Multiple sequence alignment - TraesCS4D01G089500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G089500 chr4D 100.000 2672 0 0 1 2672 65071137 65068466 0.000000e+00 4935
1 TraesCS4D01G089500 chr4D 78.169 284 52 10 2256 2535 469198169 469197892 3.540000e-39 172
2 TraesCS4D01G089500 chr4B 92.826 1157 58 13 694 1834 95370980 95369833 0.000000e+00 1653
3 TraesCS4D01G089500 chr4B 79.050 463 76 15 2103 2563 95369789 95369346 5.590000e-77 298
4 TraesCS4D01G089500 chr4B 80.282 213 23 7 1851 2046 65544271 65544481 2.770000e-30 143
5 TraesCS4D01G089500 chr4A 92.939 1133 60 9 710 1834 530936232 530935112 0.000000e+00 1631
6 TraesCS4D01G089500 chr4A 87.953 855 56 17 703 1529 531117923 531118758 0.000000e+00 965
7 TraesCS4D01G089500 chr4A 90.244 533 45 7 161 688 729712833 729712303 0.000000e+00 689
8 TraesCS4D01G089500 chr4A 77.895 570 97 18 2103 2667 530935068 530934523 7.130000e-86 327
9 TraesCS4D01G089500 chr4A 78.963 347 72 1 2259 2604 9946770 9946424 4.450000e-58 235
10 TraesCS4D01G089500 chr5D 93.768 706 28 6 1 690 459235553 459234848 0.000000e+00 1046
11 TraesCS4D01G089500 chr5D 88.095 210 11 3 1848 2045 384698540 384698333 1.240000e-58 237
12 TraesCS4D01G089500 chr5D 89.474 190 6 1 1875 2050 560189017 560188828 7.440000e-56 228
13 TraesCS4D01G089500 chr3B 93.662 710 26 4 1 692 669434087 669433379 0.000000e+00 1044
14 TraesCS4D01G089500 chr3B 89.573 211 8 3 1850 2050 44204008 44204214 3.410000e-64 255
15 TraesCS4D01G089500 chr3B 82.843 204 21 4 1852 2042 70095940 70095738 1.270000e-38 171
16 TraesCS4D01G089500 chr1B 93.484 706 27 4 1 688 645549615 645548911 0.000000e+00 1031
17 TraesCS4D01G089500 chr1B 80.066 301 56 4 2278 2576 161986951 161987249 1.250000e-53 220
18 TraesCS4D01G089500 chr2B 93.201 706 29 4 1 688 57883869 57884573 0.000000e+00 1020
19 TraesCS4D01G089500 chr2B 89.623 212 11 1 1850 2050 779171677 779171888 2.640000e-65 259
20 TraesCS4D01G089500 chr2B 77.744 328 62 9 2273 2591 15819318 15818993 9.760000e-45 191
21 TraesCS4D01G089500 chr2B 78.275 313 57 9 2273 2576 15918289 15917979 9.760000e-45 191
22 TraesCS4D01G089500 chr2B 77.439 328 63 9 2273 2591 15758132 15757807 4.540000e-43 185
23 TraesCS4D01G089500 chr7D 93.381 695 30 2 1 679 69481471 69482165 0.000000e+00 1014
24 TraesCS4D01G089500 chr7D 92.745 703 33 8 1 686 621180019 621179318 0.000000e+00 1000
25 TraesCS4D01G089500 chr7D 84.651 430 56 8 264 686 17748234 17747808 1.140000e-113 420
26 TraesCS4D01G089500 chr7A 93.050 705 28 6 1 688 71595810 71596510 0.000000e+00 1011
27 TraesCS4D01G089500 chr7A 93.237 695 30 3 1 679 688849878 688850571 0.000000e+00 1007
28 TraesCS4D01G089500 chr7A 87.384 539 57 4 158 688 511581728 511582263 2.270000e-170 608
29 TraesCS4D01G089500 chr7A 79.208 404 82 2 2270 2672 84306471 84306069 2.030000e-71 279
30 TraesCS4D01G089500 chr7A 78.706 371 72 7 2257 2624 455593616 455593982 9.560000e-60 241
31 TraesCS4D01G089500 chr2A 92.898 704 33 3 1 688 774830225 774830927 0.000000e+00 1007
32 TraesCS4D01G089500 chr6A 91.860 516 36 4 178 688 53160790 53160276 0.000000e+00 715
33 TraesCS4D01G089500 chr7B 90.185 540 43 6 161 696 597441469 597440936 0.000000e+00 695
34 TraesCS4D01G089500 chr7B 81.982 222 25 4 1851 2058 424038911 424038691 9.830000e-40 174
35 TraesCS4D01G089500 chrUn 84.358 537 75 9 161 690 75194059 75193525 3.940000e-143 518
36 TraesCS4D01G089500 chrUn 88.551 428 39 6 270 688 33281040 33281466 6.600000e-141 510
37 TraesCS4D01G089500 chrUn 88.318 428 40 6 270 688 356521697 356521271 3.070000e-139 505
38 TraesCS4D01G089500 chr3D 76.636 321 65 10 2219 2534 63018419 63018734 4.570000e-38 169
39 TraesCS4D01G089500 chr3A 80.374 214 30 3 1849 2050 661959665 661959878 4.610000e-33 152
40 TraesCS4D01G089500 chr6B 81.290 155 20 8 1847 1995 707023943 707023792 1.680000e-22 117
41 TraesCS4D01G089500 chr2D 79.630 162 22 7 536 688 486953854 486954013 3.640000e-19 106


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G089500 chr4D 65068466 65071137 2671 True 4935.0 4935 100.000 1 2672 1 chr4D.!!$R1 2671
1 TraesCS4D01G089500 chr4B 95369346 95370980 1634 True 975.5 1653 85.938 694 2563 2 chr4B.!!$R1 1869
2 TraesCS4D01G089500 chr4A 530934523 530936232 1709 True 979.0 1631 85.417 710 2667 2 chr4A.!!$R3 1957
3 TraesCS4D01G089500 chr4A 531117923 531118758 835 False 965.0 965 87.953 703 1529 1 chr4A.!!$F1 826
4 TraesCS4D01G089500 chr4A 729712303 729712833 530 True 689.0 689 90.244 161 688 1 chr4A.!!$R2 527
5 TraesCS4D01G089500 chr5D 459234848 459235553 705 True 1046.0 1046 93.768 1 690 1 chr5D.!!$R2 689
6 TraesCS4D01G089500 chr3B 669433379 669434087 708 True 1044.0 1044 93.662 1 692 1 chr3B.!!$R2 691
7 TraesCS4D01G089500 chr1B 645548911 645549615 704 True 1031.0 1031 93.484 1 688 1 chr1B.!!$R1 687
8 TraesCS4D01G089500 chr2B 57883869 57884573 704 False 1020.0 1020 93.201 1 688 1 chr2B.!!$F1 687
9 TraesCS4D01G089500 chr7D 69481471 69482165 694 False 1014.0 1014 93.381 1 679 1 chr7D.!!$F1 678
10 TraesCS4D01G089500 chr7D 621179318 621180019 701 True 1000.0 1000 92.745 1 686 1 chr7D.!!$R2 685
11 TraesCS4D01G089500 chr7A 71595810 71596510 700 False 1011.0 1011 93.050 1 688 1 chr7A.!!$F1 687
12 TraesCS4D01G089500 chr7A 688849878 688850571 693 False 1007.0 1007 93.237 1 679 1 chr7A.!!$F4 678
13 TraesCS4D01G089500 chr7A 511581728 511582263 535 False 608.0 608 87.384 158 688 1 chr7A.!!$F3 530
14 TraesCS4D01G089500 chr2A 774830225 774830927 702 False 1007.0 1007 92.898 1 688 1 chr2A.!!$F1 687
15 TraesCS4D01G089500 chr6A 53160276 53160790 514 True 715.0 715 91.860 178 688 1 chr6A.!!$R1 510
16 TraesCS4D01G089500 chr7B 597440936 597441469 533 True 695.0 695 90.185 161 696 1 chr7B.!!$R2 535
17 TraesCS4D01G089500 chrUn 75193525 75194059 534 True 518.0 518 84.358 161 690 1 chrUn.!!$R1 529

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
706 733 0.103937 ACACGCCCCACACATTTTTG 59.896 50.0 0.0 0.0 0.0 2.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2001 2082 0.035739 GTCCCAGGTTGGCGAGTTTA 59.964 55.0 0.0 0.0 35.79 2.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
286 288 4.148825 GGATGGACTCGCGCAGGT 62.149 66.667 8.75 4.83 0.00 4.00
