Multiple sequence alignment - TraesCS4D01G089200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G089200 chr4D 100.000 4076 0 0 1 4076 64618399 64614324 0.000000e+00 7528.0
1 TraesCS4D01G089200 chr4D 80.586 1535 194 49 1856 3317 64605202 64603699 0.000000e+00 1088.0
2 TraesCS4D01G089200 chr4D 81.117 895 129 21 989 1847 64606182 64605292 0.000000e+00 680.0
3 TraesCS4D01G089200 chr4A 94.469 3218 111 13 892 4076 531311687 531314870 0.000000e+00 4894.0
4 TraesCS4D01G089200 chr4A 82.454 1858 228 51 1531 3316 531247715 531249546 0.000000e+00 1535.0
5 TraesCS4D01G089200 chr4A 79.734 2033 296 56 1248 3189 531326125 531328132 0.000000e+00 1365.0
6 TraesCS4D01G089200 chr4A 78.439 807 124 30 727 1486 531246799 531247602 7.920000e-132 481.0
7 TraesCS4D01G089200 chr4A 82.197 264 41 6 920 1180 531325845 531326105 5.300000e-54 222.0
8 TraesCS4D01G089200 chr4B 92.610 1935 106 15 892 2790 95218795 95216862 0.000000e+00 2747.0
9 TraesCS4D01G089200 chr4B 83.069 1831 210 53 1539 3298 95366125 95367926 0.000000e+00 1572.0
10 TraesCS4D01G089200 chr4B 80.288 1598 215 58 989 2502 95109498 95107917 0.000000e+00 1114.0
11 TraesCS4D01G089200 chr4B 82.733 1193 132 39 1537 2666 95318127 95316946 0.000000e+00 994.0
12 TraesCS4D01G089200 chr4B 90.669 643 50 2 3434 4076 95204628 95203996 0.000000e+00 846.0
13 TraesCS4D01G089200 chr4B 89.845 581 33 2 2880 3436 95216859 95216281 0.000000e+00 723.0
14 TraesCS4D01G089200 chr4B 78.635 894 125 39 648 1486 95319126 95318244 2.160000e-147 532.0
15 TraesCS4D01G089200 chr4B 78.387 893 128 33 649 1486 95365122 95366004 1.680000e-143 520.0
16 TraesCS4D01G089200 chr4B 76.852 324 49 13 2525 2840 95107800 95107495 4.220000e-35 159.0
17 TraesCS4D01G089200 chr4B 78.696 230 30 11 626 848 95109802 95109585 7.110000e-28 135.0
18 TraesCS4D01G089200 chr6D 100.000 31 0 0 3508 3538 79166718 79166688 1.580000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G089200 chr4D 64614324 64618399 4075 True 7528.000000 7528 100.0000 1 4076 1 chr4D.!!$R1 4075
1 TraesCS4D01G089200 chr4D 64603699 64606182 2483 True 884.000000 1088 80.8515 989 3317 2 chr4D.!!$R2 2328
2 TraesCS4D01G089200 chr4A 531311687 531314870 3183 False 4894.000000 4894 94.4690 892 4076 1 chr4A.!!$F1 3184
3 TraesCS4D01G089200 chr4A 531246799 531249546 2747 False 1008.000000 1535 80.4465 727 3316 2 chr4A.!!$F2 2589
4 TraesCS4D01G089200 chr4A 531325845 531328132 2287 False 793.500000 1365 80.9655 920 3189 2 chr4A.!!$F3 2269
5 TraesCS4D01G089200 chr4B 95216281 95218795 2514 True 1735.000000 2747 91.2275 892 3436 2 chr4B.!!$R3 2544
6 TraesCS4D01G089200 chr4B 95365122 95367926 2804 False 1046.000000 1572 80.7280 649 3298 2 chr4B.!!$F1 2649
7 TraesCS4D01G089200 chr4B 95203996 95204628 632 True 846.000000 846 90.6690 3434 4076 1 chr4B.!!$R1 642
8 TraesCS4D01G089200 chr4B 95316946 95319126 2180 True 763.000000 994 80.6840 648 2666 2 chr4B.!!$R4 2018
9 TraesCS4D01G089200 chr4B 95107495 95109802 2307 True 469.333333 1114 78.6120 626 2840 3 chr4B.!!$R2 2214

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
446 447 0.033504 GAGGCGAGTCAAACTGGTGA 59.966 55.0 0.00 0.0 0.00 4.02 F
687 689 0.107508 ATCCACATCTCGCTGGGTTG 60.108 55.0 0.00 0.0 0.00 3.77 F
758 762 0.323725 GAAGCCTCAGCCCCATTTCA 60.324 55.0 0.00 0.0 41.25 2.69 F
2310 2645 0.596082 GAGAGGCTCGGTAGATGCTC 59.404 60.0 9.22 0.0 0.00 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2310 2645 7.329226 CAGTTAATTTTCATACCAGGTTTGCAG 59.671 37.037 0.00 0.0 0.00 4.41 R
2644 3131 0.589223 CCGTTGCGAAAAACTAGCCA 59.411 50.000 0.00 0.0 0.00 4.75 R
2657 3144 7.130269 GGTGAATGTATTTTACTATCCGTTGC 58.870 38.462 0.00 0.0 0.00 4.17 R
4056 4595 0.463654 AAACCACTCAGTGAGCGCAA 60.464 50.000 20.31 0.0 35.23 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.301072 AATCCCCGAGTTTTCTTCATGA 57.699 40.909 0.00 0.00 0.00 3.07
23 24 3.780804 TCCCCGAGTTTTCTTCATGAA 57.219 42.857 8.12 8.12 0.00 2.57
24 25 4.301072 TCCCCGAGTTTTCTTCATGAAT 57.699 40.909 8.96 0.00 34.24 2.57
25 26 4.662278 TCCCCGAGTTTTCTTCATGAATT 58.338 39.130 8.96 0.00 34.24 2.17
26 27 5.811190 TCCCCGAGTTTTCTTCATGAATTA 58.189 37.500 8.96 0.00 34.24 1.40
27 28 6.242396 TCCCCGAGTTTTCTTCATGAATTAA 58.758 36.000 8.96 3.99 34.24 1.40
28 29 6.717540 TCCCCGAGTTTTCTTCATGAATTAAA 59.282 34.615 8.96 9.92 34.24 1.52
29 30 7.231722 TCCCCGAGTTTTCTTCATGAATTAAAA 59.768 33.333 18.07 18.07 34.24 1.52
30 31 7.870445 CCCCGAGTTTTCTTCATGAATTAAAAA 59.130 33.333 21.30 17.96 34.24 1.94
191 192 9.838975 AATGTTCAAAAATTCACAAAAAGGTTC 57.161 25.926 0.00 0.00 0.00 3.62
192 193 7.513968 TGTTCAAAAATTCACAAAAAGGTTCG 58.486 30.769 0.00 0.00 0.00 3.95
193 194 7.171678 TGTTCAAAAATTCACAAAAAGGTTCGT 59.828 29.630 0.00 0.00 0.00 3.85
194 195 7.054855 TCAAAAATTCACAAAAAGGTTCGTG 57.945 32.000 0.00 0.00 0.00 4.35
195 196 6.868864 TCAAAAATTCACAAAAAGGTTCGTGA 59.131 30.769 0.00 0.00 36.63 4.35
200 201 6.639671 TTCACAAAAAGGTTCGTGAATTTG 57.360 33.333 0.00 5.35 41.97 2.32
201 202 5.715070 TCACAAAAAGGTTCGTGAATTTGT 58.285 33.333 6.33 6.33 40.49 2.83
202 203 6.853720 TCACAAAAAGGTTCGTGAATTTGTA 58.146 32.000 10.16 1.21 38.52 2.41
203 204 7.313646 TCACAAAAAGGTTCGTGAATTTGTAA 58.686 30.769 10.16 0.00 38.52 2.41
204 205 7.813148 TCACAAAAAGGTTCGTGAATTTGTAAA 59.187 29.630 10.16 2.73 38.52 2.01
205 206 8.436200 CACAAAAAGGTTCGTGAATTTGTAAAA 58.564 29.630 10.16 0.00 38.52 1.52
206 207 9.157104 ACAAAAAGGTTCGTGAATTTGTAAAAT 57.843 25.926 9.22 0.00 38.72 1.82
207 208 9.419737 CAAAAAGGTTCGTGAATTTGTAAAATG 57.580 29.630 0.00 0.00 0.00 2.32
208 209 8.710835 AAAAGGTTCGTGAATTTGTAAAATGT 57.289 26.923 0.00 0.00 0.00 2.71
209 210 9.804758 AAAAGGTTCGTGAATTTGTAAAATGTA 57.195 25.926 0.00 0.00 0.00 2.29
210 211 8.791355 AAGGTTCGTGAATTTGTAAAATGTAC 57.209 30.769 0.00 0.00 0.00 2.90
211 212 7.932335 AGGTTCGTGAATTTGTAAAATGTACA 58.068 30.769 0.00 0.00 0.00 2.90
212 213 8.073768 AGGTTCGTGAATTTGTAAAATGTACAG 58.926 33.333 0.33 0.00 0.00 2.74
213 214 7.325097 GGTTCGTGAATTTGTAAAATGTACAGG 59.675 37.037 0.33 0.00 0.00 4.00
214 215 7.731882 TCGTGAATTTGTAAAATGTACAGGA 57.268 32.000 0.33 0.00 0.00 3.86
215 216 8.330466 TCGTGAATTTGTAAAATGTACAGGAT 57.670 30.769 0.33 0.00 0.00 3.24
216 217 8.788806 TCGTGAATTTGTAAAATGTACAGGATT 58.211 29.630 0.33 0.00 0.00 3.01
217 218 9.405587 CGTGAATTTGTAAAATGTACAGGATTT 57.594 29.630 0.33 5.60 0.00 2.17
228 229 9.612066 AAAATGTACAGGATTTCAAACAAATGT 57.388 25.926 0.33 0.00 0.00 2.71
229 230 9.612066 AAATGTACAGGATTTCAAACAAATGTT 57.388 25.926 0.33 0.00 40.50 2.71
230 231 8.592105 ATGTACAGGATTTCAAACAAATGTTG 57.408 30.769 0.33 0.00 38.44 3.33
231 232 6.983307 TGTACAGGATTTCAAACAAATGTTGG 59.017 34.615 0.00 0.00 38.44 3.77
232 233 5.988287 ACAGGATTTCAAACAAATGTTGGT 58.012 33.333 0.00 0.00 38.44 3.67
233 234 5.816777 ACAGGATTTCAAACAAATGTTGGTG 59.183 36.000 0.00 0.00 38.44 4.17
