.78 37.78 34.44 4.52
178 179 2.115052 ATCCACTTGGCGCCAACA 59.885 55.556 37.30 19.77 34.44 3.33
219 220 4.377021 ACAGAGAGCACACGACAAAATTA 58.623 39.130 0.00 0.00 0.00 1.40
242 245 9.669353 ATTAACAAAATCAGAAATATAGCTGCG 57.331 29.630 0.00 0.00 32.27 5.18
245 248 7.761409 ACAAAATCAGAAATATAGCTGCGAAA 58.239 30.769 0.00 0.00 32.27 3.46
268 271 4.319139 TTTTCTTGCTTAAGTGCATGCA 57.681 36.364 18.46 18.46 42.96 3.96
283 286 4.742201 GCACTGCGCGAAGAGGGA 62.742 66.667 24.02 0.00 34.27 4.20
342 345 1.884235 AGGAACTCGAACAGGCAAAG 58.116 50.000 0.00 0.00 0.00 2.77
343 346 0.238553 GGAACTCGAACAGGCAAAGC 59.761 55.000 0.00 0.00 0.00 3.51
345 348 0.947244 AACTCGAACAGGCAAAGCTG 59.053 50.000 0.00 0.00 0.00 4.24
355 358 3.373226 CAAAGCTGCAGGTGCCAT 58.627 55.556 20.97 0.00 41.18 4.40
356 359 1.080093 CAAAGCTGCAGGTGCCATG 60.080 57.895 20.97 12.41 41.18 3.66
357 360 2.280552 AAAGCTGCAGGTGCCATGG 61.281 57.895 20.97 7.63 41.18 3.66
376 379 3.017581 CCCCCAGCCTTGGCTAGT 61.018 66.667 14.35 0.00 43.58 2.57
377 380 2.616458 CCCCCAGCCTTGGCTAGTT 61.616 63.158 14.35 0.00 43.58 2.24
379 382 0.251787 CCCCAGCCTTGGCTAGTTTT 60.252 55.000 14.35 0.00 43.58 2.43
380 383 0.890683 CCCAGCCTTGGCTAGTTTTG 59.109 55.000 14.35 1.69 43.58 2.44
381 384 1.620822 CCAGCCTTGGCTAGTTTTGT 58.379 50.000 14.35 0.00 37.73 2.83
382 385 1.270550 CCAGCCTTGGCTAGTTTTGTG 59.729 52.381 14.35 0.23 37.73 3.33
383 386 2.229792 CAGCCTTGGCTAGTTTTGTGA 58.770 47.619 14.35 0.00 0.00 3.58
384 387 2.622942 CAGCCTTGGCTAGTTTTGTGAA 59.377 45.455 14.35 0.00 0.00 3.18
385 388 2.887152 AGCCTTGGCTAGTTTTGTGAAG 59.113 45.455 13.08 0.00 0.00 3.02
386 389 2.884639 GCCTTGGCTAGTTTTGTGAAGA 59.115 45.455 4.11 0.00 0.00 2.87
387 390 3.317993 GCCTTGGCTAGTTTTGTGAAGAA 59.682 43.478 4.11 0.00 0.00 2.52
388 391 4.021981 GCCTTGGCTAGTTTTGTGAAGAAT 60.022 41.667 4.11 0.00 0.00 2.40
389 392 5.509670 GCCTTGGCTAGTTTTGTGAAGAATT 60.510 40.000 4.11 0.00 0.00 2.17
390 393 6.515832 CCTTGGCTAGTTTTGTGAAGAATTT 58.484 36.000 0.00 0.00 0.00 1.82
391 394 6.986231 CCTTGGCTAGTTTTGTGAAGAATTTT 59.014 34.615 0.00 0.00 0.00 1.82
392 395 7.495606 CCTTGGCTAGTTTTGTGAAGAATTTTT 59.504 33.333 0.00 0.00 0.00 1.94
412 415 4.927267 TTTTTAGAGGGCTGAGATTGGA 57.073 40.909 0.00 0.00 0.00 3.53
413 416 5.456921 TTTTTAGAGGGCTGAGATTGGAT 57.543 39.130 0.00 0.00 0.00 3.41
414 417 5.456921 TTTTAGAGGGCTGAGATTGGATT 57.543 39.130 0.00 0.00 0.00 3.01
415 418 5.456921 TTTAGAGGGCTGAGATTGGATTT 57.543 39.130 0.00 0.00 0.00 2.17
416 419 5.456921 TTAGAGGGCTGAGATTGGATTTT 57.543 39.130 0.00 0.00 0.00 1.82
417 420 4.328118 AGAGGGCTGAGATTGGATTTTT 57.672 40.909 0.00 0.00 0.00 1.94
439 442 7.873699 TTTTTGGGTATTTTATCCCTTGGAA 57.126 32.000 0.00 0.00 43.74 3.53
440 443 7.873699 TTTTGGGTATTTTATCCCTTGGAAA 57.126 32.000 0.00 0.00 43.74 3.13
441 444 8.456221 TTTTGGGTATTTTATCCCTTGGAAAT 57.544 30.769 0.00 0.00 43.74 2.17
442 445 8.456221 TTTGGGTATTTTATCCCTTGGAAATT 57.544 30.769 0.00 0.00 43.74 1.82
443 446 7.430760 TGGGTATTTTATCCCTTGGAAATTG 57.569 36.000 0.00 0.00 43.74 2.32
444 447 7.192628 TGGGTATTTTATCCCTTGGAAATTGA 58.807 34.615 0.00 0.00 43.74 2.57
445 448 7.344352 TGGGTATTTTATCCCTTGGAAATTGAG 59.656 37.037 0.00 0.00 43.74 3.02
446 449 7.344612 GGGTATTTTATCCCTTGGAAATTGAGT 59.655 37.037 0.00 0.00 40.48 3.41
447 450 8.197439 GGTATTTTATCCCTTGGAAATTGAGTG 58.803 37.037 0.00 0.00 34.34 3.51
448 451 7.797121 ATTTTATCCCTTGGAAATTGAGTGT 57.203 32.000 0.00 0.00 34.34 3.55
449 452 7.610580 TTTTATCCCTTGGAAATTGAGTGTT 57.389 32.000 0.00 0.00 34.34 3.32
450 453 7.610580 TTTATCCCTTGGAAATTGAGTGTTT 57.389 32.000 0.00 0.00 34.34 2.83
451 454 7.610580 TTATCCCTTGGAAATTGAGTGTTTT 57.389 32.000 0.00 0.00 34.34 2.43
452 455 5.275067 TCCCTTGGAAATTGAGTGTTTTG 57.725 39.130 0.00 0.00 0.00 2.44
906 916 7.865706 AATACATACTTCAAACCCTTAGCAG 57.134 36.000 0.00 0.00 0.00 4.24
1011 1021 1.105167 TCGATACGATGGGCTTCCGT 61.105 55.000 0.00 0.00 39.94 4.69
1137 1153 2.626840 GACAGCAATCTGGTCTTCTCC 58.373 52.381 0.00 0.00 44.54 3.71
1749 1840 1.215647 GTTCCTGACGCGTGATCCT 59.784 57.895 20.70 0.00 0.00 3.24
1774 1865 2.436115 CCGCCCCGTTCTTTCCTC 60.436 66.667 0.00 0.00 0.00 3.71
1785 1876 1.004560 CTTTCCTCAGCGTGCTCCA 60.005 57.895 0.00 0.00 0.00 3.86
1800 1891 1.304217 TCCACTCCTCCGTCCTGAC 60.304 63.158 0.00 0.00 0.00 3.51
1810 1901 1.211212 TCCGTCCTGACCGATTCTCTA 59.789 52.381 0.00 0.00 0.00 2.43
1890 2020 0.318869 ACGGCGACATTAACACGTCA 60.319 50.000 16.62 0.00 32.24 4.35
1928 2058 6.035542 CCCAACAACAACATGAACAACTTTAC 59.964 38.462 0.00 0.00 0.00 2.01
1934 2064 5.654650 ACAACATGAACAACTTTACCTCCAA 59.345 36.000 0.00 0.00 0.00 3.53
1947 2077 1.564348 ACCTCCAACTCCACACAGTTT 59.436 47.619 0.00 0.00 34.17 2.66
1970 2100 2.190578 GTGCATCTTCCTCCCGGG 59.809 66.667 16.85 16.85 0.00 5.73
2346 2480 1.359459 GGGTGGATTTCGTCGCTGAC 61.359 60.000 0.00 0.00 0.00 3.51
2424 2559 0.246635 ATGTCGTTGACCCCTCGAAG 59.753 55.000 0.00 0.00 35.44 3.79
2444 2579 4.301072 AGGAAAGTTAGCATTGTAGGCA 57.699 40.909 0.00 0.00 0.00 4.75
2615 2752 6.017192 AGCATTTCAAAAGCGCCTTTAATTTT 60.017 30.769 2.29 0.00 31.99 1.82
2656 2793 4.222810 GCCTTTGAACCCTTGTCCATATTT 59.777 41.667 0.00 0.00 0.00 1.40
2657 2794 5.723295 CCTTTGAACCCTTGTCCATATTTG 58.277 41.667 0.00 0.00 0.00 2.32
2658 2795 5.480073 CCTTTGAACCCTTGTCCATATTTGA 59.520 40.000 0.00 0.00 0.00 2.69
2693 2830 0.947180 GGCGGTGAGTTCGTTGCTTA 60.947 55.000 0.00 0.00 0.00 3.09
2739 2876 9.239551 GGAGAATTTTTAGGTTGTATAGGTTGT 57.760 33.333 0.00 0.00 0.00 3.32
2784 2921 7.065563 TGTGTACGTTTTTACTGTACAAATGGT 59.934 33.333 17.97 13.52 46.96 3.55
2816 2953 4.571984 TGCAGTGATCACGGATATCTTTTG 59.428 41.667 27.24 13.76 36.20 2.44
2817 2954 4.572389 GCAGTGATCACGGATATCTTTTGT 59.428 41.667 27.24 0.00 36.20 2.83
2818 2955 5.753438 GCAGTGATCACGGATATCTTTTGTA 59.247 40.000 27.24 0.00 36.20 2.41
2819 2956 6.292381 GCAGTGATCACGGATATCTTTTGTAC 60.292 42.308 27.24 3.34 36.20 2.90
2820 2957 6.980978 CAGTGATCACGGATATCTTTTGTACT 59.019 38.462 19.83 0.00 36.20 2.73
2821 2958 7.168302 CAGTGATCACGGATATCTTTTGTACTC 59.832 40.741 19.83 0.00 36.20 2.59
2822 2959 6.421202 GTGATCACGGATATCTTTTGTACTCC 59.579 42.308 10.69 0.00 0.00 3.85
2823 2960 6.323996 TGATCACGGATATCTTTTGTACTCCT 59.676 38.462 2.05 0.00 0.00 3.69
2824 2961 6.540438 TCACGGATATCTTTTGTACTCCTT 57.460 37.500 2.05 0.00 0.00 3.36
2825 2962 6.570692 TCACGGATATCTTTTGTACTCCTTC 58.429 40.000 2.05 0.00 0.00 3.46
2826 2963 5.753921 CACGGATATCTTTTGTACTCCTTCC 59.246 44.000 2.05 0.00 0.00 3.46
2827 2964 4.982916 CGGATATCTTTTGTACTCCTTCCG 59.017 45.833 2.05 0.00 36.79 4.30
2828 2965 5.451520 CGGATATCTTTTGTACTCCTTCCGT 60.452 44.000 2.05 0.00 38.03 4.69
2829 2966 6.346896 GGATATCTTTTGTACTCCTTCCGTT 58.653 40.000 2.05 0.00 0.00 4.44
2830 2967 6.479331 GGATATCTTTTGTACTCCTTCCGTTC 59.521 42.308 2.05 0.00 0.00 3.95