302 304 0.900182 AGGTGGATGACGCTGTCTGA 60.900 55.000 9.49 0.00 33.15 3.27
340 342 2.640302 GCAGAGAGACCTGGCACGA 61.640 63.158 0.00 0.00 34.82 4.35
513 519 0.613260 AGGTTTGGCTGCGATGTCTA 59.387 50.000 0.00 0.00 0.00 2.59
571 577 3.131396 CAATTGGATAGGTGTAGCGACC 58.869 50.000 0.00 0.00 36.09 4.79
596 603 1.007580 GCTTAGACGGTGGCTTTAGC 58.992 55.000 0.00 0.00 41.14 3.09
623 650 7.843490 TGCTATTGTATGACTTTGTAAGGTC 57.157 36.000 0.44 0.44 0.00 3.85
644 671 2.700722 TAAAGTGGCCGTATGCATCA 57.299 45.000 0.19 0.00 43.89 3.07
700 727 4.019983 AAAAACACGCCCCACACA 57.980 50.000 0.00 0.00 0.00 3.72
701 728 2.510664 AAAAACACGCCCCACACAT 58.489 47.368 0.00 0.00 0.00 3.21
702 729 0.827368 AAAAACACGCCCCACACATT 59.173 45.000 0.00 0.00 0.00 2.71
703 730 0.827368 AAAACACGCCCCACACATTT 59.173 45.000 0.00 0.00 0.00 2.32
704 731 0.827368 AAACACGCCCCACACATTTT 59.173 45.000 0.00 0.00 0.00 1.82
705 732 0.827368 AACACGCCCCACACATTTTT 59.173 45.000 0.00 0.00 0.00 1.94
706 733 0.103937 ACACGCCCCACACATTTTTG 59.896 50.000 0.00 0.00 0.00 2.44
707 734 0.599728 CACGCCCCACACATTTTTGG 60.600 55.000 0.00 0.00 0.00 3.28
742 777 1.396644 GCGACGACGGACTTCATATC 58.603 55.000 9.67 0.00 40.15 1.63
745 780 3.364664 GCGACGACGGACTTCATATCATA 60.365 47.826 9.67 0.00 40.15 2.15
746 781 4.672024 GCGACGACGGACTTCATATCATAT 60.672 45.833 9.67 0.00 40.15 1.78
747 782 5.446875 GCGACGACGGACTTCATATCATATA 60.447 44.000 9.67 0.00 40.15 0.86
748 783 6.716438 CGACGACGGACTTCATATCATATAT 58.284 40.000 0.00 0.00 35.72 0.86
773 814 5.335127 CCATAATTTCCTTGTTTGCTCTCG 58.665 41.667 0.00 0.00 0.00 4.04
794 835 8.068893 TCTCGTAAGTTGTTTCAGATGTTTAC 57.931 34.615 0.00 0.00 39.48 2.01
837 883 8.009974 CGTAATAACTGAATATTTAGGCTGTGC 58.990 37.037 11.54 0.00 0.00 4.57
882 936 7.755373 AGTTTCAGTTGTTTTTCTTAGCAAGAC 59.245 33.333 0.00 0.00 37.23 3.01
888 954 7.432252 AGTTGTTTTTCTTAGCAAGACGAATTG 59.568 33.333 0.00 0.00 37.23 2.32
907 973 4.147322 CCACCGACGCGCACAATC 62.147 66.667 5.73 0.00 0.00 2.67
990 1062 1.788229 TCCAACCTGTCAGACTCACA 58.212 50.000 0.00 0.00 0.00 3.58
1010 1082 1.603802 AGTGTCACAAATGGCGAAGTG 59.396 47.619 5.62 0.00 30.78 3.16
1301 1373 1.915614 GCGGTCATGAAGCACACCAG 61.916 60.000 16.72 3.87 0.00 4.00
1409 1481 2.028484 GAAGGTGCACGTCGTCCA 59.972 61.111 13.21 0.00 0.00 4.02
1501 1573 2.050714 GCGTGTTCGGTGTCGAGA 60.051 61.111 0.00 0.00 46.75 4.04
1691 1766 5.694231 TGATGAACCAATTCTTCAGTGTG 57.306 39.130 2.47 0.00 41.59 3.82
1695 1770 6.618287 TGAACCAATTCTTCAGTGTGTTAG 57.382 37.500 0.00 0.00 35.69 2.34
1696 1771 6.119536 TGAACCAATTCTTCAGTGTGTTAGT 58.880 36.000 0.00 0.00 35.69 2.24
1697 1772 7.276658 TGAACCAATTCTTCAGTGTGTTAGTA 58.723 34.615 0.00 0.00 35.69 1.82
1698 1773 7.936847 TGAACCAATTCTTCAGTGTGTTAGTAT 59.063 33.333 0.00 0.00 35.69 2.12
1699 1774 7.907214 ACCAATTCTTCAGTGTGTTAGTATC 57.093 36.000 0.00 0.00 0.00 2.24
1700 1775 6.590292 ACCAATTCTTCAGTGTGTTAGTATCG 59.410 38.462 0.00 0.00 0.00 2.92
1701 1776 6.811665 CCAATTCTTCAGTGTGTTAGTATCGA 59.188 38.462 0.00 0.00 0.00 3.59
1720 1798 3.119637 TCGAAAAAGGAATTCCCGAATGC 60.120 43.478 21.22 5.90 40.87 3.56
1736 1814 4.984161 CCGAATGCACTTCATGTTTTTCTT 59.016 37.500 0.00 0.00 35.13 2.52
1762 1843 8.087136 TGTTATTATTTGCTGCATTTCTGTGAA 58.913 29.630 1.84 0.00 0.00 3.18
1777 1858 3.563808 TCTGTGAACATTTTCAGTTCCGG 59.436 43.478 0.00 0.00 42.60 5.14
1788 1869 1.138266 TCAGTTCCGGGGATTCGATTC 59.862 52.381 0.00 0.00 0.00 2.52
1792 1873 0.464036 TCCGGGGATTCGATTCAGTG 59.536 55.000 0.00 0.00 0.00 3.66
1799 1880 2.614057 GGATTCGATTCAGTGCGGAATT 59.386 45.455 9.36 0.00 37.61 2.17
1802 1883 5.220777 GGATTCGATTCAGTGCGGAATTAAA 60.221 40.000 9.36 0.00 37.61 1.52
1834 1915 3.807622 TGTCTTGCTTCCAAACGAGTAAG 59.192 43.478 0.00 0.00 37.07 2.34
1835 1916 3.186613 GTCTTGCTTCCAAACGAGTAAGG 59.813 47.826 0.00 0.00 36.59 2.69
1836 1917 1.519408 TGCTTCCAAACGAGTAAGGC 58.481 50.000 0.00 0.00 0.00 4.35
1839 1920 2.489971 CTTCCAAACGAGTAAGGCACA 58.510 47.619 0.00 0.00 0.00 4.57
1840 1921 2.623878 TCCAAACGAGTAAGGCACAA 57.376 45.000 0.00 0.00 0.00 3.33
1841 1922 2.215196 TCCAAACGAGTAAGGCACAAC 58.785 47.619 0.00 0.00 0.00 3.32
1842 1923 1.265905 CCAAACGAGTAAGGCACAACC 59.734 52.381 0.00 0.00 39.61 3.77
1843 1924 1.944024 CAAACGAGTAAGGCACAACCA 59.056 47.619 0.00 0.00 43.14 3.67
1844 1925 1.589803 AACGAGTAAGGCACAACCAC 58.410 50.000 0.00 0.00 43.14 4.16
1845 1926 0.250166 ACGAGTAAGGCACAACCACC 60.250 55.000 0.00 0.00 43.14 4.61
1846 1927 1.289109 CGAGTAAGGCACAACCACCG 61.289 60.000 0.00 0.00 43.14 4.94
1847 1928 0.953960 GAGTAAGGCACAACCACCGG 60.954 60.000 0.00 0.00 43.14 5.28
1848 1929 1.228033 GTAAGGCACAACCACCGGT 60.228 57.895 0.00 0.00 43.14 5.28
1850 1931 0.106619 TAAGGCACAACCACCGGTTT 60.107 50.000 2.97 0.00 44.33 3.27
1851 1932 0.973496 AAGGCACAACCACCGGTTTT 60.973 50.000 2.97 0.00 44.33 2.43
1852 1933 0.973496 AGGCACAACCACCGGTTTTT 60.973 50.000 2.97 0.00 44.33 1.94
1876 1957 7.489574 TTTTTGATGAATACCCAAAACTTGC 57.510 32.000 0.00 0.00 38.85 4.01
1877 1958 4.433186 TGATGAATACCCAAAACTTGCG 57.567 40.909 0.00 0.00 0.00 4.85
1878 1959 3.823873 TGATGAATACCCAAAACTTGCGT 59.176 39.130 0.00 0.00 0.00 5.24
1879 1960 5.004448 TGATGAATACCCAAAACTTGCGTA 58.996 37.500 0.00 0.00 0.00 4.42
1880 1961 5.650266 TGATGAATACCCAAAACTTGCGTAT 59.350 36.000 0.00 0.00 36.48 3.06
1881 1962 5.554822 TGAATACCCAAAACTTGCGTATC 57.445 39.130 0.00 0.00 34.49 2.24
1882 1963 5.004448 TGAATACCCAAAACTTGCGTATCA 58.996 37.500 0.00 0.00 34.49 2.15
1883 1964 5.650266 TGAATACCCAAAACTTGCGTATCAT 59.350 36.000 0.00 0.00 34.49 2.45
1884 1965 6.151985 TGAATACCCAAAACTTGCGTATCATT 59.848 34.615 0.00 0.00 34.49 2.57
1885 1966 4.864704 ACCCAAAACTTGCGTATCATTT 57.135 36.364 0.00 0.00 0.00 2.32
1886 1967 5.208463 ACCCAAAACTTGCGTATCATTTT 57.792 34.783 0.00 0.00 0.00 1.82
1887 1968 6.334102 ACCCAAAACTTGCGTATCATTTTA 57.666 33.333 0.00 0.00 0.00 1.52
1888 1969 6.930731 ACCCAAAACTTGCGTATCATTTTAT 58.069 32.000 0.00 0.00 0.00 1.40
1889 1970 7.382898 ACCCAAAACTTGCGTATCATTTTATT 58.617 30.769 0.00 0.00 0.00 1.40
1890 1971 7.330700 ACCCAAAACTTGCGTATCATTTTATTG 59.669 33.333 0.00 0.00 0.00 1.90