234 235 6.047870 CAGGATTTCAAACAAATGTTGGTGA 58.952 36.000 0.00 0.00 38.44 4.02
235 236 6.538021 CAGGATTTCAAACAAATGTTGGTGAA 59.462 34.615 8.57 8.57 38.44 3.18
236 237 7.065563 CAGGATTTCAAACAAATGTTGGTGAAA 59.934 33.333 20.05 20.05 44.95 2.69
239 240 6.917217 TTCAAACAAATGTTGGTGAAATCC 57.083 33.333 9.73 0.00 38.44 3.01
240 241 5.046529 TCAAACAAATGTTGGTGAAATCCG 58.953 37.500 0.00 0.00 38.44 4.18
241 242 4.927978 AACAAATGTTGGTGAAATCCGA 57.072 36.364 0.00 0.00 36.80 4.55
242 243 4.927978 ACAAATGTTGGTGAAATCCGAA 57.072 36.364 0.00 0.00 34.12 4.30
243 244 5.269505 ACAAATGTTGGTGAAATCCGAAA 57.730 34.783 0.00 0.00 34.12 3.46
244 245 5.047188 ACAAATGTTGGTGAAATCCGAAAC 58.953 37.500 0.00 0.00 34.12 2.78
245 246 5.163457 ACAAATGTTGGTGAAATCCGAAACT 60.163 36.000 0.00 0.00 34.12 2.66
246 247 6.039941 ACAAATGTTGGTGAAATCCGAAACTA 59.960 34.615 0.00 0.00 34.12 2.24
247 248 6.834168 AATGTTGGTGAAATCCGAAACTAT 57.166 33.333 0.00 0.00 0.00 2.12
248 249 6.834168 ATGTTGGTGAAATCCGAAACTATT 57.166 33.333 0.00 0.00 0.00 1.73
249 250 6.249035 TGTTGGTGAAATCCGAAACTATTC 57.751 37.500 0.00 0.00 0.00 1.75
250 251 5.765677 TGTTGGTGAAATCCGAAACTATTCA 59.234 36.000 0.00 0.00 35.15 2.57
251 252 6.432783 TGTTGGTGAAATCCGAAACTATTCAT 59.567 34.615 0.00 0.00 35.15 2.57
252 253 6.435430 TGGTGAAATCCGAAACTATTCATG 57.565 37.500 0.00 0.00 35.15 3.07
253 254 6.176896 TGGTGAAATCCGAAACTATTCATGA 58.823 36.000 0.00 0.00 35.15 3.07
254 255 6.828273 TGGTGAAATCCGAAACTATTCATGAT 59.172 34.615 0.00 0.00 35.15 2.45
255 256 7.339212 TGGTGAAATCCGAAACTATTCATGATT 59.661 33.333 0.00 0.00 37.86 2.57
256 257 8.190784 GGTGAAATCCGAAACTATTCATGATTT 58.809 33.333 0.00 12.21 42.88 2.17
259 260 9.787532 GAAATCCGAAACTATTCATGATTTCAA 57.212 29.630 22.55 7.01 46.86 2.69
309 310 7.660030 AAAAATCAGAAGGAAAAACAGAGGA 57.340 32.000 0.00 0.00 0.00 3.71
310 311 7.660030 AAAATCAGAAGGAAAAACAGAGGAA 57.340 32.000 0.00 0.00 0.00 3.36
311 312 7.660030 AAATCAGAAGGAAAAACAGAGGAAA 57.340 32.000 0.00 0.00 0.00 3.13
312 313 7.660030 AATCAGAAGGAAAAACAGAGGAAAA 57.340 32.000 0.00 0.00 0.00 2.29
313 314 6.699575 TCAGAAGGAAAAACAGAGGAAAAG 57.300 37.500 0.00 0.00 0.00 2.27
314 315 5.594317 TCAGAAGGAAAAACAGAGGAAAAGG 59.406 40.000 0.00 0.00 0.00 3.11
315 316 4.895889 AGAAGGAAAAACAGAGGAAAAGGG 59.104 41.667 0.00 0.00 0.00 3.95
316 317 4.536295 AGGAAAAACAGAGGAAAAGGGA 57.464 40.909 0.00 0.00 0.00 4.20
317 318 4.474394 AGGAAAAACAGAGGAAAAGGGAG 58.526 43.478 0.00 0.00 0.00 4.30
318 319 4.168088 AGGAAAAACAGAGGAAAAGGGAGA 59.832 41.667 0.00 0.00 0.00 3.71
319 320 4.893524 GGAAAAACAGAGGAAAAGGGAGAA 59.106 41.667 0.00 0.00 0.00 2.87
320 321 5.362717 GGAAAAACAGAGGAAAAGGGAGAAA 59.637 40.000 0.00 0.00 0.00 2.52
321 322 6.127168 GGAAAAACAGAGGAAAAGGGAGAAAA 60.127 38.462 0.00 0.00 0.00 2.29
322 323 5.854010 AAACAGAGGAAAAGGGAGAAAAC 57.146 39.130 0.00 0.00 0.00 2.43
323 324 4.797912 ACAGAGGAAAAGGGAGAAAACT 57.202 40.909 0.00 0.00 0.00 2.66
324 325 4.464947 ACAGAGGAAAAGGGAGAAAACTG 58.535 43.478 0.00 0.00 0.00 3.16
325 326 3.823304 CAGAGGAAAAGGGAGAAAACTGG 59.177 47.826 0.00 0.00 0.00 4.00
326 327 3.463704 AGAGGAAAAGGGAGAAAACTGGT 59.536 43.478 0.00 0.00 0.00 4.00
327 328 4.079154 AGAGGAAAAGGGAGAAAACTGGTT 60.079 41.667 0.00 0.00 0.00 3.67
328 329 4.215908 AGGAAAAGGGAGAAAACTGGTTC 58.784 43.478 0.00 0.00 0.00 3.62
329 330 3.958147 GGAAAAGGGAGAAAACTGGTTCA 59.042 43.478 0.00 0.00 0.00 3.18
330 331 4.588951 GGAAAAGGGAGAAAACTGGTTCAT 59.411 41.667 0.00 0.00 0.00 2.57
331 332 5.773176 GGAAAAGGGAGAAAACTGGTTCATA 59.227 40.000 0.00 0.00 0.00 2.15
332 333 6.266786 GGAAAAGGGAGAAAACTGGTTCATAA 59.733 38.462 0.00 0.00 0.00 1.90
333 334 7.201965 GGAAAAGGGAGAAAACTGGTTCATAAA 60.202 37.037 0.00 0.00 0.00 1.40
334 335 7.669089 AAAGGGAGAAAACTGGTTCATAAAA 57.331 32.000 0.00 0.00 0.00 1.52
335 336 6.901081 AGGGAGAAAACTGGTTCATAAAAG 57.099 37.500 0.00 0.00 0.00 2.27
336 337 6.610830 AGGGAGAAAACTGGTTCATAAAAGA 58.389 36.000 0.00 0.00 0.00 2.52
337 338 7.066781 AGGGAGAAAACTGGTTCATAAAAGAA 58.933 34.615 0.00 0.00 0.00 2.52
338 339 7.730332 AGGGAGAAAACTGGTTCATAAAAGAAT 59.270 33.333 0.00 0.00 0.00 2.40
339 340 8.029522 GGGAGAAAACTGGTTCATAAAAGAATC 58.970 37.037 0.00 0.00 0.00 2.52
340 341 8.576442 GGAGAAAACTGGTTCATAAAAGAATCA 58.424 33.333 0.00 0.00 36.34 2.57
341 342 9.965824 GAGAAAACTGGTTCATAAAAGAATCAA 57.034 29.630 0.00 0.00 38.10 2.57
342 343 9.971922 AGAAAACTGGTTCATAAAAGAATCAAG 57.028 29.630 0.00 0.00 38.10 3.02
343 344 9.965824 GAAAACTGGTTCATAAAAGAATCAAGA 57.034 29.630 0.00 0.00 38.10 3.02
347 348 9.525826 ACTGGTTCATAAAAGAATCAAGAATCT 57.474 29.630 0.00 0.00 38.10 2.40
350 351 9.794685 GGTTCATAAAAGAATCAAGAATCTTCC 57.205 33.333 1.19 0.00 34.90 3.46
351 352 9.794685 GTTCATAAAAGAATCAAGAATCTTCCC 57.205 33.333 1.19 0.00 34.90 3.97
352 353 9.532494 TTCATAAAAGAATCAAGAATCTTCCCA 57.468 29.630 1.19 0.00 34.90 4.37
353 354 9.532494 TCATAAAAGAATCAAGAATCTTCCCAA 57.468 29.630 1.19 0.00 34.90 4.12
357 358 8.893219 AAAGAATCAAGAATCTTCCCAAAAAC 57.107 30.769 1.19 0.00 34.90 2.43
358 359 6.681777 AGAATCAAGAATCTTCCCAAAAACG 58.318 36.000 0.00 0.00 0.00 3.60
359 360 6.490040 AGAATCAAGAATCTTCCCAAAAACGA 59.510 34.615 0.00 0.00 0.00 3.85
360 361 6.840780 ATCAAGAATCTTCCCAAAAACGAT 57.159 33.333 0.00 0.00 0.00 3.73
361 362 6.012658 TCAAGAATCTTCCCAAAAACGATG 57.987 37.500 0.00 0.00 0.00 3.84
362 363 5.048083 TCAAGAATCTTCCCAAAAACGATGG 60.048 40.000 0.00 0.00 37.71 3.51
371 372 3.649073 CCAAAAACGATGGGGAAGAAAC 58.351 45.455 0.00 0.00 34.15 2.78
372 373 3.554129 CCAAAAACGATGGGGAAGAAACC 60.554 47.826 0.00 0.00 34.15 3.27
380 381 2.882170 GGGAAGAAACCCGGAATGG 58.118 57.895 0.73 0.00 40.49 3.16
399 400 1.756430 GGCCATCCCAAGAAGAAGAC 58.244 55.000 0.00 0.00 0.00 3.01
400 401 1.683319 GGCCATCCCAAGAAGAAGACC 60.683 57.143 0.00 0.00 0.00 3.85
401 402 1.004745 GCCATCCCAAGAAGAAGACCA 59.995 52.381 0.00 0.00 0.00 4.02
402 403 2.357569 GCCATCCCAAGAAGAAGACCAT 60.358 50.000 0.00 0.00 0.00 3.55
403 404 3.285484 CCATCCCAAGAAGAAGACCATG 58.715 50.000 0.00 0.00 0.00 3.66
404 405 3.054139 CCATCCCAAGAAGAAGACCATGA 60.054 47.826 0.00 0.00 0.00 3.07
405 406 3.988976 TCCCAAGAAGAAGACCATGAG 57.011 47.619 0.00 0.00 0.00 2.90
406 407 3.520696 TCCCAAGAAGAAGACCATGAGA 58.479 45.455 0.00 0.00 0.00 3.27
407 408 3.517100 TCCCAAGAAGAAGACCATGAGAG 59.483 47.826 0.00 0.00 0.00 3.20
408 409 3.517100 CCCAAGAAGAAGACCATGAGAGA 59.483 47.826 0.00 0.00 0.00 3.10
409 410 4.019860 CCCAAGAAGAAGACCATGAGAGAA 60.020 45.833 0.00 0.00 0.00 2.87
410 411 5.177326 CCAAGAAGAAGACCATGAGAGAAG 58.823 45.833 0.00 0.00 0.00 2.85
411 412 5.046735 CCAAGAAGAAGACCATGAGAGAAGA 60.047 44.000 0.00 0.00 0.00 2.87
412 413 6.462500 CAAGAAGAAGACCATGAGAGAAGAA 58.538 40.000 0.00 0.00 0.00 2.52
413 414 6.678568 AGAAGAAGACCATGAGAGAAGAAA 57.321 37.500 0.00 0.00 0.00 2.52
414 415 6.463360 AGAAGAAGACCATGAGAGAAGAAAC 58.537 40.000 0.00 0.00 0.00 2.78