2831 2968 3.999046 TCTTTTGTACTCCTTCCGTTCC 58.001 45.455 0.00 0.00 0.00 3.62
2832 2969 3.644738 TCTTTTGTACTCCTTCCGTTCCT 59.355 43.478 0.00 0.00 0.00 3.36
2833 2970 4.834496 TCTTTTGTACTCCTTCCGTTCCTA 59.166 41.667 0.00 0.00 0.00 2.94
2834 2971 5.305128 TCTTTTGTACTCCTTCCGTTCCTAA 59.695 40.000 0.00 0.00 0.00 2.69
2835 2972 5.549742 TTTGTACTCCTTCCGTTCCTAAA 57.450 39.130 0.00 0.00 0.00 1.85
2836 2973 5.750352 TTGTACTCCTTCCGTTCCTAAAT 57.250 39.130 0.00 0.00 0.00 1.40
2837 2974 6.855763 TTGTACTCCTTCCGTTCCTAAATA 57.144 37.500 0.00 0.00 0.00 1.40
2838 2975 7.427989 TTGTACTCCTTCCGTTCCTAAATAT 57.572 36.000 0.00 0.00 0.00 1.28
2839 2976 7.427989 TGTACTCCTTCCGTTCCTAAATATT 57.572 36.000 0.00 0.00 0.00 1.28
2840 2977 7.854337 TGTACTCCTTCCGTTCCTAAATATTT 58.146 34.615 5.89 5.89 0.00 1.40
2841 2978 7.767198 TGTACTCCTTCCGTTCCTAAATATTTG 59.233 37.037 11.05 1.40 0.00 2.32
2842 2979 6.718294 ACTCCTTCCGTTCCTAAATATTTGT 58.282 36.000 11.05 0.00 0.00 2.83
2843 2980 6.822170 ACTCCTTCCGTTCCTAAATATTTGTC 59.178 38.462 11.05 0.00 0.00 3.18
2844 2981 6.954232 TCCTTCCGTTCCTAAATATTTGTCT 58.046 36.000 11.05 0.00 0.00 3.41
2845 2982 7.399634 TCCTTCCGTTCCTAAATATTTGTCTT 58.600 34.615 11.05 0.00 0.00 3.01
2846 2983 7.886446 TCCTTCCGTTCCTAAATATTTGTCTTT 59.114 33.333 11.05 0.00 0.00 2.52
2847 2984 8.520351 CCTTCCGTTCCTAAATATTTGTCTTTT 58.480 33.333 11.05 0.00 0.00 2.27
2848 2985 9.908152 CTTCCGTTCCTAAATATTTGTCTTTTT 57.092 29.630 11.05 0.00 0.00 1.94
2863 3000 9.688592 ATTTGTCTTTTTAGAGATTTCAGCAAG 57.311 29.630 0.00 0.00 0.00 4.01
2864 3001 6.672147 TGTCTTTTTAGAGATTTCAGCAAGC 58.328 36.000 0.00 0.00 0.00 4.01
2865 3002 5.792468 GTCTTTTTAGAGATTTCAGCAAGCG 59.208 40.000 0.00 0.00 0.00 4.68
2866 3003 5.700832 TCTTTTTAGAGATTTCAGCAAGCGA 59.299 36.000 0.00 0.00 0.00 4.93
2867 3004 4.928661 TTTAGAGATTTCAGCAAGCGAC 57.071 40.909 0.00 0.00 0.00 5.19
2868 3005 2.758736 AGAGATTTCAGCAAGCGACT 57.241 45.000 0.00 0.00 0.00 4.18
2869 3006 3.876274 AGAGATTTCAGCAAGCGACTA 57.124 42.857 0.00 0.00 0.00 2.59
2870 3007 4.399004 AGAGATTTCAGCAAGCGACTAT 57.601 40.909 0.00 0.00 0.00 2.12
2871 3008 5.521906 AGAGATTTCAGCAAGCGACTATA 57.478 39.130 0.00 0.00 0.00 1.31
2872 3009 6.095432 AGAGATTTCAGCAAGCGACTATAT 57.905 37.500 0.00 0.00 0.00 0.86
2873 3010 7.220741 AGAGATTTCAGCAAGCGACTATATA 57.779 36.000 0.00 0.00 0.00 0.86
2874 3011 7.087639 AGAGATTTCAGCAAGCGACTATATAC 58.912 38.462 0.00 0.00 0.00 1.47
2875 3012 5.859114 AGATTTCAGCAAGCGACTATATACG 59.141 40.000 0.00 0.00 0.00 3.06
2876 3013 4.823790 TTCAGCAAGCGACTATATACGA 57.176 40.909 0.00 0.00 0.00 3.43
2877 3014 4.823790 TCAGCAAGCGACTATATACGAA 57.176 40.909 0.00 0.00 0.00 3.85
2878 3015 4.784329 TCAGCAAGCGACTATATACGAAG 58.216 43.478 0.00 0.00 0.00 3.79
2879 3016 3.362237 CAGCAAGCGACTATATACGAAGC 59.638 47.826 0.00 0.00 0.00 3.86
2880 3017 3.004419 AGCAAGCGACTATATACGAAGCA 59.996 43.478 0.00 0.00 0.00 3.91
2881 3018 3.734231 GCAAGCGACTATATACGAAGCAA 59.266 43.478 0.00 0.00 0.00 3.91
2882 3019 4.208460 GCAAGCGACTATATACGAAGCAAA 59.792 41.667 0.00 0.00 0.00 3.68
2883 3020 5.276678 GCAAGCGACTATATACGAAGCAAAA 60.277 40.000 0.00 0.00 0.00 2.44
2884 3021 6.564125 GCAAGCGACTATATACGAAGCAAAAT 60.564 38.462 0.00 0.00 0.00 1.82
2885 3022 7.358931 GCAAGCGACTATATACGAAGCAAAATA 60.359 37.037 0.00 0.00 0.00 1.40
2886 3023 8.484799 CAAGCGACTATATACGAAGCAAAATAA 58.515 33.333 0.00 0.00 0.00 1.40
2887 3024 8.228921 AGCGACTATATACGAAGCAAAATAAG 57.771 34.615 0.00 0.00 0.00 1.73
2888 3025 7.866393 AGCGACTATATACGAAGCAAAATAAGT 59.134 33.333 0.00 0.00 0.00 2.24
2889 3026 7.945178 GCGACTATATACGAAGCAAAATAAGTG 59.055 37.037 0.00 0.00 0.00 3.16
2890 3027 9.177304 CGACTATATACGAAGCAAAATAAGTGA 57.823 33.333 0.00 0.00 0.00 3.41
2897 3034 7.667043 ACGAAGCAAAATAAGTGAATCTACA 57.333 32.000 0.00 0.00 0.00 2.74
2898 3035 7.519002 ACGAAGCAAAATAAGTGAATCTACAC 58.481 34.615 0.00 0.00 40.60 2.90
2911 3048 8.764524 AGTGAATCTACACTCTAAAACATGTC 57.235 34.615 0.00 0.00 46.36 3.06
2912 3049 8.589338 AGTGAATCTACACTCTAAAACATGTCT 58.411 33.333 0.00 0.00 46.36 3.41
2913 3050 9.856488 GTGAATCTACACTCTAAAACATGTCTA 57.144 33.333 0.00 0.00 37.73 2.59
2929 3066 9.639601 AAACATGTCTATATACATCCGTATGTG 57.360 33.333 3.56 0.00 45.99 3.21
2930 3067 7.772166 ACATGTCTATATACATCCGTATGTGG 58.228 38.462 3.56 0.00 45.99 4.17
2931 3068 7.396339 ACATGTCTATATACATCCGTATGTGGT 59.604 37.037 3.56 0.00 45.99 4.16
2932 3069 8.899771 CATGTCTATATACATCCGTATGTGGTA 58.100 37.037 3.56 0.00 45.99 3.25
2933 3070 8.502105 TGTCTATATACATCCGTATGTGGTAG 57.498 38.462 3.56 3.93 45.99 3.18
2934 3071 8.105197 TGTCTATATACATCCGTATGTGGTAGT 58.895 37.037 3.56 0.00 45.99 2.73
2935 3072 8.610896 GTCTATATACATCCGTATGTGGTAGTC 58.389 40.741 3.56 0.00 45.99 2.59
2936 3073 6.770746 ATATACATCCGTATGTGGTAGTCC 57.229 41.667 3.56 0.00 45.99 3.85
2937 3074 2.742348 ACATCCGTATGTGGTAGTCCA 58.258 47.619 0.00 0.00 44.79 4.02
2938 3075 3.305720 ACATCCGTATGTGGTAGTCCAT 58.694 45.455 0.00 0.00 44.79 3.41
2939 3076 3.709653 ACATCCGTATGTGGTAGTCCATT 59.290 43.478 0.00 0.00 44.79 3.16
2940 3077 4.163458 ACATCCGTATGTGGTAGTCCATTT 59.837 41.667 0.00 0.00 44.79 2.32
2941 3078 4.131649 TCCGTATGTGGTAGTCCATTTG 57.868 45.455 0.00 0.00 46.20 2.32
2942 3079 3.770388 TCCGTATGTGGTAGTCCATTTGA 59.230 43.478 0.00 0.00 46.20 2.69
2943 3080 4.223255 TCCGTATGTGGTAGTCCATTTGAA 59.777 41.667 0.00 0.00 46.20 2.69
2944 3081 4.938832 CCGTATGTGGTAGTCCATTTGAAA 59.061 41.667 0.00 0.00 46.20 2.69
2945 3082 5.588648 CCGTATGTGGTAGTCCATTTGAAAT 59.411 40.000 0.00 0.00 46.20 2.17
2946 3083 6.238374 CCGTATGTGGTAGTCCATTTGAAATC 60.238 42.308 0.00 0.00 46.20 2.17
2947 3084 6.538742 CGTATGTGGTAGTCCATTTGAAATCT 59.461 38.462 0.00 0.00 46.20 2.40
2948 3085 7.254455 CGTATGTGGTAGTCCATTTGAAATCTC 60.254 40.741 0.00 0.00 46.20 2.75
2949 3086 6.126863 TGTGGTAGTCCATTTGAAATCTCT 57.873 37.500 0.00 0.00 46.20 3.10
2950 3087 7.252612 TGTGGTAGTCCATTTGAAATCTCTA 57.747 36.000 0.00 0.00 46.20 2.43
2951 3088 7.685481 TGTGGTAGTCCATTTGAAATCTCTAA 58.315 34.615 0.00 0.00 46.20 2.10
2952 3089 8.160765 TGTGGTAGTCCATTTGAAATCTCTAAA 58.839 33.333 0.00 0.00 46.20 1.85
2953 3090 9.010029 GTGGTAGTCCATTTGAAATCTCTAAAA 57.990 33.333 0.00 0.00 46.20 1.52
2954 3091 9.581289 TGGTAGTCCATTTGAAATCTCTAAAAA 57.419 29.630 0.00 0.00 39.03 1.94
2958 3095 9.354673 AGTCCATTTGAAATCTCTAAAAAGACA 57.645 29.630 0.00 0.00 0.00 3.41
2959 3096 9.965824 GTCCATTTGAAATCTCTAAAAAGACAA 57.034 29.630 0.00 0.00 0.00 3.18
2976 3113 7.625828 AAAGACAAATATTTAGGAACGGAGG 57.374 36.000 0.00 0.00 0.00 4.30
2977 3114 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
2978 3115 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
3013 3150 3.114809 TCATGCTGCAAAGTTGTTTTCG 58.885 40.909 6.36 0.00 0.00 3.46