1891 1972 7.543868 CCCAAAACTTGCGTATCATTTTATTGA 59.456 33.333 0.00 0.00 0.00 2.57
1892 1973 9.086336 CCAAAACTTGCGTATCATTTTATTGAT 57.914 29.630 0.00 0.00 39.60 2.57
1915 1996 9.516546 TGATAGAAGAAGTTAAGAGTGAGTACA 57.483 33.333 0.00 0.00 0.00 2.90
1918 1999 7.607250 AGAAGAAGTTAAGAGTGAGTACATGG 58.393 38.462 0.00 0.00 0.00 3.66
1919 2000 6.287589 AGAAGTTAAGAGTGAGTACATGGG 57.712 41.667 0.00 0.00 0.00 4.00
1920 2001 6.017192 AGAAGTTAAGAGTGAGTACATGGGA 58.983 40.000 0.00 0.00 0.00 4.37
1921 2002 6.670027 AGAAGTTAAGAGTGAGTACATGGGAT 59.330 38.462 0.00 0.00 0.00 3.85
1922 2003 7.839705 AGAAGTTAAGAGTGAGTACATGGGATA 59.160 37.037 0.00 0.00 0.00 2.59
1923 2004 7.349412 AGTTAAGAGTGAGTACATGGGATAC 57.651 40.000 0.00 0.00 0.00 2.24
1924 2005 6.895756 AGTTAAGAGTGAGTACATGGGATACA 59.104 38.462 0.00 0.00 39.74 2.29
1925 2006 7.399191 AGTTAAGAGTGAGTACATGGGATACAA 59.601 37.037 0.00 0.00 39.74 2.41
1926 2007 5.599999 AGAGTGAGTACATGGGATACAAC 57.400 43.478 0.00 0.00 39.74 3.32
1927 2008 5.023452 AGAGTGAGTACATGGGATACAACA 58.977 41.667 0.00 0.00 39.74 3.33
1928 2009 5.663106 AGAGTGAGTACATGGGATACAACAT 59.337 40.000 0.00 0.00 39.74 2.71
1929 2010 6.839134 AGAGTGAGTACATGGGATACAACATA 59.161 38.462 0.00 0.00 39.74 2.29
1930 2011 7.510685 AGAGTGAGTACATGGGATACAACATAT 59.489 37.037 0.00 0.00 39.74 1.78
1931 2012 7.445121 AGTGAGTACATGGGATACAACATATG 58.555 38.462 0.00 0.00 39.74 1.78
1932 2013 7.290014 AGTGAGTACATGGGATACAACATATGA 59.710 37.037 10.38 0.00 39.74 2.15
1933 2014 7.385205 GTGAGTACATGGGATACAACATATGAC 59.615 40.741 10.38 0.00 39.74 3.06
1934 2015 7.070571 TGAGTACATGGGATACAACATATGACA 59.929 37.037 10.38 0.00 39.74 3.58
1935 2016 7.977818 AGTACATGGGATACAACATATGACAT 58.022 34.615 10.38 0.00 39.74 3.06
1936 2017 7.879677 AGTACATGGGATACAACATATGACATG 59.120 37.037 10.38 7.92 39.74 3.21
1937 2018 6.840527 ACATGGGATACAACATATGACATGA 58.159 36.000 10.38 0.00 39.74 3.07
1938 2019 7.289310 ACATGGGATACAACATATGACATGAA 58.711 34.615 10.38 0.00 39.74 2.57
1939 2020 7.229306 ACATGGGATACAACATATGACATGAAC 59.771 37.037 10.38 0.00 39.74 3.18
1940 2021 5.757808 TGGGATACAACATATGACATGAACG 59.242 40.000 10.38 0.00 39.74 3.95
1941 2022 5.334105 GGGATACAACATATGACATGAACGC 60.334 44.000 10.38 7.16 39.74 4.84
1942 2023 5.236263 GGATACAACATATGACATGAACGCA 59.764 40.000 10.38 0.00 0.00 5.24
1943 2024 4.604843 ACAACATATGACATGAACGCAG 57.395 40.909 10.38 0.00 0.00 5.18
1944 2025 4.252878 ACAACATATGACATGAACGCAGA 58.747 39.130 10.38 0.00 0.00 4.26
1945 2026 4.694982 ACAACATATGACATGAACGCAGAA 59.305 37.500 10.38 0.00 0.00 3.02
1946 2027 5.163824 ACAACATATGACATGAACGCAGAAG 60.164 40.000 10.38 0.00 0.00 2.85
1947 2028 3.873361 ACATATGACATGAACGCAGAAGG 59.127 43.478 10.38 0.00 0.00 3.46
1948 2029 1.089920 ATGACATGAACGCAGAAGGC 58.910 50.000 0.00 0.00 39.90 4.35
1949 2030 0.250252 TGACATGAACGCAGAAGGCA 60.250 50.000 0.00 0.00 45.17 4.75
1950 2031 1.089920 GACATGAACGCAGAAGGCAT 58.910 50.000 0.00 0.00 45.17 4.40
1951 2032 0.806868 ACATGAACGCAGAAGGCATG 59.193 50.000 0.00 0.00 45.17 4.06
1952 2033 1.089112 CATGAACGCAGAAGGCATGA 58.911 50.000 0.00 0.00 45.17 3.07
1953 2034 1.089920 ATGAACGCAGAAGGCATGAC 58.910 50.000 0.00 0.00 45.17 3.06
1954 2035 0.250252 TGAACGCAGAAGGCATGACA 60.250 50.000 0.00 0.00 45.17 3.58
1955 2036 1.089920 GAACGCAGAAGGCATGACAT 58.910 50.000 0.00 0.00 45.17 3.06
1956 2037 0.806868 AACGCAGAAGGCATGACATG 59.193 50.000 11.27 11.27 45.17 3.21
1957 2038 1.028330 ACGCAGAAGGCATGACATGG 61.028 55.000 17.03 0.49 45.17 3.66
1964 2045 2.491152 GCATGACATGGCAACCGG 59.509 61.111 17.03 0.00 0.00 5.28
1965 2046 2.045708 GCATGACATGGCAACCGGA 61.046 57.895 17.03 0.00 0.00 5.14
1966 2047 1.996786 GCATGACATGGCAACCGGAG 61.997 60.000 17.03 0.15 0.00 4.63
1967 2048 1.750399 ATGACATGGCAACCGGAGC 60.750 57.895 9.46 12.34 0.00 4.70
1968 2049 2.359850 GACATGGCAACCGGAGCA 60.360 61.111 21.55 10.72 0.00 4.26
1969 2050 2.360350 ACATGGCAACCGGAGCAG 60.360 61.111 21.55 14.19 0.00 4.24
1970 2051 2.046023 CATGGCAACCGGAGCAGA 60.046 61.111 21.55 10.43 0.00 4.26
1971 2052 2.110967 CATGGCAACCGGAGCAGAG 61.111 63.158 21.55 9.18 0.00 3.35
1972 2053 3.335356 ATGGCAACCGGAGCAGAGG 62.335 63.158 21.55 0.00 0.00 3.69
1973 2054 4.785453 GGCAACCGGAGCAGAGGG 62.785 72.222 21.55 0.00 0.00 4.30
1974 2055 3.706373 GCAACCGGAGCAGAGGGA 61.706 66.667 9.46 0.00 0.00 4.20
1975 2056 2.266055 CAACCGGAGCAGAGGGAC 59.734 66.667 9.46 0.00 0.00 4.46
1976 2057 2.203788 AACCGGAGCAGAGGGACA 60.204 61.111 9.46 0.00 0.00 4.02
1977 2058 2.584391 AACCGGAGCAGAGGGACAC 61.584 63.158 9.46 0.00 0.00 3.67
1978 2059 4.135153 CCGGAGCAGAGGGACACG 62.135 72.222 0.00 0.00 0.00 4.49
1979 2060 4.135153 CGGAGCAGAGGGACACGG 62.135 72.222 0.00 0.00 0.00 4.94
1980 2061 3.775654 GGAGCAGAGGGACACGGG 61.776 72.222 0.00 0.00 0.00 5.28
1981 2062 2.680352 GAGCAGAGGGACACGGGA 60.680 66.667 0.00 0.00 0.00 5.14
1982 2063 2.039624 AGCAGAGGGACACGGGAT 59.960 61.111 0.00 0.00 0.00 3.85
1983 2064 2.187946 GCAGAGGGACACGGGATG 59.812 66.667 0.00 0.00 0.00 3.51
1984 2065 2.187946 CAGAGGGACACGGGATGC 59.812 66.667 0.00 0.00 0.00 3.91
1985 2066 2.039624 AGAGGGACACGGGATGCT 59.960 61.111 0.00 0.00 0.00 3.79
1986 2067 2.060980 AGAGGGACACGGGATGCTC 61.061 63.158 0.00 0.00 0.00 4.26
1987 2068 2.284625 AGGGACACGGGATGCTCA 60.285 61.111 0.00 0.00 0.00 4.26
1988 2069 2.187946 GGGACACGGGATGCTCAG 59.812 66.667 0.00 0.00 0.00 3.35
1989 2070 2.512515 GGACACGGGATGCTCAGC 60.513 66.667 0.00 0.00 0.00 4.26
1990 2071 2.512515 GACACGGGATGCTCAGCC 60.513 66.667 0.00 0.00 35.80 4.85
1996 2077 4.421365 GGATGCTCAGCCCAAACA 57.579 55.556 0.00 0.00 0.00 2.83
1997 2078 1.885871 GGATGCTCAGCCCAAACAC 59.114 57.895 0.00 0.00 0.00 3.32
1998 2079 1.503542 GATGCTCAGCCCAAACACG 59.496 57.895 0.00 0.00 0.00 4.49
1999 2080 1.926511 GATGCTCAGCCCAAACACGG 61.927 60.000 0.00 0.00 0.00 4.94
2005 2086 4.957266 GCCCAAACACGGCTAAAC 57.043 55.556 0.00 0.00 43.48 2.01
2006 2087 2.337361 GCCCAAACACGGCTAAACT 58.663 52.632 0.00 0.00 43.48 2.66
2007 2088 0.240145 GCCCAAACACGGCTAAACTC 59.760 55.000 0.00 0.00 43.48 3.01
2008 2089 0.515564 CCCAAACACGGCTAAACTCG 59.484 55.000 0.00 0.00 0.00 4.18
2009 2090 0.110373 CCAAACACGGCTAAACTCGC 60.110 55.000 0.00 0.00 0.00 5.03