415 416 5.159273 AGAAGACCATGAGAGAAGAAACC 57.841 43.478 0.00 0.00 0.00 3.27
416 417 3.990959 AGACCATGAGAGAAGAAACCC 57.009 47.619 0.00 0.00 0.00 4.11
417 418 2.234908 AGACCATGAGAGAAGAAACCCG 59.765 50.000 0.00 0.00 0.00 5.28
418 419 1.279271 ACCATGAGAGAAGAAACCCGG 59.721 52.381 0.00 0.00 0.00 5.73
419 420 1.555075 CCATGAGAGAAGAAACCCGGA 59.445 52.381 0.73 0.00 0.00 5.14
420 421 2.027192 CCATGAGAGAAGAAACCCGGAA 60.027 50.000 0.73 0.00 0.00 4.30
421 422 3.559171 CCATGAGAGAAGAAACCCGGAAA 60.559 47.826 0.73 0.00 0.00 3.13
422 423 3.402628 TGAGAGAAGAAACCCGGAAAG 57.597 47.619 0.73 0.00 0.00 2.62
423 424 2.969950 TGAGAGAAGAAACCCGGAAAGA 59.030 45.455 0.73 0.00 0.00 2.52
424 425 3.244112 TGAGAGAAGAAACCCGGAAAGAC 60.244 47.826 0.73 0.00 0.00 3.01
425 426 2.973406 AGAGAAGAAACCCGGAAAGACT 59.027 45.455 0.73 0.00 0.00 3.24
426 427 3.391626 AGAGAAGAAACCCGGAAAGACTT 59.608 43.478 0.73 1.46 0.00 3.01
427 428 3.477530 AGAAGAAACCCGGAAAGACTTG 58.522 45.455 0.73 0.00 0.00 3.16
428 429 3.135895 AGAAGAAACCCGGAAAGACTTGA 59.864 43.478 0.73 0.00 0.00 3.02
429 430 3.127425 AGAAACCCGGAAAGACTTGAG 57.873 47.619 0.73 0.00 0.00 3.02
430 431 2.152016 GAAACCCGGAAAGACTTGAGG 58.848 52.381 0.73 0.00 0.00 3.86
431 432 0.250770 AACCCGGAAAGACTTGAGGC 60.251 55.000 0.73 0.00 0.00 4.70
432 433 1.741770 CCCGGAAAGACTTGAGGCG 60.742 63.158 0.73 0.00 0.00 5.52
433 434 1.292223 CCGGAAAGACTTGAGGCGA 59.708 57.895 0.00 0.00 0.00 5.54
434 435 0.737715 CCGGAAAGACTTGAGGCGAG 60.738 60.000 0.00 0.00 0.00 5.03
435 436 0.038159 CGGAAAGACTTGAGGCGAGT 60.038 55.000 0.00 0.00 0.00 4.18
436 437 1.715993 GGAAAGACTTGAGGCGAGTC 58.284 55.000 6.70 6.70 43.25 3.36
437 438 1.000955 GGAAAGACTTGAGGCGAGTCA 59.999 52.381 15.18 0.00 44.82 3.41
438 439 2.548067 GGAAAGACTTGAGGCGAGTCAA 60.548 50.000 15.18 4.86 44.82 3.18
439 440 2.910688 AAGACTTGAGGCGAGTCAAA 57.089 45.000 15.18 0.00 44.82 2.69
440 441 2.156343 AGACTTGAGGCGAGTCAAAC 57.844 50.000 15.18 3.73 44.82 2.93
441 442 1.689273 AGACTTGAGGCGAGTCAAACT 59.311 47.619 15.18 5.47 44.82 2.66
442 443 1.795286 GACTTGAGGCGAGTCAAACTG 59.205 52.381 9.39 0.00 42.66 3.16
443 444 1.151668 CTTGAGGCGAGTCAAACTGG 58.848 55.000 2.05 0.00 36.01 4.00
444 445 0.468226 TTGAGGCGAGTCAAACTGGT 59.532 50.000 0.00 0.00 33.41 4.00
445 446 0.249868 TGAGGCGAGTCAAACTGGTG 60.250 55.000 0.00 0.00 0.00 4.17
446 447 0.033504 GAGGCGAGTCAAACTGGTGA 59.966 55.000 0.00 0.00 0.00 4.02
447 448 0.468226 AGGCGAGTCAAACTGGTGAA 59.532 50.000 0.00 0.00 0.00 3.18
448 449 0.868406 GGCGAGTCAAACTGGTGAAG 59.132 55.000 0.00 0.00 0.00 3.02
449 450 1.540363 GGCGAGTCAAACTGGTGAAGA 60.540 52.381 0.00 0.00 0.00 2.87
450 451 2.417719 GCGAGTCAAACTGGTGAAGAT 58.582 47.619 0.00 0.00 0.00 2.40
451 452 2.158449 GCGAGTCAAACTGGTGAAGATG 59.842 50.000 0.00 0.00 0.00 2.90
452 453 3.393800 CGAGTCAAACTGGTGAAGATGT 58.606 45.455 0.00 0.00 0.00 3.06
453 454 3.430218 CGAGTCAAACTGGTGAAGATGTC 59.570 47.826 0.00 0.00 0.00 3.06
454 455 4.380531 GAGTCAAACTGGTGAAGATGTCA 58.619 43.478 0.00 0.00 0.00 3.58
462 463 2.440539 GTGAAGATGTCACGTGGACT 57.559 50.000 17.00 7.25 46.99 3.85
463 464 2.061773 GTGAAGATGTCACGTGGACTG 58.938 52.381 17.00 0.00 46.99 3.51
464 465 3.181907 GTGAAGATGTCACGTGGACTGG 61.182 54.545 17.00 0.00 46.99 4.00
465 466 5.413617 GTGAAGATGTCACGTGGACTGGA 62.414 52.174 17.00 0.00 46.99 3.86
468 469 4.968197 GTCACGTGGACTGGAGAC 57.032 61.111 17.00 0.00 43.46 3.36
469 470 1.081376 GTCACGTGGACTGGAGACG 60.081 63.158 17.00 0.00 43.46 4.18
470 471 2.430921 CACGTGGACTGGAGACGC 60.431 66.667 7.95 0.00 36.56 5.19
471 472 4.039357 ACGTGGACTGGAGACGCG 62.039 66.667 3.53 3.53 43.09 6.01
473 474 4.057428 GTGGACTGGAGACGCGCT 62.057 66.667 5.73 3.91 0.00 5.92
474 475 2.360726 TGGACTGGAGACGCGCTA 60.361 61.111 5.73 0.00 0.00 4.26
475 476 1.974875 TGGACTGGAGACGCGCTAA 60.975 57.895 5.73 0.00 0.00 3.09
476 477 1.516603 GGACTGGAGACGCGCTAAC 60.517 63.158 5.73 2.00 0.00 2.34
477 478 1.507174 GACTGGAGACGCGCTAACT 59.493 57.895 5.73 0.00 0.00 2.24
478 479 0.109226 GACTGGAGACGCGCTAACTT 60.109 55.000 5.73 0.00 0.00 2.66
479 480 0.388649 ACTGGAGACGCGCTAACTTG 60.389 55.000 5.73 0.00 0.00 3.16
480 481 0.388649 CTGGAGACGCGCTAACTTGT 60.389 55.000 5.73 0.00 0.00 3.16
481 482 0.388134 TGGAGACGCGCTAACTTGTC 60.388 55.000 5.73 4.06 0.00 3.18
482 483 0.388134 GGAGACGCGCTAACTTGTCA 60.388 55.000 5.73 0.00 33.83 3.58
483 484 1.630148 GAGACGCGCTAACTTGTCAT 58.370 50.000 5.73 0.00 33.83 3.06
484 485 1.584308 GAGACGCGCTAACTTGTCATC 59.416 52.381 5.73 0.84 33.83 2.92
485 486 1.067846 AGACGCGCTAACTTGTCATCA 60.068 47.619 5.73 0.00 33.83 3.07
486 487 1.927174 GACGCGCTAACTTGTCATCAT 59.073 47.619 5.73 0.00 0.00 2.45
487 488 1.927174 ACGCGCTAACTTGTCATCATC 59.073 47.619 5.73 0.00 0.00 2.92
488 489 2.196749 CGCGCTAACTTGTCATCATCT 58.803 47.619 5.56 0.00 0.00 2.90
489 490 2.217393 CGCGCTAACTTGTCATCATCTC 59.783 50.000 5.56 0.00 0.00 2.75
490 491 2.217393 GCGCTAACTTGTCATCATCTCG 59.783 50.000 0.00 0.00 0.00 4.04
491 492 2.217393 CGCTAACTTGTCATCATCTCGC 59.783 50.000 0.00 0.00 0.00 5.03
492 493 3.190079 GCTAACTTGTCATCATCTCGCA 58.810 45.455 0.00 0.00 0.00 5.10
493 494 3.618594 GCTAACTTGTCATCATCTCGCAA 59.381 43.478 0.00 0.00 0.00 4.85
494 495 4.260132 GCTAACTTGTCATCATCTCGCAAG 60.260 45.833 0.00 0.00 41.40 4.01
495 496 3.325293 ACTTGTCATCATCTCGCAAGT 57.675 42.857 0.00 0.00 43.09 3.16
496 497 3.257393 ACTTGTCATCATCTCGCAAGTC 58.743 45.455 0.00 0.00 44.10 3.01
497 498 3.256558 CTTGTCATCATCTCGCAAGTCA 58.743 45.455 0.00 0.00 39.48 3.41
498 499 2.610433 TGTCATCATCTCGCAAGTCAC 58.390 47.619 0.00 0.00 39.48 3.67
499 500 1.585668 GTCATCATCTCGCAAGTCACG 59.414 52.381 0.00 0.00 39.48 4.35
500 501 0.299895 CATCATCTCGCAAGTCACGC 59.700 55.000 0.00 0.00 39.48 5.34
518 519 2.029964 GGACTTGCCGACGGTGAA 59.970 61.111 16.73 7.97 0.00 3.18
519 520 2.027625 GGACTTGCCGACGGTGAAG 61.028 63.158 16.73 18.81 0.00 3.02
520 521 1.006571 GACTTGCCGACGGTGAAGA 60.007 57.895 25.54 5.92 0.00 2.87
521 522 1.282930 GACTTGCCGACGGTGAAGAC 61.283 60.000 25.54 18.75 0.00 3.01
522 523 1.300620 CTTGCCGACGGTGAAGACA 60.301 57.895 16.73 0.04 0.00 3.41
523 524 0.878523 CTTGCCGACGGTGAAGACAA 60.879 55.000 16.73 8.84 0.00 3.18
524 525 0.878523 TTGCCGACGGTGAAGACAAG 60.879 55.000 16.73 0.00 0.00 3.16
525 526 1.006571 GCCGACGGTGAAGACAAGA 60.007 57.895 16.73 0.00 0.00 3.02
526 527 1.009389 GCCGACGGTGAAGACAAGAG 61.009 60.000 16.73 0.00 0.00 2.85
527 528 0.314302 CCGACGGTGAAGACAAGAGT 59.686 55.000 5.48 0.00 0.00 3.24
528 529 1.409412 CGACGGTGAAGACAAGAGTG 58.591 55.000 0.00 0.00 0.00 3.51
529 530 1.269102 CGACGGTGAAGACAAGAGTGT 60.269 52.381 0.00 0.00 42.10 3.55
530 531 2.128035 GACGGTGAAGACAAGAGTGTG 58.872 52.381 0.00 0.00 38.41 3.82
531 532 1.202533 ACGGTGAAGACAAGAGTGTGG 60.203 52.381 0.00 0.00 38.41 4.17
532 533 1.068588 CGGTGAAGACAAGAGTGTGGA 59.931 52.381 0.00 0.00 38.41 4.02