3016 3153 2.258755 GCTGCAAAGTTGTTTTCGTGT 58.741 42.857 0.00 0.00 0.00 4.49
3181 3318 7.827819 AAAATCCTAAAATCTAAAAAGCGGC 57.172 32.000 0.00 0.00 0.00 6.53
3182 3319 4.976224 TCCTAAAATCTAAAAAGCGGCC 57.024 40.909 0.00 0.00 0.00 6.13
3183 3320 3.375922 TCCTAAAATCTAAAAAGCGGCCG 59.624 43.478 24.05 24.05 0.00 6.13
3184 3321 2.647529 AAAATCTAAAAAGCGGCCGG 57.352 45.000 29.38 8.29 0.00 6.13
3185 3322 0.172578 AAATCTAAAAAGCGGCCGGC 59.827 50.000 29.38 21.18 44.05 6.13
3186 3323 1.663379 AATCTAAAAAGCGGCCGGCC 61.663 55.000 36.69 36.69 45.17 6.13
3187 3324 2.830186 ATCTAAAAAGCGGCCGGCCA 62.830 55.000 42.78 22.40 45.17 5.36
3188 3325 3.336715 CTAAAAAGCGGCCGGCCAC 62.337 63.158 42.78 35.20 45.17 5.01
3195 3332 4.708386 CGGCCGGCCACCAACTAA 62.708 66.667 42.78 0.00 35.37 2.24
3196 3333 3.060000 GGCCGGCCACCAACTAAC 61.060 66.667 40.73 8.62 35.81 2.34
3197 3334 2.281900 GCCGGCCACCAACTAACA 60.282 61.111 18.11 0.00 0.00 2.41
3198 3335 2.332654 GCCGGCCACCAACTAACAG 61.333 63.158 18.11 0.00 0.00 3.16
3199 3336 1.373435 CCGGCCACCAACTAACAGA 59.627 57.895 2.24 0.00 0.00 3.41
3200 3337 0.953960 CCGGCCACCAACTAACAGAC 60.954 60.000 2.24 0.00 0.00 3.51
3201 3338 0.250124 CGGCCACCAACTAACAGACA 60.250 55.000 2.24 0.00 0.00 3.41
3202 3339 1.235724 GGCCACCAACTAACAGACAC 58.764 55.000 0.00 0.00 0.00 3.67
3203 3340 0.865769 GCCACCAACTAACAGACACG 59.134 55.000 0.00 0.00 0.00 4.49
3204 3341 1.508632 CCACCAACTAACAGACACGG 58.491 55.000 0.00 0.00 0.00 4.94
3205 3342 1.508632 CACCAACTAACAGACACGGG 58.491 55.000 0.00 0.00 0.00 5.28
3206 3343 0.250166 ACCAACTAACAGACACGGGC 60.250 55.000 0.00 0.00 0.00 6.13
3207 3344 1.289109 CCAACTAACAGACACGGGCG 61.289 60.000 0.00 0.00 0.00 6.13
3208 3345 1.005394 AACTAACAGACACGGGCGG 60.005 57.895 0.00 0.00 0.00 6.13
3209 3346 2.813908 CTAACAGACACGGGCGGC 60.814 66.667 0.00 0.00 0.00 6.53
3210 3347 3.296709 CTAACAGACACGGGCGGCT 62.297 63.158 9.56 0.00 0.00 5.52
3211 3348 3.583276 TAACAGACACGGGCGGCTG 62.583 63.158 17.49 17.49 34.65 4.85
3213 3350 4.457496 CAGACACGGGCGGCTGAT 62.457 66.667 26.40 12.09 0.00 2.90
3214 3351 3.706373 AGACACGGGCGGCTGATT 61.706 61.111 26.40 10.36 0.00 2.57
3215 3352 3.195698 GACACGGGCGGCTGATTC 61.196 66.667 26.40 15.51 0.00 2.52
3216 3353 4.778143 ACACGGGCGGCTGATTCC 62.778 66.667 26.40 0.00 0.00 3.01
3217 3354 4.473520 CACGGGCGGCTGATTCCT 62.474 66.667 26.40 0.00 0.00 3.36
3218 3355 4.473520 ACGGGCGGCTGATTCCTG 62.474 66.667 26.40 2.11 0.00 3.86
3220 3357 4.115199 GGGCGGCTGATTCCTGGT 62.115 66.667 9.56 0.00 0.00 4.00
3221 3358 2.514824 GGCGGCTGATTCCTGGTC 60.515 66.667 0.00 0.00 0.00 4.02
3222 3359 2.892425 GCGGCTGATTCCTGGTCG 60.892 66.667 0.00 0.00 0.00 4.79
3223 3360 2.579201 CGGCTGATTCCTGGTCGT 59.421 61.111 0.00 0.00 0.00 4.34
3224 3361 1.079127 CGGCTGATTCCTGGTCGTT 60.079 57.895 0.00 0.00 0.00 3.85
3225 3362 1.084370 CGGCTGATTCCTGGTCGTTC 61.084 60.000 0.00 0.00 0.00 3.95
3226 3363 1.084370 GGCTGATTCCTGGTCGTTCG 61.084 60.000 0.00 0.00 0.00 3.95
3227 3364 0.108804 GCTGATTCCTGGTCGTTCGA 60.109 55.000 0.00 0.00 0.00 3.71
3228 3365 1.471676 GCTGATTCCTGGTCGTTCGAT 60.472 52.381 0.00 0.00 0.00 3.59
3229 3366 2.464865 CTGATTCCTGGTCGTTCGATC 58.535 52.381 0.00 0.00 0.00 3.69
3230 3367 1.202256 TGATTCCTGGTCGTTCGATCG 60.202 52.381 9.36 9.36 0.00 3.69
3231 3368 0.527817 ATTCCTGGTCGTTCGATCGC 60.528 55.000 11.09 6.42 0.00 4.58
3232 3369 2.860690 TTCCTGGTCGTTCGATCGCG 62.861 60.000 11.09 9.64 39.35 5.87
3233 3370 3.607987 CTGGTCGTTCGATCGCGC 61.608 66.667 11.09 0.00 37.46 6.86
3236 3373 3.607987 GTCGTTCGATCGCGCCAG 61.608 66.667 11.09 0.00 37.46 4.85
3261 3398 4.864334 GCCCAGATCCGCCAGGTG 62.864 72.222 0.00 0.00 39.05 4.00
3262 3399 4.864334 CCCAGATCCGCCAGGTGC 62.864 72.222 0.00 0.00 39.05 5.01
3263 3400 4.864334 CCAGATCCGCCAGGTGCC 62.864 72.222 0.00 0.00 39.05 5.01
3264 3401 4.100084 CAGATCCGCCAGGTGCCA 62.100 66.667 0.00 0.00 39.05 4.92
3265 3402 4.101448 AGATCCGCCAGGTGCCAC 62.101 66.667 0.00 0.00 39.05 5.01
3275 3412 3.249189 GGTGCCACCTGGTCTGGA 61.249 66.667 6.63 0.00 34.73 3.86
3276 3413 2.606587 GGTGCCACCTGGTCTGGAT 61.607 63.158 6.63 0.00 34.73 3.41
3277 3414 1.380302 GTGCCACCTGGTCTGGATT 59.620 57.895 7.49 0.00 37.57 3.01
3278 3415 0.962356 GTGCCACCTGGTCTGGATTG 60.962 60.000 7.49 0.00 37.57 2.67
3279 3416 1.379044 GCCACCTGGTCTGGATTGG 60.379 63.158 7.49 0.41 37.57 3.16
3280 3417 1.379044 CCACCTGGTCTGGATTGGC 60.379 63.158 0.00 0.00 0.00 4.52
3281 3418 1.379044 CACCTGGTCTGGATTGGCC 60.379 63.158 0.00 0.00 37.10 5.36
3282 3419 2.276740 CCTGGTCTGGATTGGCCC 59.723 66.667 0.00 0.00 34.97 5.80
3283 3420 2.276740 CTGGTCTGGATTGGCCCC 59.723 66.667 0.00 0.00 34.97 5.80
3284 3421 3.704231 CTGGTCTGGATTGGCCCCG 62.704 68.421 0.00 0.00 34.97 5.73
3286 3423 4.424711 GTCTGGATTGGCCCCGCA 62.425 66.667 0.00 0.00 34.97 5.69
3287 3424 4.424711 TCTGGATTGGCCCCGCAC 62.425 66.667 0.00 0.00 34.97 5.34
3314 3451 4.475527 GGGCGGTTGTCCATATCC 57.524 61.111 0.00 0.00 40.65 2.59
3315 3452 1.597027 GGGCGGTTGTCCATATCCG 60.597 63.158 0.00 0.00 40.65 4.18
3316 3453 1.597027 GGCGGTTGTCCATATCCGG 60.597 63.158 0.00 0.00 42.71 5.14
3317 3454 1.444250 GCGGTTGTCCATATCCGGA 59.556 57.895 6.61 6.61 42.71 5.14
3323 3460 1.366366 GTCCATATCCGGACGTGGG 59.634 63.158 27.81 18.37 45.77 4.61
3324 3461 2.030562 CCATATCCGGACGTGGGC 59.969 66.667 23.28 0.00 0.00 5.36
3325 3462 2.802724 CCATATCCGGACGTGGGCA 61.803 63.158 23.28 0.00 0.00 5.36
3326 3463 1.300931 CATATCCGGACGTGGGCAG 60.301 63.158 6.12 0.00 0.00 4.85
3327 3464 2.507854 ATATCCGGACGTGGGCAGG 61.508 63.158 6.12 0.00 0.00 4.85
3343 3480 4.029809 GGCCCACCTGTAAGCGGT 62.030 66.667 0.00 0.00 34.38 5.68
3344 3481 2.662070 GGCCCACCTGTAAGCGGTA 61.662 63.158 0.00 0.00 32.37 4.02
3345 3482 1.153429 GCCCACCTGTAAGCGGTAG 60.153 63.158 0.00 0.00 32.37 3.18
3346 3483 1.610554 GCCCACCTGTAAGCGGTAGA 61.611 60.000 0.00 0.00 32.37 2.59
3347 3484 0.460311 CCCACCTGTAAGCGGTAGAG 59.540 60.000 0.00 0.00 32.37 2.43
3348 3485 0.460311 CCACCTGTAAGCGGTAGAGG 59.540 60.000 10.85 10.85 46.70 3.69
3349 3486 1.471119 CACCTGTAAGCGGTAGAGGA 58.529 55.000 17.17 0.00 44.57 3.71
3350 3487 1.405821 CACCTGTAAGCGGTAGAGGAG 59.594 57.143 17.17 8.20 44.57 3.69
3351 3488 1.033574 CCTGTAAGCGGTAGAGGAGG 58.966 60.000 7.63 0.00 44.57 4.30
3352 3489 1.033574 CTGTAAGCGGTAGAGGAGGG 58.966 60.000 0.00 0.00 0.00 4.30
3353 3490 0.396695 TGTAAGCGGTAGAGGAGGGG 60.397 60.000 0.00 0.00 0.00 4.79
3354 3491 0.106318 GTAAGCGGTAGAGGAGGGGA 60.106 60.000 0.00 0.00 0.00 4.81
3355 3492 0.185416 TAAGCGGTAGAGGAGGGGAG 59.815 60.000 0.00 0.00 0.00 4.30
3356 3493 1.876546 AAGCGGTAGAGGAGGGGAGT 61.877 60.000 0.00 0.00 0.00 3.85
3357 3494 0.992431 AGCGGTAGAGGAGGGGAGTA 60.992 60.000 0.00 0.00 0.00 2.59
3358 3495 0.537828 GCGGTAGAGGAGGGGAGTAG 60.538 65.000 0.00 0.00 0.00 2.57