2010 2091 0.110373 CAAACACGGCTAAACTCGCC 60.110 55.000 0.00 0.00 44.11 5.54
2015 2096 4.716003 GGCTAAACTCGCCAACCT 57.284 55.556 0.00 0.00 46.77 3.50
2016 2097 2.171635 GGCTAAACTCGCCAACCTG 58.828 57.895 0.00 0.00 46.77 4.00
2017 2098 1.305930 GGCTAAACTCGCCAACCTGG 61.306 60.000 0.00 0.00 46.77 4.45
2018 2099 1.305930 GCTAAACTCGCCAACCTGGG 61.306 60.000 0.00 0.00 38.19 4.45
2019 2100 0.323629 CTAAACTCGCCAACCTGGGA 59.676 55.000 0.00 0.00 38.19 4.37
2020 2101 0.035739 TAAACTCGCCAACCTGGGAC 59.964 55.000 0.00 0.00 38.19 4.46
2021 2102 3.530910 AACTCGCCAACCTGGGACG 62.531 63.158 0.00 0.00 38.19 4.79
2035 2116 2.975799 GACGCAGCCCGAACCAAA 60.976 61.111 1.04 0.00 41.02 3.28
2036 2117 3.249973 GACGCAGCCCGAACCAAAC 62.250 63.158 1.04 0.00 41.02 2.93
2037 2118 4.038080 CGCAGCCCGAACCAAACC 62.038 66.667 0.00 0.00 40.02 3.27
2038 2119 2.909965 GCAGCCCGAACCAAACCA 60.910 61.111 0.00 0.00 0.00 3.67
2039 2120 2.275380 GCAGCCCGAACCAAACCAT 61.275 57.895 0.00 0.00 0.00 3.55
2040 2121 1.883021 CAGCCCGAACCAAACCATC 59.117 57.895 0.00 0.00 0.00 3.51
2041 2122 0.893270 CAGCCCGAACCAAACCATCA 60.893 55.000 0.00 0.00 0.00 3.07
2042 2123 0.039618 AGCCCGAACCAAACCATCAT 59.960 50.000 0.00 0.00 0.00 2.45
2043 2124 0.173255 GCCCGAACCAAACCATCATG 59.827 55.000 0.00 0.00 0.00 3.07
2047 2128 2.556189 CCGAACCAAACCATCATGACAA 59.444 45.455 0.00 0.00 0.00 3.18
2049 2130 3.611530 CGAACCAAACCATCATGACAACC 60.612 47.826 0.00 0.00 0.00 3.77
2051 2132 2.627699 ACCAAACCATCATGACAACCAC 59.372 45.455 0.00 0.00 0.00 4.16
2064 2145 4.579127 ACCACCAGCTTTGGTCAC 57.421 55.556 10.54 0.00 44.54 3.67
2067 2148 0.540365 CCACCAGCTTTGGTCACCAT 60.540 55.000 0.00 0.00 40.85 3.55
2068 2149 1.331214 CACCAGCTTTGGTCACCATT 58.669 50.000 0.00 0.00 40.85 3.16
2069 2150 2.513753 CACCAGCTTTGGTCACCATTA 58.486 47.619 0.00 0.00 40.85 1.90
2070 2151 2.890311 CACCAGCTTTGGTCACCATTAA 59.110 45.455 0.00 0.00 40.85 1.40
2071 2152 3.511146 CACCAGCTTTGGTCACCATTAAT 59.489 43.478 0.00 0.00 40.85 1.40
2072 2153 4.021192 CACCAGCTTTGGTCACCATTAATT 60.021 41.667 0.00 0.00 40.85 1.40
2074 2155 5.418840 ACCAGCTTTGGTCACCATTAATTAG 59.581 40.000 0.00 0.00 37.74 1.73
2076 2157 6.404734 CCAGCTTTGGTCACCATTAATTAGAC 60.405 42.308 0.00 4.04 31.53 2.59
2077 2158 6.150976 CAGCTTTGGTCACCATTAATTAGACA 59.849 38.462 0.00 0.00 31.53 3.41
2078 2159 6.375455 AGCTTTGGTCACCATTAATTAGACAG 59.625 38.462 0.00 4.64 31.53 3.51
2079 2160 6.404734 GCTTTGGTCACCATTAATTAGACAGG 60.405 42.308 0.00 1.19 31.53 4.00
2080 2161 6.381498 TTGGTCACCATTAATTAGACAGGA 57.619 37.500 0.00 0.00 31.53 3.86
2082 2163 5.123936 GGTCACCATTAATTAGACAGGACC 58.876 45.833 11.59 10.15 34.92 4.46
2083 2164 5.338871 GGTCACCATTAATTAGACAGGACCA 60.339 44.000 16.47 0.00 40.50 4.02
2084 2165 5.817816 GTCACCATTAATTAGACAGGACCAG 59.182 44.000 0.00 0.00 0.00 4.00
2085 2166 5.104527 TCACCATTAATTAGACAGGACCAGG 60.105 44.000 0.00 0.00 0.00 4.45
2086 2167 5.036916 ACCATTAATTAGACAGGACCAGGA 58.963 41.667 0.00 0.00 0.00 3.86
2087 2168 5.104485 ACCATTAATTAGACAGGACCAGGAC 60.104 44.000 0.00 0.00 0.00 3.85
2088 2169 5.131142 CCATTAATTAGACAGGACCAGGACT 59.869 44.000 0.00 0.00 0.00 3.85
2089 2170 5.934402 TTAATTAGACAGGACCAGGACTC 57.066 43.478 0.00 0.00 0.00 3.36
2090 2171 2.233305 TTAGACAGGACCAGGACTCC 57.767 55.000 0.00 0.00 0.00 3.85
2091 2172 1.081481 TAGACAGGACCAGGACTCCA 58.919 55.000 0.00 0.00 0.00 3.86
2092 2173 0.252012 AGACAGGACCAGGACTCCAG 60.252 60.000 0.00 0.00 0.00 3.86
2093 2174 1.229336 ACAGGACCAGGACTCCAGG 60.229 63.158 4.94 4.94 36.18 4.45
2094 2175 1.079256 CAGGACCAGGACTCCAGGA 59.921 63.158 13.42 0.00 34.08 3.86
2095 2176 0.975040 CAGGACCAGGACTCCAGGAG 60.975 65.000 15.72 15.72 34.08 3.69
2096 2177 1.687493 GGACCAGGACTCCAGGAGG 60.687 68.421 21.31 5.75 34.08 4.30
2097 2178 1.388531 GACCAGGACTCCAGGAGGA 59.611 63.158 21.31 0.00 43.21 3.71
2111 2192 2.035704 CAGGAGGAGAATGGAGACGATG 59.964 54.545 0.00 0.00 0.00 3.84
2156 2237 2.521126 CCCTCCACCCAAATAAACGTT 58.479 47.619 0.00 0.00 0.00 3.99
2160 2241 4.034742 CCTCCACCCAAATAAACGTTATCG 59.965 45.833 0.00 0.00 43.34 2.92
2212 2293 3.250464 CGTACTGTACGTAGGAGCATC 57.750 52.381 27.27 0.00 46.41 3.91
2223 2304 4.081087 ACGTAGGAGCATCTACACCAAATT 60.081 41.667 14.14 0.00 39.51 1.82
2244 2326 2.061848 TGACCCCTCAAATTCTGTGGA 58.938 47.619 9.09 0.00 40.58 4.02
2247 2329 2.379907 ACCCCTCAAATTCTGTGGACAT 59.620 45.455 9.09 0.00 40.58 3.06
2249 2331 3.561960 CCCCTCAAATTCTGTGGACATGA 60.562 47.826 0.00 0.00 40.58 3.07
2251 2333 4.097437 CCCTCAAATTCTGTGGACATGATG 59.903 45.833 0.00 0.00 40.58 3.07
2253 2335 4.080687 TCAAATTCTGTGGACATGATGCA 58.919 39.130 0.00 0.00 0.00 3.96
2255 2337 5.010820 TCAAATTCTGTGGACATGATGCAAA 59.989 36.000 0.00 0.00 0.00 3.68
2263 2345 0.590682 ACATGATGCAAACGCGTTCA 59.409 45.000 26.77 20.06 0.00 3.18
2268 2350 2.127758 GCAAACGCGTTCACGGAG 60.128 61.111 26.77 11.86 40.23 4.63
2282 2364 1.924731 ACGGAGAGTGATTGGTCAGA 58.075 50.000 0.00 0.00 34.36 3.27
2284 2366 1.134965 CGGAGAGTGATTGGTCAGACC 60.135 57.143 13.35 13.35 39.22 3.85
2290 2372 3.744660 AGTGATTGGTCAGACCTCAAAC 58.255 45.455 20.82 13.19 39.58 2.93
2294 2376 5.940470 GTGATTGGTCAGACCTCAAACTATT 59.060 40.000 20.82 0.00 39.58 1.73
2307 2389 5.176407 TCAAACTATTGTTTCCACAACCG 57.824 39.130 2.10 0.00 45.88 4.44
2308 2390 3.636282 AACTATTGTTTCCACAACCGC 57.364 42.857 0.00 0.00 45.88 5.68
2364 2446 3.818210 TCACATGCACGTGAAACCTAATT 59.182 39.130 22.23 0.00 42.82 1.40
2372 2454 5.681880 CACGTGAAACCTAATTTTAAGCGA 58.318 37.500 10.90 0.00 0.00 4.93
2374 2456 6.633634 CACGTGAAACCTAATTTTAAGCGAAA 59.366 34.615 10.90 0.00 0.00 3.46
2377 2459 7.377662 CGTGAAACCTAATTTTAAGCGAAACTT 59.622 33.333 0.00 0.00 42.76 2.66
2380 2462 8.936070 AAACCTAATTTTAAGCGAAACTTGTT 57.064 26.923 0.00 0.00 39.58 2.83
2412 2495 1.379443 TCTATGTCCGACGGCTGGT 60.379 57.895 9.66 0.00 0.00 4.00
2426 2509 4.292145 TGGTTGCGCCCCATGGAA 62.292 61.111 15.22 0.00 36.04 3.53
2438 2521 0.961019 CCATGGAATATTGGTGCGGG 59.039 55.000 5.56 0.00 0.00 6.13
2440 2523 0.106268 ATGGAATATTGGTGCGGGCA 60.106 50.000 0.00 0.00 0.00 5.36
2441 2524 1.034838 TGGAATATTGGTGCGGGCAC 61.035 55.000 15.18 15.18 45.49 5.01