533 534 2.483013 CGGTGAAGACAAGAGTGTGGAA 60.483 50.000 0.00 0.00 38.41 3.53
534 535 3.541632 GGTGAAGACAAGAGTGTGGAAA 58.458 45.455 0.00 0.00 38.41 3.13
535 536 4.137543 GGTGAAGACAAGAGTGTGGAAAT 58.862 43.478 0.00 0.00 38.41 2.17
536 537 5.305585 GGTGAAGACAAGAGTGTGGAAATA 58.694 41.667 0.00 0.00 38.41 1.40
537 538 5.940470 GGTGAAGACAAGAGTGTGGAAATAT 59.060 40.000 0.00 0.00 38.41 1.28
538 539 6.431234 GGTGAAGACAAGAGTGTGGAAATATT 59.569 38.462 0.00 0.00 38.41 1.28
539 540 7.040409 GGTGAAGACAAGAGTGTGGAAATATTT 60.040 37.037 0.00 0.00 38.41 1.40
540 541 8.999431 GTGAAGACAAGAGTGTGGAAATATTTA 58.001 33.333 0.00 0.00 38.41 1.40
541 542 9.567776 TGAAGACAAGAGTGTGGAAATATTTAA 57.432 29.630 0.00 0.00 38.41 1.52
564 565 7.690952 AATAGTGATCTAGGTATCGAAGACC 57.309 40.000 11.08 11.08 42.51 3.85
565 566 4.400120 AGTGATCTAGGTATCGAAGACCC 58.600 47.826 14.55 1.22 42.51 4.46
566 567 4.141228 AGTGATCTAGGTATCGAAGACCCA 60.141 45.833 14.55 2.59 42.51 4.51
567 568 4.023021 GTGATCTAGGTATCGAAGACCCAC 60.023 50.000 14.55 11.48 42.51 4.61
568 569 3.947612 TCTAGGTATCGAAGACCCACT 57.052 47.619 14.55 1.81 42.51 4.00
569 570 4.246712 TCTAGGTATCGAAGACCCACTT 57.753 45.455 14.55 1.50 42.51 3.16
583 584 7.793948 AAGACCCACTTCTACATTAACTAGT 57.206 36.000 0.00 0.00 32.91 2.57
584 585 7.407393 AGACCCACTTCTACATTAACTAGTC 57.593 40.000 0.00 0.00 0.00 2.59
585 586 6.952358 AGACCCACTTCTACATTAACTAGTCA 59.048 38.462 0.00 0.00 0.00 3.41
586 587 7.453752 AGACCCACTTCTACATTAACTAGTCAA 59.546 37.037 0.00 0.00 0.00 3.18
587 588 7.612677 ACCCACTTCTACATTAACTAGTCAAG 58.387 38.462 0.00 0.00 0.00 3.02
588 589 6.535508 CCCACTTCTACATTAACTAGTCAAGC 59.464 42.308 0.00 0.00 0.00 4.01
589 590 7.097192 CCACTTCTACATTAACTAGTCAAGCA 58.903 38.462 0.00 0.00 0.00 3.91
590 591 7.063544 CCACTTCTACATTAACTAGTCAAGCAC 59.936 40.741 0.00 0.00 0.00 4.40
591 592 7.063544 CACTTCTACATTAACTAGTCAAGCACC 59.936 40.741 0.00 0.00 0.00 5.01
592 593 5.974108 TCTACATTAACTAGTCAAGCACCC 58.026 41.667 0.00 0.00 0.00 4.61
593 594 4.634012 ACATTAACTAGTCAAGCACCCA 57.366 40.909 0.00 0.00 0.00 4.51
594 595 4.980573 ACATTAACTAGTCAAGCACCCAA 58.019 39.130 0.00 0.00 0.00 4.12
595 596 5.570320 ACATTAACTAGTCAAGCACCCAAT 58.430 37.500 0.00 0.00 0.00 3.16
596 597 5.648092 ACATTAACTAGTCAAGCACCCAATC 59.352 40.000 0.00 0.00 0.00 2.67
597 598 3.788227 AACTAGTCAAGCACCCAATCA 57.212 42.857 0.00 0.00 0.00 2.57
598 599 3.059352 ACTAGTCAAGCACCCAATCAC 57.941 47.619 0.00 0.00 0.00 3.06
599 600 2.371841 ACTAGTCAAGCACCCAATCACA 59.628 45.455 0.00 0.00 0.00 3.58
600 601 2.592102 AGTCAAGCACCCAATCACAT 57.408 45.000 0.00 0.00 0.00 3.21
601 602 2.165167 AGTCAAGCACCCAATCACATG 58.835 47.619 0.00 0.00 0.00 3.21
602 603 0.889994 TCAAGCACCCAATCACATGC 59.110 50.000 0.00 0.00 38.39 4.06
603 604 0.604073 CAAGCACCCAATCACATGCA 59.396 50.000 0.00 0.00 40.63 3.96
604 605 1.206132 CAAGCACCCAATCACATGCAT 59.794 47.619 0.00 0.00 40.63 3.96
605 606 1.563924 AGCACCCAATCACATGCATT 58.436 45.000 0.00 0.00 40.63 3.56
606 607 1.206132 AGCACCCAATCACATGCATTG 59.794 47.619 0.00 9.95 40.63 2.82
607 608 1.647346 CACCCAATCACATGCATTGC 58.353 50.000 0.00 0.46 30.94 3.56
608 609 1.066787 CACCCAATCACATGCATTGCA 60.067 47.619 14.72 14.72 44.86 4.08
623 624 6.347270 TGCATTGCATATTGTGTATTTTGC 57.653 33.333 7.38 0.00 31.71 3.68
624 625 5.873164 TGCATTGCATATTGTGTATTTTGCA 59.127 32.000 7.38 0.00 33.87 4.08
630 631 7.972527 TGCATATTGTGTATTTTGCATTTTCC 58.027 30.769 0.00 0.00 0.00 3.13
646 647 7.781056 TGCATTTTCCTTTTACAGAAAGACTT 58.219 30.769 0.34 0.00 33.75 3.01
667 669 0.597637 AGTCAAGTCAACCACGCTCG 60.598 55.000 0.00 0.00 0.00 5.03
673 675 1.080093 TCAACCACGCTCGATCCAC 60.080 57.895 0.00 0.00 0.00 4.02
680 682 2.013483 CGCTCGATCCACATCTCGC 61.013 63.158 0.00 0.00 34.94 5.03
687 689 0.107508 ATCCACATCTCGCTGGGTTG 60.108 55.000 0.00 0.00 0.00 3.77
704 706 5.514169 TGGGTTGATTTATATGCACCTTCA 58.486 37.500 0.00 0.00 0.00 3.02
713 715 7.734924 TTTATATGCACCTTCAGCTATCAAG 57.265 36.000 0.00 0.00 0.00 3.02
717 719 3.244875 TGCACCTTCAGCTATCAAGGAAA 60.245 43.478 20.16 6.70 41.74 3.13
718 720 3.127721 GCACCTTCAGCTATCAAGGAAAC 59.872 47.826 20.16 8.73 41.74 2.78
719 721 3.691609 CACCTTCAGCTATCAAGGAAACC 59.308 47.826 20.16 0.00 41.74 3.27
720 722 3.330701 ACCTTCAGCTATCAAGGAAACCA 59.669 43.478 20.16 0.00 41.74 3.67
721 723 4.018050 ACCTTCAGCTATCAAGGAAACCAT 60.018 41.667 20.16 0.00 41.74 3.55
722 724 4.952335 CCTTCAGCTATCAAGGAAACCATT 59.048 41.667 11.33 0.00 41.74 3.16
723 725 5.067023 CCTTCAGCTATCAAGGAAACCATTC 59.933 44.000 11.33 0.00 41.74 2.67
724 726 5.178096 TCAGCTATCAAGGAAACCATTCA 57.822 39.130 0.00 0.00 37.29 2.57
725 727 5.759059 TCAGCTATCAAGGAAACCATTCAT 58.241 37.500 0.00 0.00 37.29 2.57
728 730 5.760253 AGCTATCAAGGAAACCATTCATACG 59.240 40.000 0.00 0.00 37.29 3.06
739 741 7.307632 GGAAACCATTCATACGATTCATCTCAG 60.308 40.741 0.00 0.00 37.29 3.35
758 762 0.323725 GAAGCCTCAGCCCCATTTCA 60.324 55.000 0.00 0.00 41.25 2.69
773 777 3.582208 CCATTTCATTGTTCCCTTCCCAA 59.418 43.478 0.00 0.00 0.00 4.12
774 778 4.322953 CCATTTCATTGTTCCCTTCCCAAG 60.323 45.833 0.00 0.00 0.00 3.61
779 790 0.991920 TGTTCCCTTCCCAAGCTAGG 59.008 55.000 0.00 0.00 0.00 3.02
832 854 7.867909 GGTCAGTGCTTTTTATTAAGAAGCTTT 59.132 33.333 24.04 14.00 44.55 3.51
863 890 2.914379 GCTCGTAGCACAACCAAGT 58.086 52.632 2.53 0.00 41.89 3.16
866 893 2.602217 GCTCGTAGCACAACCAAGTTTG 60.602 50.000 2.53 0.00 41.89 2.93
872 899 3.023832 AGCACAACCAAGTTTGTAGCTT 58.976 40.909 0.00 0.00 39.07 3.74
877 904 6.199393 CACAACCAAGTTTGTAGCTTAGTTC 58.801 40.000 0.00 0.00 37.62 3.01
881 908 7.399245 ACCAAGTTTGTAGCTTAGTTCAAAA 57.601 32.000 0.00 0.00 32.81 2.44
902 930 1.904287 AATGGTGCGGCTTTACTCAA 58.096 45.000 0.00 0.00 0.00 3.02
908 936 3.297472 GTGCGGCTTTACTCAAGTTTTC 58.703 45.455 0.00 0.00 34.56 2.29
910 938 2.552743 GCGGCTTTACTCAAGTTTTCCT 59.447 45.455 0.00 0.00 34.56 3.36
951 983 7.983484 AGATTTTATTGCCCTTGCTTTGATAAG 59.017 33.333 0.00 0.00 38.71 1.73
953 985 6.603940 TTATTGCCCTTGCTTTGATAAGTT 57.396 33.333 0.00 0.00 38.71 2.66
1009 1057 9.730705 TTCTCATATCATCAGAAATGAATACCC 57.269 33.333 0.00 0.00 0.00 3.69
1097 1166 5.450826 CCATCACAGATCAGTTCTCAGAGAG 60.451 48.000 0.00 0.00 29.93 3.20
1105 1174 1.000283 AGTTCTCAGAGAGCCGTGTTG 60.000 52.381 10.52 0.00 0.00 3.33
1193 1284 5.629020 TGAAAAGTTGCGCATATTTCTGAAC 59.371 36.000 28.02 16.16 32.60 3.18
1326 1419 2.752354 TCAAAACATCATGGCTTACCGG 59.248 45.455 0.00 0.00 39.70 5.28
1559 1752 7.324178 TCTGTTCTCTTCCTTGAGCTATTAAC 58.676 38.462 0.00 0.00 34.29 2.01
1914 2207 2.771089 CCAACTGTATGCAGCGGATAT 58.229 47.619 11.09 0.00 46.30 1.63
2310 2645 0.596082 GAGAGGCTCGGTAGATGCTC 59.404 60.000 9.22 0.00 0.00 4.26
2398 2769 5.780282 TGAATAGGAGGAACTTCTGTCTTCA 59.220 40.000 0.00 0.00 46.84 3.02
2593 3078 1.130054 ATGGATGGGATCGAGGTGGG 61.130 60.000 0.00 0.00 0.00 4.61
2596 3081 1.002921 ATGGGATCGAGGTGGGTCA 59.997 57.895 0.00 0.00 0.00 4.02