3359 3496 0.845337 CGGTAGAGGAGGGGAGTAGT 59.155 60.000 0.00 0.00 0.00 2.73
3360 3497 1.477195 CGGTAGAGGAGGGGAGTAGTG 60.477 61.905 0.00 0.00 0.00 2.74
3361 3498 1.133419 GGTAGAGGAGGGGAGTAGTGG 60.133 61.905 0.00 0.00 0.00 4.00
3362 3499 1.133419 GTAGAGGAGGGGAGTAGTGGG 60.133 61.905 0.00 0.00 0.00 4.61
3363 3500 1.075151 GAGGAGGGGAGTAGTGGGG 60.075 68.421 0.00 0.00 0.00 4.96
3364 3501 2.040779 GGAGGGGAGTAGTGGGGG 60.041 72.222 0.00 0.00 0.00 5.40
3365 3502 2.785703 GAGGGGAGTAGTGGGGGT 59.214 66.667 0.00 0.00 0.00 4.95
3366 3503 1.382833 GAGGGGAGTAGTGGGGGTC 60.383 68.421 0.00 0.00 0.00 4.46
3367 3504 2.762875 GGGGAGTAGTGGGGGTCG 60.763 72.222 0.00 0.00 0.00 4.79
3368 3505 2.038490 GGGAGTAGTGGGGGTCGT 59.962 66.667 0.00 0.00 0.00 4.34
3369 3506 2.356780 GGGAGTAGTGGGGGTCGTG 61.357 68.421 0.00 0.00 0.00 4.35
3370 3507 2.356780 GGAGTAGTGGGGGTCGTGG 61.357 68.421 0.00 0.00 0.00 4.94
3371 3508 2.284405 AGTAGTGGGGGTCGTGGG 60.284 66.667 0.00 0.00 0.00 4.61
3372 3509 4.091939 GTAGTGGGGGTCGTGGGC 62.092 72.222 0.00 0.00 0.00 5.36
3385 3522 4.931633 TGGGCGGCGGTTTTCGAA 62.932 61.111 9.78 0.00 42.43 3.71
3386 3523 3.662153 GGGCGGCGGTTTTCGAAA 61.662 61.111 9.78 6.47 42.43 3.46
3387 3524 2.564458 GGCGGCGGTTTTCGAAAT 59.436 55.556 12.12 0.00 42.43 2.17
3388 3525 1.799916 GGCGGCGGTTTTCGAAATG 60.800 57.895 12.12 6.20 42.43 2.32
3389 3526 1.081708 GCGGCGGTTTTCGAAATGT 60.082 52.632 12.12 0.00 42.43 2.71
3390 3527 1.334288 GCGGCGGTTTTCGAAATGTG 61.334 55.000 12.12 5.48 42.43 3.21
3391 3528 0.040781 CGGCGGTTTTCGAAATGTGT 60.041 50.000 12.12 0.00 42.43 3.72
3392 3529 1.404477 GGCGGTTTTCGAAATGTGTG 58.596 50.000 12.12 1.95 42.43 3.82
3393 3530 0.775861 GCGGTTTTCGAAATGTGTGC 59.224 50.000 12.12 8.19 42.43 4.57
3394 3531 1.404477 CGGTTTTCGAAATGTGTGCC 58.596 50.000 12.12 6.72 42.43 5.01
3395 3532 1.001815 CGGTTTTCGAAATGTGTGCCT 60.002 47.619 12.12 0.00 42.43 4.75
3396 3533 2.393764 GGTTTTCGAAATGTGTGCCTG 58.606 47.619 12.12 0.00 0.00 4.85
3397 3534 2.034053 GGTTTTCGAAATGTGTGCCTGA 59.966 45.455 12.12 0.00 0.00 3.86
3398 3535 3.490078 GGTTTTCGAAATGTGTGCCTGAA 60.490 43.478 12.12 0.00 0.00 3.02
3399 3536 4.109050 GTTTTCGAAATGTGTGCCTGAAA 58.891 39.130 12.12 0.00 0.00 2.69
3400 3537 4.582701 TTTCGAAATGTGTGCCTGAAAT 57.417 36.364 6.47 0.00 0.00 2.17
3401 3538 3.829886 TCGAAATGTGTGCCTGAAATC 57.170 42.857 0.00 0.00 0.00 2.17
3402 3539 2.487762 TCGAAATGTGTGCCTGAAATCC 59.512 45.455 0.00 0.00 0.00 3.01
3403 3540 2.415893 CGAAATGTGTGCCTGAAATCCC 60.416 50.000 0.00 0.00 0.00 3.85
3404 3541 2.610438 AATGTGTGCCTGAAATCCCT 57.390 45.000 0.00 0.00 0.00 4.20
3405 3542 2.134789 ATGTGTGCCTGAAATCCCTC 57.865 50.000 0.00 0.00 0.00 4.30
3406 3543 0.321564 TGTGTGCCTGAAATCCCTCG 60.322 55.000 0.00 0.00 0.00 4.63
3407 3544 1.377202 TGTGCCTGAAATCCCTCGC 60.377 57.895 0.00 0.00 0.00 5.03
3408 3545 2.115291 GTGCCTGAAATCCCTCGCC 61.115 63.158 0.00 0.00 0.00 5.54
3409 3546 2.897350 GCCTGAAATCCCTCGCCG 60.897 66.667 0.00 0.00 0.00 6.46
3410 3547 2.897350 CCTGAAATCCCTCGCCGC 60.897 66.667 0.00 0.00 0.00 6.53
3411 3548 2.125147 CTGAAATCCCTCGCCGCA 60.125 61.111 0.00 0.00 0.00 5.69
3412 3549 2.125147 TGAAATCCCTCGCCGCAG 60.125 61.111 0.00 0.00 0.00 5.18
3413 3550 3.577313 GAAATCCCTCGCCGCAGC 61.577 66.667 0.00 0.00 0.00 5.25
3426 3563 4.828925 GCAGCGTGCTCTCTCCCC 62.829 72.222 0.00 0.00 40.96 4.81
3427 3564 3.385384 CAGCGTGCTCTCTCCCCA 61.385 66.667 0.00 0.00 0.00 4.96
3428 3565 2.364842 AGCGTGCTCTCTCCCCAT 60.365 61.111 0.00 0.00 0.00 4.00
3429 3566 1.992277 AGCGTGCTCTCTCCCCATT 60.992 57.895 0.00 0.00 0.00 3.16
3430 3567 1.522580 GCGTGCTCTCTCCCCATTC 60.523 63.158 0.00 0.00 0.00 2.67
3431 3568 1.144936 CGTGCTCTCTCCCCATTCC 59.855 63.158 0.00 0.00 0.00 3.01
3432 3569 1.144936 GTGCTCTCTCCCCATTCCG 59.855 63.158 0.00 0.00 0.00 4.30
3433 3570 1.306141 TGCTCTCTCCCCATTCCGT 60.306 57.895 0.00 0.00 0.00 4.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 6.634805 ACACTCTGACATAGTTTATGGAGTG 58.365 40.000 20.32 20.32 46.62 3.51
3 4 6.867550 TGACACTCTGACATAGTTTATGGAG 58.132 40.000 1.61 0.00 40.47 3.86
5 6 8.498054 AAATGACACTCTGACATAGTTTATGG 57.502 34.615 1.61 0.00 40.47 2.74
6 7 9.154847 TGAAATGACACTCTGACATAGTTTATG 57.845 33.333 0.00 0.00 41.88 1.90
7 8 9.376075 CTGAAATGACACTCTGACATAGTTTAT 57.624 33.333 0.00 0.00 31.98 1.40
9 10 6.148480 GCTGAAATGACACTCTGACATAGTTT 59.852 38.462 0.00 0.00 31.98 2.66
11 12 5.174395 GCTGAAATGACACTCTGACATAGT 58.826 41.667 0.00 0.00 31.98 2.12
12 13 5.173664 TGCTGAAATGACACTCTGACATAG 58.826 41.667 0.00 0.00 31.98 2.23
13 14 5.151297 TGCTGAAATGACACTCTGACATA 57.849 39.130 0.00 0.00 31.98 2.29
14 15 4.011966 TGCTGAAATGACACTCTGACAT 57.988 40.909 0.00 0.00 34.44 3.06
15 16 3.473923 TGCTGAAATGACACTCTGACA 57.526 42.857 0.00 0.00 0.00 3.58
16 17 6.486253 TTTATGCTGAAATGACACTCTGAC 57.514 37.500 0.00 0.00 0.00 3.51
17 18 7.391275 TGATTTTATGCTGAAATGACACTCTGA 59.609 33.333 0.00 0.00 0.00 3.27
18 19 7.532571 TGATTTTATGCTGAAATGACACTCTG 58.467 34.615 0.00 0.00 0.00 3.35
19 20 7.692460 TGATTTTATGCTGAAATGACACTCT 57.308 32.000 0.00 0.00 0.00 3.24
20 21 7.375280 CGATGATTTTATGCTGAAATGACACTC 59.625 37.037 0.00 0.00 0.00 3.51
21 22 7.148188 ACGATGATTTTATGCTGAAATGACACT 60.148 33.333 0.00 0.00 0.00 3.55
22 23 6.968904 ACGATGATTTTATGCTGAAATGACAC 59.031 34.615 0.00 0.00 0.00 3.67
23 24 7.087409 ACGATGATTTTATGCTGAAATGACA 57.913 32.000 0.00 0.00 0.00 3.58
24 25 9.669353 ATTACGATGATTTTATGCTGAAATGAC 57.331 29.630 0.00 0.00 0.00 3.06
25 26 9.667989 CATTACGATGATTTTATGCTGAAATGA 57.332 29.630 0.00 0.00 35.16 2.57
26 27 8.908678 CCATTACGATGATTTTATGCTGAAATG 58.091 33.333 0.00 0.00 35.16 2.32
27 28 7.596248 GCCATTACGATGATTTTATGCTGAAAT 59.404 33.333 0.00 0.00 35.16 2.17
28 29 6.917477 GCCATTACGATGATTTTATGCTGAAA 59.083 34.615 0.00 0.00 35.16 2.69
29 30 6.039159 TGCCATTACGATGATTTTATGCTGAA 59.961 34.615 0.00 0.00 35.16 3.02
30 31 5.530543 TGCCATTACGATGATTTTATGCTGA 59.469 36.000 0.00 0.00 35.16 4.26
31 32 5.761003 TGCCATTACGATGATTTTATGCTG 58.239 37.500 0.00 0.00 35.16 4.41
32 33 5.532406 ACTGCCATTACGATGATTTTATGCT 59.468 36.000 0.00 0.00 35.16 3.79
33 34 5.762045 ACTGCCATTACGATGATTTTATGC 58.238 37.500 0.00 0.00 35.16 3.14
34 35 8.633075 AAAACTGCCATTACGATGATTTTATG 57.367 30.769 0.00 0.00 35.16 1.90
59 60 1.893544 TTACGATGACCCCGCAAAAA 58.106 45.000 0.00 0.00 0.00 1.94
60 61 1.740585 CATTACGATGACCCCGCAAAA 59.259 47.619 0.00 0.00 35.16 2.44
61 62 1.374560 CATTACGATGACCCCGCAAA 58.625 50.000 0.00 0.00 35.16 3.68
62 63 0.462937 CCATTACGATGACCCCGCAA 60.463 55.000 0.00 0.00 35.16 4.85
63 64 1.145156 CCATTACGATGACCCCGCA 59.855 57.895 0.00 0.00 35.16 5.69
64 65 2.251642 GCCATTACGATGACCCCGC 61.252 63.158 0.00 0.00 35.16 6.13
65 66 0.880278 CTGCCATTACGATGACCCCG 60.880 60.000 0.00 0.00 35.16 5.73
66 67 0.180406 ACTGCCATTACGATGACCCC 59.820 55.000 0.00 0.00 35.16 4.95