2460 2543 3.607741 CACAGTCGAGGTAGAGTAGGAA 58.392 50.000 0.00 0.00 0.00 3.36
2492 2575 1.536073 CCAGCTCACGGGACTCAAGA 61.536 60.000 0.00 0.00 31.88 3.02
2500 2583 2.504244 GGACTCAAGACGCCGTCG 60.504 66.667 12.13 0.00 37.67 5.12
2524 2607 0.390860 CCATGCCCTACTCTTCCTCG 59.609 60.000 0.00 0.00 0.00 4.63
2526 2609 1.067821 CATGCCCTACTCTTCCTCGTC 59.932 57.143 0.00 0.00 0.00 4.20
2527 2610 0.331954 TGCCCTACTCTTCCTCGTCT 59.668 55.000 0.00 0.00 0.00 4.18
2537 2620 4.180946 CCTCGTCTGAGCCCGTCG 62.181 72.222 0.00 0.00 41.13 5.12
2542 2625 3.381983 TCTGAGCCCGTCGCATGT 61.382 61.111 0.00 0.00 41.38 3.21
2549 2632 3.604202 CCGTCGCATGTACGTCGC 61.604 66.667 17.56 0.00 41.92 5.19
2550 2633 2.576053 CGTCGCATGTACGTCGCT 60.576 61.111 12.74 0.00 37.72 4.93
2553 2636 2.506217 CGCATGTACGTCGCTGGT 60.506 61.111 0.00 0.00 0.00 4.00
2554 2637 2.092291 CGCATGTACGTCGCTGGTT 61.092 57.895 0.00 0.00 0.00 3.67
2563 2646 1.354337 CGTCGCTGGTTGATGTGAGG 61.354 60.000 0.00 0.00 0.00 3.86
2566 2649 0.320683 CGCTGGTTGATGTGAGGTCA 60.321 55.000 0.00 0.00 0.00 4.02
2576 2659 5.120054 TGATGTGAGGTCAATGATGGATT 57.880 39.130 0.00 0.00 0.00 3.01
2578 2661 3.534554 TGTGAGGTCAATGATGGATTCG 58.465 45.455 0.00 0.00 0.00 3.34
2587 2670 0.892063 TGATGGATTCGTCGTGGTCA 59.108 50.000 0.00 0.00 0.00 4.02
2592 2675 0.526662 GATTCGTCGTGGTCAGAGGT 59.473 55.000 0.00 0.00 0.00 3.85
2600 2683 1.160137 GTGGTCAGAGGTCAACATGC 58.840 55.000 0.00 0.00 0.00 4.06
2604 2687 0.994247 TCAGAGGTCAACATGCCCAT 59.006 50.000 0.00 0.00 0.00 4.00
2607 2690 1.064906 AGAGGTCAACATGCCCATGAG 60.065 52.381 14.69 7.09 41.20 2.90
2610 2693 1.098050 GTCAACATGCCCATGAGGAC 58.902 55.000 14.69 15.16 41.20 3.85
2611 2694 0.697658 TCAACATGCCCATGAGGACA 59.302 50.000 14.69 0.00 41.20 4.02
2612 2695 0.813184 CAACATGCCCATGAGGACAC 59.187 55.000 14.69 0.00 41.20 3.67
2613 2696 0.677731 AACATGCCCATGAGGACACG 60.678 55.000 14.69 0.00 41.20 4.49
2614 2697 1.820906 CATGCCCATGAGGACACGG 60.821 63.158 2.09 0.00 41.20 4.94
2615 2698 2.300967 ATGCCCATGAGGACACGGT 61.301 57.895 0.00 0.00 38.24 4.83
2625 2708 4.364409 GACACGGTTGCGGCGTTC 62.364 66.667 9.37 0.00 0.00 3.95
2650 2733 4.910585 CCGGCCACCTGTATCGGC 62.911 72.222 2.24 0.00 45.47 5.54
2667 2751 4.838486 CGCCGAGAGTGCGACTCC 62.838 72.222 11.24 4.57 46.18 3.85
2668 2752 3.749064 GCCGAGAGTGCGACTCCA 61.749 66.667 11.24 0.00 46.18 3.86
2669 2753 2.179517 CCGAGAGTGCGACTCCAC 59.820 66.667 11.24 6.78 46.18 4.02
2670 2754 2.179517 CGAGAGTGCGACTCCACC 59.820 66.667 11.24 3.24 46.18 4.61
2671 2755 2.336478 CGAGAGTGCGACTCCACCT 61.336 63.158 11.24 0.00 46.18 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
286 288 1.212751 CGTCAGACAGCGTCATCCA 59.787 57.895 0.41 0.00 34.60 3.41
302 304 3.001902 ATCGACGCCACCATGACGT 62.002 57.895 0.00 0.00 43.83 4.34
307 309 4.094646 TGCCATCGACGCCACCAT 62.095 61.111 4.01 0.00 0.00 3.55
340 342 6.286240 TCAGAGTTGTACTGTTGCATCTAT 57.714 37.500 0.00 0.00 36.81 1.98
513 519 1.859574 AGCCTGGGCCTAATACCAAAT 59.140 47.619 4.53 0.00 43.17 2.32
571 577 1.897398 GCCACCGTCTAAGCACAACG 61.897 60.000 0.00 0.00 36.22 4.10
596 603 7.336931 ACCTTACAAAGTCATACAATAGCAAGG 59.663 37.037 0.00 0.00 34.00 3.61
623 650 2.877786 TGATGCATACGGCCACTTTATG 59.122 45.455 2.24 4.96 43.89 1.90
644 671 3.790437 CGGCCTCTGCATCTGGGT 61.790 66.667 0.00 0.00 40.13 4.51
690 717 4.671406 CCAAAAATGTGTGGGGCG 57.329 55.556 0.00 0.00 0.00 6.13
696 723 1.474855 GCCTGCAACCCAAAAATGTGT 60.475 47.619 0.00 0.00 0.00 3.72
697 724 1.228533 GCCTGCAACCCAAAAATGTG 58.771 50.000 0.00 0.00 0.00 3.21
698 725 0.249826 CGCCTGCAACCCAAAAATGT 60.250 50.000 0.00 0.00 0.00 2.71
699 726 0.033228 TCGCCTGCAACCCAAAAATG 59.967 50.000 0.00 0.00 0.00 2.32
700 727 0.975887 ATCGCCTGCAACCCAAAAAT 59.024 45.000 0.00 0.00 0.00 1.82
701 728 0.755686 AATCGCCTGCAACCCAAAAA 59.244 45.000 0.00 0.00 0.00 1.94
702 729 1.543802 CTAATCGCCTGCAACCCAAAA 59.456 47.619 0.00 0.00 0.00 2.44
703 730 1.173043 CTAATCGCCTGCAACCCAAA 58.827 50.000 0.00 0.00 0.00 3.28
704 731 0.679640 CCTAATCGCCTGCAACCCAA 60.680 55.000 0.00 0.00 0.00 4.12
705 732 1.077787 CCTAATCGCCTGCAACCCA 60.078 57.895 0.00 0.00 0.00 4.51
706 733 2.481471 GCCTAATCGCCTGCAACCC 61.481 63.158 0.00 0.00 0.00 4.11
707 734 2.823829 CGCCTAATCGCCTGCAACC 61.824 63.158 0.00 0.00 0.00 3.77
742 777 8.928733 GCAAACAAGGAAATTATGGCATATATG 58.071 33.333 8.24 8.45 0.00 1.78
745 780 7.070322 AGAGCAAACAAGGAAATTATGGCATAT 59.930 33.333 8.24 0.00 0.00 1.78
746 781 6.380846 AGAGCAAACAAGGAAATTATGGCATA 59.619 34.615 2.32 2.32 0.00 3.14
747 782 5.188359 AGAGCAAACAAGGAAATTATGGCAT 59.812 36.000 4.88 4.88 0.00 4.40
748 783 4.527816 AGAGCAAACAAGGAAATTATGGCA 59.472 37.500 0.00 0.00 0.00 4.92
773 814 8.280497 ACATCGTAAACATCTGAAACAACTTAC 58.720 33.333 0.00 0.00 0.00 2.34
837 883 6.636447 TGAAACTGACGATTTTTGTATGCAAG 59.364 34.615 0.00 0.00 35.82 4.01
882 936 2.776072 GCGTCGGTGGACAATTCG 59.224 61.111 0.00 0.00 43.61 3.34
907 973 0.249657 GACTCTGGCTGCCGGAATAG 60.250 60.000 28.82 20.16 38.58 1.73
990 1062 1.603802 CACTTCGCCATTTGTGACACT 59.396 47.619 7.20 0.00 31.91 3.55
1461 1533 1.260561 GTCGCGTTCTGCTTCTTGAAA 59.739 47.619 5.77 0.00 43.27 2.69
1691 1766 6.536224 TCGGGAATTCCTTTTTCGATACTAAC 59.464 38.462 23.63 0.64 35.95 2.34
1695 1770 5.806366 TTCGGGAATTCCTTTTTCGATAC 57.194 39.130 23.63 2.42 35.95 2.24
1696 1771 5.220970 GCATTCGGGAATTCCTTTTTCGATA 60.221 40.000 23.63 13.49 35.95 2.92
1697 1772 4.440112 GCATTCGGGAATTCCTTTTTCGAT 60.440 41.667 23.63 10.57 35.95 3.59
1698 1773 3.119637 GCATTCGGGAATTCCTTTTTCGA 60.120 43.478 23.63 19.37 35.95 3.71
1699 1774 3.179048 GCATTCGGGAATTCCTTTTTCG 58.821 45.455 23.63 17.47 35.95 3.46
1700 1775 3.926527 GTGCATTCGGGAATTCCTTTTTC 59.073 43.478 23.63 6.05 35.95 2.29
1701 1776 3.578282 AGTGCATTCGGGAATTCCTTTTT 59.422 39.130 23.63 4.74 35.95 1.94
1736 1814 7.600960 TCACAGAAATGCAGCAAATAATAACA 58.399 30.769 0.00 0.00 0.00 2.41
1749 1830 5.904941 ACTGAAAATGTTCACAGAAATGCA 58.095 33.333 0.00 0.00 38.88 3.96
1762 1843 2.899303 ATCCCCGGAACTGAAAATGT 57.101 45.000 0.73 0.00 0.00 2.71
1777 1858 0.179084 TCCGCACTGAATCGAATCCC 60.179 55.000 0.00 0.00 0.00 3.85
1788 1869 0.098728 CGGCCTTTAATTCCGCACTG 59.901 55.000 0.00 0.00 36.53 3.66