2621 3108 3.074412 CAATCCGTTTGTCTAACCAGCT 58.926 45.455 0.00 0.00 32.92 4.24
2644 3131 9.506018 AGCTAGCCAATTTTATTCAATTTTTGT 57.494 25.926 12.13 0.00 0.00 2.83
2657 3144 6.820470 TCAATTTTTGTGGCTAGTTTTTCG 57.180 33.333 0.00 0.00 0.00 3.46
2797 3294 2.620627 GGCCAGTTAGGTTGCATTAGGT 60.621 50.000 0.00 0.00 40.61 3.08
3120 3634 3.575805 AGAAGGGCAACATGGAAGAAAA 58.424 40.909 0.00 0.00 39.74 2.29
3375 3914 4.080863 ACGTCTCCATAGGCAAAGAAGAAT 60.081 41.667 0.00 0.00 0.00 2.40
3397 3936 2.224621 GGCATATTCTGGCTAGCCTCAA 60.225 50.000 33.07 24.45 46.59 3.02
3422 3961 0.979709 GGTAGGGCTCCTTTACGGGT 60.980 60.000 0.00 0.00 34.61 5.28
3476 4015 1.901833 CCCAATGCTTTTGGTAGCCTT 59.098 47.619 15.13 0.00 40.49 4.35
3547 4086 2.040412 CCTGAGGAAACCTTAGCTTGGT 59.960 50.000 0.00 5.39 36.13 3.67
3783 4322 1.367346 TATGGAGGTGGCCAAACAGA 58.633 50.000 7.24 0.00 42.16 3.41
3794 4333 2.359900 GCCAAACAGAATGGACTCGAT 58.640 47.619 0.00 0.00 43.62 3.59
3802 4341 4.023622 ACAGAATGGACTCGATGATAGTCG 60.024 45.833 0.00 0.00 43.55 4.18
3851 4390 2.346847 CGAGGCTCACATTTTCTTCTCG 59.653 50.000 15.95 0.00 37.21 4.04
3897 4436 2.309755 AGCTTTTCCATGATGGTCTGGA 59.690 45.455 11.87 0.00 39.03 3.86
3906 4445 6.620429 TCCATGATGGTCTGGATACTAAGTA 58.380 40.000 11.87 0.00 39.03 2.24
3988 4527 3.133003 GGCATCTCTTCTGGCTAGTGTTA 59.867 47.826 0.00 0.00 36.34 2.41
4056 4595 1.913419 TCCGCCTTAGAGGGAAACAAT 59.087 47.619 0.00 0.00 35.37 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.429681 TCATGAAGAAAACTCGGGGATTA 57.570 39.130 0.00 0.00 0.00 1.75
1 2 4.301072 TCATGAAGAAAACTCGGGGATT 57.699 40.909 0.00 0.00 0.00 3.01
2 3 4.301072 TTCATGAAGAAAACTCGGGGAT 57.699 40.909 3.38 0.00 32.05 3.85
3 4 3.780804 TTCATGAAGAAAACTCGGGGA 57.219 42.857 3.38 0.00 32.05 4.81
4 5 6.509418 TTAATTCATGAAGAAAACTCGGGG 57.491 37.500 14.54 0.00 40.22 5.73
5 6 8.810652 TTTTTAATTCATGAAGAAAACTCGGG 57.189 30.769 21.75 0.00 40.22 5.14
165 166 9.838975 GAACCTTTTTGTGAATTTTTGAACATT 57.161 25.926 0.00 0.00 0.00 2.71
166 167 8.174422 CGAACCTTTTTGTGAATTTTTGAACAT 58.826 29.630 0.00 0.00 0.00 2.71
167 168 7.171678 ACGAACCTTTTTGTGAATTTTTGAACA 59.828 29.630 0.00 0.00 0.00 3.18
168 169 7.477112 CACGAACCTTTTTGTGAATTTTTGAAC 59.523 33.333 0.00 0.00 46.56 3.18
169 170 7.513968 CACGAACCTTTTTGTGAATTTTTGAA 58.486 30.769 0.00 0.00 46.56 2.69
170 171 7.054855 CACGAACCTTTTTGTGAATTTTTGA 57.945 32.000 0.00 0.00 46.56 2.69
179 180 7.513190 TTACAAATTCACGAACCTTTTTGTG 57.487 32.000 14.83 0.00 45.43 3.33
180 181 8.535690 TTTTACAAATTCACGAACCTTTTTGT 57.464 26.923 11.72 11.72 39.70 2.83
181 182 9.419737 CATTTTACAAATTCACGAACCTTTTTG 57.580 29.630 0.00 3.28 0.00 2.44
182 183 9.157104 ACATTTTACAAATTCACGAACCTTTTT 57.843 25.926 0.00 0.00 0.00 1.94
183 184 8.710835 ACATTTTACAAATTCACGAACCTTTT 57.289 26.923 0.00 0.00 0.00 2.27
184 185 9.240159 GTACATTTTACAAATTCACGAACCTTT 57.760 29.630 0.00 0.00 0.00 3.11
185 186 8.407064 TGTACATTTTACAAATTCACGAACCTT 58.593 29.630 0.00 0.00 0.00 3.50
186 187 7.932335 TGTACATTTTACAAATTCACGAACCT 58.068 30.769 0.00 0.00 0.00 3.50
187 188 7.325097 CCTGTACATTTTACAAATTCACGAACC 59.675 37.037 0.00 0.00 0.00 3.62
188 189 8.071368 TCCTGTACATTTTACAAATTCACGAAC 58.929 33.333 0.00 0.00 0.00 3.95
189 190 8.155821 TCCTGTACATTTTACAAATTCACGAA 57.844 30.769 0.00 0.00 0.00 3.85
190 191 7.731882 TCCTGTACATTTTACAAATTCACGA 57.268 32.000 0.00 0.00 0.00 4.35
191 192 8.964420 AATCCTGTACATTTTACAAATTCACG 57.036 30.769 0.00 0.00 0.00 4.35
202 203 9.612066 ACATTTGTTTGAAATCCTGTACATTTT 57.388 25.926 0.00 0.00 0.00 1.82
203 204 9.612066 AACATTTGTTTGAAATCCTGTACATTT 57.388 25.926 0.00 0.00 33.93 2.32
204 205 9.044150 CAACATTTGTTTGAAATCCTGTACATT 57.956 29.630 0.00 0.00 35.83 2.71
205 206 7.656948 CCAACATTTGTTTGAAATCCTGTACAT 59.343 33.333 0.00 0.00 35.83 2.29
206 207 6.983307 CCAACATTTGTTTGAAATCCTGTACA 59.017 34.615 0.00 0.00 35.83 2.90
207 208 6.983890 ACCAACATTTGTTTGAAATCCTGTAC 59.016 34.615 1.93 0.00 35.83 2.90
208 209 6.983307 CACCAACATTTGTTTGAAATCCTGTA 59.017 34.615 1.93 0.00 35.83 2.74
209 210 5.816777 CACCAACATTTGTTTGAAATCCTGT 59.183 36.000 1.93 0.00 35.83 4.00
210 211 6.047870 TCACCAACATTTGTTTGAAATCCTG 58.952 36.000 1.93 0.00 35.83 3.86
211 212 6.232581 TCACCAACATTTGTTTGAAATCCT 57.767 33.333 1.93 0.00 35.83 3.24
212 213 6.917217 TTCACCAACATTTGTTTGAAATCC 57.083 33.333 7.68 0.00 34.02 3.01
214 215 7.254727 CGGATTTCACCAACATTTGTTTGAAAT 60.255 33.333 23.26 23.26 46.80 2.17
215 216 6.036517 CGGATTTCACCAACATTTGTTTGAAA 59.963 34.615 18.39 18.39 43.21 2.69
216 217 5.521735 CGGATTTCACCAACATTTGTTTGAA 59.478 36.000 6.50 6.50 34.70 2.69
217 218 5.046529 CGGATTTCACCAACATTTGTTTGA 58.953 37.500 1.93 0.00 35.83 2.69
218 219 5.046529 TCGGATTTCACCAACATTTGTTTG 58.953 37.500 0.00 0.00 35.83 2.93
219 220 5.269505 TCGGATTTCACCAACATTTGTTT 57.730 34.783 0.00 0.00 35.83 2.83
220 221 4.927978 TCGGATTTCACCAACATTTGTT 57.072 36.364 0.00 0.00 39.12 2.83
221 222 4.927978 TTCGGATTTCACCAACATTTGT 57.072 36.364 0.00 0.00 0.00 2.83
222 223 5.288804 AGTTTCGGATTTCACCAACATTTG 58.711 37.500 0.00 0.00 0.00 2.32
223 224 5.529581 AGTTTCGGATTTCACCAACATTT 57.470 34.783 0.00 0.00 0.00 2.32
224 225 6.834168 ATAGTTTCGGATTTCACCAACATT 57.166 33.333 0.00 0.00 0.00 2.71
225 226 6.432783 TGAATAGTTTCGGATTTCACCAACAT 59.567 34.615 0.00 0.00 34.39 2.71
226 227 5.765677 TGAATAGTTTCGGATTTCACCAACA 59.234 36.000 0.00 0.00 34.39 3.33
227 228 6.249035 TGAATAGTTTCGGATTTCACCAAC 57.751 37.500 0.00 0.00 34.39 3.77
228 229 6.657117 TCATGAATAGTTTCGGATTTCACCAA 59.343 34.615 0.00 0.00 34.39 3.67
229 230 6.176896 TCATGAATAGTTTCGGATTTCACCA 58.823 36.000 0.00 0.00 34.39 4.17
230 231 6.677781 TCATGAATAGTTTCGGATTTCACC 57.322 37.500 0.00 0.00 34.39 4.02
285 286 7.660030 TCCTCTGTTTTTCCTTCTGATTTTT 57.340 32.000 0.00 0.00 0.00 1.94
286 287 7.660030 TTCCTCTGTTTTTCCTTCTGATTTT 57.340 32.000 0.00 0.00 0.00 1.82
287 288 7.660030 TTTCCTCTGTTTTTCCTTCTGATTT 57.340 32.000 0.00 0.00 0.00 2.17
288 289 7.201947 CCTTTTCCTCTGTTTTTCCTTCTGATT 60.202 37.037 0.00 0.00 0.00 2.57
289 290 6.266330 CCTTTTCCTCTGTTTTTCCTTCTGAT 59.734 38.462 0.00 0.00 0.00 2.90
290 291 5.594317 CCTTTTCCTCTGTTTTTCCTTCTGA 59.406 40.000 0.00 0.00 0.00 3.27
291 292 5.221322 CCCTTTTCCTCTGTTTTTCCTTCTG 60.221 44.000 0.00 0.00 0.00 3.02
292 293 4.895889 CCCTTTTCCTCTGTTTTTCCTTCT 59.104 41.667 0.00 0.00 0.00 2.85
293 294 4.893524 TCCCTTTTCCTCTGTTTTTCCTTC 59.106 41.667 0.00 0.00 0.00 3.46
294 295 4.878968 TCCCTTTTCCTCTGTTTTTCCTT 58.121 39.130 0.00 0.00 0.00 3.36
295 296 4.168088 TCTCCCTTTTCCTCTGTTTTTCCT 59.832 41.667 0.00 0.00 0.00 3.36
296 297 4.470602 TCTCCCTTTTCCTCTGTTTTTCC 58.529 43.478 0.00 0.00 0.00 3.13
297 298 6.465439 TTTCTCCCTTTTCCTCTGTTTTTC 57.535 37.500 0.00 0.00 0.00 2.29
298 299 6.440647 AGTTTTCTCCCTTTTCCTCTGTTTTT 59.559 34.615 0.00 0.00 0.00 1.94
299 300 5.958380 AGTTTTCTCCCTTTTCCTCTGTTTT 59.042 36.000 0.00 0.00 0.00 2.43