67 68 2.038387 AACTGCCATTACGATGACCC 57.962 50.000 0.00 0.00 35.16 4.46
68 69 7.817962 ACTATAATAACTGCCATTACGATGACC 59.182 37.037 0.00 0.00 35.16 4.02
69 70 8.648097 CACTATAATAACTGCCATTACGATGAC 58.352 37.037 0.00 0.00 35.16 3.06
70 71 8.581578 TCACTATAATAACTGCCATTACGATGA 58.418 33.333 0.00 0.00 35.16 2.92
71 72 8.757164 TCACTATAATAACTGCCATTACGATG 57.243 34.615 0.00 0.00 0.00 3.84
72 73 9.944376 AATCACTATAATAACTGCCATTACGAT 57.056 29.630 0.00 0.00 0.00 3.73
73 74 9.203421 CAATCACTATAATAACTGCCATTACGA 57.797 33.333 0.00 0.00 0.00 3.43
74 75 8.443160 CCAATCACTATAATAACTGCCATTACG 58.557 37.037 0.00 0.00 0.00 3.18
75 76 8.730680 CCCAATCACTATAATAACTGCCATTAC 58.269 37.037 0.00 0.00 0.00 1.89
76 77 7.393234 GCCCAATCACTATAATAACTGCCATTA 59.607 37.037 0.00 0.00 0.00 1.90
77 78 6.209391 GCCCAATCACTATAATAACTGCCATT 59.791 38.462 0.00 0.00 0.00 3.16
78 79 5.711976 GCCCAATCACTATAATAACTGCCAT 59.288 40.000 0.00 0.00 0.00 4.40
79 80 5.070001 GCCCAATCACTATAATAACTGCCA 58.930 41.667 0.00 0.00 0.00 4.92
80 81 5.070001 TGCCCAATCACTATAATAACTGCC 58.930 41.667 0.00 0.00 0.00 4.85
81 82 6.824305 ATGCCCAATCACTATAATAACTGC 57.176 37.500 0.00 0.00 0.00 4.40
82 83 9.671279 TGATATGCCCAATCACTATAATAACTG 57.329 33.333 0.00 0.00 0.00 3.16
86 87 9.836864 GTCATGATATGCCCAATCACTATAATA 57.163 33.333 0.00 0.00 36.24 0.98
87 88 8.554870 AGTCATGATATGCCCAATCACTATAAT 58.445 33.333 0.00 0.00 36.24 1.28
88 89 7.921304 AGTCATGATATGCCCAATCACTATAA 58.079 34.615 0.00 0.00 36.24 0.98
89 90 7.401204 AGAGTCATGATATGCCCAATCACTATA 59.599 37.037 0.00 0.00 36.24 1.31
90 91 6.215023 AGAGTCATGATATGCCCAATCACTAT 59.785 38.462 0.00 0.00 36.24 2.12
91 92 5.545335 AGAGTCATGATATGCCCAATCACTA 59.455 40.000 0.00 0.00 36.24 2.74
92 93 4.350225 AGAGTCATGATATGCCCAATCACT 59.650 41.667 0.00 0.00 36.24 3.41
93 94 4.454847 CAGAGTCATGATATGCCCAATCAC 59.545 45.833 0.00 0.00 36.24 3.06
94 95 4.648651 CAGAGTCATGATATGCCCAATCA 58.351 43.478 0.00 0.00 37.73 2.57
95 96 3.439476 GCAGAGTCATGATATGCCCAATC 59.561 47.826 15.19 0.00 0.00 2.67
96 97 3.074094 AGCAGAGTCATGATATGCCCAAT 59.926 43.478 19.90 5.28 37.61 3.16
97 98 2.440627 AGCAGAGTCATGATATGCCCAA 59.559 45.455 19.90 0.00 37.61 4.12
98 99 2.052468 AGCAGAGTCATGATATGCCCA 58.948 47.619 19.90 0.00 37.61 5.36
99 100 2.855209 AGCAGAGTCATGATATGCCC 57.145 50.000 19.90 0.00 37.61 5.36
100 101 4.797800 TCTAGCAGAGTCATGATATGCC 57.202 45.455 19.90 7.95 37.61 4.40
101 102 5.722263 ACATCTAGCAGAGTCATGATATGC 58.278 41.667 17.30 17.30 37.15 3.14
102 103 8.604640 AAAACATCTAGCAGAGTCATGATATG 57.395 34.615 0.00 0.00 0.00 1.78
104 105 9.534565 GTAAAAACATCTAGCAGAGTCATGATA 57.465 33.333 0.00 0.00 0.00 2.15
105 106 8.043113 TGTAAAAACATCTAGCAGAGTCATGAT 58.957 33.333 0.00 0.00 0.00 2.45
106 107 7.386059 TGTAAAAACATCTAGCAGAGTCATGA 58.614 34.615 0.00 0.00 0.00 3.07
107 108 7.601073 TGTAAAAACATCTAGCAGAGTCATG 57.399 36.000 0.00 0.00 0.00 3.07
108 109 8.621532 TTTGTAAAAACATCTAGCAGAGTCAT 57.378 30.769 0.00 0.00 0.00 3.06
109 110 7.931407 TCTTTGTAAAAACATCTAGCAGAGTCA 59.069 33.333 0.00 0.00 0.00 3.41
110 111 8.311650 TCTTTGTAAAAACATCTAGCAGAGTC 57.688 34.615 0.00 0.00 0.00 3.36
111 112 7.095017 GCTCTTTGTAAAAACATCTAGCAGAGT 60.095 37.037 0.00 0.00 0.00 3.24
112 113 7.118971 AGCTCTTTGTAAAAACATCTAGCAGAG 59.881 37.037 0.00 0.00 0.00 3.35
113 114 6.936900 AGCTCTTTGTAAAAACATCTAGCAGA 59.063 34.615 0.00 0.00 0.00 4.26
114 115 7.095060 TGAGCTCTTTGTAAAAACATCTAGCAG 60.095 37.037 16.19 0.00 0.00 4.24
115 116 6.710295 TGAGCTCTTTGTAAAAACATCTAGCA 59.290 34.615 16.19 0.00 0.00 3.49
116 117 7.133891 TGAGCTCTTTGTAAAAACATCTAGC 57.866 36.000 16.19 0.00 0.00 3.42
120 121 9.214953 CGATATTGAGCTCTTTGTAAAAACATC 57.785 33.333 16.19 1.57 0.00 3.06
121 122 8.946085 TCGATATTGAGCTCTTTGTAAAAACAT 58.054 29.630 16.19 0.00 0.00 2.71
122 123 8.317891 TCGATATTGAGCTCTTTGTAAAAACA 57.682 30.769 16.19 0.00 0.00 2.83
123 124 9.774742 ATTCGATATTGAGCTCTTTGTAAAAAC 57.225 29.630 16.19 0.00 0.00 2.43
124 125 9.988350 GATTCGATATTGAGCTCTTTGTAAAAA 57.012 29.630 16.19 0.00 0.00 1.94
125 126 8.612619 GGATTCGATATTGAGCTCTTTGTAAAA 58.387 33.333 16.19 0.00 0.00 1.52
126 127 7.226720 GGGATTCGATATTGAGCTCTTTGTAAA 59.773 37.037 16.19 0.00 0.00 2.01
127 128 6.706270 GGGATTCGATATTGAGCTCTTTGTAA 59.294 38.462 16.19 0.00 0.00 2.41
128 129 6.223852 GGGATTCGATATTGAGCTCTTTGTA 58.776 40.000 16.19 3.06 0.00 2.41
129 130 5.059833 GGGATTCGATATTGAGCTCTTTGT 58.940 41.667 16.19 0.07 0.00 2.83
130 131 4.453819 GGGGATTCGATATTGAGCTCTTTG 59.546 45.833 16.19 1.72 0.00 2.77
143 144 2.370189 GGATGAACTCAGGGGATTCGAT 59.630 50.000 0.00 0.00 0.00 3.59
151 152 1.952367 GCCAAGTGGATGAACTCAGGG 60.952 57.143 0.18 0.00 37.39 4.45
153 154 1.081892 CGCCAAGTGGATGAACTCAG 58.918 55.000 0.18 0.00 37.39 3.35
158 159 1.228398 TTGGCGCCAAGTGGATGAA 60.228 52.632 37.30 13.21 37.39 2.57
219 220 7.320443 TCGCAGCTATATTTCTGATTTTGTT 57.680 32.000 7.77 0.00 32.26 2.83
268 271 0.535335 TAATTCCCTCTTCGCGCAGT 59.465 50.000 8.75 0.00 0.00 4.40
338 341 1.080093 CATGGCACCTGCAGCTTTG 60.080 57.895 8.66 6.01 44.36 2.77
339 342 2.280552 CCATGGCACCTGCAGCTTT 61.281 57.895 8.66 0.00 44.36 3.51
366 369 5.712152 ATTCTTCACAAAACTAGCCAAGG 57.288 39.130 0.00 0.00 0.00 3.61
367 370 8.424274 AAAAATTCTTCACAAAACTAGCCAAG 57.576 30.769 0.00 0.00 0.00 3.61
391 394 4.927267 TCCAATCTCAGCCCTCTAAAAA 57.073 40.909 0.00 0.00 0.00 1.94
392 395 5.456921 AATCCAATCTCAGCCCTCTAAAA 57.543 39.130 0.00 0.00 0.00 1.52
393 396 5.456921 AAATCCAATCTCAGCCCTCTAAA 57.543 39.130 0.00 0.00 0.00 1.85
394 397 5.456921 AAAATCCAATCTCAGCCCTCTAA 57.543 39.130 0.00 0.00 0.00 2.10
395 398 5.456921 AAAAATCCAATCTCAGCCCTCTA 57.543 39.130 0.00 0.00 0.00 2.43
396 399 4.328118 AAAAATCCAATCTCAGCCCTCT 57.672 40.909 0.00 0.00 0.00 3.69
420 423 7.344612 ACTCAATTTCCAAGGGATAAAATACCC 59.655 37.037 0.00 0.00 45.88 3.69
421 424 8.197439 CACTCAATTTCCAAGGGATAAAATACC 58.803 37.037 0.00 0.00 0.00 2.73
422 425 8.749354 ACACTCAATTTCCAAGGGATAAAATAC 58.251 33.333 0.00 0.00 0.00 1.89
423 426 8.893563 ACACTCAATTTCCAAGGGATAAAATA 57.106 30.769 0.00 0.00 0.00 1.40
424 427 7.797121 ACACTCAATTTCCAAGGGATAAAAT 57.203 32.000 0.00 0.00 0.00 1.82
425 428 7.610580 AACACTCAATTTCCAAGGGATAAAA 57.389 32.000 0.00 0.00 0.00 1.52
426 429 7.610580 AAACACTCAATTTCCAAGGGATAAA 57.389 32.000 0.00 0.00 0.00 1.40
427 430 7.441017 CAAAACACTCAATTTCCAAGGGATAA 58.559 34.615 0.00 0.00 0.00 1.75
428 431 6.991938 CAAAACACTCAATTTCCAAGGGATA 58.008 36.000 0.00 0.00 0.00 2.59
429 432 5.857268 CAAAACACTCAATTTCCAAGGGAT 58.143 37.500 0.00 0.00 0.00 3.85
430 433 5.275067 CAAAACACTCAATTTCCAAGGGA 57.725 39.130 0.00 0.00 0.00 4.20
880 883 9.561069 CTGCTAAGGGTTTGAAGTATGTATTAT 57.439 33.333 0.00 0.00 0.00 1.28
1011 1021 1.153958 CATCGTCGTCTCAGCTGCA 60.154 57.895 9.47 0.00 0.00 4.41