1799 1880 1.173043 CAAGACAATGGCGGCCTTTA 58.827 50.000 21.46 0.00 0.00 1.85
1802 1883 3.064324 GCAAGACAATGGCGGCCT 61.064 61.111 21.46 0.00 0.00 5.19
1834 1915 1.518302 AAAAACCGGTGGTTGTGCC 59.482 52.632 8.52 0.00 46.20 5.01
1852 1933 6.201806 CGCAAGTTTTGGGTATTCATCAAAAA 59.798 34.615 0.00 0.00 40.54 1.94
1853 1934 5.694006 CGCAAGTTTTGGGTATTCATCAAAA 59.306 36.000 0.00 0.00 37.83 2.44
1854 1935 5.226396 CGCAAGTTTTGGGTATTCATCAAA 58.774 37.500 0.00 0.00 38.64 2.69
1855 1936 4.804108 CGCAAGTTTTGGGTATTCATCAA 58.196 39.130 0.00 0.00 38.64 2.57
1856 1937 4.433186 CGCAAGTTTTGGGTATTCATCA 57.567 40.909 0.00 0.00 38.64 3.07
1889 1970 9.516546 TGTACTCACTCTTAACTTCTTCTATCA 57.483 33.333 0.00 0.00 0.00 2.15
1892 1973 8.740906 CCATGTACTCACTCTTAACTTCTTCTA 58.259 37.037 0.00 0.00 0.00 2.10
1893 1974 7.310113 CCCATGTACTCACTCTTAACTTCTTCT 60.310 40.741 0.00 0.00 0.00 2.85
1894 1975 6.814146 CCCATGTACTCACTCTTAACTTCTTC 59.186 42.308 0.00 0.00 0.00 2.87
1895 1976 6.497259 TCCCATGTACTCACTCTTAACTTCTT 59.503 38.462 0.00 0.00 0.00 2.52
1896 1977 6.017192 TCCCATGTACTCACTCTTAACTTCT 58.983 40.000 0.00 0.00 0.00 2.85
1897 1978 6.282199 TCCCATGTACTCACTCTTAACTTC 57.718 41.667 0.00 0.00 0.00 3.01
1898 1979 6.875972 ATCCCATGTACTCACTCTTAACTT 57.124 37.500 0.00 0.00 0.00 2.66
1899 1980 6.895756 TGTATCCCATGTACTCACTCTTAACT 59.104 38.462 0.00 0.00 0.00 2.24
1900 1981 7.108841 TGTATCCCATGTACTCACTCTTAAC 57.891 40.000 0.00 0.00 0.00 2.01
1901 1982 7.179516 TGTTGTATCCCATGTACTCACTCTTAA 59.820 37.037 0.00 0.00 0.00 1.85
1902 1983 6.666113 TGTTGTATCCCATGTACTCACTCTTA 59.334 38.462 0.00 0.00 0.00 2.10
1903 1984 5.483937 TGTTGTATCCCATGTACTCACTCTT 59.516 40.000 0.00 0.00 0.00 2.85
1904 1985 5.023452 TGTTGTATCCCATGTACTCACTCT 58.977 41.667 0.00 0.00 0.00 3.24
1905 1986 5.339008 TGTTGTATCCCATGTACTCACTC 57.661 43.478 0.00 0.00 0.00 3.51
1906 1987 5.957771 ATGTTGTATCCCATGTACTCACT 57.042 39.130 0.00 0.00 0.00 3.41
1907 1988 7.385205 GTCATATGTTGTATCCCATGTACTCAC 59.615 40.741 1.90 0.00 0.00 3.51
1908 1989 7.070571 TGTCATATGTTGTATCCCATGTACTCA 59.929 37.037 1.90 0.00 0.00 3.41
1909 1990 7.441836 TGTCATATGTTGTATCCCATGTACTC 58.558 38.462 1.90 0.00 0.00 2.59
1910 1991 7.373617 TGTCATATGTTGTATCCCATGTACT 57.626 36.000 1.90 0.00 0.00 2.73
1911 1992 7.877612 TCATGTCATATGTTGTATCCCATGTAC 59.122 37.037 1.90 0.00 0.00 2.90
1912 1993 7.972301 TCATGTCATATGTTGTATCCCATGTA 58.028 34.615 1.90 0.00 0.00 2.29
1913 1994 6.840527 TCATGTCATATGTTGTATCCCATGT 58.159 36.000 1.90 0.00 0.00 3.21
1914 1995 7.571798 CGTTCATGTCATATGTTGTATCCCATG 60.572 40.741 1.90 0.00 0.00 3.66
1915 1996 6.427853 CGTTCATGTCATATGTTGTATCCCAT 59.572 38.462 1.90 0.00 0.00 4.00
1916 1997 5.757808 CGTTCATGTCATATGTTGTATCCCA 59.242 40.000 1.90 0.00 0.00 4.37
1917 1998 5.334105 GCGTTCATGTCATATGTTGTATCCC 60.334 44.000 1.90 0.00 0.00 3.85
1918 1999 5.236263 TGCGTTCATGTCATATGTTGTATCC 59.764 40.000 1.90 0.00 0.00 2.59
1919 2000 6.200854 TCTGCGTTCATGTCATATGTTGTATC 59.799 38.462 1.90 0.00 0.00 2.24
1920 2001 6.048509 TCTGCGTTCATGTCATATGTTGTAT 58.951 36.000 1.90 0.00 0.00 2.29
1921 2002 5.415221 TCTGCGTTCATGTCATATGTTGTA 58.585 37.500 1.90 0.00 0.00 2.41
1922 2003 4.252878 TCTGCGTTCATGTCATATGTTGT 58.747 39.130 1.90 0.00 0.00 3.32
1923 2004 4.863152 TCTGCGTTCATGTCATATGTTG 57.137 40.909 1.90 0.13 0.00 3.33
1924 2005 4.333649 CCTTCTGCGTTCATGTCATATGTT 59.666 41.667 1.90 0.00 0.00 2.71
1925 2006 3.873361 CCTTCTGCGTTCATGTCATATGT 59.127 43.478 1.90 0.00 0.00 2.29
1926 2007 3.303593 GCCTTCTGCGTTCATGTCATATG 60.304 47.826 0.00 0.00 0.00 1.78
1927 2008 2.874701 GCCTTCTGCGTTCATGTCATAT 59.125 45.455 0.00 0.00 0.00 1.78
1928 2009 2.279741 GCCTTCTGCGTTCATGTCATA 58.720 47.619 0.00 0.00 0.00 2.15
1929 2010 1.089920 GCCTTCTGCGTTCATGTCAT 58.910 50.000 0.00 0.00 0.00 3.06
1930 2011 0.250252 TGCCTTCTGCGTTCATGTCA 60.250 50.000 0.00 0.00 45.60 3.58
1931 2012 1.089920 ATGCCTTCTGCGTTCATGTC 58.910 50.000 0.00 0.00 45.60 3.06
1932 2013 0.806868 CATGCCTTCTGCGTTCATGT 59.193 50.000 0.00 0.00 45.60 3.21
1933 2014 1.089112 TCATGCCTTCTGCGTTCATG 58.911 50.000 0.00 0.00 45.60 3.07
1934 2015 1.089920 GTCATGCCTTCTGCGTTCAT 58.910 50.000 0.00 0.00 45.60 2.57
1935 2016 0.250252 TGTCATGCCTTCTGCGTTCA 60.250 50.000 0.00 0.00 45.60 3.18
1936 2017 1.089920 ATGTCATGCCTTCTGCGTTC 58.910 50.000 0.00 0.00 45.60 3.95
1937 2018 0.806868 CATGTCATGCCTTCTGCGTT 59.193 50.000 0.00 0.00 45.60 4.84
1938 2019 1.028330 CCATGTCATGCCTTCTGCGT 61.028 55.000 7.35 0.00 45.60 5.24
1939 2020 1.725665 CCATGTCATGCCTTCTGCG 59.274 57.895 7.35 0.00 45.60 5.18
1940 2021 1.317431 TGCCATGTCATGCCTTCTGC 61.317 55.000 7.35 5.07 41.77 4.26
1941 2022 1.135199 GTTGCCATGTCATGCCTTCTG 60.135 52.381 7.35 0.00 0.00 3.02
1942 2023 1.180029 GTTGCCATGTCATGCCTTCT 58.820 50.000 7.35 0.00 0.00 2.85
1943 2024 0.174162 GGTTGCCATGTCATGCCTTC 59.826 55.000 7.35 0.00 0.00 3.46
1944 2025 1.597797 CGGTTGCCATGTCATGCCTT 61.598 55.000 7.35 0.00 0.00 4.35
1945 2026 2.048023 CGGTTGCCATGTCATGCCT 61.048 57.895 7.35 0.00 0.00 4.75
1946 2027 2.491152 CGGTTGCCATGTCATGCC 59.509 61.111 7.35 0.00 0.00 4.40
1947 2028 1.996786 CTCCGGTTGCCATGTCATGC 61.997 60.000 7.35 4.05 0.00 4.06
1948 2029 1.996786 GCTCCGGTTGCCATGTCATG 61.997 60.000 5.79 5.79 0.00 3.07
1949 2030 1.750399 GCTCCGGTTGCCATGTCAT 60.750 57.895 0.00 0.00 0.00 3.06
1950 2031 2.359850 GCTCCGGTTGCCATGTCA 60.360 61.111 0.00 0.00 0.00 3.58
1951 2032 2.359850 TGCTCCGGTTGCCATGTC 60.360 61.111 16.82 0.00 0.00 3.06
1952 2033 2.360350 CTGCTCCGGTTGCCATGT 60.360 61.111 16.82 0.00 0.00 3.21
1953 2034 2.046023 TCTGCTCCGGTTGCCATG 60.046 61.111 16.82 9.15 0.00 3.66
1954 2035 2.270205 CTCTGCTCCGGTTGCCAT 59.730 61.111 16.82 0.00 0.00 4.40
1955 2036 4.020617 CCTCTGCTCCGGTTGCCA 62.021 66.667 16.82 5.58 0.00 4.92
1956 2037 4.785453 CCCTCTGCTCCGGTTGCC 62.785 72.222 16.82 0.00 0.00 4.52
1957 2038 3.706373 TCCCTCTGCTCCGGTTGC 61.706 66.667 13.68 13.68 0.00 4.17
1958 2039 2.266055 GTCCCTCTGCTCCGGTTG 59.734 66.667 0.00 0.00 0.00 3.77
1959 2040 2.203788 TGTCCCTCTGCTCCGGTT 60.204 61.111 0.00 0.00 0.00 4.44
1960 2041 2.997897 GTGTCCCTCTGCTCCGGT 60.998 66.667 0.00 0.00 0.00 5.28