300 301 5.360999 CAGTTTTCTCCCTTTTCCTCTGTTT 59.639 40.000 0.00 0.00 0.00 2.83
301 302 4.889995 CAGTTTTCTCCCTTTTCCTCTGTT 59.110 41.667 0.00 0.00 0.00 3.16
302 303 4.464947 CAGTTTTCTCCCTTTTCCTCTGT 58.535 43.478 0.00 0.00 0.00 3.41
303 304 3.823304 CCAGTTTTCTCCCTTTTCCTCTG 59.177 47.826 0.00 0.00 0.00 3.35
304 305 3.463704 ACCAGTTTTCTCCCTTTTCCTCT 59.536 43.478 0.00 0.00 0.00 3.69
305 306 3.833732 ACCAGTTTTCTCCCTTTTCCTC 58.166 45.455 0.00 0.00 0.00 3.71
306 307 3.973472 ACCAGTTTTCTCCCTTTTCCT 57.027 42.857 0.00 0.00 0.00 3.36
307 308 3.958147 TGAACCAGTTTTCTCCCTTTTCC 59.042 43.478 0.00 0.00 0.00 3.13
308 309 5.791336 ATGAACCAGTTTTCTCCCTTTTC 57.209 39.130 0.00 0.00 0.00 2.29
309 310 7.669089 TTTATGAACCAGTTTTCTCCCTTTT 57.331 32.000 0.00 0.00 0.00 2.27
310 311 7.563556 TCTTTTATGAACCAGTTTTCTCCCTTT 59.436 33.333 0.00 0.00 0.00 3.11
311 312 7.066781 TCTTTTATGAACCAGTTTTCTCCCTT 58.933 34.615 0.00 0.00 0.00 3.95
312 313 6.610830 TCTTTTATGAACCAGTTTTCTCCCT 58.389 36.000 0.00 0.00 0.00 4.20
313 314 6.894339 TCTTTTATGAACCAGTTTTCTCCC 57.106 37.500 0.00 0.00 0.00 4.30
314 315 8.576442 TGATTCTTTTATGAACCAGTTTTCTCC 58.424 33.333 0.00 0.00 0.00 3.71
315 316 9.965824 TTGATTCTTTTATGAACCAGTTTTCTC 57.034 29.630 0.00 0.00 0.00 2.87
316 317 9.971922 CTTGATTCTTTTATGAACCAGTTTTCT 57.028 29.630 0.00 0.00 0.00 2.52
317 318 9.965824 TCTTGATTCTTTTATGAACCAGTTTTC 57.034 29.630 0.00 0.00 0.00 2.29
321 322 9.525826 AGATTCTTGATTCTTTTATGAACCAGT 57.474 29.630 0.00 0.00 0.00 4.00
324 325 9.794685 GGAAGATTCTTGATTCTTTTATGAACC 57.205 33.333 3.03 2.18 0.00 3.62
325 326 9.794685 GGGAAGATTCTTGATTCTTTTATGAAC 57.205 33.333 3.03 0.00 0.00 3.18
326 327 9.532494 TGGGAAGATTCTTGATTCTTTTATGAA 57.468 29.630 3.03 0.00 0.00 2.57
327 328 9.532494 TTGGGAAGATTCTTGATTCTTTTATGA 57.468 29.630 3.03 0.00 0.00 2.15
331 332 9.330063 GTTTTTGGGAAGATTCTTGATTCTTTT 57.670 29.630 3.03 0.00 0.00 2.27
332 333 7.653311 CGTTTTTGGGAAGATTCTTGATTCTTT 59.347 33.333 3.03 0.00 0.00 2.52
333 334 7.014230 TCGTTTTTGGGAAGATTCTTGATTCTT 59.986 33.333 3.03 7.29 0.00 2.52
334 335 6.490040 TCGTTTTTGGGAAGATTCTTGATTCT 59.510 34.615 3.03 0.00 0.00 2.40
335 336 6.677913 TCGTTTTTGGGAAGATTCTTGATTC 58.322 36.000 3.03 0.00 0.00 2.52
336 337 6.648879 TCGTTTTTGGGAAGATTCTTGATT 57.351 33.333 3.03 0.00 0.00 2.57
337 338 6.350445 CCATCGTTTTTGGGAAGATTCTTGAT 60.350 38.462 3.03 0.00 0.00 2.57
338 339 5.048083 CCATCGTTTTTGGGAAGATTCTTGA 60.048 40.000 3.03 0.00 0.00 3.02
339 340 5.163513 CCATCGTTTTTGGGAAGATTCTTG 58.836 41.667 3.03 0.00 0.00 3.02
340 341 5.391312 CCATCGTTTTTGGGAAGATTCTT 57.609 39.130 0.00 0.00 0.00 2.52
350 351 3.554129 GGTTTCTTCCCCATCGTTTTTGG 60.554 47.826 0.00 0.00 0.00 3.28
351 352 3.554129 GGGTTTCTTCCCCATCGTTTTTG 60.554 47.826 0.00 0.00 42.15 2.44
352 353 2.631062 GGGTTTCTTCCCCATCGTTTTT 59.369 45.455 0.00 0.00 42.15 1.94
353 354 2.244695 GGGTTTCTTCCCCATCGTTTT 58.755 47.619 0.00 0.00 42.15 2.43
354 355 1.884928 CGGGTTTCTTCCCCATCGTTT 60.885 52.381 0.00 0.00 44.32 3.60
355 356 0.322187 CGGGTTTCTTCCCCATCGTT 60.322 55.000 0.00 0.00 44.32 3.85
356 357 1.298667 CGGGTTTCTTCCCCATCGT 59.701 57.895 0.00 0.00 44.32 3.73
357 358 1.451387 CCGGGTTTCTTCCCCATCG 60.451 63.158 0.00 0.00 44.32 3.84
358 359 0.330267 TTCCGGGTTTCTTCCCCATC 59.670 55.000 0.00 0.00 44.32 3.51
359 360 1.007607 ATTCCGGGTTTCTTCCCCAT 58.992 50.000 0.00 0.00 44.32 4.00
360 361 0.039035 CATTCCGGGTTTCTTCCCCA 59.961 55.000 0.00 0.00 44.32 4.96
361 362 0.683179 CCATTCCGGGTTTCTTCCCC 60.683 60.000 0.00 0.00 44.32 4.81
362 363 2.882170 CCATTCCGGGTTTCTTCCC 58.118 57.895 0.00 0.00 43.78 3.97
380 381 1.683319 GGTCTTCTTCTTGGGATGGCC 60.683 57.143 0.00 0.00 0.00 5.36
381 382 1.004745 TGGTCTTCTTCTTGGGATGGC 59.995 52.381 0.00 0.00 0.00 4.40
382 383 3.054139 TCATGGTCTTCTTCTTGGGATGG 60.054 47.826 0.00 0.00 0.00 3.51
383 384 4.080695 TCTCATGGTCTTCTTCTTGGGATG 60.081 45.833 0.00 0.00 0.00 3.51
384 385 4.107072 TCTCATGGTCTTCTTCTTGGGAT 58.893 43.478 0.00 0.00 0.00 3.85
385 386 3.517100 CTCTCATGGTCTTCTTCTTGGGA 59.483 47.826 0.00 0.00 0.00 4.37
386 387 3.517100 TCTCTCATGGTCTTCTTCTTGGG 59.483 47.826 0.00 0.00 0.00 4.12
387 388 4.815533 TCTCTCATGGTCTTCTTCTTGG 57.184 45.455 0.00 0.00 0.00 3.61
388 389 6.035368 TCTTCTCTCATGGTCTTCTTCTTG 57.965 41.667 0.00 0.00 0.00 3.02
389 390 6.678568 TTCTTCTCTCATGGTCTTCTTCTT 57.321 37.500 0.00 0.00 0.00 2.52
390 391 6.463360 GTTTCTTCTCTCATGGTCTTCTTCT 58.537 40.000 0.00 0.00 0.00 2.85
391 392 5.641636 GGTTTCTTCTCTCATGGTCTTCTTC 59.358 44.000 0.00 0.00 0.00 2.87
392 393 5.513962 GGGTTTCTTCTCTCATGGTCTTCTT 60.514 44.000 0.00 0.00 0.00 2.52
393 394 4.019771 GGGTTTCTTCTCTCATGGTCTTCT 60.020 45.833 0.00 0.00 0.00 2.85
394 395 4.257731 GGGTTTCTTCTCTCATGGTCTTC 58.742 47.826 0.00 0.00 0.00 2.87
395 396 3.307059 CGGGTTTCTTCTCTCATGGTCTT 60.307 47.826 0.00 0.00 0.00 3.01
396 397 2.234908 CGGGTTTCTTCTCTCATGGTCT 59.765 50.000 0.00 0.00 0.00 3.85
397 398 2.622436 CGGGTTTCTTCTCTCATGGTC 58.378 52.381 0.00 0.00 0.00 4.02
398 399 1.279271 CCGGGTTTCTTCTCTCATGGT 59.721 52.381 0.00 0.00 0.00 3.55
399 400 1.555075 TCCGGGTTTCTTCTCTCATGG 59.445 52.381 0.00 0.00 0.00 3.66
400 401 3.334583 TTCCGGGTTTCTTCTCTCATG 57.665 47.619 0.00 0.00 0.00 3.07
401 402 3.583086 TCTTTCCGGGTTTCTTCTCTCAT 59.417 43.478 0.00 0.00 0.00 2.90
402 403 2.969950 TCTTTCCGGGTTTCTTCTCTCA 59.030 45.455 0.00 0.00 0.00 3.27
403 404 3.007074 AGTCTTTCCGGGTTTCTTCTCTC 59.993 47.826 0.00 0.00 0.00 3.20
404 405 2.973406 AGTCTTTCCGGGTTTCTTCTCT 59.027 45.455 0.00 0.00 0.00 3.10
405 406 3.404224 AGTCTTTCCGGGTTTCTTCTC 57.596 47.619 0.00 0.00 0.00 2.87
406 407 3.135895 TCAAGTCTTTCCGGGTTTCTTCT 59.864 43.478 0.00 0.00 0.00 2.85
407 408 3.473625 TCAAGTCTTTCCGGGTTTCTTC 58.526 45.455 0.00 0.00 0.00 2.87
408 409 3.477530 CTCAAGTCTTTCCGGGTTTCTT 58.522 45.455 0.00 0.00 0.00 2.52
409 410 2.224548 CCTCAAGTCTTTCCGGGTTTCT 60.225 50.000 0.00 0.00 0.00 2.52
410 411 2.152016 CCTCAAGTCTTTCCGGGTTTC 58.848 52.381 0.00 0.00 0.00 2.78
411 412 1.818131 GCCTCAAGTCTTTCCGGGTTT 60.818 52.381 0.00 0.00 0.00 3.27
412 413 0.250770 GCCTCAAGTCTTTCCGGGTT 60.251 55.000 0.00 0.00 0.00 4.11
413 414 1.375326 GCCTCAAGTCTTTCCGGGT 59.625 57.895 0.00 0.00 0.00 5.28
414 415 1.741770 CGCCTCAAGTCTTTCCGGG 60.742 63.158 0.00 0.00 0.00 5.73
415 416 0.737715 CTCGCCTCAAGTCTTTCCGG 60.738 60.000 0.00 0.00 0.00 5.14
416 417 0.038159 ACTCGCCTCAAGTCTTTCCG 60.038 55.000 0.00 0.00 0.00 4.30
417 418 1.000955 TGACTCGCCTCAAGTCTTTCC 59.999 52.381 5.03 0.00 42.93 3.13
418 419 2.440539 TGACTCGCCTCAAGTCTTTC 57.559 50.000 5.03 0.00 42.93 2.62
419 420 2.872858 GTTTGACTCGCCTCAAGTCTTT 59.127 45.455 5.03 0.00 42.93 2.52
420 421 2.103263 AGTTTGACTCGCCTCAAGTCTT 59.897 45.455 5.03 0.00 42.93 3.01
421 422 1.689273 AGTTTGACTCGCCTCAAGTCT 59.311 47.619 5.03 1.27 42.93 3.24
422 423 1.795286 CAGTTTGACTCGCCTCAAGTC 59.205 52.381 0.00 0.00 42.83 3.01