1109 1119 3.134127 GATTGCTGTCCACGGGGC 61.134 66.667 0.00 0.00 0.00 5.80
1137 1153 1.742768 GGTGTAGATGGAGAGCGGG 59.257 63.158 0.00 0.00 0.00 6.13
1438 1454 3.869272 GTTGATCAGCTGGCGCGG 61.869 66.667 15.13 0.00 42.32 6.46
1749 1840 3.319441 GAACGGGGCGGGCTTCTTA 62.319 63.158 0.26 0.00 0.00 2.10
1774 1865 2.125753 GAGGAGTGGAGCACGCTG 60.126 66.667 0.00 0.00 40.78 5.18
1785 1876 2.212794 ATCGGTCAGGACGGAGGAGT 62.213 60.000 13.84 0.00 42.56 3.85
1800 1891 1.795286 GAAGCGGCATTAGAGAATCGG 59.205 52.381 1.45 0.00 42.67 4.18
1810 1901 1.678970 GGGAAGGTGAAGCGGCATT 60.679 57.895 1.45 0.00 0.00 3.56
1903 2033 4.122143 AGTTGTTCATGTTGTTGTTGGG 57.878 40.909 0.00 0.00 0.00 4.12
1928 2058 2.348411 AAACTGTGTGGAGTTGGAGG 57.652 50.000 0.00 0.00 36.28 4.30
1934 2064 3.016736 CACAAGGAAAACTGTGTGGAGT 58.983 45.455 0.00 0.00 35.96 3.85
1947 2077 1.004745 GGGAGGAAGATGCACAAGGAA 59.995 52.381 0.00 0.00 0.00 3.36
2346 2480 2.107950 TGAAGTAGGCAAACGGATGG 57.892 50.000 0.00 0.00 0.00 3.51
2424 2559 4.261801 TCTGCCTACAATGCTAACTTTCC 58.738 43.478 0.00 0.00 0.00 3.13
2444 2579 6.734137 TCAAACGCACTGTATTTGAAATTCT 58.266 32.000 0.00 0.00 38.92 2.40
2615 2752 3.420893 AGGCTGCAAAGCTTATTGTACA 58.579 40.909 0.00 0.00 32.80 2.90
2633 2770 1.632589 ATGGACAAGGGTTCAAAGGC 58.367 50.000 0.00 0.00 35.74 4.35
2656 2793 1.381928 CCTTAGGCTAGCCGACGTCA 61.382 60.000 27.83 6.96 41.95 4.35
2657 2794 1.359475 CCTTAGGCTAGCCGACGTC 59.641 63.158 27.83 5.18 41.95 4.34
2658 2795 2.783288 GCCTTAGGCTAGCCGACGT 61.783 63.158 27.83 13.29 46.69 4.34
2784 2921 1.270274 GTGATCACTGCAACATGCCAA 59.730 47.619 18.83 0.00 44.23 4.52
2800 2937 6.732896 AGGAGTACAAAAGATATCCGTGAT 57.267 37.500 0.00 0.00 31.97 3.06
2804 2941 4.982916 CGGAAGGAGTACAAAAGATATCCG 59.017 45.833 0.00 0.00 39.90 4.18
2816 2953 7.767659 ACAAATATTTAGGAACGGAAGGAGTAC 59.232 37.037 0.00 0.00 0.00 2.73
2817 2954 7.854337 ACAAATATTTAGGAACGGAAGGAGTA 58.146 34.615 0.00 0.00 0.00 2.59
2818 2955 6.718294 ACAAATATTTAGGAACGGAAGGAGT 58.282 36.000 0.00 0.00 0.00 3.85
2819 2956 7.048512 AGACAAATATTTAGGAACGGAAGGAG 58.951 38.462 0.00 0.00 0.00 3.69
2820 2957 6.954232 AGACAAATATTTAGGAACGGAAGGA 58.046 36.000 0.00 0.00 0.00 3.36
2821 2958 7.625828 AAGACAAATATTTAGGAACGGAAGG 57.374 36.000 0.00 0.00 0.00 3.46
2822 2959 9.908152 AAAAAGACAAATATTTAGGAACGGAAG 57.092 29.630 0.00 0.00 0.00 3.46
2837 2974 9.688592 CTTGCTGAAATCTCTAAAAAGACAAAT 57.311 29.630 0.00 0.00 0.00 2.32
2838 2975 7.649306 GCTTGCTGAAATCTCTAAAAAGACAAA 59.351 33.333 0.00 0.00 0.00 2.83
2839 2976 7.141363 GCTTGCTGAAATCTCTAAAAAGACAA 58.859 34.615 0.00 0.00 0.00 3.18
2840 2977 6.566564 CGCTTGCTGAAATCTCTAAAAAGACA 60.567 38.462 0.00 0.00 0.00 3.41
2841 2978 5.792468 CGCTTGCTGAAATCTCTAAAAAGAC 59.208 40.000 0.00 0.00 0.00 3.01
2842 2979 5.700832 TCGCTTGCTGAAATCTCTAAAAAGA 59.299 36.000 0.00 0.00 0.00 2.52
2843 2980 5.792468 GTCGCTTGCTGAAATCTCTAAAAAG 59.208 40.000 0.00 0.00 0.00 2.27
2844 2981 5.470098 AGTCGCTTGCTGAAATCTCTAAAAA 59.530 36.000 0.00 0.00 0.00 1.94
2845 2982 4.997395 AGTCGCTTGCTGAAATCTCTAAAA 59.003 37.500 0.00 0.00 0.00 1.52
2846 2983 4.569943 AGTCGCTTGCTGAAATCTCTAAA 58.430 39.130 0.00 0.00 0.00 1.85
2847 2984 4.193826 AGTCGCTTGCTGAAATCTCTAA 57.806 40.909 0.00 0.00 0.00 2.10
2848 2985 3.876274 AGTCGCTTGCTGAAATCTCTA 57.124 42.857 0.00 0.00 0.00 2.43
2849 2986 2.758736 AGTCGCTTGCTGAAATCTCT 57.241 45.000 0.00 0.00 0.00 3.10
2850 2987 6.032985 CGTATATAGTCGCTTGCTGAAATCTC 59.967 42.308 0.00 0.00 0.00 2.75
2851 2988 5.859114 CGTATATAGTCGCTTGCTGAAATCT 59.141 40.000 0.00 0.00 0.00 2.40
2852 2989 5.856986 TCGTATATAGTCGCTTGCTGAAATC 59.143 40.000 0.00 0.00 0.00 2.17
2853 2990 5.769367 TCGTATATAGTCGCTTGCTGAAAT 58.231 37.500 0.00 0.00 0.00 2.17
2854 2991 5.177725 TCGTATATAGTCGCTTGCTGAAA 57.822 39.130 0.00 0.00 0.00 2.69
2855 2992 4.823790 TCGTATATAGTCGCTTGCTGAA 57.176 40.909 0.00 0.00 0.00 3.02
2856 2993 4.784329 CTTCGTATATAGTCGCTTGCTGA 58.216 43.478 0.00 0.00 0.00 4.26
2857 2994 3.362237 GCTTCGTATATAGTCGCTTGCTG 59.638 47.826 0.00 0.00 0.00 4.41
2858 2995 3.004419 TGCTTCGTATATAGTCGCTTGCT 59.996 43.478 0.00 0.00 0.00 3.91
2859 2996 3.305964 TGCTTCGTATATAGTCGCTTGC 58.694 45.455 0.00 0.00 0.00 4.01
2860 2997 5.883328 TTTGCTTCGTATATAGTCGCTTG 57.117 39.130 0.00 0.00 0.00 4.01
2861 2998 8.583810 TTATTTTGCTTCGTATATAGTCGCTT 57.416 30.769 0.00 0.00 0.00 4.68
2862 2999 7.866393 ACTTATTTTGCTTCGTATATAGTCGCT 59.134 33.333 0.00 0.00 0.00 4.93
2863 3000 7.945178 CACTTATTTTGCTTCGTATATAGTCGC 59.055 37.037 0.00 0.00 0.00 5.19
2864 3001 9.177304 TCACTTATTTTGCTTCGTATATAGTCG 57.823 33.333 0.00 0.00 0.00 4.18
2871 3008 9.378551 TGTAGATTCACTTATTTTGCTTCGTAT 57.621 29.630 0.00 0.00 0.00 3.06
2872 3009 8.653338 GTGTAGATTCACTTATTTTGCTTCGTA 58.347 33.333 0.00 0.00 35.68 3.43
2873 3010 7.387948 AGTGTAGATTCACTTATTTTGCTTCGT 59.612 33.333 0.00 0.00 44.92 3.85
2874 3011 7.743104 AGTGTAGATTCACTTATTTTGCTTCG 58.257 34.615 0.00 0.00 44.92 3.79
2875 3012 8.940952 AGAGTGTAGATTCACTTATTTTGCTTC 58.059 33.333 0.98 0.00 46.81 3.86
2876 3013 8.854614 AGAGTGTAGATTCACTTATTTTGCTT 57.145 30.769 0.98 0.00 46.81 3.91
2877 3014 9.944376 TTAGAGTGTAGATTCACTTATTTTGCT 57.056 29.630 0.98 0.00 46.81 3.91
2885 3022 9.209175 GACATGTTTTAGAGTGTAGATTCACTT 57.791 33.333 0.00 0.00 46.81 3.16
2887 3024 8.764524 AGACATGTTTTAGAGTGTAGATTCAC 57.235 34.615 0.00 0.00 38.46 3.18
2903 3040 9.639601 CACATACGGATGTATATAGACATGTTT 57.360 33.333 17.40 3.45 44.82 2.83
2904 3041 8.251026 CCACATACGGATGTATATAGACATGTT 58.749 37.037 17.40 4.40 44.82 2.71
2905 3042 7.396339 ACCACATACGGATGTATATAGACATGT 59.604 37.037 17.40 12.10 44.82 3.21
2906 3043 7.772166 ACCACATACGGATGTATATAGACATG 58.228 38.462 17.40 6.96 44.82 3.21
2907 3044 7.956328 ACCACATACGGATGTATATAGACAT 57.044 36.000 14.23 12.70 44.82 3.06
2908 3045 8.105197 ACTACCACATACGGATGTATATAGACA 58.895 37.037 22.62 2.07 44.82 3.41
2909 3046 8.503458 ACTACCACATACGGATGTATATAGAC 57.497 38.462 22.62 0.00 44.82 2.59
2910 3047 7.772292 GGACTACCACATACGGATGTATATAGA 59.228 40.741 22.62 5.04 44.82 1.98
2911 3048 7.555195 TGGACTACCACATACGGATGTATATAG 59.445 40.741 14.23 16.35 44.82 1.31
2912 3049 7.404481 TGGACTACCACATACGGATGTATATA 58.596 38.462 14.23 5.36 44.82 0.86
2913 3050 6.250711 TGGACTACCACATACGGATGTATAT 58.749 40.000 14.23 4.37 44.82 0.86
2914 3051 5.633117 TGGACTACCACATACGGATGTATA 58.367 41.667 14.23 8.27 44.82 1.47
2915 3052 4.476297 TGGACTACCACATACGGATGTAT 58.524 43.478 14.23 7.46 44.82 2.29
2916 3053 3.900971 TGGACTACCACATACGGATGTA 58.099 45.455 14.23 0.00 44.82 2.29
2932 3069 9.354673 TGTCTTTTTAGAGATTTCAAATGGACT 57.645 29.630 0.00 0.00 0.00 3.85
2933 3070 9.965824 TTGTCTTTTTAGAGATTTCAAATGGAC 57.034 29.630 0.00 0.00 0.00 4.02
2950 3087 8.520351 CCTCCGTTCCTAAATATTTGTCTTTTT 58.480 33.333 11.05 0.00 0.00 1.94