1961 2042 4.135153 CGTGTCCCTCTGCTCCGG 62.135 72.222 0.00 0.00 0.00 5.14
1962 2043 4.135153 CCGTGTCCCTCTGCTCCG 62.135 72.222 0.00 0.00 0.00 4.63
1963 2044 3.775654 CCCGTGTCCCTCTGCTCC 61.776 72.222 0.00 0.00 0.00 4.70
1964 2045 2.060980 ATCCCGTGTCCCTCTGCTC 61.061 63.158 0.00 0.00 0.00 4.26
1965 2046 2.039624 ATCCCGTGTCCCTCTGCT 59.960 61.111 0.00 0.00 0.00 4.24
1966 2047 2.187946 CATCCCGTGTCCCTCTGC 59.812 66.667 0.00 0.00 0.00 4.26
1967 2048 2.187946 GCATCCCGTGTCCCTCTG 59.812 66.667 0.00 0.00 0.00 3.35
1968 2049 2.039624 AGCATCCCGTGTCCCTCT 59.960 61.111 0.00 0.00 0.00 3.69
1969 2050 2.303549 CTGAGCATCCCGTGTCCCTC 62.304 65.000 0.00 0.00 0.00 4.30
1970 2051 2.284625 TGAGCATCCCGTGTCCCT 60.285 61.111 0.00 0.00 0.00 4.20
1971 2052 2.187946 CTGAGCATCCCGTGTCCC 59.812 66.667 0.00 0.00 0.00 4.46
1972 2053 2.512515 GCTGAGCATCCCGTGTCC 60.513 66.667 0.00 0.00 0.00 4.02
1973 2054 2.512515 GGCTGAGCATCCCGTGTC 60.513 66.667 6.82 0.00 0.00 3.67
1974 2055 4.101448 GGGCTGAGCATCCCGTGT 62.101 66.667 6.82 0.00 32.00 4.49
1975 2056 3.626996 TTGGGCTGAGCATCCCGTG 62.627 63.158 6.82 0.00 45.60 4.94
1976 2057 2.905996 TTTGGGCTGAGCATCCCGT 61.906 57.895 6.82 0.00 45.60 5.28
1977 2058 2.045045 TTTGGGCTGAGCATCCCG 60.045 61.111 6.82 0.00 45.60 5.14
1978 2059 1.304381 TGTTTGGGCTGAGCATCCC 60.304 57.895 6.82 2.45 42.93 3.85
1979 2060 1.885871 GTGTTTGGGCTGAGCATCC 59.114 57.895 6.82 0.00 0.00 3.51
1980 2061 1.503542 CGTGTTTGGGCTGAGCATC 59.496 57.895 6.82 0.00 0.00 3.91
1981 2062 1.973281 CCGTGTTTGGGCTGAGCAT 60.973 57.895 6.82 0.00 0.00 3.79
1982 2063 2.594303 CCGTGTTTGGGCTGAGCA 60.594 61.111 6.82 0.00 0.00 4.26
1989 2070 0.515564 CGAGTTTAGCCGTGTTTGGG 59.484 55.000 0.00 0.00 0.00 4.12
1990 2071 0.110373 GCGAGTTTAGCCGTGTTTGG 60.110 55.000 0.00 0.00 0.00 3.28
1991 2072 0.110373 GGCGAGTTTAGCCGTGTTTG 60.110 55.000 0.00 0.00 45.58 2.93
1992 2073 2.241171 GGCGAGTTTAGCCGTGTTT 58.759 52.632 0.00 0.00 45.58 2.83
1993 2074 3.961729 GGCGAGTTTAGCCGTGTT 58.038 55.556 0.00 0.00 45.58 3.32
1999 2080 1.305930 CCCAGGTTGGCGAGTTTAGC 61.306 60.000 0.00 0.00 35.79 3.09
2000 2081 0.323629 TCCCAGGTTGGCGAGTTTAG 59.676 55.000 0.00 0.00 35.79 1.85
2001 2082 0.035739 GTCCCAGGTTGGCGAGTTTA 59.964 55.000 0.00 0.00 35.79 2.01
2002 2083 1.228154 GTCCCAGGTTGGCGAGTTT 60.228 57.895 0.00 0.00 35.79 2.66
2003 2084 2.430367 GTCCCAGGTTGGCGAGTT 59.570 61.111 0.00 0.00 35.79 3.01
2004 2085 4.003788 CGTCCCAGGTTGGCGAGT 62.004 66.667 0.00 0.00 35.79 4.18
2018 2099 2.975799 TTTGGTTCGGGCTGCGTC 60.976 61.111 0.00 0.00 0.00 5.19
2019 2100 3.284449 GTTTGGTTCGGGCTGCGT 61.284 61.111 0.00 0.00 0.00 5.24
2020 2101 4.038080 GGTTTGGTTCGGGCTGCG 62.038 66.667 0.00 0.00 0.00 5.18
2021 2102 2.212900 GATGGTTTGGTTCGGGCTGC 62.213 60.000 0.00 0.00 0.00 5.25
2022 2103 0.893270 TGATGGTTTGGTTCGGGCTG 60.893 55.000 0.00 0.00 0.00 4.85
2023 2104 0.039618 ATGATGGTTTGGTTCGGGCT 59.960 50.000 0.00 0.00 0.00 5.19
2024 2105 0.173255 CATGATGGTTTGGTTCGGGC 59.827 55.000 0.00 0.00 0.00 6.13
2025 2106 1.472480 GTCATGATGGTTTGGTTCGGG 59.528 52.381 0.00 0.00 0.00 5.14
2026 2107 2.158559 TGTCATGATGGTTTGGTTCGG 58.841 47.619 0.00 0.00 0.00 4.30
2027 2108 3.564511 GTTGTCATGATGGTTTGGTTCG 58.435 45.455 0.00 0.00 0.00 3.95
2028 2109 3.320541 TGGTTGTCATGATGGTTTGGTTC 59.679 43.478 0.00 0.00 0.00 3.62
2029 2110 3.069443 GTGGTTGTCATGATGGTTTGGTT 59.931 43.478 0.00 0.00 0.00 3.67
2030 2111 2.627699 GTGGTTGTCATGATGGTTTGGT 59.372 45.455 0.00 0.00 0.00 3.67
2031 2112 2.029110 GGTGGTTGTCATGATGGTTTGG 60.029 50.000 0.00 0.00 0.00 3.28
2032 2113 2.627221 TGGTGGTTGTCATGATGGTTTG 59.373 45.455 0.00 0.00 0.00 2.93
2033 2114 2.892852 CTGGTGGTTGTCATGATGGTTT 59.107 45.455 0.00 0.00 0.00 3.27
2034 2115 2.517959 CTGGTGGTTGTCATGATGGTT 58.482 47.619 0.00 0.00 0.00 3.67
2035 2116 1.887956 GCTGGTGGTTGTCATGATGGT 60.888 52.381 0.00 0.00 0.00 3.55
2036 2117 0.813184 GCTGGTGGTTGTCATGATGG 59.187 55.000 0.00 0.00 0.00 3.51
2037 2118 1.830279 AGCTGGTGGTTGTCATGATG 58.170 50.000 0.00 0.00 0.00 3.07
2038 2119 2.559668 CAAAGCTGGTGGTTGTCATGAT 59.440 45.455 0.00 0.00 33.79 2.45
2039 2120 1.955778 CAAAGCTGGTGGTTGTCATGA 59.044 47.619 0.00 0.00 33.79 3.07
2040 2121 1.000060 CCAAAGCTGGTGGTTGTCATG 60.000 52.381 8.30 0.00 38.00 3.07
2041 2122 1.331214 CCAAAGCTGGTGGTTGTCAT 58.669 50.000 8.30 0.00 38.00 3.06
2042 2123 2.805897 CCAAAGCTGGTGGTTGTCA 58.194 52.632 8.30 0.00 38.00 3.58
2063 2144 5.036916 TCCTGGTCCTGTCTAATTAATGGT 58.963 41.667 0.00 0.00 0.00 3.55
2064 2145 5.131142 AGTCCTGGTCCTGTCTAATTAATGG 59.869 44.000 0.00 0.00 0.00 3.16
2067 2148 4.715297 GGAGTCCTGGTCCTGTCTAATTAA 59.285 45.833 0.41 0.00 0.00 1.40
2068 2149 4.264668 TGGAGTCCTGGTCCTGTCTAATTA 60.265 45.833 11.33 0.00 34.86 1.40
2069 2150 3.108376 GGAGTCCTGGTCCTGTCTAATT 58.892 50.000 0.41 0.00 0.00 1.40
2070 2151 2.044492 TGGAGTCCTGGTCCTGTCTAAT 59.956 50.000 11.33 0.00 34.86 1.73
2071 2152 1.431633 TGGAGTCCTGGTCCTGTCTAA 59.568 52.381 11.33 0.00 34.86 2.10
2072 2153 1.006043 CTGGAGTCCTGGTCCTGTCTA 59.994 57.143 11.33 0.00 34.86 2.59
2074 2155 1.261238 CCTGGAGTCCTGGTCCTGTC 61.261 65.000 23.72 0.00 37.76 3.51
2076 2157 0.975040 CTCCTGGAGTCCTGGTCCTG 60.975 65.000 28.78 16.38 42.31 3.86
2077 2158 1.390125 CTCCTGGAGTCCTGGTCCT 59.610 63.158 28.78 0.00 42.31 3.85
2078 2159 1.687493 CCTCCTGGAGTCCTGGTCC 60.687 68.421 28.78 0.00 42.31 4.46
2079 2160 1.388531 TCCTCCTGGAGTCCTGGTC 59.611 63.158 28.78 0.00 42.31 4.02
2080 2161 3.620903 TCCTCCTGGAGTCCTGGT 58.379 61.111 28.78 0.00 42.31 4.00
2088 2169 1.686428 CGTCTCCATTCTCCTCCTGGA 60.686 57.143 0.00 0.00 40.69 3.86
2089 2170 0.749649 CGTCTCCATTCTCCTCCTGG 59.250 60.000 0.00 0.00 0.00 4.45
2090 2171 1.769026 TCGTCTCCATTCTCCTCCTG 58.231 55.000 0.00 0.00 0.00 3.86
2091 2172 2.315176 CATCGTCTCCATTCTCCTCCT 58.685 52.381 0.00 0.00 0.00 3.69
2092 2173 1.342819 CCATCGTCTCCATTCTCCTCC 59.657 57.143 0.00 0.00 0.00 4.30
2093 2174 2.035632 ACCATCGTCTCCATTCTCCTC 58.964 52.381 0.00 0.00 0.00 3.71
2094 2175 1.759445 CACCATCGTCTCCATTCTCCT 59.241 52.381 0.00 0.00 0.00 3.69
2095 2176 1.202580 CCACCATCGTCTCCATTCTCC 60.203 57.143 0.00 0.00 0.00 3.71
2096 2177 1.808133 GCCACCATCGTCTCCATTCTC 60.808 57.143 0.00 0.00 0.00 2.87