423 424 1.541233 CCAGTTTGACTCGCCTCAAGT 60.541 52.381 0.00 0.00 31.76 3.16
424 425 1.151668 CCAGTTTGACTCGCCTCAAG 58.848 55.000 0.00 0.00 31.76 3.02
425 426 0.468226 ACCAGTTTGACTCGCCTCAA 59.532 50.000 0.00 0.00 0.00 3.02
426 427 0.249868 CACCAGTTTGACTCGCCTCA 60.250 55.000 0.00 0.00 0.00 3.86
427 428 0.033504 TCACCAGTTTGACTCGCCTC 59.966 55.000 0.00 0.00 0.00 4.70
428 429 0.468226 TTCACCAGTTTGACTCGCCT 59.532 50.000 0.00 0.00 0.00 5.52
429 430 0.868406 CTTCACCAGTTTGACTCGCC 59.132 55.000 0.00 0.00 0.00 5.54
430 431 1.865865 TCTTCACCAGTTTGACTCGC 58.134 50.000 0.00 0.00 0.00 5.03
431 432 3.393800 ACATCTTCACCAGTTTGACTCG 58.606 45.455 0.00 0.00 0.00 4.18
432 433 4.380531 TGACATCTTCACCAGTTTGACTC 58.619 43.478 0.00 0.00 0.00 3.36
433 434 4.422073 TGACATCTTCACCAGTTTGACT 57.578 40.909 0.00 0.00 0.00 3.41
451 452 1.081376 CGTCTCCAGTCCACGTGAC 60.081 63.158 19.30 13.24 44.82 3.67
452 453 2.916052 GCGTCTCCAGTCCACGTGA 61.916 63.158 19.30 0.00 35.91 4.35
453 454 2.430921 GCGTCTCCAGTCCACGTG 60.431 66.667 9.08 9.08 35.91 4.49
454 455 4.039357 CGCGTCTCCAGTCCACGT 62.039 66.667 0.00 0.00 35.91 4.49
456 457 2.209064 TTAGCGCGTCTCCAGTCCAC 62.209 60.000 8.43 0.00 0.00 4.02
457 458 1.974875 TTAGCGCGTCTCCAGTCCA 60.975 57.895 8.43 0.00 0.00 4.02
458 459 1.516603 GTTAGCGCGTCTCCAGTCC 60.517 63.158 8.43 0.00 0.00 3.85
459 460 0.109226 AAGTTAGCGCGTCTCCAGTC 60.109 55.000 8.43 0.00 0.00 3.51
460 461 0.388649 CAAGTTAGCGCGTCTCCAGT 60.389 55.000 8.43 0.00 0.00 4.00
461 462 0.388649 ACAAGTTAGCGCGTCTCCAG 60.389 55.000 8.43 0.00 0.00 3.86
462 463 0.388134 GACAAGTTAGCGCGTCTCCA 60.388 55.000 8.43 0.00 0.00 3.86
463 464 0.388134 TGACAAGTTAGCGCGTCTCC 60.388 55.000 8.43 0.26 0.00 3.71
464 465 1.584308 GATGACAAGTTAGCGCGTCTC 59.416 52.381 8.43 0.00 0.00 3.36
465 466 1.067846 TGATGACAAGTTAGCGCGTCT 60.068 47.619 8.43 8.22 0.00 4.18
466 467 1.346365 TGATGACAAGTTAGCGCGTC 58.654 50.000 8.43 2.40 0.00 5.19
467 468 1.927174 GATGATGACAAGTTAGCGCGT 59.073 47.619 8.43 0.00 0.00 6.01
468 469 2.196749 AGATGATGACAAGTTAGCGCG 58.803 47.619 0.00 0.00 0.00 6.86
469 470 2.217393 CGAGATGATGACAAGTTAGCGC 59.783 50.000 0.00 0.00 0.00 5.92
470 471 2.217393 GCGAGATGATGACAAGTTAGCG 59.783 50.000 0.00 0.00 0.00 4.26
471 472 3.190079 TGCGAGATGATGACAAGTTAGC 58.810 45.455 0.00 0.00 0.00 3.09
472 473 4.867047 ACTTGCGAGATGATGACAAGTTAG 59.133 41.667 8.31 0.00 46.47 2.34
473 474 4.820897 ACTTGCGAGATGATGACAAGTTA 58.179 39.130 8.31 0.00 46.47 2.24
474 475 3.668447 ACTTGCGAGATGATGACAAGTT 58.332 40.909 8.31 0.00 46.47 2.66
475 476 3.325293 ACTTGCGAGATGATGACAAGT 57.675 42.857 8.31 0.00 44.47 3.16
476 477 3.061831 GTGACTTGCGAGATGATGACAAG 59.938 47.826 8.31 0.00 42.63 3.16
477 478 2.995939 GTGACTTGCGAGATGATGACAA 59.004 45.455 8.31 0.00 0.00 3.18
478 479 2.610433 GTGACTTGCGAGATGATGACA 58.390 47.619 8.31 0.00 0.00 3.58
479 480 1.585668 CGTGACTTGCGAGATGATGAC 59.414 52.381 8.31 0.00 0.00 3.06
480 481 1.913317 CGTGACTTGCGAGATGATGA 58.087 50.000 8.31 0.00 0.00 2.92
481 482 0.299895 GCGTGACTTGCGAGATGATG 59.700 55.000 8.31 0.00 0.00 3.07
482 483 2.670635 GCGTGACTTGCGAGATGAT 58.329 52.632 8.31 0.00 0.00 2.45
483 484 4.169102 GCGTGACTTGCGAGATGA 57.831 55.556 8.31 0.00 0.00 2.92
501 502 2.027625 CTTCACCGTCGGCAAGTCC 61.028 63.158 12.28 0.00 0.00 3.85
502 503 1.006571 TCTTCACCGTCGGCAAGTC 60.007 57.895 12.28 0.00 0.00 3.01
503 504 1.300697 GTCTTCACCGTCGGCAAGT 60.301 57.895 12.28 0.00 0.00 3.16
504 505 0.878523 TTGTCTTCACCGTCGGCAAG 60.879 55.000 12.28 13.81 0.00 4.01
505 506 0.878523 CTTGTCTTCACCGTCGGCAA 60.879 55.000 12.28 5.39 0.00 4.52
506 507 1.300620 CTTGTCTTCACCGTCGGCA 60.301 57.895 12.28 0.00 0.00 5.69
507 508 1.006571 TCTTGTCTTCACCGTCGGC 60.007 57.895 12.28 0.00 0.00 5.54
508 509 0.314302 ACTCTTGTCTTCACCGTCGG 59.686 55.000 10.48 10.48 0.00 4.79
509 510 1.269102 ACACTCTTGTCTTCACCGTCG 60.269 52.381 0.00 0.00 0.00 5.12
510 511 2.128035 CACACTCTTGTCTTCACCGTC 58.872 52.381 0.00 0.00 31.66 4.79
511 512 1.202533 CCACACTCTTGTCTTCACCGT 60.203 52.381 0.00 0.00 31.66 4.83
512 513 1.068588 TCCACACTCTTGTCTTCACCG 59.931 52.381 0.00 0.00 31.66 4.94
513 514 2.910688 TCCACACTCTTGTCTTCACC 57.089 50.000 0.00 0.00 31.66 4.02
514 515 7.440523 AATATTTCCACACTCTTGTCTTCAC 57.559 36.000 0.00 0.00 31.66 3.18
515 516 9.567776 TTAAATATTTCCACACTCTTGTCTTCA 57.432 29.630 3.39 0.00 31.66 3.02
538 539 9.228949 GGTCTTCGATACCTAGATCACTATTAA 57.771 37.037 9.62 0.00 33.97 1.40
539 540 7.828223 GGGTCTTCGATACCTAGATCACTATTA 59.172 40.741 15.00 0.00 37.18 0.98
540 541 6.660094 GGGTCTTCGATACCTAGATCACTATT 59.340 42.308 15.00 0.00 37.18 1.73
541 542 6.181908 GGGTCTTCGATACCTAGATCACTAT 58.818 44.000 15.00 0.00 37.18 2.12
542 543 5.072736 TGGGTCTTCGATACCTAGATCACTA 59.927 44.000 15.00 0.00 37.18 2.74
543 544 4.141228 TGGGTCTTCGATACCTAGATCACT 60.141 45.833 15.00 0.00 37.18 3.41
544 545 4.023021 GTGGGTCTTCGATACCTAGATCAC 60.023 50.000 15.00 10.91 37.18 3.06
545 546 4.141228 AGTGGGTCTTCGATACCTAGATCA 60.141 45.833 15.00 4.08 37.18 2.92
546 547 4.400120 AGTGGGTCTTCGATACCTAGATC 58.600 47.826 15.00 2.08 37.18 2.75
547 548 4.456662 AGTGGGTCTTCGATACCTAGAT 57.543 45.455 15.00 1.46 37.18 1.98
548 549 3.947612 AGTGGGTCTTCGATACCTAGA 57.052 47.619 15.00 0.00 37.18 2.43
549 550 4.571372 GAAGTGGGTCTTCGATACCTAG 57.429 50.000 15.00 0.00 42.26 3.02
559 560 7.453752 TGACTAGTTAATGTAGAAGTGGGTCTT 59.546 37.037 0.00 0.00 39.32 3.01
560 561 6.952358 TGACTAGTTAATGTAGAAGTGGGTCT 59.048 38.462 0.00 0.00 0.00 3.85
561 562 7.166691 TGACTAGTTAATGTAGAAGTGGGTC 57.833 40.000 0.00 0.00 0.00 4.46
562 563 7.549147 TTGACTAGTTAATGTAGAAGTGGGT 57.451 36.000 0.00 0.00 0.00 4.51
563 564 6.535508 GCTTGACTAGTTAATGTAGAAGTGGG 59.464 42.308 0.00 0.00 0.00 4.61
564 565 7.063544 GTGCTTGACTAGTTAATGTAGAAGTGG 59.936 40.741 0.00 0.00 0.00 4.00
565 566 7.063544 GGTGCTTGACTAGTTAATGTAGAAGTG 59.936 40.741 0.00 0.00 0.00 3.16
566 567 7.097834 GGTGCTTGACTAGTTAATGTAGAAGT 58.902 38.462 0.00 0.00 0.00 3.01
567 568 6.535508 GGGTGCTTGACTAGTTAATGTAGAAG 59.464 42.308 0.00 0.00 0.00 2.85
568 569 6.014070 TGGGTGCTTGACTAGTTAATGTAGAA 60.014 38.462 0.00 0.00 0.00 2.10
569 570 5.482526 TGGGTGCTTGACTAGTTAATGTAGA 59.517 40.000 0.00 0.00 0.00 2.59
570 571 5.730550 TGGGTGCTTGACTAGTTAATGTAG 58.269 41.667 0.00 0.00 0.00 2.74
571 572 5.748670 TGGGTGCTTGACTAGTTAATGTA 57.251 39.130 0.00 0.00 0.00 2.29
572 573 4.634012 TGGGTGCTTGACTAGTTAATGT 57.366 40.909 0.00 0.00 0.00 2.71
573 574 5.647658 TGATTGGGTGCTTGACTAGTTAATG 59.352 40.000 0.00 0.00 0.00 1.90
574 575 5.648092 GTGATTGGGTGCTTGACTAGTTAAT 59.352 40.000 0.00 0.00 0.00 1.40
575 576 5.001232 GTGATTGGGTGCTTGACTAGTTAA 58.999 41.667 0.00 0.00 0.00 2.01
576 577 4.041075 TGTGATTGGGTGCTTGACTAGTTA 59.959 41.667 0.00 0.00 0.00 2.24
577 578 3.181445 TGTGATTGGGTGCTTGACTAGTT 60.181 43.478 0.00 0.00 0.00 2.24