2951 3088 7.122204 CCCTCCGTTCCTAAATATTTGTCTTTT 59.878 37.037 11.05 0.00 0.00 2.27
2952 3089 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
2953 3090 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
2954 3091 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
2955 3092 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
2956 3093 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
2957 3094 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
2958 3095 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
2959 3096 7.628501 ATTACTCCCTCCGTTCCTAAATATT 57.371 36.000 0.00 0.00 0.00 1.28
2960 3097 7.072076 ACAATTACTCCCTCCGTTCCTAAATAT 59.928 37.037 0.00 0.00 0.00 1.28
2961 3098 6.384886 ACAATTACTCCCTCCGTTCCTAAATA 59.615 38.462 0.00 0.00 0.00 1.40
2962 3099 5.191124 ACAATTACTCCCTCCGTTCCTAAAT 59.809 40.000 0.00 0.00 0.00 1.40
2963 3100 4.533311 ACAATTACTCCCTCCGTTCCTAAA 59.467 41.667 0.00 0.00 0.00 1.85
2964 3101 4.098894 ACAATTACTCCCTCCGTTCCTAA 58.901 43.478 0.00 0.00 0.00 2.69
2965 3102 3.703052 GACAATTACTCCCTCCGTTCCTA 59.297 47.826 0.00 0.00 0.00 2.94
2966 3103 2.500504 GACAATTACTCCCTCCGTTCCT 59.499 50.000 0.00 0.00 0.00 3.36
2967 3104 2.235402 TGACAATTACTCCCTCCGTTCC 59.765 50.000 0.00 0.00 0.00 3.62
2968 3105 3.604875 TGACAATTACTCCCTCCGTTC 57.395 47.619 0.00 0.00 0.00 3.95
2969 3106 3.263425 ACATGACAATTACTCCCTCCGTT 59.737 43.478 0.00 0.00 0.00 4.44
2970 3107 2.838202 ACATGACAATTACTCCCTCCGT 59.162 45.455 0.00 0.00 0.00 4.69
2971 3108 3.543680 ACATGACAATTACTCCCTCCG 57.456 47.619 0.00 0.00 0.00 4.63
2972 3109 4.843728 TGAACATGACAATTACTCCCTCC 58.156 43.478 0.00 0.00 0.00 4.30
2973 3110 5.220931 GCATGAACATGACAATTACTCCCTC 60.221 44.000 17.40 0.00 41.20 4.30
2974 3111 4.641989 GCATGAACATGACAATTACTCCCT 59.358 41.667 17.40 0.00 41.20 4.20
2975 3112 4.641989 AGCATGAACATGACAATTACTCCC 59.358 41.667 17.40 0.00 41.20 4.30
2976 3113 5.575957 CAGCATGAACATGACAATTACTCC 58.424 41.667 17.40 0.00 41.20 3.85
2977 3114 5.032863 GCAGCATGAACATGACAATTACTC 58.967 41.667 17.40 0.00 41.20 2.59
2978 3115 4.460034 TGCAGCATGAACATGACAATTACT 59.540 37.500 17.40 1.88 41.20 2.24
3013 3150 0.248825 TCCAACGCATGCAACAACAC 60.249 50.000 19.57 0.00 0.00 3.32
3016 3153 2.556189 ACTAATCCAACGCATGCAACAA 59.444 40.909 19.57 0.00 0.00 2.83
3051 3188 1.217882 GGTAAGGGAATCATCGCACG 58.782 55.000 0.00 0.00 40.79 5.34
3058 3195 4.080807 TGCAAATAGTCGGTAAGGGAATCA 60.081 41.667 0.00 0.00 0.00 2.57
3162 3299 3.488553 CCGGCCGCTTTTTAGATTTTAGG 60.489 47.826 22.85 0.00 0.00 2.69
3163 3300 3.691498 CCGGCCGCTTTTTAGATTTTAG 58.309 45.455 22.85 0.00 0.00 1.85
3164 3301 2.159352 GCCGGCCGCTTTTTAGATTTTA 60.159 45.455 22.85 0.00 0.00 1.52
3165 3302 1.403647 GCCGGCCGCTTTTTAGATTTT 60.404 47.619 22.85 0.00 0.00 1.82
3166 3303 0.172578 GCCGGCCGCTTTTTAGATTT 59.827 50.000 22.85 0.00 0.00 2.17
3167 3304 1.663379 GGCCGGCCGCTTTTTAGATT 61.663 55.000 33.60 0.00 37.74 2.40
3168 3305 2.119029 GGCCGGCCGCTTTTTAGAT 61.119 57.895 33.60 0.00 37.74 1.98
3169 3306 2.748647 GGCCGGCCGCTTTTTAGA 60.749 61.111 33.60 0.00 37.74 2.10
3170 3307 3.059386 TGGCCGGCCGCTTTTTAG 61.059 61.111 39.00 5.07 39.42 1.85
3171 3308 3.366915 GTGGCCGGCCGCTTTTTA 61.367 61.111 44.49 23.23 42.89 1.52
3178 3315 4.708386 TTAGTTGGTGGCCGGCCG 62.708 66.667 39.00 21.04 39.42 6.13
3179 3316 3.060000 GTTAGTTGGTGGCCGGCC 61.060 66.667 39.40 39.40 0.00 6.13
3180 3317 2.281900 TGTTAGTTGGTGGCCGGC 60.282 61.111 21.18 21.18 0.00 6.13
3181 3318 0.953960 GTCTGTTAGTTGGTGGCCGG 60.954 60.000 0.00 0.00 0.00 6.13
3182 3319 0.250124 TGTCTGTTAGTTGGTGGCCG 60.250 55.000 0.00 0.00 0.00 6.13
3183 3320 1.235724 GTGTCTGTTAGTTGGTGGCC 58.764 55.000 0.00 0.00 0.00 5.36
3184 3321 0.865769 CGTGTCTGTTAGTTGGTGGC 59.134 55.000 0.00 0.00 0.00 5.01
3185 3322 1.508632 CCGTGTCTGTTAGTTGGTGG 58.491 55.000 0.00 0.00 0.00 4.61
3186 3323 1.508632 CCCGTGTCTGTTAGTTGGTG 58.491 55.000 0.00 0.00 0.00 4.17
3187 3324 0.250166 GCCCGTGTCTGTTAGTTGGT 60.250 55.000 0.00 0.00 0.00 3.67
3188 3325 1.289109 CGCCCGTGTCTGTTAGTTGG 61.289 60.000 0.00 0.00 0.00 3.77
3189 3326 1.289109 CCGCCCGTGTCTGTTAGTTG 61.289 60.000 0.00 0.00 0.00 3.16
3190 3327 1.005394 CCGCCCGTGTCTGTTAGTT 60.005 57.895 0.00 0.00 0.00 2.24
3191 3328 2.654877 CCGCCCGTGTCTGTTAGT 59.345 61.111 0.00 0.00 0.00 2.24
3192 3329 2.813908 GCCGCCCGTGTCTGTTAG 60.814 66.667 0.00 0.00 0.00 2.34
3193 3330 3.307906 AGCCGCCCGTGTCTGTTA 61.308 61.111 0.00 0.00 0.00 2.41
3194 3331 4.988598 CAGCCGCCCGTGTCTGTT 62.989 66.667 0.00 0.00 0.00 3.16
3196 3333 3.958147 AATCAGCCGCCCGTGTCTG 62.958 63.158 0.00 0.00 0.00 3.51
3197 3334 3.665675 GAATCAGCCGCCCGTGTCT 62.666 63.158 0.00 0.00 0.00 3.41
3198 3335 3.195698 GAATCAGCCGCCCGTGTC 61.196 66.667 0.00 0.00 0.00 3.67
3199 3336 4.778143 GGAATCAGCCGCCCGTGT 62.778 66.667 0.00 0.00 0.00 4.49
3200 3337 4.473520 AGGAATCAGCCGCCCGTG 62.474 66.667 0.00 0.00 0.00 4.94
3201 3338 4.473520 CAGGAATCAGCCGCCCGT 62.474 66.667 0.00 0.00 0.00 5.28
3203 3340 4.115199 ACCAGGAATCAGCCGCCC 62.115 66.667 0.00 0.00 0.00 6.13
3204 3341 2.514824 GACCAGGAATCAGCCGCC 60.515 66.667 0.00 0.00 0.00 6.13
3205 3342 2.892425 CGACCAGGAATCAGCCGC 60.892 66.667 0.00 0.00 0.00 6.53
3206 3343 1.079127 AACGACCAGGAATCAGCCG 60.079 57.895 0.00 0.00 0.00 5.52
3207 3344 1.084370 CGAACGACCAGGAATCAGCC 61.084 60.000 0.00 0.00 0.00 4.85
3208 3345 0.108804 TCGAACGACCAGGAATCAGC 60.109 55.000 0.00 0.00 0.00 4.26
3209 3346 2.464865 GATCGAACGACCAGGAATCAG 58.535 52.381 0.00 0.00 0.00 2.90
3210 3347 1.202256 CGATCGAACGACCAGGAATCA 60.202 52.381 10.26 0.00 35.09 2.57
3211 3348 1.478137 CGATCGAACGACCAGGAATC 58.522 55.000 10.26 0.00 35.09 2.52
3212 3349 0.527817 GCGATCGAACGACCAGGAAT 60.528 55.000 21.57 0.00 35.09 3.01
3213 3350 1.153901 GCGATCGAACGACCAGGAA 60.154 57.895 21.57 0.00 35.09 3.36
3214 3351 2.488355 GCGATCGAACGACCAGGA 59.512 61.111 21.57 0.00 35.09 3.86
3215 3352 2.949678 CGCGATCGAACGACCAGG 60.950 66.667 21.57 0.00 38.10 4.45
3216 3353 3.607987 GCGCGATCGAACGACCAG 61.608 66.667 21.57 7.49 38.10 4.00
3219 3356 3.607987 CTGGCGCGATCGAACGAC 61.608 66.667 21.57 16.82 38.10 4.34
3244 3381 4.864334 CACCTGGCGGATCTGGGC 62.864 72.222 3.14 3.85 0.00 5.36
3245 3382 4.864334 GCACCTGGCGGATCTGGG 62.864 72.222 3.14 0.00 0.00 4.45
3246 3383 4.864334 GGCACCTGGCGGATCTGG 62.864 72.222 3.14 0.00 46.16 3.86
3247 3384 4.100084 TGGCACCTGGCGGATCTG 62.100 66.667 0.00 0.00 46.16 2.90
3248 3385 4.101448 GTGGCACCTGGCGGATCT 62.101 66.667 6.29 0.00 46.16 2.75
3258 3395 2.142292 AATCCAGACCAGGTGGCACC 62.142 60.000 29.32 29.32 39.32 5.01
3259 3396 0.962356 CAATCCAGACCAGGTGGCAC 60.962 60.000 9.70 9.70 39.32 5.01
3260 3397 1.379916 CAATCCAGACCAGGTGGCA 59.620 57.895 0.00 0.00 39.32 4.92
3261 3398 1.379044 CCAATCCAGACCAGGTGGC 60.379 63.158 0.00 0.00 39.32 5.01