2097 2178 0.179000 GCCACCATCGTCTCCATTCT 59.821 55.000 0.00 0.00 0.00 2.40
2098 2179 0.815615 GGCCACCATCGTCTCCATTC 60.816 60.000 0.00 0.00 0.00 2.67
2099 2180 1.224592 GGCCACCATCGTCTCCATT 59.775 57.895 0.00 0.00 0.00 3.16
2100 2181 2.746375 GGGCCACCATCGTCTCCAT 61.746 63.158 4.39 0.00 36.50 3.41
2101 2182 3.399181 GGGCCACCATCGTCTCCA 61.399 66.667 4.39 0.00 36.50 3.86
2156 2237 6.292328 CGTACAGTACGTGTTAATCCTCGATA 60.292 42.308 22.70 0.00 46.41 2.92
2193 2274 4.813161 TGTAGATGCTCCTACGTACAGTAC 59.187 45.833 0.00 0.00 41.34 2.73
2194 2275 4.813161 GTGTAGATGCTCCTACGTACAGTA 59.187 45.833 0.00 0.00 41.34 2.74
2196 2277 3.003482 GGTGTAGATGCTCCTACGTACAG 59.997 52.174 0.00 0.00 41.34 2.74
2197 2278 2.947652 GGTGTAGATGCTCCTACGTACA 59.052 50.000 0.00 0.00 41.34 2.90
2199 2280 3.286329 TGGTGTAGATGCTCCTACGTA 57.714 47.619 0.00 0.00 41.34 3.57
2201 2282 3.520290 TTTGGTGTAGATGCTCCTACG 57.480 47.619 10.13 0.00 41.34 3.51
2202 2283 5.880332 TCAAATTTGGTGTAGATGCTCCTAC 59.120 40.000 17.90 8.51 39.46 3.18
2203 2284 5.880332 GTCAAATTTGGTGTAGATGCTCCTA 59.120 40.000 17.90 0.00 0.00 2.94
2204 2285 4.702131 GTCAAATTTGGTGTAGATGCTCCT 59.298 41.667 17.90 0.00 0.00 3.69
2205 2286 4.142381 GGTCAAATTTGGTGTAGATGCTCC 60.142 45.833 17.90 1.54 0.00 4.70
2206 2287 4.142381 GGGTCAAATTTGGTGTAGATGCTC 60.142 45.833 17.90 0.00 0.00 4.26
2207 2288 3.763897 GGGTCAAATTTGGTGTAGATGCT 59.236 43.478 17.90 0.00 0.00 3.79
2208 2289 3.119137 GGGGTCAAATTTGGTGTAGATGC 60.119 47.826 17.90 0.00 0.00 3.91
2209 2290 4.344104 AGGGGTCAAATTTGGTGTAGATG 58.656 43.478 17.90 0.00 0.00 2.90
2210 2291 4.044065 TGAGGGGTCAAATTTGGTGTAGAT 59.956 41.667 17.90 0.00 0.00 1.98
2211 2292 3.396276 TGAGGGGTCAAATTTGGTGTAGA 59.604 43.478 17.90 0.00 0.00 2.59
2212 2293 3.761897 TGAGGGGTCAAATTTGGTGTAG 58.238 45.455 17.90 0.00 0.00 2.74
2223 2304 2.445145 TCCACAGAATTTGAGGGGTCAA 59.555 45.455 0.00 0.00 38.03 3.18
2236 2317 2.226200 CGTTTGCATCATGTCCACAGAA 59.774 45.455 0.00 0.00 0.00 3.02
2237 2318 1.805943 CGTTTGCATCATGTCCACAGA 59.194 47.619 0.00 0.00 0.00 3.41
2244 2326 0.590682 TGAACGCGTTTGCATCATGT 59.409 45.000 27.32 0.00 42.97 3.21
2247 2329 1.083080 CGTGAACGCGTTTGCATCA 60.083 52.632 27.32 16.40 42.97 3.07
2249 2331 2.170260 CTCCGTGAACGCGTTTGCAT 62.170 55.000 27.32 2.07 42.97 3.96
2251 2333 2.127758 CTCCGTGAACGCGTTTGC 60.128 61.111 27.32 19.57 38.18 3.68
2253 2335 1.066918 ACTCTCCGTGAACGCGTTT 59.933 52.632 27.32 9.95 38.18 3.60
2255 2337 2.050351 CACTCTCCGTGAACGCGT 60.050 61.111 5.58 5.58 46.81 6.01
2263 2345 1.546476 GTCTGACCAATCACTCTCCGT 59.454 52.381 0.00 0.00 0.00 4.69
2268 2350 3.685139 TTGAGGTCTGACCAATCACTC 57.315 47.619 27.48 15.59 41.95 3.51
2274 2356 5.304686 ACAATAGTTTGAGGTCTGACCAA 57.695 39.130 27.48 13.33 37.20 3.67
2275 2357 4.974645 ACAATAGTTTGAGGTCTGACCA 57.025 40.909 27.48 6.18 37.20 4.02
2290 2372 3.848272 ATGCGGTTGTGGAAACAATAG 57.152 42.857 0.00 0.00 46.06 1.73
2294 2376 1.202830 AGGTATGCGGTTGTGGAAACA 60.203 47.619 0.00 0.00 38.70 2.83
2307 2389 6.844696 TGAGAATTCGTAATTGAGGTATGC 57.155 37.500 0.00 0.00 0.00 3.14
2308 2390 9.869844 GATTTGAGAATTCGTAATTGAGGTATG 57.130 33.333 0.00 0.00 0.00 2.39
2343 2425 3.829886 ATTAGGTTTCACGTGCATGTG 57.170 42.857 29.46 29.46 41.28 3.21
2364 2446 2.614983 AGCCGAACAAGTTTCGCTTAAA 59.385 40.909 0.84 0.00 40.30 1.52
2392 2474 1.065928 CAGCCGTCGGACATAGACC 59.934 63.158 17.49 0.00 35.33 3.85
2396 2478 1.216977 CAACCAGCCGTCGGACATA 59.783 57.895 17.49 0.00 0.00 2.29
2412 2495 1.039068 CAATATTCCATGGGGCGCAA 58.961 50.000 13.02 0.00 0.00 4.85
2421 2504 0.106268 TGCCCGCACCAATATTCCAT 60.106 50.000 0.00 0.00 0.00 3.41
2422 2505 1.034838 GTGCCCGCACCAATATTCCA 61.035 55.000 8.68 0.00 40.79 3.53
2426 2509 0.748005 GACTGTGCCCGCACCAATAT 60.748 55.000 16.77 0.00 45.63 1.28
2438 2521 1.671845 CCTACTCTACCTCGACTGTGC 59.328 57.143 0.00 0.00 0.00 4.57
2440 2523 3.996921 TTCCTACTCTACCTCGACTGT 57.003 47.619 0.00 0.00 0.00 3.55
2441 2524 4.036971 CCATTTCCTACTCTACCTCGACTG 59.963 50.000 0.00 0.00 0.00 3.51
2442 2525 4.208746 CCATTTCCTACTCTACCTCGACT 58.791 47.826 0.00 0.00 0.00 4.18
2444 2527 3.203710 TCCCATTTCCTACTCTACCTCGA 59.796 47.826 0.00 0.00 0.00 4.04
2460 2543 0.250901 GAGCTGGTGTGTGTCCCATT 60.251 55.000 0.00 0.00 0.00 3.16
2476 2559 1.444553 CGTCTTGAGTCCCGTGAGC 60.445 63.158 0.00 0.00 0.00 4.26
2500 2583 1.414550 GAAGAGTAGGGCATGGGAGAC 59.585 57.143 0.00 0.00 0.00 3.36
2511 2594 1.673920 GCTCAGACGAGGAAGAGTAGG 59.326 57.143 0.00 0.00 39.88 3.18
2524 2607 2.279502 TACATGCGACGGGCTCAGAC 62.280 60.000 0.00 0.00 44.05 3.51
2526 2609 1.878522 GTACATGCGACGGGCTCAG 60.879 63.158 0.00 0.00 44.05 3.35
2527 2610 2.183300 GTACATGCGACGGGCTCA 59.817 61.111 0.00 0.00 44.05 4.26
2537 2620 1.011968 TCAACCAGCGACGTACATGC 61.012 55.000 0.00 0.00 0.00 4.06
2539 2622 1.067142 ACATCAACCAGCGACGTACAT 60.067 47.619 0.00 0.00 0.00 2.29
2542 2625 0.599060 TCACATCAACCAGCGACGTA 59.401 50.000 0.00 0.00 0.00 3.57
2549 2632 3.678289 TCATTGACCTCACATCAACCAG 58.322 45.455 0.00 0.00 38.84 4.00
2550 2633 3.786368 TCATTGACCTCACATCAACCA 57.214 42.857 0.00 0.00 38.84 3.67
2553 2636 4.573021 TCCATCATTGACCTCACATCAA 57.427 40.909 0.00 0.00 40.25 2.57
2554 2637 4.783560 ATCCATCATTGACCTCACATCA 57.216 40.909 0.00 0.00 0.00 3.07
2563 2646 2.285220 CCACGACGAATCCATCATTGAC 59.715 50.000 0.00 0.00 0.00 3.18
2566 2649 2.093711 TGACCACGACGAATCCATCATT 60.094 45.455 0.00 0.00 0.00 2.57
2576 2659 0.820482 TTGACCTCTGACCACGACGA 60.820 55.000 0.00 0.00 0.00 4.20
2578 2661 0.387929 TGTTGACCTCTGACCACGAC 59.612 55.000 0.00 0.00 0.00 4.34
2592 2675 0.697658 TGTCCTCATGGGCATGTTGA 59.302 50.000 0.00 0.00 44.07 3.18
2604 2687 4.980805 GCCGCAACCGTGTCCTCA 62.981 66.667 0.00 0.00 0.00 3.86
2613 2696 3.457903 AAACACGAACGCCGCAACC 62.458 57.895 0.00 0.00 43.32 3.77
2614 2697 2.023601 AAACACGAACGCCGCAAC 59.976 55.556 0.00 0.00 43.32 4.17
2615 2698 2.023461 CAAACACGAACGCCGCAA 59.977 55.556 0.00 0.00 43.32 4.85
2629 2712 1.377987 GATACAGGTGGCCGGCAAA 60.378 57.895 30.85 13.68 0.00 3.68
2653 2736 2.179517 GGTGGAGTCGCACTCTCG 59.820 66.667 13.59 0.00 44.46 4.04


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.