578 579 2.371841 TGTGATTGGGTGCTTGACTAGT 59.628 45.455 0.00 0.00 0.00 2.57
579 580 3.057969 TGTGATTGGGTGCTTGACTAG 57.942 47.619 0.00 0.00 0.00 2.57
580 581 3.346315 CATGTGATTGGGTGCTTGACTA 58.654 45.455 0.00 0.00 0.00 2.59
581 582 2.165167 CATGTGATTGGGTGCTTGACT 58.835 47.619 0.00 0.00 0.00 3.41
582 583 1.403249 GCATGTGATTGGGTGCTTGAC 60.403 52.381 0.00 0.00 34.85 3.18
583 584 0.889994 GCATGTGATTGGGTGCTTGA 59.110 50.000 0.00 0.00 34.85 3.02
584 585 0.604073 TGCATGTGATTGGGTGCTTG 59.396 50.000 0.00 0.00 38.37 4.01
585 586 1.563924 ATGCATGTGATTGGGTGCTT 58.436 45.000 0.00 0.00 38.37 3.91
586 587 1.206132 CAATGCATGTGATTGGGTGCT 59.794 47.619 0.00 0.00 38.37 4.40
587 588 1.647346 CAATGCATGTGATTGGGTGC 58.353 50.000 0.00 0.00 38.05 5.01
588 589 1.066787 TGCAATGCATGTGATTGGGTG 60.067 47.619 2.72 0.00 31.71 4.61
589 590 1.268066 TGCAATGCATGTGATTGGGT 58.732 45.000 2.72 0.00 31.71 4.51
600 601 5.873164 TGCAAAATACACAATATGCAATGCA 59.127 32.000 11.44 11.44 44.86 3.96
601 602 6.347270 TGCAAAATACACAATATGCAATGC 57.653 33.333 0.00 0.00 37.51 3.56
602 603 9.776158 AAAATGCAAAATACACAATATGCAATG 57.224 25.926 2.13 0.00 41.30 2.82
603 604 9.991388 GAAAATGCAAAATACACAATATGCAAT 57.009 25.926 2.13 0.00 41.30 3.56
604 605 8.449397 GGAAAATGCAAAATACACAATATGCAA 58.551 29.630 2.13 0.00 41.30 4.08
605 606 7.823310 AGGAAAATGCAAAATACACAATATGCA 59.177 29.630 0.37 0.37 41.83 3.96
606 607 8.200364 AGGAAAATGCAAAATACACAATATGC 57.800 30.769 0.00 0.00 33.34 3.14
611 612 9.383519 TGTAAAAGGAAAATGCAAAATACACAA 57.616 25.926 0.00 0.00 0.00 3.33
612 613 8.948631 TGTAAAAGGAAAATGCAAAATACACA 57.051 26.923 0.00 0.00 0.00 3.72
613 614 9.255304 TCTGTAAAAGGAAAATGCAAAATACAC 57.745 29.630 0.00 0.00 0.00 2.90
614 615 9.823647 TTCTGTAAAAGGAAAATGCAAAATACA 57.176 25.926 0.00 0.00 0.00 2.29
617 618 9.612066 TCTTTCTGTAAAAGGAAAATGCAAAAT 57.388 25.926 0.00 0.00 32.17 1.82
618 619 8.878769 GTCTTTCTGTAAAAGGAAAATGCAAAA 58.121 29.630 0.00 0.00 32.17 2.44
619 620 8.257306 AGTCTTTCTGTAAAAGGAAAATGCAAA 58.743 29.630 0.00 0.00 32.17 3.68
620 621 7.781056 AGTCTTTCTGTAAAAGGAAAATGCAA 58.219 30.769 0.00 0.00 32.17 4.08
621 622 7.346751 AGTCTTTCTGTAAAAGGAAAATGCA 57.653 32.000 0.00 0.00 32.17 3.96
622 623 7.920682 TCAAGTCTTTCTGTAAAAGGAAAATGC 59.079 33.333 0.00 0.00 32.17 3.56
623 624 9.455847 CTCAAGTCTTTCTGTAAAAGGAAAATG 57.544 33.333 0.00 0.00 32.17 2.32
624 625 9.190317 ACTCAAGTCTTTCTGTAAAAGGAAAAT 57.810 29.630 0.00 0.00 32.17 1.82
646 647 0.464036 AGCGTGGTTGACTTGACTCA 59.536 50.000 0.00 0.00 0.00 3.41
659 661 0.596083 GAGATGTGGATCGAGCGTGG 60.596 60.000 0.00 0.00 33.34 4.94
660 662 0.932123 CGAGATGTGGATCGAGCGTG 60.932 60.000 0.00 0.00 41.40 5.34
661 663 1.356979 CGAGATGTGGATCGAGCGT 59.643 57.895 0.00 0.00 41.40 5.07
662 664 2.013483 GCGAGATGTGGATCGAGCG 61.013 63.158 0.00 0.00 41.40 5.03
663 665 0.938637 CAGCGAGATGTGGATCGAGC 60.939 60.000 0.00 0.00 41.40 5.03
667 669 0.179000 AACCCAGCGAGATGTGGATC 59.821 55.000 0.00 0.00 35.67 3.36
673 675 5.391310 GCATATAAATCAACCCAGCGAGATG 60.391 44.000 0.00 0.00 0.00 2.90
680 682 5.593909 TGAAGGTGCATATAAATCAACCCAG 59.406 40.000 0.00 0.00 0.00 4.45
687 689 7.912056 TGATAGCTGAAGGTGCATATAAATC 57.088 36.000 0.00 0.00 0.00 2.17
704 706 5.760253 CGTATGAATGGTTTCCTTGATAGCT 59.240 40.000 0.00 0.00 0.00 3.32
713 715 6.483307 TGAGATGAATCGTATGAATGGTTTCC 59.517 38.462 0.00 0.00 0.00 3.13
717 719 6.410942 TCTGAGATGAATCGTATGAATGGT 57.589 37.500 0.00 0.00 0.00 3.55
718 720 6.128607 GCTTCTGAGATGAATCGTATGAATGG 60.129 42.308 0.00 0.00 0.00 3.16
719 721 6.128607 GGCTTCTGAGATGAATCGTATGAATG 60.129 42.308 0.00 0.00 0.00 2.67
720 722 5.931146 GGCTTCTGAGATGAATCGTATGAAT 59.069 40.000 0.00 0.00 0.00 2.57
721 723 5.069648 AGGCTTCTGAGATGAATCGTATGAA 59.930 40.000 0.00 0.00 0.00 2.57
722 724 4.586421 AGGCTTCTGAGATGAATCGTATGA 59.414 41.667 0.00 0.00 0.00 2.15
723 725 4.880759 AGGCTTCTGAGATGAATCGTATG 58.119 43.478 0.00 0.00 0.00 2.39
724 726 4.586421 TGAGGCTTCTGAGATGAATCGTAT 59.414 41.667 0.00 0.00 0.00 3.06
725 727 3.954258 TGAGGCTTCTGAGATGAATCGTA 59.046 43.478 0.00 0.00 0.00 3.43
728 730 3.132925 GCTGAGGCTTCTGAGATGAATC 58.867 50.000 6.91 0.00 35.22 2.52
739 741 0.323725 TGAAATGGGGCTGAGGCTTC 60.324 55.000 5.84 2.32 38.73 3.86
758 762 2.024941 CCTAGCTTGGGAAGGGAACAAT 60.025 50.000 6.27 0.00 0.00 2.71
773 777 3.381908 CGAACACTTGAGGTATCCTAGCT 59.618 47.826 0.00 0.00 39.61 3.32
774 778 3.380637 TCGAACACTTGAGGTATCCTAGC 59.619 47.826 0.00 0.00 31.76 3.42
779 790 5.897050 AGAAGATCGAACACTTGAGGTATC 58.103 41.667 7.42 0.00 0.00 2.24
846 869 2.612212 ACAAACTTGGTTGTGCTACGAG 59.388 45.455 2.99 0.00 40.22 4.18
881 908 2.235016 TGAGTAAAGCCGCACCATTTT 58.765 42.857 0.00 0.00 0.00 1.82
887 915 3.297472 GAAAACTTGAGTAAAGCCGCAC 58.703 45.455 0.00 0.00 39.76 5.34
890 918 4.830826 AAGGAAAACTTGAGTAAAGCCG 57.169 40.909 0.00 0.00 39.76 5.52
922 952 5.743636 AAGCAAGGGCAATAAAATCTTCA 57.256 34.783 0.00 0.00 44.61 3.02
935 965 4.725790 ATGAACTTATCAAAGCAAGGGC 57.274 40.909 0.00 0.00 42.54 5.19
951 983 4.690748 TGTGAACTGCTACAAGCTATGAAC 59.309 41.667 0.03 0.00 42.97 3.18
953 985 4.535526 TGTGAACTGCTACAAGCTATGA 57.464 40.909 0.03 0.00 42.97 2.15
1009 1057 2.540265 ACAGTCTGCTTGTCCTCTTG 57.460 50.000 0.00 0.00 0.00 3.02
1105 1174 2.156098 TCCAAATGCACCTTTACCGAC 58.844 47.619 0.00 0.00 0.00 4.79
1193 1284 3.270027 TGTTCAACCTCACAGACACTTG 58.730 45.455 0.00 0.00 0.00 3.16
1326 1419 7.412853 CAACCAACTTGACTATATTCTCATGC 58.587 38.462 0.00 0.00 30.42 4.06
1559 1752 7.492994 GGAGCAAGTTATTTCAGTACCTAAGAG 59.507 40.741 0.00 0.00 0.00 2.85
1914 2207 8.275758 CCTCTGTATAGGTATTCTGGAGCTATA 58.724 40.741 0.00 0.00 38.32 1.31
2310 2645 7.329226 CAGTTAATTTTCATACCAGGTTTGCAG 59.671 37.037 0.00 0.00 0.00 4.41
2621 3108 8.510505 GCCACAAAAATTGAATAAAATTGGCTA 58.489 29.630 10.89 0.00 36.31 3.93
2644 3131 0.589223 CCGTTGCGAAAAACTAGCCA 59.411 50.000 0.00 0.00 0.00 4.75
2657 3144 7.130269 GGTGAATGTATTTTACTATCCGTTGC 58.870 38.462 0.00 0.00 0.00 4.17
3319 3833 4.183865 GTGGATCTCATGTTTGATCGACA 58.816 43.478 22.17 4.45 43.26 4.35
3375 3914 1.349026 GAGGCTAGCCAGAATATGCCA 59.651 52.381 34.70 0.00 42.46 4.92
3397 3936 0.846870 AAAGGAGCCCTACCAAGCCT 60.847 55.000 0.00 0.00 31.13 4.58
3422 3961 3.751175 CACAAACAAGCTAGGGAATTCGA 59.249 43.478 0.00 0.00 0.00 3.71
3476 4015 1.118356 AACCCAATTGAAGGCGCCAA 61.118 50.000 31.54 15.47 0.00 4.52
3783 4322 3.004839 CACCGACTATCATCGAGTCCATT 59.995 47.826 0.00 0.00 45.13 3.16
3851 4390 0.942252 GGAAGTGAACAACGGGACAC 59.058 55.000 0.00 0.00 0.00 3.67
3897 4436 5.697067 AGTACAGAGCCTGCTACTTAGTAT 58.303 41.667 0.00 0.00 34.37 2.12
3906 4445 1.274728 CACTCAAGTACAGAGCCTGCT 59.725 52.381 13.41 0.00 36.58 4.24
3988 4527 4.008933 GTCCAGGTCACTGCCGCT 62.009 66.667 0.00 0.00 43.53 5.52
4056 4595 0.463654 AAACCACTCAGTGAGCGCAA 60.464 50.000 20.31 0.00 35.23 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.