3262 3399 1.379044 GCCAATCCAGACCAGGTGG 60.379 63.158 0.00 0.00 42.17 4.61
3263 3400 1.379044 GGCCAATCCAGACCAGGTG 60.379 63.158 0.00 0.00 34.01 4.00
3264 3401 2.616458 GGGCCAATCCAGACCAGGT 61.616 63.158 4.39 0.00 36.21 4.00
3265 3402 2.276740 GGGCCAATCCAGACCAGG 59.723 66.667 4.39 0.00 36.21 4.45
3266 3403 2.276740 GGGGCCAATCCAGACCAG 59.723 66.667 4.39 0.00 36.21 4.00
3267 3404 3.727258 CGGGGCCAATCCAGACCA 61.727 66.667 4.39 0.00 36.21 4.02
3269 3406 4.424711 TGCGGGGCCAATCCAGAC 62.425 66.667 4.39 0.00 36.21 3.51
3270 3407 4.424711 GTGCGGGGCCAATCCAGA 62.425 66.667 4.39 0.00 36.21 3.86
3292 3429 2.510064 TATGGACAACCGCCCACGAC 62.510 60.000 0.00 0.00 43.93 4.34
3293 3430 1.618876 ATATGGACAACCGCCCACGA 61.619 55.000 0.00 0.00 43.93 4.35
3294 3431 1.153249 ATATGGACAACCGCCCACG 60.153 57.895 0.00 0.00 39.42 4.94
3295 3432 0.818040 GGATATGGACAACCGCCCAC 60.818 60.000 0.00 0.00 39.42 4.61
3296 3433 1.529796 GGATATGGACAACCGCCCA 59.470 57.895 0.00 0.00 39.42 5.36
3297 3434 1.597027 CGGATATGGACAACCGCCC 60.597 63.158 0.00 0.00 38.98 6.13
3298 3435 1.597027 CCGGATATGGACAACCGCC 60.597 63.158 0.00 0.00 43.37 6.13
3299 3436 1.444250 TCCGGATATGGACAACCGC 59.556 57.895 0.00 0.00 43.37 5.68
3306 3443 2.504274 GCCCACGTCCGGATATGGA 61.504 63.158 29.54 0.00 33.80 3.41
3307 3444 2.030562 GCCCACGTCCGGATATGG 59.969 66.667 23.81 23.81 0.00 2.74
3308 3445 1.300931 CTGCCCACGTCCGGATATG 60.301 63.158 7.81 9.36 0.00 1.78
3309 3446 2.507854 CCTGCCCACGTCCGGATAT 61.508 63.158 7.81 0.00 0.00 1.63
3310 3447 3.151710 CCTGCCCACGTCCGGATA 61.152 66.667 7.81 0.00 0.00 2.59
3326 3463 2.588856 CTACCGCTTACAGGTGGGCC 62.589 65.000 0.00 0.00 42.83 5.80
3327 3464 1.153429 CTACCGCTTACAGGTGGGC 60.153 63.158 0.00 0.00 42.83 5.36
3328 3465 0.460311 CTCTACCGCTTACAGGTGGG 59.540 60.000 0.00 0.00 42.83 4.61
3329 3466 0.460311 CCTCTACCGCTTACAGGTGG 59.540 60.000 0.00 0.00 42.83 4.61
3330 3467 1.405821 CTCCTCTACCGCTTACAGGTG 59.594 57.143 0.00 0.00 42.83 4.00
3331 3468 1.685491 CCTCCTCTACCGCTTACAGGT 60.685 57.143 0.00 0.00 45.28 4.00
3332 3469 1.033574 CCTCCTCTACCGCTTACAGG 58.966 60.000 0.00 0.00 0.00 4.00
3333 3470 1.033574 CCCTCCTCTACCGCTTACAG 58.966 60.000 0.00 0.00 0.00 2.74
3334 3471 0.396695 CCCCTCCTCTACCGCTTACA 60.397 60.000 0.00 0.00 0.00 2.41
3335 3472 0.106318 TCCCCTCCTCTACCGCTTAC 60.106 60.000 0.00 0.00 0.00 2.34
3336 3473 0.185416 CTCCCCTCCTCTACCGCTTA 59.815 60.000 0.00 0.00 0.00 3.09
3337 3474 1.075896 CTCCCCTCCTCTACCGCTT 60.076 63.158 0.00 0.00 0.00 4.68
3338 3475 0.992431 TACTCCCCTCCTCTACCGCT 60.992 60.000 0.00 0.00 0.00 5.52
3339 3476 0.537828 CTACTCCCCTCCTCTACCGC 60.538 65.000 0.00 0.00 0.00 5.68
3340 3477 0.845337 ACTACTCCCCTCCTCTACCG 59.155 60.000 0.00 0.00 0.00 4.02
3341 3478 1.133419 CCACTACTCCCCTCCTCTACC 60.133 61.905 0.00 0.00 0.00 3.18
3342 3479 1.133419 CCCACTACTCCCCTCCTCTAC 60.133 61.905 0.00 0.00 0.00 2.59
3343 3480 1.232909 CCCACTACTCCCCTCCTCTA 58.767 60.000 0.00 0.00 0.00 2.43
3344 3481 1.595058 CCCCACTACTCCCCTCCTCT 61.595 65.000 0.00 0.00 0.00 3.69
3345 3482 1.075151 CCCCACTACTCCCCTCCTC 60.075 68.421 0.00 0.00 0.00 3.71
3346 3483 2.647949 CCCCCACTACTCCCCTCCT 61.648 68.421 0.00 0.00 0.00 3.69
3347 3484 2.040779 CCCCCACTACTCCCCTCC 60.041 72.222 0.00 0.00 0.00 4.30
3348 3485 1.382833 GACCCCCACTACTCCCCTC 60.383 68.421 0.00 0.00 0.00 4.30
3349 3486 2.785703 GACCCCCACTACTCCCCT 59.214 66.667 0.00 0.00 0.00 4.79
3350 3487 2.762875 CGACCCCCACTACTCCCC 60.763 72.222 0.00 0.00 0.00 4.81
3351 3488 2.038490 ACGACCCCCACTACTCCC 59.962 66.667 0.00 0.00 0.00 4.30
3352 3489 2.356780 CCACGACCCCCACTACTCC 61.357 68.421 0.00 0.00 0.00 3.85
3353 3490 2.356780 CCCACGACCCCCACTACTC 61.357 68.421 0.00 0.00 0.00 2.59
3354 3491 2.284405 CCCACGACCCCCACTACT 60.284 66.667 0.00 0.00 0.00 2.57
3355 3492 4.091939 GCCCACGACCCCCACTAC 62.092 72.222 0.00 0.00 0.00 2.73
3368 3505 4.931633 TTCGAAAACCGCCGCCCA 62.932 61.111 0.00 0.00 38.37 5.36
3369 3506 2.985117 ATTTCGAAAACCGCCGCCC 61.985 57.895 15.66 0.00 38.37 6.13
3370 3507 1.799916 CATTTCGAAAACCGCCGCC 60.800 57.895 15.66 0.00 38.37 6.13
3371 3508 1.081708 ACATTTCGAAAACCGCCGC 60.082 52.632 15.66 0.00 38.37 6.53
3372 3509 0.040781 ACACATTTCGAAAACCGCCG 60.041 50.000 15.66 3.43 38.37 6.46
3373 3510 1.404477 CACACATTTCGAAAACCGCC 58.596 50.000 15.66 0.00 38.37 6.13
3374 3511 0.775861 GCACACATTTCGAAAACCGC 59.224 50.000 15.66 9.65 38.37 5.68
3375 3512 1.001815 AGGCACACATTTCGAAAACCG 60.002 47.619 15.66 9.05 40.25 4.44
3376 3513 2.034053 TCAGGCACACATTTCGAAAACC 59.966 45.455 15.66 9.53 0.00 3.27
3377 3514 3.347958 TCAGGCACACATTTCGAAAAC 57.652 42.857 15.66 0.73 0.00 2.43
3378 3515 4.377839 TTTCAGGCACACATTTCGAAAA 57.622 36.364 15.66 0.00 0.00 2.29
3379 3516 4.545610 GATTTCAGGCACACATTTCGAAA 58.454 39.130 13.91 13.91 0.00 3.46
3380 3517 3.057596 GGATTTCAGGCACACATTTCGAA 60.058 43.478 0.00 0.00 0.00 3.71
3381 3518 2.487762 GGATTTCAGGCACACATTTCGA 59.512 45.455 0.00 0.00 0.00 3.71
3382 3519 2.415893 GGGATTTCAGGCACACATTTCG 60.416 50.000 0.00 0.00 0.00 3.46
3383 3520 2.827921 AGGGATTTCAGGCACACATTTC 59.172 45.455 0.00 0.00 0.00 2.17
3384 3521 2.827921 GAGGGATTTCAGGCACACATTT 59.172 45.455 0.00 0.00 0.00 2.32
3385 3522 2.450476 GAGGGATTTCAGGCACACATT 58.550 47.619 0.00 0.00 0.00 2.71
3386 3523 1.679944 CGAGGGATTTCAGGCACACAT 60.680 52.381 0.00 0.00 0.00 3.21
3387 3524 0.321564 CGAGGGATTTCAGGCACACA 60.322 55.000 0.00 0.00 0.00 3.72
3388 3525 1.648467 GCGAGGGATTTCAGGCACAC 61.648 60.000 0.00 0.00 0.00 3.82
3389 3526 1.377202 GCGAGGGATTTCAGGCACA 60.377 57.895 0.00 0.00 0.00 4.57
3390 3527 2.115291 GGCGAGGGATTTCAGGCAC 61.115 63.158 0.00 0.00 0.00 5.01
3391 3528 2.272146 GGCGAGGGATTTCAGGCA 59.728 61.111 0.00 0.00 0.00 4.75
3392 3529 2.897350 CGGCGAGGGATTTCAGGC 60.897 66.667 0.00 0.00 0.00 4.85
3393 3530 2.897350 GCGGCGAGGGATTTCAGG 60.897 66.667 12.98 0.00 0.00 3.86
3394 3531 2.125147 TGCGGCGAGGGATTTCAG 60.125 61.111 12.98 0.00 0.00 3.02
3395 3532 2.125147 CTGCGGCGAGGGATTTCA 60.125 61.111 12.98 0.00 0.00 2.69
3396 3533 3.577313 GCTGCGGCGAGGGATTTC 61.577 66.667 12.98 0.00 0.00 2.17
3409 3546 4.828925 GGGGAGAGAGCACGCTGC 62.829 72.222 0.00 0.00 45.46 5.25
3410 3547 2.249413 AATGGGGAGAGAGCACGCTG 62.249 60.000 0.00 0.00 0.00 5.18
3411 3548 1.965754 GAATGGGGAGAGAGCACGCT 61.966 60.000 0.00 0.00 0.00 5.07
3412 3549 1.522580 GAATGGGGAGAGAGCACGC 60.523 63.158 0.00 0.00 0.00 5.34
3413 3550 1.144936 GGAATGGGGAGAGAGCACG 59.855 63.158 0.00 0.00 0.00 5.34
3414 3551 1.144936 CGGAATGGGGAGAGAGCAC 59.855 63.158 0.00 0.00 0.00 4.40
3415 3552 1.306141 ACGGAATGGGGAGAGAGCA 60.306 57.895 0.00 0.00 0.00 4.26
3416 3553 3.635510 ACGGAATGGGGAGAGAGC 58.364 61.111 0.00 0.00 0.00 4.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.